Metagenome / Metatranscriptome Family F084744

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084744
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	83 residues
Representative Sequence	MNSKTAQLINLRIRELLPAKSPADAMLRARWQTAVETVSGHALQKLRLELAPSVSKFLGTSTHGSNDNDRSINIVRPSHLPVSA
Number of Associated Samples	74
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.86 %
% of genes near scaffold ends (potentially truncated)	33.04 %
% of genes from short scaffolds (< 2000 bps)	80.36 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.571 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (38.393 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.429 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.43% β-sheet: 0.00% Coil/Unstructured: 53.57%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01694	Rhomboid	8.93
PF07335	Glyco_hydro_75	6.25
PF03729	DUF308	5.36
PF00083	Sugar_tr	3.57
PF00724	Oxidored_FMN	1.79
PF13520	AA_permease_2	0.89
PF00756	Esterase	0.89
PF00873	ACR_tran	0.89
PF00009	GTP_EFTU	0.89
PF00296	Bac_luciferase	0.89
PF03551	PadR	0.89
PF13376	OmdA	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	8.93
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	5.36
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	1.79
COG1902	2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family	Energy production and conversion [C]	1.79
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.89
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.89
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.89
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.57 %
Unclassified	root	N/A	21.43 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.57 %
Unclassified	root	N/A	21.43 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.57 %
Unclassified	root	N/A	21.43 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	66.96 %
Unclassified	root	N/A	21.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	66.96 %
Unclassified	root	N/A	21.43 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.43 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	17.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.43 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	17.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16750270	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1906	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_104833441	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	644	Open in IMG/M
3300000559\|F14TC_100870693	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1345	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1009246	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1624	Open in IMG/M
3300000890\|JGI11643J12802_10525248	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2117	Open in IMG/M
3300000955\|JGI1027J12803_100569686	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1328	Open in IMG/M
3300000955\|JGI1027J12803_107084837	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	729	Open in IMG/M
3300004156\|Ga0062589_100142398	All Organisms → cellular organisms → Bacteria	1627	Open in IMG/M
3300004157\|Ga0062590_100760673	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	884	Open in IMG/M
3300004463\|Ga0063356_106047322	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	519	Open in IMG/M
3300004643\|Ga0062591_100915786	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	824	Open in IMG/M
3300005093\|Ga0062594_101717668	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	657	Open in IMG/M
3300005332\|Ga0066388_100025258	All Organisms → cellular organisms → Bacteria	5385	Open in IMG/M
3300005332\|Ga0066388_102594632	Not Available	923	Open in IMG/M
3300005332\|Ga0066388_105468388	Not Available	644	Open in IMG/M
3300005332\|Ga0066388_105833849	Not Available	623	Open in IMG/M
3300005332\|Ga0066388_106156602	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	606	Open in IMG/M
3300005332\|Ga0066388_107516520	Not Available	547	Open in IMG/M
3300005354\|Ga0070675_102030747	Not Available	530	Open in IMG/M
3300005713\|Ga0066905_101685372	Not Available	582	Open in IMG/M
3300005764\|Ga0066903_100056107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4865	Open in IMG/M
3300005764\|Ga0066903_100671405	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1818	Open in IMG/M
3300005764\|Ga0066903_101701817	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1201	Open in IMG/M
3300005764\|Ga0066903_101709895	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1198	Open in IMG/M
3300005764\|Ga0066903_105156511	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	692	Open in IMG/M
3300005937\|Ga0081455_10003578	All Organisms → cellular organisms → Bacteria	17834	Open in IMG/M
3300005983\|Ga0081540_1340256	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	513	Open in IMG/M
3300006163\|Ga0070715_11095852	Not Available	501	Open in IMG/M
3300006844\|Ga0075428_100035661	All Organisms → cellular organisms → Bacteria	5483	Open in IMG/M
3300006844\|Ga0075428_101729816	Not Available	652	Open in IMG/M
3300006854\|Ga0075425_100131174	All Organisms → cellular organisms → Bacteria → Proteobacteria	2865	Open in IMG/M
3300006854\|Ga0075425_100334492	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1744	Open in IMG/M
3300006871\|Ga0075434_102337081	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	537	Open in IMG/M
3300006904\|Ga0075424_100361113	Not Available	1547	Open in IMG/M
3300009147\|Ga0114129_10539198	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1519	Open in IMG/M
3300009147\|Ga0114129_10626808	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1390	Open in IMG/M
3300009162\|Ga0075423_11035767	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	872	Open in IMG/M
3300009162\|Ga0075423_12111512	Not Available	611	Open in IMG/M
3300010043\|Ga0126380_10434209	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	987	Open in IMG/M
3300010046\|Ga0126384_10541359	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1010	Open in IMG/M
3300010046\|Ga0126384_10598520	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	965	Open in IMG/M
3300010047\|Ga0126382_10013142	All Organisms → cellular organisms → Bacteria	4058	Open in IMG/M
3300010048\|Ga0126373_10186495	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2000	Open in IMG/M
3300010048\|Ga0126373_11081962	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	868	Open in IMG/M
3300010358\|Ga0126370_11240317	Not Available	695	Open in IMG/M
3300010359\|Ga0126376_10800000	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	920	Open in IMG/M
3300010359\|Ga0126376_11676657	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	670	Open in IMG/M
3300010359\|Ga0126376_12391612	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	575	Open in IMG/M
3300010360\|Ga0126372_11242792	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	771	Open in IMG/M
3300010361\|Ga0126378_10938557	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	971	Open in IMG/M
3300010361\|Ga0126378_12547118	Not Available	584	Open in IMG/M
3300010362\|Ga0126377_10699499	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1066	Open in IMG/M
3300010362\|Ga0126377_11018240	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	895	Open in IMG/M
3300010376\|Ga0126381_100123616	All Organisms → cellular organisms → Bacteria	3354	Open in IMG/M
3300010376\|Ga0126381_100366703	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1996	Open in IMG/M
3300010376\|Ga0126381_104562991	Not Available	534	Open in IMG/M
3300010398\|Ga0126383_10656804	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1124	Open in IMG/M
3300010398\|Ga0126383_11419359	Not Available	784	Open in IMG/M
3300010398\|Ga0126383_12725503	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	577	Open in IMG/M
3300010863\|Ga0124850_1029092	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1773	Open in IMG/M
3300012201\|Ga0137365_11345498	Not Available	505	Open in IMG/M
3300012202\|Ga0137363_10124956	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1990	Open in IMG/M
3300012354\|Ga0137366_10065567	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2769	Open in IMG/M
3300012948\|Ga0126375_10767107	Not Available	759	Open in IMG/M
3300012948\|Ga0126375_11221531	Not Available	627	Open in IMG/M
3300012948\|Ga0126375_11272596	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	616	Open in IMG/M
3300012971\|Ga0126369_11691289	Not Available	722	Open in IMG/M
3300012971\|Ga0126369_13333843	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	526	Open in IMG/M
3300012985\|Ga0164308_12175690	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	516	Open in IMG/M
3300013306\|Ga0163162_13122003	Not Available	532	Open in IMG/M
3300013308\|Ga0157375_11714844	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	744	Open in IMG/M
3300015371\|Ga0132258_10833339	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2326	Open in IMG/M
3300015374\|Ga0132255_100454371	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1875	Open in IMG/M
3300016270\|Ga0182036_10015817	All Organisms → cellular organisms → Bacteria	4169	Open in IMG/M
3300016270\|Ga0182036_10878946	Not Available	734	Open in IMG/M
3300016319\|Ga0182033_10047867	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2872	Open in IMG/M
3300016341\|Ga0182035_10632226	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	927	Open in IMG/M
3300016341\|Ga0182035_12103813	Not Available	512	Open in IMG/M
3300016357\|Ga0182032_10032464	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3207	Open in IMG/M
3300016371\|Ga0182034_10119604	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1926	Open in IMG/M
3300016387\|Ga0182040_10145331	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1682	Open in IMG/M
3300016404\|Ga0182037_10046142	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2881	Open in IMG/M
3300016404\|Ga0182037_10755668	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	836	Open in IMG/M
3300016422\|Ga0182039_10068701	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2496	Open in IMG/M
3300016445\|Ga0182038_10433140	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1109	Open in IMG/M
3300016445\|Ga0182038_11756797	Not Available	559	Open in IMG/M
3300016445\|Ga0182038_12113632	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	510	Open in IMG/M
3300019356\|Ga0173481_10251287	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	796	Open in IMG/M
3300021560\|Ga0126371_10146877	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2415	Open in IMG/M
3300021560\|Ga0126371_10330822	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1655	Open in IMG/M
3300025916\|Ga0207663_10417672	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1029	Open in IMG/M
3300025926\|Ga0207659_11858628	Not Available	511	Open in IMG/M
3300025930\|Ga0207701_10023252	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5924	Open in IMG/M
3300025930\|Ga0207701_10112459	All Organisms → cellular organisms → Bacteria	2433	Open in IMG/M
3300031022\|Ga0138301_1617555	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	743	Open in IMG/M
3300031231\|Ga0170824_103148138	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1182	Open in IMG/M
3300031744\|Ga0306918_10293715	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1250	Open in IMG/M
3300031833\|Ga0310917_11057717	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	543	Open in IMG/M
3300031890\|Ga0306925_10223936	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2028	Open in IMG/M
3300031890\|Ga0306925_10251065	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1906	Open in IMG/M
3300031890\|Ga0306925_10276919	All Organisms → cellular organisms → Bacteria	1806	Open in IMG/M
3300031890\|Ga0306925_10446898	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1382	Open in IMG/M
3300031910\|Ga0306923_10292163	All Organisms → cellular organisms → Bacteria	1863	Open in IMG/M
3300031912\|Ga0306921_12364185	Not Available	555	Open in IMG/M
3300031942\|Ga0310916_11251491	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	612	Open in IMG/M
3300031946\|Ga0310910_11190074	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	591	Open in IMG/M
3300031954\|Ga0306926_12989823	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	505	Open in IMG/M
3300032001\|Ga0306922_11108349	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	811	Open in IMG/M
3300032076\|Ga0306924_10238415	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2089	Open in IMG/M
3300032076\|Ga0306924_10966722	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	937	Open in IMG/M
3300032261\|Ga0306920_100017779	All Organisms → cellular organisms → Bacteria	9822	Open in IMG/M
3300033158\|Ga0335077_12127899	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.04%
Host-Associated	Host-Associated	16.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.04%
Plants	Host-Associated → Plants	16.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.36%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.86%
Loam	Environmental → Terrestrial → Soil → Loam	14.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.79%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.79%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.25%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.57%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	25.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.21%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.57%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.79%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.79%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02404650	2088090014	Soil	MNSAKGQRMNLRIRELLPTESPADAMTFRARWQTAVETVSGHVLQKLRLELAHPVSELLLTSTHGSNNNDRNLNLLRPSHLPVSA
INPhiseqgaiiFebDRAFT_1048334412	3300000364	Soil	MNSNVTNFRARWQTAVETASGYALHKLRLELLPQFQNYSFTLTHGSNDNDRNINILRPSHLPVSA
F14TC_1008706934	3300000559	Soil	MNSTKVQLMNLPIRGSLLAESRADAMTFRARWQTAAETVSGHTLQKLRLELAHSVSELLLTSTHGSNDND
AP72_2010_repI_A01DRAFT_10092462	3300000579	Forest Soil	MNSKKAQLINLRIPELLPAKSPADAMRLRARWQTAVETVSGQALQKLRLELAHSVSELLLTSTHGSDNHDRNLNLLRPSHLPVSA*
JGI11643J12802_105252484	3300000890	Soil	MNSAKGQRMNLRIRELLPTESPADAMTFRARWQTAVETVSGHVLQKLRLELAHPVSELLLTSTHGSNNNDRNLNLLRPSHLPVSA*
JGI1027J12803_1005696862	3300000955	Soil	MKSTNAEGMNLPIRQLLRAESRAGMTIFHARWQTAVETVSGHALQKLRLELPHPVSELLLTSTHRSNNNDRNLNLVRTPHLPVSA*
JGI1027J12803_1070848371	3300000955	Soil	MRELVRVESCDRVINFRARWQTAVETISGYALQKLRLELAPFSKLLGTSTHGSNDNDCSINIVRPSHLPVSA*
Ga0062589_1001423983	3300004156	Soil	MNSKTAQLINLRIRELLPAKSPADAMRLRARWQTAVETVSGHALQKLRLELAPSVSKFLGTSTHGSNYNDRSIHIVRPSHLPVSA*
Ga0062590_1007606731	3300004157	Soil	MNSKNAQLMNLPIRELLPAKSPADAMTFHARWQTAVETVSGYTLQKLRLEFAPSVSKFLGASTHGSNNNDRSINIVCPSHLPVSA*
Ga0063356_1060473221	3300004463	Arabidopsis Thaliana Rhizosphere	MNSKTAQLINLRIRELLPAKSPADAMLRARWQTAVETVSGHALQKLRLELAPSVSKFLGTSTHGSNDNDRSINIVRPSHLPVSA*
Ga0062591_1009157862	3300004643	Soil	MNSKTAQLINLRIRELLPAKSPADAMRLRARWQTAVETVSGHALQKLRLELAPSVSKFLGTSTHGSNDNDRSI
Ga0062594_1017176681	3300005093	Soil	MNSTNAERTDLTFLQLQCAQSFGDVINFRARWQTVVETVSGHALQKLRLELAHSVSESLFTSTHGNNNNDRYLNLVRTSHLPVSA*
Ga0066388_1000252586	3300005332	Tropical Forest Soil	MKSTHAERVSLPIRELPPAESCAGTITFRARWQTAVETLSGYALQKLRLESAPPLPEFLLTSTHASNDNDCRIDILRPSHLPFSA*
Ga0066388_1025946323	3300005332	Tropical Forest Soil	MNSTNAERVNLPIRKSLRAESCGDPIDFRARWQTAVEIVSGYALQKLRLELVRSVSDLLLNSTHGSNDNDRSINIVRPSHLPASA*
Ga0066388_1054683881	3300005332	Tropical Forest Soil	ACKGAEIMNSTRVQPLNLPIRELLSADSRAEAMTLRARWQATVETVSGHTLQKLRLELAPSVSKFLDTSTHGSNDNDRSINIVRPSHLPVSA*
Ga0066388_1058338491	3300005332	Tropical Forest Soil	MNSKKAQLMNLPIRELLPADSHADATTFRAGWQTAVETLSGHALQKLRLELAQSVSELFLTSTHGSSNHDRNLNLLRPSHLPVSA*
Ga0066388_1061566021	3300005332	Tropical Forest Soil	MNLPSRELVPAESHAGATTFRARWQTAVETVSGRALQKLRLELAPSVSELLLTSTHGSNDNDRSIHIVCPSHLPVSA*
Ga0066388_1075165201	3300005332	Tropical Forest Soil	SLRAEGCSDPVDFRARWQTAVETVSGYALEKLRLELAHSVSDLLFNSTHGSNDNDRSINIVRPSHLFVSA*
Ga0070675_1020307471	3300005354	Miscanthus Rhizosphere	MNSKTAQLINLRIRELLPAKSPADAMRLRARWQTAVETVSGHALQKLRLELAPSVSKFLGTSTHGSNDNDRSIHIVRPSHLPVSA*
Ga0066905_1016853722	3300005713	Tropical Forest Soil	MNCTIAEPINVPIRESLRTESCGDAMNFRARWQTAFETESGQALQKLRLESAPSVSELLLNSTHGSNDNDRGTNIVRPSHLPASA*
Ga0066903_1000561074	3300005764	Tropical Forest Soil	MNSTNAERVNLPIRKSLRVESCGDPMNFRARGQTAVETVSGYALQKLRLELVRSVSDLLLNSTHGSNDNDRSINIVRPSHLPASA*
Ga0066903_1006714052	3300005764	Tropical Forest Soil	MNSKKAQLMNLPIRELLPADSHADATTFRAGWQTAVETVSGHALQKLRLEFAQSVSELLLTSTHGSSNHDRNLNLLRPSHLPVSA*
Ga0066903_1017018172	3300005764	Tropical Forest Soil	MNSTIAEQINVPIRESLRTESRATALNFRARWQTAFETESGHALQKLRLESVPSVSELLLNSTHGSNDSDRSINILRPSYLPAST*
Ga0066903_1017098952	3300005764	Tropical Forest Soil	MNLPNRELLPTESHADATTFRARWQAAVETVSGHALKKLRLELAHFVSELLLTSTHGSNDNDRSINIVRPSHLPVSA*
Ga0066903_1051565111	3300005764	Tropical Forest Soil	MKFTNAERMNLPIRELLRTESRAGVMTFGARWQTGVENESGHALQKLRLELSPSASQLLLTSTHRSNNNDRNLNLLLPSHLSVST*
Ga0081455_100035789	3300005937	Tabebuia Heterophylla Rhizosphere	MNSTNAERMNLPMRELLQTESRDGLMNFRARWQTAVETLSGRTLQKIRLEFAPLSERLTSTHRSNDNDRSVNIVRPSHLPVSA*
Ga0081540_13402562	3300005983	Tabebuia Heterophylla Rhizosphere	MNSTIAEQIKARILESERVESYRNVMDFRARWQTAFETESGRALQKLRLELAPFVSEFLSNSTHGNNDN
Ga0070715_110958521	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	STRVQPLNLPIRELLSADSRAEAMTFRTRWQATVETVSGHALQKLRLELAPSVSKFLGTSTHGSNDNDRSINIVRPSHLPVSA*
Ga0075428_1000356617	3300006844	Populus Rhizosphere	MHESVWVESCDRVINFRARWQTAVETISGYALQKLRLELAPFSKLLSTSTHGSNDNDCSINIVRPSHLPVSA*
Ga0075428_1017298161	3300006844	Populus Rhizosphere	MNLPIRGSLPAESRDDAMTFRARWQTAVETISGHASQKLRLELAHSVSELFLISTHGSNDNDRNLNLLRSSHLPVSA*
Ga0075425_1001311741	3300006854	Populus Rhizosphere	AKSPADAMRLRARWQTAVETVSGHALQKLRLELAPSVSKFLGTSTHGSNDNDRSIHIVRPSHLPVSA*
Ga0075425_1003344922	3300006854	Populus Rhizosphere	MNSTKAQLMNLPIRGSLPAESRDDAMTFRARWQTAVETISGHASQKLRLELAHSVSELFLISTHGSNDNDRNLNLLRSSHLPVSA*
Ga0075434_1023370811	3300006871	Populus Rhizosphere	MNSKTAQLINLRIRELLPAKSPADAMRLRARWQTAVETVSGHALQKLRLELAPSVSKFLGTSTHGSNDNDR
Ga0075424_1003611133	3300006904	Populus Rhizosphere	MNSTNAERTDLTFRQLQCAQSFGDVINFRARWQTVVETVSGHALQKLRLELAHSVSESLFTSTHGNNNNDRYLNLVRTSHLPVSA*
Ga0114129_105391984	3300009147	Populus Rhizosphere	MNSTKAQLMDLRIRESARAESCDRVINFRARWQTAVETVSGYALQKLRLELAPSVSKFLNTSTHGSNDN
Ga0114129_106268084	3300009147	Populus Rhizosphere	VNQRDGAEIMNSKTAQLINLRIRELLPAKSPADAMRLRARWQTAVETVSGHALQKLRLELAPSVSKFLGTSTHGSNDNDRSIHIVRPSHLPVSA*
Ga0075423_110357672	3300009162	Populus Rhizosphere	MNSKTAQLINLRIRELLPAKSPADAMRLRARWQTAVETVSGHALQKLRLELAPSGSKFLGTSTHRSNDNDRSIHIVRPSHLPVSA*
Ga0075423_121115121	3300009162	Populus Rhizosphere	TGIQPANRREGAEIMNSKNAQLMNLPIRELLPAKSPADAMTFHARWQTAVETVSGYTLQKLRLEFAPSVSKFLGASTHGSNNNDRSINIVCPSHLPVSA*
Ga0126380_104342091	3300010043	Tropical Forest Soil	MTRTIRELLLAKSPADVMTFQARWQTAVETVSGYALQKLRLELTSSVSKLLGTSTHGSNDNDCSIIVRPSHLLVSA*
Ga0126384_105413592	3300010046	Tropical Forest Soil	MKSTNEDRMNLPIRQSLGAESCGDVMNFCARWQTAVETVSGNALRKLRLELAHFVSELLLTSTHTSTNNDRNLNLVRPSHLPVSV*
Ga0126384_105985202	3300010046	Tropical Forest Soil	MNSTRVQRLNLPIRELLSADSRAEAMTLRARWQATVETVSGRALQKLRLELAPSVSKFLGTSTHGSNDNDRSINIVRPSHLPVSA*
Ga0126382_100131425	3300010047	Tropical Forest Soil	MKSTHAERVSLPIRELPPAESCAGTITFRARWQTAVETLSGYALQKLRLESAPPLPEFLLTSTHGSNDNDCRIDILRPSHLPFSA*
Ga0126373_101864952	3300010048	Tropical Forest Soil	LNACKRADIMNSTNADRLNLPMRESVRAESCDRAINFRARWQTAVETVSGYAFQKLRLELSPSVSKLPGTSTHGSNDNDCSIIVRPSHLPVSA*
Ga0126373_110819621	3300010048	Tropical Forest Soil	MNSKKAQLMNLPIRELLPADSHADAATFRAGWQTAVETVSGHALQKLRLELAQSVSELFLTSTHGSSNHDRNLNLLRPSHLPVSA*
Ga0126370_112403171	3300010358	Tropical Forest Soil	LPIRELQLADSRAEAMTFRARWQATVETVSGHALQKLRLELAPSVSKFLGTSTHGSNDNDRSINIVRPSHLPVSA*
Ga0126376_108000001	3300010359	Tropical Forest Soil	MNSKKAHLMNLPIRELLPAESHADATTFRARWQTAVETVSGHALQKLRLELAHSVSELLLTSTHGSSNHDRNLNLLRPSHLPVSA*
Ga0126376_116766572	3300010359	Tropical Forest Soil	MTRTIRELLLAKSPADVMTFHARWQTAVETVSGYALQKLHLELAPSVSKFLGTSTHGSNDNDRSINIVRPSHLPVSA*
Ga0126376_123916121	3300010359	Tropical Forest Soil	MNFTNAERMNLTIRELLRAESSSDAMSFRARWQTAVETESGNALQKLRLELAHSVSELLLTSTHGSDDNDFSINILRPSH
Ga0126372_112427921	3300010360	Tropical Forest Soil	MNSKKAQVMNLRIRELLPEESHADATTFRALWQTAVETVSGHALQKLRLELAHSVSELLLTSTHGSSNHDRNLNLLRPSHLPVSA*
Ga0126378_109385572	3300010361	Tropical Forest Soil	MNFTNAERMNLTIRELLRAESSSDAMSFRARWQTAVETVSGHTLQKLRLELAYSVSQLLLTSTHGSNDNDRNLSLMRSSHLPVSA*
Ga0126378_125471182	3300010361	Tropical Forest Soil	MNFTNADRVNLPMRESVRAESCDRAINFRARWQTAVETVSGYALQKLCLELTSSVSKLLGTSTHGSNDNDCSIIVRPSHLPVSA*
Ga0126377_106994992	3300010362	Tropical Forest Soil	MNSTRVQRLNLPIRELLSADSRAEAMTLRARWQATVETVSGHALQKLRLELAPSVSKFLGTSTHGSNDNDRSIHIVRPSHLPVSA*
Ga0126377_110182401	3300010362	Tropical Forest Soil	MNSKKAQLMNLPIRELLAAESRADAMTFSRTMANRCGNRIGHALQKLRLELAHSVSELLLTSTHGSSNHDRHLNLLRPSHLPVSA*
Ga0126381_1001236162	3300010376	Tropical Forest Soil	MNSINTERMNLLIRESLRAESCSDPIDFRARWQTALETVSGYTLQKLRLELAPSVSDLLLNSTHGSNDNDRSINIVRPSHLSVSA*
Ga0126381_1003667032	3300010376	Tropical Forest Soil	MNSTNADRLNLPMRESVRAESCDRAINFRGRWQTTVETVSGYALQKLRLELTSSVSKLLGTSTHGSNDNDCGIIVRPSHLPVSA*
Ga0126381_1045629911	3300010376	Tropical Forest Soil	LPIRQSLLTTSCGDAMNFHARWRTAVETVSGYALQKLRLELVHSVSELLLTLTHGSNNNDRNLNLVRPSHLPVSV*
Ga0126383_106568043	3300010398	Tropical Forest Soil	MNPTNAERINLPMRESVRAENCDRVINFRARWQTVVETVSGYALQKRRLELTSSVSKLLGTSTHGSNYNDCSVNIVRPSHLPVSA*
Ga0126383_114193592	3300010398	Tropical Forest Soil	MKSTNAKRMNLPIRELLRAESCDGVVNFRARWQTAVETVSGHALQKLRLELAPFLELLLTSTHGSNNNDRSIHFLRPSHLPVSA*
Ga0126383_127255031	3300010398	Tropical Forest Soil	MNFTNAEGMNLTIRELLRAESSSDAMSFRARWQTAVETVSGHTLQKLRLGLAYSVSQLLLTSTHGSNDNDRNLNLMRSSHLPVSA*
Ga0124850_10290921	3300010863	Tropical Forest Soil	MSPRNAEQMSLPIPKSLRAESCNDATSFRARWQTAVETVSGYALQKLRLELAHSALELLLTSTHGSDDNDHSANIVRPSHMPVSA*
Ga0137365_113454982	3300012201	Vadose Zone Soil	MNSTNAERVNLPMRESVRAESCDRVTNFCARWQTAVETVSRYALQKLRLELAASVSKFLGTSTHGSNDNDRSINIVRPSHLPVSA*
Ga0137363_101249563	3300012202	Vadose Zone Soil	MKSTNAERMNLPIRELPRAESCGNVMNFRAQWQTAVETVSGHALQKLRLELAHSVSELLLTSTHRSNDNDRSINIVRPSHLPFSA*
Ga0137366_100655675	3300012354	Vadose Zone Soil	MNSTNAERVNLPMRESVRAESCDRVTNFRARWQTAVETVSRYALQKLRLELAASVSKFLGTSTHGSNDNDRSINIVRPSHLPVSA*
Ga0126375_107671073	3300012948	Tropical Forest Soil	PIRELLPTKSRADAMTFRARWQTAVETVSGHVLQKLRLELAHSVSELLLTSTHGSNDNDRILNLLRPSHLPVSA*
Ga0126375_112215311	3300012948	Tropical Forest Soil	MNRPIRQLLRAESRAGVTIFHTRWQTAVETVSGHALQKLRLEFTHPVSELLLTSTHRSNNNDRNLNLVRTPHLPVSA*
Ga0126375_112725961	3300012948	Tropical Forest Soil	MNLRIRELLPAESRADAMTFRARWQTAVETVSGHALHKLRLELAHSVSELLLTSTHGSNDHDRNLNLLRPS
Ga0126369_116912891	3300012971	Tropical Forest Soil	TRSITGARGPVAFHATGGSPQRTAIQSLNACKRADIMNSTNADRVDLPMRESVRAESCDRVTKFRARWQTAVETVSGYALQKLRLELSSSVSKLLGTSTHGSNDNDCSIIVRPSHLPVSA
Ga0126369_133338431	3300012971	Tropical Forest Soil	MNSTIAEQINVPIRESLRTESRATALNFRARWQTAFETESGHALQKLRLESVPSVSELLLNSTHGSNDNDRSINILRPSYLPAST*
Ga0164308_121756902	3300012985	Soil	MNSTSAERVNLMMRESVQAERCDRVINFRVRWQTALETVSGYALQKLRFELAPSVSKLLGISTHGSNDNDRSINIVRPSHLPVSA*
Ga0163162_131220031	3300013306	Switchgrass Rhizosphere	RRKRAEIMNSNVTNFRARWQTAVETASGYALHKLRLELLPQFQNYSLTLTHVSNDNDRNINILRPSHLPVSA*
Ga0157375_117148442	3300013308	Miscanthus Rhizosphere	MNSKTAQLINLRIRELLPAKSPADAMRLRARWQTAVETVSGHALQKLRLELAPSVSKFLGTSTHRSNDNDRSIHIVRPSHLPVSA*
Ga0132258_108333394	3300015371	Arabidopsis Rhizosphere	MNSNVTNFRAHWQTAVETASGYALHKLRLELLPQFQNYSLTSTHGSNDNVRNINILRPSHLPVSP*
Ga0132255_1004543714	3300015374	Arabidopsis Rhizosphere	MNSKNAQLMNLPIRELLPAKSPADAMTFHARWQTAVETVSGYTLQKLRLEFAPSVSKFLGASTHGSNNNDRSINIVCPSHL
Ga0182036_100158171	3300016270	Soil	MNSKKAQPMNLPIRELLPTESPANAMRLRARWQTAVETVSGHTLQKLRLELALSVSELLLTSTHGSNDNDCCINIVCPSH
Ga0182036_108789461	3300016270	Soil	TNAERINLPMRESVRAENCHRVINFRVRWQTAVETLSGRALQKIRLEFTPLSERLTSTHRSNGNDRSVNIVRPSHLPVSA
Ga0182033_100478673	3300016319	Soil	MNSKKAQLINLRIPELLPAKSPADAMRLRARWQTAVETVSGHALQKLRVELAHSVSELLLTSTHGSNDHDRNLNLLRPSHLPVSA
Ga0182035_106322261	3300016341	Soil	MNAKKAQLINLRVPELLPAKSPADAMRLRARWQTAVETVSGHALQKLRLELAQSVSELLLTSTHGSNDHDRN
Ga0182035_121038131	3300016341	Soil	IRELLPTESPANAMRLRARWQTAVETVSGHTLQKLRLELAQSVSELLLTSTHGSNDHDRNLNLLRPSHLPVSA
Ga0182032_100324645	3300016357	Soil	MNAKKAQLINLRVPELLPAKSPADAMRLRARWQTAVETVSGHALQKLRLELAQSVSELLLTSTHGSNDHDRNLNLLRPSHLPASA
Ga0182034_101196043	3300016371	Soil	AEIMNSKKAQPMKQPIRELLPTESPANAMRLRARWQTAVETVSGHTLQKLRLELALSVSELLLTSTHGSNDHDRNLNLLRSSHLPVSA
Ga0182040_101453312	3300016387	Soil	MNPTRVQPLNLPIRELQLADSRAEAMTFRARWQATVETVSGHALQKLRLELAPSVSKFLGTSTHGSNDNDCSINIVRPSHLPVSA
Ga0182037_100461421	3300016404	Soil	MNSKKAQLINLRIPELLPAKSPADAMRLRARWQTAVETVSGHALQKLRVELAHSVSELLLTSTHGSNDHDRNLNLLRSSHLPVSA
Ga0182037_107556681	3300016404	Soil	MNSTGVQPLNLPNRELLSADSRAEAMTLRARWQATVETVSGHTLQKLRLELAPSVSELLLTSTHGSNGNDRSINIVRTSHLPVSA
Ga0182039_100687016	3300016422	Soil	MNAKKAQLINLRVPELLPAKSPADAMRLRARWQTAVETVSGHALQKLRVELAHSVSELLLTSTHGSNDHDRNLNLLRPSHLPVSA
Ga0182038_104331401	3300016445	Soil	MNSKKAQLINLPIRELLPVKSRADAMRLRARWQTAVQTVSGHALQKLRLELAHSVSELLLTSTHGSNDHDRNLNLLRSSHLPVSA
Ga0182038_117567971	3300016445	Soil	AGSPERTAAQPPNRRKGAEIMNYTNAGQLNLPIRKLLRTESHAGVVSFRARWQTAVETVSGHALQKLRLELAHSVSELLLTSTHRSNDNDRSITIVRPSHLPVSA
Ga0182038_121136321	3300016445	Soil	MNSKKAQLINLRIPELLPAKSPADAMRLRARWQTAVETVSGHALQKLRLELAQSVSELLLTSTHGSNDHDRNLNLLRPSHLPVSA
Ga0173481_102512871	3300019356	Soil	MNSKTAQLINLRIRELLPAKSPADAMRLRARWQTAVETVSGHALQKLRLELAPSVSKFLGTSTHGSNDNDRNLNLLRPSHLPVSA
Ga0126371_101468774	3300021560	Tropical Forest Soil	MNSTRVQPLNLPIRELQLADSRAEAMTFRARWQATVETVSGHALQKLRLELAPSVSKFLGTSTHGSNDNDRSINIVRPSHLPVSA
Ga0126371_103308221	3300021560	Tropical Forest Soil	AGGNPERTAIEPLNTCKNAETMNSTKAQLMNLPIRESVRAESCDRAINFRARWQTTIETVSGYALQKLRLELTSSVSKLLATSTHGSNDNDCSIIVRPSHLPVSA
Ga0207663_104176722	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MNSTNTERTNLPIREVLPAENFGHVNNFRARWQTAVETISGYELQKLRLELAPSVSKFLGTSTHGSNDNDRSIHIVRPSHLPVSA
Ga0207659_118586281	3300025926	Miscanthus Rhizosphere	AQLINLRIRELLPAKSPADAMRLRARWQTAVETVSGHALQKLRLELAPSVSKFLGTSTHGSNDNDRSIHIVRPSHLPVSA
Ga0207701_100232526	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MNSKTAQLINLRIRELLPAKSPADAMRLRARWQTAVETVSGHALQKLRLELAPSVSKFLGTSTHGSNDNDRSIHIVRPSHLPVSA
Ga0207701_101124593	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MNSNVTNFRARWQTAVETASGYALHKLRLELLPQFQNYSLTLTHGSNDNDRNINILRPSHLPVSA
Ga0138301_16175552	3300031022	Soil	MKSTNAERMNLPIRELPRAESCGDVMNFRAQWQTAVETVSGHVLQKLRLELAHSVSELLLTSTHRSNDNDRSINIVRPSHLPFSA
Ga0170824_1031481383	3300031231	Forest Soil	MNSTSAERVNLMMRESVQAERCDRVINFRVRWQTAVETVSGYALQKLRFELAPSVSKLLGISTHGSNDNDCSINIVRPSHLPVSA
Ga0306918_102937153	3300031744	Soil	MNSKKAQPMNLPIRELLPTESPANAMRLRARWQTAVETVSGHTLQKLRLELALSVSELLLTSTHGSNDHDRNLNLLRPSHLPVSA
Ga0310917_110577172	3300031833	Soil	MNAKKAQLINLRVPELLPAKSPADAMRLRARWQTAVETVSGHALQKLRLELAQSVSELLLTSTHGSNDHDRNLNLLRPSHLPVSA
Ga0306925_102239363	3300031890	Soil	MNSKKAQPMNLPIRELLPTESPANAMRLRARWQTAVETVSGHTLQKLRLELALSVSELLLTSTHGSNDHDRNLNLLRSSHLPVSA
Ga0306925_102510651	3300031890	Soil	MNLPIRELLPAESGAEAMTLRARWQATVETVSGHTLQKLRLELAPSVSELLLTSTHGSNGNDRSINIVRTSHLPVSA
Ga0306925_102769191	3300031890	Soil	MNYTNAGQLNLPIRKLLRTESHAGVVSFRARWQTAVETVSGHALQKLRLELAHSVSELLLTSTHRSNDNDRSITIVRPSHLPVSA
Ga0306925_104468983	3300031890	Soil	MNSTNADRVNLPMRETVRAESCDRAINFRARWQTAVETVSGYALQKLRLELTSSVSKFLGTSTHGSNDNDCSINIVRPSHLPVSA
Ga0306923_102921632	3300031910	Soil	MNSKKAQLINLRIPELLPAKSPADAMRLRARWQTAVETVSGHALQKLRVELAHSVSELLLTSTHRSNDNDRSITIVRPSHLPVSA
Ga0306921_123641852	3300031912	Soil	MNSKKAQLINLRIPELLPAKSPADAMRLRARWQTAVETVSGHALQKLRVELAHSVSELLLTSTHGSNDHDRNLNLLRPSHLPASA
Ga0310916_112514911	3300031942	Soil	MNSTRVQPLNLPIRELQLADSRAEAMTFRARWQATVETVSGHALQKLRLELAPSVSKFLGTSTHRSNDNDRSINIVRPSHLPVS
Ga0310910_111900741	3300031946	Soil	MNSKKAQPMNLPIRELLPTESPANAMRLRARWQTAVETVSGHTLQKLRLELALSVSELLLTSTHGSNDH
Ga0306926_129898231	3300031954	Soil	MNSTNADRVNLPMRETVRAESCDRAINFRARWQTAVETVSGYALQKLRLELTSSVSKLLGTSTHGSNDNDCSIIVRPSHLPVS
Ga0306922_111083492	3300032001	Soil	MNPTNAERINLPMRESVRAENCDRVINFRVRWQTAVETLSGRALQKIRLEFTPLSERLTSTHRSNGNDRSVNIVRPSHLP
Ga0306924_102384153	3300032076	Soil	TAIEPLNACKGAEIMNSTRVHLMNLPIRELLPAESGAEAMTLRARWQATVETVSGHTLQKLRLELAPSVSELLLTSTHGSNDHDRNLNLLRSSHLPVSA
Ga0306924_109667223	3300032076	Soil	MNYTNAGQLNLPIRKLLRTESHAGVVSFRARWQTAVETVSGHALQKLRLELAHSVSELLLTSTHRSNDNDRSITIVRP
Ga0306920_1000177794	3300032261	Soil	MNSATAELMNLPTPESPRADSCNDVTSLRARWQTAVETVSGYASQKLRLDLTRFHNYSPSTHGSNDNDRSINIVRPSHLPVSA
Ga0335077_121278992	3300033158	Soil	MNPTNPERMNLPVQELLRAESSGGVINFRERWQTAVETVSGPALQKLRLELAHSVSELLLTSTHGSNDNDRSIN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084744

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences