Metagenome / Metatranscriptome Family F084594

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084594
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	46 residues
Representative Sequence	MTYGLKRGVMLFPLMASVLLSACVSQSTYDQLQAQYQQAQQQNAAL
Number of Associated Samples	87
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.20 %
% of genes near scaffold ends (potentially truncated)	98.21 %
% of genes from short scaffolds (< 2000 bps)	91.07 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.286 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (46.429 % of family members)
Environment Ontology (ENVO)	Unclassified (49.107 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.464 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 58.11% β-sheet: 0.00% Coil/Unstructured: 41.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF04403	PqiA	9.82
PF08450	SGL	4.46
PF00694	Aconitase_C	4.46
PF00034	Cytochrom_C	3.57
PF04752	ChaC	2.68
PF03886	ABC_trans_aux	2.68
PF02470	MlaD	1.79
PF05199	GMC_oxred_C	1.79
PF00691	OmpA	1.79
PF13557	Phenol_MetA_deg	1.79
PF03793	PASTA	1.79
PF00924	MS_channel	1.79
PF00561	Abhydrolase_1	1.79
PF03781	FGE-sulfatase	0.89
PF01494	FAD_binding_3	0.89
PF00330	Aconitase	0.89
PF13358	DDE_3	0.89
PF02153	PDH_N	0.89
PF09898	DUF2125	0.89
PF08241	Methyltransf_11	0.89
PF12697	Abhydrolase_6	0.89
PF01425	Amidase	0.89
PF00126	HTH_1	0.89
PF03466	LysR_substrate	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG2995	Intermembrane transporter PqiABC subunit PqiA	Cell wall/membrane/envelope biogenesis [M]	9.82
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	4.46
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	4.46
COG3703	Gamma-glutamylcyclotransferase ChaC2 (glutathione degradation)	Inorganic ion transport and metabolism [P]	2.68
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.79
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	1.79
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	1.79
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	1.79
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.89
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	0.89
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.89
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.89
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.89
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.29 %
Unclassified	root	N/A	35.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.29 %
Unclassified	root	N/A	35.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.29 %
Unclassified	root	N/A	35.71 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	50.89 %
Unclassified	root	N/A	35.71 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	41.07 %
Unclassified	root	N/A	35.71 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.79 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.71 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	24.11 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.36 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.89 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.89 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.36 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	4.46 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.89 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.89 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.89 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.89 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.36 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	4.46 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.89 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.89 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.89 %
Enterobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter	0.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.36 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	4.46 %
Enterobacter cloacae complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex	0.89 %
Azospirillum brasilense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum brasilense	0.89 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.89 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.36 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	4.46 %
Salinimicrobium	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Salinimicrobium	0.89 %
Enterobacter cloacae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter cloacae	0.89 %
Azospirillum brasilense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum brasilense	0.89 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.71 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.36 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	4.46 %
Salinimicrobium catena	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Salinimicrobium → Salinimicrobium catena	0.89 %
Enterobacter cloacae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter cloacae	0.89 %
Azospirillum brasilense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum brasilense	0.89 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001167\|JGI12673J13574_1010048	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300003505\|JGIcombinedJ51221_10442009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	526	Open in IMG/M
3300004080\|Ga0062385_10504582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	747	Open in IMG/M
3300004080\|Ga0062385_10680309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	661	Open in IMG/M
3300004082\|Ga0062384_101071521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	580	Open in IMG/M
3300004635\|Ga0062388_101317689	Not Available	721	Open in IMG/M
3300005439\|Ga0070711_100420837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1088	Open in IMG/M
3300005546\|Ga0070696_101970676	All Organisms → cellular organisms → Bacteria → Proteobacteria	507	Open in IMG/M
3300005602\|Ga0070762_10346963	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300005764\|Ga0066903_104682309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	728	Open in IMG/M
3300005764\|Ga0066903_106965028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	586	Open in IMG/M
3300005764\|Ga0066903_107992772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	543	Open in IMG/M
3300005921\|Ga0070766_10613201	Not Available	732	Open in IMG/M
3300006102\|Ga0075015_100951096	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Salinimicrobium → Salinimicrobium catena	523	Open in IMG/M
3300006173\|Ga0070716_101725295	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300006175\|Ga0070712_100717511	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300006806\|Ga0079220_10377048	Not Available	915	Open in IMG/M
3300006904\|Ga0075424_102537450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum brasilense	536	Open in IMG/M
3300006914\|Ga0075436_101242040	Not Available	563	Open in IMG/M
3300009137\|Ga0066709_104018905	Not Available	535	Open in IMG/M
3300010046\|Ga0126384_11095881	Not Available	730	Open in IMG/M
3300010048\|Ga0126373_12293712	Not Available	600	Open in IMG/M
3300010343\|Ga0074044_10624047	All Organisms → cellular organisms → Bacteria → Proteobacteria	704	Open in IMG/M
3300010343\|Ga0074044_10867146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	590	Open in IMG/M
3300010358\|Ga0126370_10792586	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300010358\|Ga0126370_10827051	All Organisms → cellular organisms → Bacteria → Proteobacteria	829	Open in IMG/M
3300010360\|Ga0126372_10854612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	907	Open in IMG/M
3300010360\|Ga0126372_11946220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	634	Open in IMG/M
3300010360\|Ga0126372_12424640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	575	Open in IMG/M
3300010361\|Ga0126378_11919907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	674	Open in IMG/M
3300010376\|Ga0126381_105082694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	504	Open in IMG/M
3300010398\|Ga0126383_11994754	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300012362\|Ga0137361_11753391	Not Available	540	Open in IMG/M
3300012971\|Ga0126369_11354352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	802	Open in IMG/M
3300012971\|Ga0126369_11427496	Not Available	782	Open in IMG/M
3300012971\|Ga0126369_12710973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	579	Open in IMG/M
3300016294\|Ga0182041_10177202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1675	Open in IMG/M
3300016294\|Ga0182041_10898445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	796	Open in IMG/M
3300016371\|Ga0182034_12016258	Not Available	510	Open in IMG/M
3300016404\|Ga0182037_10694067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	871	Open in IMG/M
3300016422\|Ga0182039_12082005	Not Available	523	Open in IMG/M
3300016445\|Ga0182038_10073694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2382	Open in IMG/M
3300016445\|Ga0182038_11373600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	632	Open in IMG/M
3300020580\|Ga0210403_10858350	Not Available	718	Open in IMG/M
3300020583\|Ga0210401_10569386	Not Available	994	Open in IMG/M
3300021171\|Ga0210405_11116612	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300021171\|Ga0210405_11175464	Not Available	570	Open in IMG/M
3300021178\|Ga0210408_11432076	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300021406\|Ga0210386_10847776	Not Available	784	Open in IMG/M
3300021420\|Ga0210394_10994408	Not Available	727	Open in IMG/M
3300021420\|Ga0210394_11793671	Not Available	512	Open in IMG/M
3300021478\|Ga0210402_11419236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter cloacae	621	Open in IMG/M
3300021478\|Ga0210402_11923077	Not Available	517	Open in IMG/M
3300021479\|Ga0210410_10892649	Not Available	776	Open in IMG/M
3300021560\|Ga0126371_11424159	Not Available	823	Open in IMG/M
3300022533\|Ga0242662_10170353	Not Available	670	Open in IMG/M
3300024288\|Ga0179589_10191353	Not Available	891	Open in IMG/M
3300027047\|Ga0208730_1002009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1815	Open in IMG/M
3300027767\|Ga0209655_10233774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	601	Open in IMG/M
3300029636\|Ga0222749_10763405	Not Available	529	Open in IMG/M
3300031469\|Ga0170819_15364088	Not Available	602	Open in IMG/M
3300031545\|Ga0318541_10452205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	718	Open in IMG/M
3300031561\|Ga0318528_10236929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	978	Open in IMG/M
3300031564\|Ga0318573_10742616	All Organisms → cellular organisms → Bacteria → Proteobacteria	527	Open in IMG/M
3300031572\|Ga0318515_10619081	All Organisms → cellular organisms → Bacteria → Proteobacteria	575	Open in IMG/M
3300031680\|Ga0318574_10586855	All Organisms → cellular organisms → Bacteria → Proteobacteria	653	Open in IMG/M
3300031713\|Ga0318496_10358435	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300031713\|Ga0318496_10614687	Not Available	600	Open in IMG/M
3300031723\|Ga0318493_10474316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	690	Open in IMG/M
3300031736\|Ga0318501_10452163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	697	Open in IMG/M
3300031748\|Ga0318492_10764044	Not Available	519	Open in IMG/M
3300031763\|Ga0318537_10306122	All Organisms → cellular organisms → Bacteria → Proteobacteria	588	Open in IMG/M
3300031769\|Ga0318526_10491681	Not Available	501	Open in IMG/M
3300031770\|Ga0318521_10461316	Not Available	761	Open in IMG/M
3300031771\|Ga0318546_10869332	All Organisms → cellular organisms → Bacteria → Proteobacteria	635	Open in IMG/M
3300031778\|Ga0318498_10236505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	825	Open in IMG/M
3300031780\|Ga0318508_1118499	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300031796\|Ga0318576_10124373	Not Available	1192	Open in IMG/M
3300031798\|Ga0318523_10633924	Not Available	526	Open in IMG/M
3300031823\|Ga0307478_10986450	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300031835\|Ga0318517_10006241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4028	Open in IMG/M
3300031835\|Ga0318517_10301464	Not Available	724	Open in IMG/M
3300031846\|Ga0318512_10027587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2407	Open in IMG/M
3300031879\|Ga0306919_10163590	Not Available	1632	Open in IMG/M
3300031910\|Ga0306923_10079193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3681	Open in IMG/M
3300031910\|Ga0306923_10082107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3613	Open in IMG/M
3300031912\|Ga0306921_10154158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2689	Open in IMG/M
3300031912\|Ga0306921_11044440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	919	Open in IMG/M
3300031941\|Ga0310912_11074373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	616	Open in IMG/M
3300031946\|Ga0310910_10256286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1369	Open in IMG/M
3300031946\|Ga0310910_11422819	Not Available	533	Open in IMG/M
3300031954\|Ga0306926_10061274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4527	Open in IMG/M
3300031962\|Ga0307479_11994544	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300031981\|Ga0318531_10287875	Not Available	742	Open in IMG/M
3300032041\|Ga0318549_10121833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1149	Open in IMG/M
3300032043\|Ga0318556_10046676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2081	Open in IMG/M
3300032043\|Ga0318556_10566846	Not Available	593	Open in IMG/M
3300032052\|Ga0318506_10091149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1293	Open in IMG/M
3300032055\|Ga0318575_10051398	Not Available	1891	Open in IMG/M
3300032055\|Ga0318575_10440753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	661	Open in IMG/M
3300032059\|Ga0318533_10061179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2530	Open in IMG/M
3300032066\|Ga0318514_10502391	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300032066\|Ga0318514_10557059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	610	Open in IMG/M
3300032068\|Ga0318553_10626816	Not Available	563	Open in IMG/M
3300032090\|Ga0318518_10338820	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300032261\|Ga0306920_100852238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1335	Open in IMG/M
3300032261\|Ga0306920_102686265	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300032261\|Ga0306920_104171138	Not Available	522	Open in IMG/M
3300033289\|Ga0310914_10227712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1670	Open in IMG/M
3300033290\|Ga0318519_10062236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1907	Open in IMG/M
3300033290\|Ga0318519_10109873	Not Available	1496	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.21%
Host-Associated	Host-Associated	1.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.86%
Aquatic	Environmental → Aquatic	5.36%
Plants	Host-Associated → Plants	1.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.86%
Freshwater	Environmental → Aquatic → Freshwater	4.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.79%
Sediment	Environmental → Aquatic → Sediment	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.46%
Loam	Environmental → Terrestrial → Soil → Loam	10.71%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.46%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	63.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.29%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.14%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.57%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	46.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.29%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.50%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.46%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.68%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.79%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.79%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001167	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300027047	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF042 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12673J13574_10100481	3300001167	Forest Soil	MTYGLKRGVLMLXIIASVLLSACVSQSSYDALQAQYQQAQQQNAALSAQIAADKA
JGIcombinedJ51221_104420092	3300003505	Forest Soil	MTYRLKRGVLLFPIVAPVLLSACVSQSSYDALQAQYQQAQQQNAALSAQVAAD
Ga0062385_105045821	3300004080	Bog Forest Soil	MIYDLKRGVLMLPLMASVVLSACVSQSSYDALQAQYQQAQQQNAALSNQ
Ga0062385_106803093	3300004080	Bog Forest Soil	MTYGLKRGVLLLPLMAPILLSACVTQSKYDELQAQYHQAQQQNSALSAQVAADKTQI
Ga0062384_1010715211	3300004082	Bog Forest Soil	MIYGLKRGVLMLPLMASVALSACVSQSSYDALQAQYQQAQQQNAALSNQVAADKA
Ga0062388_1013176892	3300004635	Bog Forest Soil	MAYGLKRGVLLLPLMAPVLLSACVSQGKYDQLQAQYQQAQQQNSALS
Ga0070711_1004208371	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTYGLKRGVLLFPLVAPVLLSACVSQSSYDALQAQYQQAQQQNAALSAQVA
Ga0070696_1019706762	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MTYGLRRGVLMLPLMTSVALSACVSQSSYDALQAQYQQVQQQNAALSNQVAADKAQICRL
Ga0070762_103469631	3300005602	Soil	MTYGLKRGVLMLSIIASVLLSACVSQSSYDALQAQYQQAQQQNAALSAQVAA
Ga0066903_1046823091	3300005764	Tropical Forest Soil	MTHGLKRGVLMLPLMAPVLFSACVSQSRYDDLQAQYQQLQQQNSKLSAQVAA
Ga0066903_1069650281	3300005764	Tropical Forest Soil	MAHDLKRGGLLLPFMASVLLSACVSQSAYDQLQAQNQQLQ
Ga0066903_1079927722	3300005764	Tropical Forest Soil	MAFGLKYGVLLLPVMASALLSACVSQSAYDQLQAQNQQLQQ
Ga0070766_106132012	3300005921	Soil	MTYGLKRGVLMLSIIASVLLSACVSQSSYDALQAQYQQAQQQNAALSAQ
Ga0075015_1009510961	3300006102	Watersheds	MTHGLKRGILLFSLTASLFLSACVSQRTYDQLQAQYQQAQQQNAALSAQV
Ga0070716_1017252952	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MTYGLKRGVLLFALMASVLLCACVSQSKYDELQAQYQQVQQQ
Ga0070712_1007175113	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MAYGLKRGVLLFPLVAPVLLSACVSQSSYDALQAQYQQAQQQNAALSAQ
Ga0079220_103770482	3300006806	Agricultural Soil	MTYDLKRGVLMFPLMASVALSACVSQSSYDALQAQYQQAQQQNAALSNQVAAD
Ga0075424_1025374501	3300006904	Populus Rhizosphere	MTYDLKRAVLLFPLVAPVLLSACVSQSAYDQLQAQYQQAQ
Ga0075436_1012420402	3300006914	Populus Rhizosphere	MAFHLRRRVVLPLVSSILLSACVSQSTYEQLQAQYQQLQQQNTAL
Ga0066709_1040189051	3300009137	Grasslands Soil	MTHGRKRGLLLLPLVAPVLLSACVSQRTYDELQAQYQQVQQQNSALSA
Ga0126384_110958811	3300010046	Tropical Forest Soil	MTFSLKGGLVLFPALAAVLLSACVSQRTYDELQAQYQQAQQQNAALSAQVAADK
Ga0126373_122937122	3300010048	Tropical Forest Soil	MTFSLKGGLVLLPALAAVLLSACVSQRTYDELQAQYQQAQQQNAAL
Ga0074044_106240471	3300010343	Bog Forest Soil	MTYGLKRGVLLFSLIAAVLLSACVSQSSYDQLQAQYQQVQQQN
Ga0074044_108671462	3300010343	Bog Forest Soil	MIHGLKRGILLLPLMAPLLLSACVWKSDYDALQAQYEQAQQQNAALSQQVAA
Ga0126370_107925861	3300010358	Tropical Forest Soil	MTYNLKRGVPLLPLVASVFLSACVSQSAYDQLQTQNQQLQQ
Ga0126370_108270511	3300010358	Tropical Forest Soil	MEYDLKRGVLLLPLLASVLLSGCVWKSEYDQLQAQNQQLQQQVAADK
Ga0126372_108546121	3300010360	Tropical Forest Soil	MAYHLKRGVALLPLMASVFLSACVSQSAYDQLQAQNQQLQQQNSALSA
Ga0126372_119462201	3300010360	Tropical Forest Soil	MAYGLKRGVLLLPLIAPVLLSACVSQSKYDQLQAQYQQ
Ga0126372_124246401	3300010360	Tropical Forest Soil	VTYYRKRSTLLVQLIASALLSACVSQSAYDQLQAQNQ
Ga0126378_119199071	3300010361	Tropical Forest Soil	MAYHQKRGVALLPLMASVLLSACVSQSAYDQLQAQNQQLQQQNSAL
Ga0126381_1050826941	3300010376	Tropical Forest Soil	MAYHQKRGVALLPLMASVLLSACVSQSAYDQLQAQNQQLQQQN
Ga0126383_119947542	3300010398	Tropical Forest Soil	MAYNLRRSVPLFSLMASVLLSACVSQSTYDQLQAQYQQLQQQNAA
Ga0137361_117533911	3300012362	Vadose Zone Soil	MTHDLKRKVLLIPLLAPVLLSACVSQGKYDDLQAQYRQLQQQNSALTA
Ga0126369_113543521	3300012971	Tropical Forest Soil	MEYHLKRGVALLPLMASVLLSACVSQSAYDQLQAQNQQL
Ga0126369_114274961	3300012971	Tropical Forest Soil	MTHDLKRGVLLLPLMASALLSACVSQSAYDQLQAQNQQLQQQNAA
Ga0126369_127109732	3300012971	Tropical Forest Soil	MAHDLKRGGLLLPFMASVLLSACVSQSAYDQLQAQNQQLQK
Ga0182041_101772021	3300016294	Soil	MTYDPKRGVLLVAAVLLSACVSQSKYDDLEAQYHQLQ
Ga0182041_108984451	3300016294	Soil	MTCGLKRGVLLFSLVAPVLLSACVSQSSYDALQAQYQQAQQQNAALSNQVAADKAQICRL
Ga0182034_120162582	3300016371	Soil	MIFGLKRRVLLLPIIAPALLSACVAQSKYDELEAQ
Ga0182037_106940671	3300016404	Soil	MTYGLKRVLLLPLVAPVLFSACVSQSKYDELQAQYHQLQQQNSALSS
Ga0182039_120820051	3300016422	Soil	MTFGLKRGLVPFPLLTAFLLAACVSQRTYDELQAQYQQVQQQNAALSAQVA
Ga0182038_100736941	3300016445	Soil	MTYGLKRRGLLLPLVAPVLLSACVSQSRYDELQAQYQQAQQQNSALSSQ
Ga0182038_113736001	3300016445	Soil	MTYGLKRVLLLPLVAPVLFSACVSQSKYDELQAQYQQAQQQHSALSAQVAADKAQIC
Ga0187772_110143721	3300018085	Tropical Peatland	MAYQTKRRLLPVLPTAAVLVLSACVSQGTYDQLQAQYQQLQQQNS
Ga0210403_108583502	3300020580	Soil	MAYGLKRGVLMLPIMASVLLSACVSQSSYDALQAQYQQAQQQNSALSAQVAADKAQIC
Ga0210401_105693861	3300020583	Soil	MAYGLKRGVLMLPIMASVLLSACVSQSSYDALQAQYQQAQQQNSALSAQ
Ga0210405_111166121	3300021171	Soil	MTYRLKRGVLLFPIVAPVLLSACVSQSSYDALQAQYQQAQQQNAALS
Ga0210405_111754642	3300021171	Soil	MTYGLKRGVLLFALMASVLLCACVSQSKYDELQAQYQQVQQQNA
Ga0210408_114320762	3300021178	Soil	MTYRLKRGVLLFPIVAPVLLSACVSQSSYDALQAQYQQAQQQNAALSAQVAADKA
Ga0210386_108477761	3300021406	Soil	MTYGLKRGVLMLSIIASVLLSACVSQSSYDALQAQY
Ga0210394_109944081	3300021420	Soil	MTHSLKRGILPFSLTASVFLSACVSQSSYDQLQAQYQQAQQQNAALS
Ga0210394_117936711	3300021420	Soil	MAYGLKRGVLMLPIMASVLLSACVSQSSYDALQSQY
Ga0210402_114192361	3300021478	Soil	MTYRLKRGVLLFPIVAPVLLSACVSQSSYDALQAQYQQAQQQNAALSAQVA
Ga0210402_119230772	3300021478	Soil	MAYGLKRGVLMLPIMASVLLSACVSQSSYDALQAQYQQAQQQNSALSAQVAA
Ga0210410_108926492	3300021479	Soil	MAYGLKRGVLMLPIMASVLLSACVSQSSYDALQAQYQQAQQQNSALSAQVAADKAQICRL
Ga0126371_114241591	3300021560	Tropical Forest Soil	MAHDLKRGVLLLPLMAAVLLSACVSQSAYDQLQAQN
Ga0242662_101703531	3300022533	Soil	MTYGLKRGVLMLSIIASVLLSACVSQSSYDALQAQYQQAQQQNAALSAQVAADKAQIC
Ga0179589_101913531	3300024288	Vadose Zone Soil	MTYGLKRGVLMLSIIASVLLSACVSQSTYDALQAQYQQAQQQNAALSAQVAADR
Ga0208730_10020094	3300027047	Forest Soil	FEAMTYGLKRGVLMLSIIASVLLSACVSQSSYDALQAQYQ
Ga0209655_102337741	3300027767	Bog Forest Soil	MAYGLKRGVLLFPLVAPVLLSACVSQSSYNALQAQYQQVQQQNAALSNQVAADKAQ
Ga0222749_107634051	3300029636	Soil	MTHGLKRGILLFPLTASLFLSACVSQSSYDQLQAQYQQAQQQNAALS
Ga0170819_153640881	3300031469	Forest Soil	MAYGLKRGVLLFPLVAPVLLSACVSQSKYDQLQSQ
Ga0318541_104522052	3300031545	Soil	MTHMLKRGVLLLPLLATVVLAGCGVSQSQYDALQAQNQQLQQQ
Ga0318528_102369293	3300031561	Soil	MTYGLKRGVLLAAVVSLAACVSQSKYDDLQAQYHQLQP
Ga0318573_107426161	3300031564	Soil	MTYGLKRSVLMFPLMASVLLSACVSQSKYDELQAQYQKAQQQNAALSNQVAADKAQIC
Ga0318515_106190811	3300031572	Soil	MTYGLKRSVLMFPLMASVFLSACVSQSKYDELQAQYQKAQQQNAALSNQ
Ga0318574_105868552	3300031680	Soil	MTYGLKRSVLMFPLMASVFLSACVSQSKYDELQAQ
Ga0318496_103584351	3300031713	Soil	MTYDPKRGVLLVAAVLLSACVSQSKYDDLEAQYRQLQ
Ga0318496_106146871	3300031713	Soil	MTYNLKHGVPLLPLAASVLLSACVSQSAYDQLQAQNQQLQ
Ga0318493_104743161	3300031723	Soil	MAHHLKRGVALLPLMASVLLSACVSQSAYDQLQAQNQQLQQQNA
Ga0318501_104521632	3300031736	Soil	MIFGLKRRVLWLPIMAPVLLSACVSQSKYDDLEAQYR
Ga0318492_107640441	3300031748	Soil	MTYGLKRGVMLFPLMASVLLSACVSQSTYDQLQAQYQQAQQ
Ga0318537_103061222	3300031763	Soil	MTYGLKRGVLMLPLMASALLSACVSQSKYDQLQAQYQ
Ga0318526_104916811	3300031769	Soil	MTYDPKRGVLLVAAVLLSACVSQSKYDDLEAQYHQLQQQNSALTAQVAADK
Ga0318521_104613161	3300031770	Soil	MTYGLKRGVMLFPLMASVLLSACVSQSTYDQLQAQYQQAQQQNA
Ga0318546_108693321	3300031771	Soil	MTYGLKRGVLMLPLMTSVLLSACVSQSKYDELQAQYQKAQQQNAA
Ga0318498_102365052	3300031778	Soil	MTYGLKRRGLLLPLVAPVLLSACVSQSRYDELQAQYQQAQQQNS
Ga0318508_11184992	3300031780	Soil	MGYDLKRSVSLVAAVLLSACVSQSKYDDLQAQYHQ
Ga0318576_101243731	3300031796	Soil	MAHDLKRGGLLLPLMASVLLSACVSQSAYDQLQAQNQQL
Ga0318523_106339241	3300031798	Soil	MGKLEAMTYGLKPGVLLFPLMASVLLSACVSQSTYD
Ga0307478_109864501	3300031823	Hardwood Forest Soil	MTCGLKRGALLLPLIAPVLLSACVSQGKYDQLQAQYQQLQQQNAALTSQVAADK
Ga0318517_100062411	3300031835	Soil	MTYGLKRRVLVLPLAAPILLSACVSQSRYDELQAQYQQ
Ga0318517_103014641	3300031835	Soil	MTYGLKRGVMLFPLMASVLLSACVSQSTYDQLQAQYQQAQQQNAAL
Ga0318512_100275871	3300031846	Soil	MTHGLKRRVLLLPLVAPVLLSACVSQSRYDELQAQYQQA
Ga0306919_101635902	3300031879	Soil	MTYGLKRGVPLLPLVAAVFLSACVSQSTYDQLQAQYQQLQQQNAALSS
Ga0306923_100791935	3300031910	Soil	MTYNLKHGVPLLPLAASVLLSACVSQSAYDQLQAQNQQLQQQNSA
Ga0306923_100821071	3300031910	Soil	MIFGLKRRVLLLPIIAPALLSACVAQSKYDELEAQYRQLQQQNSALSAQV
Ga0306921_101541581	3300031912	Soil	MTHDIKRKVLLLPLLAPALLLSACVSQSRYDDLQAQY
Ga0306921_110444401	3300031912	Soil	MTYGLKRRVLLLPLVAPVLFSACVSQSKYDELQAQYHQLQQQNSALSSQ
Ga0310912_110743732	3300031941	Soil	MTHMLKRGVLLLPLLATVVLAGCGVSQSQYDALQAQNQQLQQQVA
Ga0310910_102562861	3300031946	Soil	MIFGLKRRVLWLPIMAPVLLSACVSQSKYDDLEAQYRQLQQQNSALSAQ
Ga0310910_114228191	3300031946	Soil	MRYDLRRGGLLFPFMASALLSACVSQSAYDNLQAQNQQLQQQNAALSAQV
Ga0306926_100612741	3300031954	Soil	MTYGLKRRGLLLPLVAPVLLSACVSQSRYDELQAQYQQAQQQNSALSSQVA
Ga0307479_119945441	3300031962	Hardwood Forest Soil	MTYGLKRGALLLPLIAPVLLSACVSQGKYDQLQAQYQQL
Ga0318531_102878751	3300031981	Soil	MTYGLKRGVMLFPLMASVLLSACVSQSTYDQLQAQYQQAQQQNAALSAQVAADKAQICR
Ga0318549_101218332	3300032041	Soil	MTYGLKRVLLLPLVAPVLFSACVSQSKYDELQAQYHQLQQQNSALSSQVAADKTQICR
Ga0318556_100466762	3300032043	Soil	MTYGLKRRGLLLPLVAPVLLSACVSQSRYDELQAQYQQAQQQNSAL
Ga0318556_105668461	3300032043	Soil	MRYDLRRGALLFPFMASALLSACVSQSAYDTLQAQNQQLQQQN
Ga0318506_100911492	3300032052	Soil	MTYGLKRRVLVLPLAAPILLSACVSQSRYDELQAQYQQAQQQNSALSAQVAAQ
Ga0318575_100513983	3300032055	Soil	MTYGLKRGVPLLPLVAAVFLSACVSQSTYDQLQAQYQQLQQQNAALSSQVAADKAQICR
Ga0318575_104407532	3300032055	Soil	MIFGLKGRVLLLPVIAPALLSCVAQSKYDELEAQYRQLQQQNSALSAQVA
Ga0318533_100611794	3300032059	Soil	MTYGLKRVLLLPLVAPVLFSACVSQSKYDELQAQYHQLQQQNSALSSQVA
Ga0318514_105023912	3300032066	Soil	MTYDPKRGVLAVAAVLLSACVSQSKYDDLEAQYRQLQQ
Ga0318514_105570591	3300032066	Soil	MTYGLKRRVLVLPLAAPILLSACVSQSRYDELQAQY
Ga0318553_106268161	3300032068	Soil	MRYDLRRGGLLFPFMASALLSACVSQSAYDNLQAQNQQLQQQNAALS
Ga0318518_103388202	3300032090	Soil	MTYDPKRGVLLVAAVLLSACVSQSKYDDLEAQYHQLQQQNSALTAQV
Ga0306920_1008522381	3300032261	Soil	MTHGLKRGVLLLSLLAPVLFSACVSQGRYDDLQAQYQQLQQQNSKLSA
Ga0306920_1026862652	3300032261	Soil	MTYGLKRGVLMLPLMTSVLLSACVSQSKYDELQAQYQKA
Ga0306920_1041711381	3300032261	Soil	MMTYGLKRGVLLFALVAPVLLYGCVSQGKYDQLQAQYQQAQ
Ga0310914_102277121	3300033289	Soil	MIFGLKRRVLWLPIMAPVLLSACVSQSKYDDLEAQ
Ga0318519_100622361	3300033290	Soil	MTYGLKRVLLLPLVAPVLFSACVSQSKYDELQAQYQQAQQQNSALSAQ
Ga0318519_101098731	3300033290	Soil	MTYGLKRGVPLLPLVAAVFLSACVSQSTYDQLQAQYQQL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084594

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences