Metagenome Family F084745

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F084745
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	88 residues
Representative Sequence	MNQYDARQQFIEGLDRYVSGIETDDRLQRLATNVSAYHDRMPSEACDLVSAIVWPMRRFTNSYAGASEVLLQRLRAVAPKSKPAGK
Number of Associated Samples	53
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.62 %
% of genes near scaffold ends (potentially truncated)	16.96 %
% of genes from short scaffolds (< 2000 bps)	84.82 %
Associated GOLD sequencing projects	46
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (73.214 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds (40.179 % of family members)
Environment Ontology (ENVO)	Unclassified (64.286 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (40.179 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.37% β-sheet: 0.00% Coil/Unstructured: 52.63%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF13202	EF-hand_5	6.25
PF09926	DUF2158	4.46
PF13405	EF-hand_6	3.57
PF07077	DUF1345	1.79
PF13499	EF-hand_7	1.79
PF03548	LolA	1.79
PF05532	CsbD	0.89
PF05193	Peptidase_M16_C	0.89
PF03459	TOBE	0.89
PF01068	DNA_ligase_A_M	0.89
PF03625	DUF302	0.89
PF01641	SelR	0.89
PF03734	YkuD	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG2834	Outer membrane lipoprotein-sorting protein	Cell wall/membrane/envelope biogenesis [M]	1.79
COG4291	Uncharacterized membrane protein	Function unknown [S]	1.79
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	0.89
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.89
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.89
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.89
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.89
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.89
COG3439	Uncharacterized conserved protein, DUF302 family	Function unknown [S]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.21 %
All Organisms	root	All Organisms	26.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.21 %
cellular organisms	root	All Organisms → cellular organisms	25.89 %
Viruses	superkingdom	All Organisms → Viruses	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.21 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.21 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	19.64 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.21 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19.64 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.21 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.29 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.89 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.89 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.21 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	9.82 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.89 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.21 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	5.36 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	3.57 %
Aphanizomenonaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae	0.89 %
Aliidongia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Aliidongia	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.21 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	5.36 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	3.57 %
Aliidongia dinghuensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Aliidongia → Aliidongia dinghuensis	0.89 %
Sphaerospermopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Sphaerospermopsis	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.21 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	5.36 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	3.57 %
unclassified Sphaerospermopsis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Sphaerospermopsis → unclassified Sphaerospermopsis	0.89 %
Aliidongia dinghuensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Aliidongia → Aliidongia dinghuensis	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.21 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	5.36 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	3.57 %
Sphaerospermopsis sp. SIO1G2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Sphaerospermopsis → unclassified Sphaerospermopsis → Sphaerospermopsis sp. SIO1G2	0.89 %
Aliidongia dinghuensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Aliidongia → Aliidongia dinghuensis	0.89 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.89 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_100529536	All Organisms → cellular organisms → Bacteria	1811	Open in IMG/M
3300005332\|Ga0066388_102224887	Not Available	990	Open in IMG/M
3300005439\|Ga0070711_100163690	Not Available	1688	Open in IMG/M
3300005617\|Ga0068859_103094927	Not Available	507	Open in IMG/M
3300006041\|Ga0075023_100028420	Not Available	1624	Open in IMG/M
3300006041\|Ga0075023_100377472	Not Available	607	Open in IMG/M
3300006047\|Ga0075024_100017258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	2903	Open in IMG/M
3300006047\|Ga0075024_100087377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Aliidongia → Aliidongia dinghuensis	1352	Open in IMG/M
3300006047\|Ga0075024_100730454	Not Available	547	Open in IMG/M
3300006047\|Ga0075024_100778207	Not Available	533	Open in IMG/M
3300006050\|Ga0075028_100101764	Not Available	1467	Open in IMG/M
3300006050\|Ga0075028_100511186	Not Available	703	Open in IMG/M
3300006050\|Ga0075028_100675723	Not Available	619	Open in IMG/M
3300006050\|Ga0075028_100881339	Not Available	550	Open in IMG/M
3300006052\|Ga0075029_100063153	All Organisms → cellular organisms → Bacteria	2163	Open in IMG/M
3300006052\|Ga0075029_100764325	Not Available	655	Open in IMG/M
3300006052\|Ga0075029_101355096	Not Available	500	Open in IMG/M
3300006059\|Ga0075017_100099468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2024	Open in IMG/M
3300006059\|Ga0075017_100279564	Not Available	1227	Open in IMG/M
3300006059\|Ga0075017_100358809	Not Available	1086	Open in IMG/M
3300006059\|Ga0075017_100441270	Not Available	981	Open in IMG/M
3300006059\|Ga0075017_100877298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	696	Open in IMG/M
3300006086\|Ga0075019_10215363	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300006086\|Ga0075019_10361752	Not Available	882	Open in IMG/M
3300006086\|Ga0075019_10411742	Not Available	829	Open in IMG/M
3300006086\|Ga0075019_10737641	Not Available	625	Open in IMG/M
3300006102\|Ga0075015_100063207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1783	Open in IMG/M
3300006102\|Ga0075015_100073555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1669	Open in IMG/M
3300006102\|Ga0075015_100439135	Not Available	743	Open in IMG/M
3300006162\|Ga0075030_101541017	Not Available	520	Open in IMG/M
3300006163\|Ga0070715_11051722	Not Available	510	Open in IMG/M
3300006172\|Ga0075018_10068489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1518	Open in IMG/M
3300006172\|Ga0075018_10822076	Not Available	511	Open in IMG/M
3300006172\|Ga0075018_10849169	Not Available	504	Open in IMG/M
3300006354\|Ga0075021_10445481	Not Available	816	Open in IMG/M
3300006354\|Ga0075021_10827665	Not Available	599	Open in IMG/M
3300006854\|Ga0075425_102552173	Not Available	565	Open in IMG/M
3300006904\|Ga0075424_101548031	Not Available	703	Open in IMG/M
3300009101\|Ga0105247_11052566	Not Available	639	Open in IMG/M
3300010379\|Ga0136449_101049951	Not Available	1304	Open in IMG/M
3300010379\|Ga0136449_101119611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1250	Open in IMG/M
3300010379\|Ga0136449_101122503	Not Available	1248	Open in IMG/M
3300012984\|Ga0164309_11932488	Not Available	506	Open in IMG/M
3300012985\|Ga0164308_10106549	Not Available	1984	Open in IMG/M
3300012987\|Ga0164307_10111284	Not Available	1736	Open in IMG/M
3300012987\|Ga0164307_10732978	Not Available	778	Open in IMG/M
3300015371\|Ga0132258_13626677	Not Available	1055	Open in IMG/M
3300015371\|Ga0132258_13986219	Not Available	1002	Open in IMG/M
3300015374\|Ga0132255_103382422	Not Available	679	Open in IMG/M
3300017821\|Ga0187812_1012778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Sphaerospermopsis → unclassified Sphaerospermopsis → Sphaerospermopsis sp. SIO1G2	2918	Open in IMG/M
3300017821\|Ga0187812_1276785	Not Available	534	Open in IMG/M
3300017822\|Ga0187802_10193530	Not Available	781	Open in IMG/M
3300017823\|Ga0187818_10018719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2963	Open in IMG/M
3300017823\|Ga0187818_10350079	Not Available	652	Open in IMG/M
3300017823\|Ga0187818_10480826	Not Available	556	Open in IMG/M
3300017926\|Ga0187807_1289324	Not Available	543	Open in IMG/M
3300017932\|Ga0187814_10089848	Not Available	1131	Open in IMG/M
3300017932\|Ga0187814_10175388	Not Available	802	Open in IMG/M
3300017933\|Ga0187801_10035513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1768	Open in IMG/M
3300017933\|Ga0187801_10192067	Not Available	807	Open in IMG/M
3300017937\|Ga0187809_10082218	Not Available	1064	Open in IMG/M
3300017937\|Ga0187809_10212395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	690	Open in IMG/M
3300017939\|Ga0187775_10424173	Not Available	555	Open in IMG/M
3300017942\|Ga0187808_10126328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1120	Open in IMG/M
3300017943\|Ga0187819_10363054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	836	Open in IMG/M
3300017943\|Ga0187819_10363245	Not Available	835	Open in IMG/M
3300017947\|Ga0187785_10657859	Not Available	545	Open in IMG/M
3300017955\|Ga0187817_10242265	Not Available	1149	Open in IMG/M
3300017955\|Ga0187817_10249460	Not Available	1131	Open in IMG/M
3300017955\|Ga0187817_11145328	Not Available	500	Open in IMG/M
3300017959\|Ga0187779_10395986	Not Available	899	Open in IMG/M
3300017959\|Ga0187779_10425924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	869	Open in IMG/M
3300017959\|Ga0187779_10463946	Not Available	834	Open in IMG/M
3300017959\|Ga0187779_10735122	Not Available	669	Open in IMG/M
3300017961\|Ga0187778_11267935	Not Available	518	Open in IMG/M
3300017966\|Ga0187776_10099758	Not Available	1728	Open in IMG/M
3300017974\|Ga0187777_10077128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	2169	Open in IMG/M
3300017974\|Ga0187777_10116559	Not Available	1765	Open in IMG/M
3300017974\|Ga0187777_10201616	Not Available	1341	Open in IMG/M
3300017974\|Ga0187777_10300804	All Organisms → Viruses → Predicted Viral	1096	Open in IMG/M
3300017974\|Ga0187777_10502144	Not Available	848	Open in IMG/M
3300017995\|Ga0187816_10405653	Not Available	606	Open in IMG/M
3300018006\|Ga0187804_10042274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1759	Open in IMG/M
3300018007\|Ga0187805_10267335	Not Available	785	Open in IMG/M
3300018064\|Ga0187773_11046821	Not Available	538	Open in IMG/M
3300025906\|Ga0207699_10816293	Not Available	686	Open in IMG/M
3300027894\|Ga0209068_10073909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1765	Open in IMG/M
3300027894\|Ga0209068_10082911	All Organisms → cellular organisms → Bacteria	1671	Open in IMG/M
3300027894\|Ga0209068_10236724	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300027898\|Ga0209067_10078525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1698	Open in IMG/M
3300027898\|Ga0209067_10201588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1070	Open in IMG/M
3300027898\|Ga0209067_10228166	Not Available	1008	Open in IMG/M
3300027898\|Ga0209067_10248760	Not Available	967	Open in IMG/M
3300027898\|Ga0209067_10286363	Not Available	903	Open in IMG/M
3300027910\|Ga0209583_10019410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2131	Open in IMG/M
3300027911\|Ga0209698_10184664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1694	Open in IMG/M
3300027911\|Ga0209698_10678733	Not Available	786	Open in IMG/M
3300027915\|Ga0209069_10007930	All Organisms → cellular organisms → Bacteria	5249	Open in IMG/M
3300027915\|Ga0209069_10164756	Not Available	1111	Open in IMG/M
3300032160\|Ga0311301_10885915	Not Available	1206	Open in IMG/M
3300032829\|Ga0335070_11523984	Not Available	609	Open in IMG/M
3300032892\|Ga0335081_10144000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	3425	Open in IMG/M
3300032892\|Ga0335081_11307006	Not Available	818	Open in IMG/M
3300032893\|Ga0335069_10417779	Not Available	1571	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.75%
Host-Associated	Host-Associated	6.25%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	64.29%
Terrestrial	Environmental → Terrestrial	29.46%
Plants	Host-Associated → Plants	6.25%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Sediment	40.18%
Soil	Environmental → Terrestrial → Soil	29.46%
Freshwater	Environmental → Aquatic → Freshwater	24.11%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified	40.18%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	24.11%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	16.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	7.14%
Loam	Environmental → Terrestrial → Soil → Loam	5.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.68%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	40.18%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	24.11%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	16.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.14%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	40.18%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	24.11%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	13.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.57%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.68%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1005295364	3300005332	Tropical Forest Soil	MNQYDARQQFIEGLDRYVSGIETDDGLQKLASNVSAYHDRLPSDAIDLVTAIVWPLRRFTNSYAGASEILRERLQTRKANS*
Ga0066388_1022248872	3300005332	Tropical Forest Soil	MNQYDARQQFIEGLDRYLSGIETDDGLARLATHVGAFHGRLPTDAGGLVSAIVRPLRHFTNSYAGASEVLREQLCARARNRKVAGKRE*
Ga0066388_1074013101	3300005332	Tropical Forest Soil	ARQQFIEGLERYVSGIETDDGLTRLADHVSRYHDRMPSDAIGLVSAIVWPLRRFTNSYAGASEVLRARLRQRASGGKALSSPKPKIPVPPRGH*
Ga0070711_1001636903	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MNQYDARQQFIEGLDRYVSGIETDDGLERLATNVSNYHDRMPSDAAGLVSAIVWPVRRFTNSYAGASEVLLQRLRAVAPKRPVTAGKRR*
Ga0068859_1030949272	3300005617	Switchgrass Rhizosphere	MHQYDPRQQFIEELERYVSGIENDDVLTRLADHVSRYHDRMPSDAYEMVSAIVWPLRRFTNTHAGASEVLRERFRARAESKPPKRR*
Ga0075023_1000284202	3300006041	Watersheds	MNQYDARQQFIEGLDRYVSGIETDDRLQRLATNVSAYHDRMPSEACDLVSAIVWPMRRFTNSYAGASEVLLERFRMIGRDGGKPAANRK*
Ga0075023_1003774721	3300006041	Watersheds	MNHYDPRQQFIEDLDRYVSGIETDDRLLRLATNVSAYHDRMPSEACDMVGAIVWPVRRLTNSYAGASEVLLQRLRAIASQRADPAGKRK*
Ga0075024_1000172582	3300006047	Watersheds	MHTYDPRQQFVDGLERYVSGIETDDGLLRLAKNVSKYHDRLPSDACGLVSAIVYPRHRFTASYAGASEIVLERLKANAFPKRQ*
Ga0075024_1000873772	3300006047	Watersheds	MNHYDPRQQFIEDLDRYVSGIETDDRLLRLATNVSAYHDRMPSEACDMVGAIVWPVRRFTNSYAGASEVLLQRLRAIASQRADPAGKRK*
Ga0075024_1007304542	3300006047	Watersheds	MNQYDARQQFIEGLDRYISGIETDDRLQRLATNVSAYHDRMPSEACDLVSAIVWPMRRFTNSYAGASEVLLERFRMIGRDGGKPAANRK*
Ga0075024_1007782071	3300006047	Watersheds	MNQYDARQQFVEGLDRYLSGIETEDGLSRLAANVSKYHDRLPADACELVSAIVWPLRRFTNSYAGASEVLRQRLRQRASDAKPEGPQQQPPRGD*
Ga0075028_1001017642	3300006050	Watersheds	MNHYDPRQQFIEDLDRYVSGIETDDRLLRLATNVSAYHDRMPSEACDMVGAIVCPVRRFTNSYAGASEVLLQRLRAIASQRADPAGKRK*
Ga0075028_1005111862	3300006050	Watersheds	MNQYDARQQFVEGLDRYLSGIETEDGLSRLAANVSKYHDRLPADACELVSAIVWPLRRFTNSYAGASEVLRERLRQRASDAKPEGPQQQPPRGD*
Ga0075028_1006757232	3300006050	Watersheds	MNQYGARQQFIEGLDRYVSGIETDDRLQRLATNVSAYHDRMPSEACDLVSAIVWPMRRFTNSYAGASEVLLQRLRAVAPKGDKSAM*
Ga0075028_1008813391	3300006050	Watersheds	MNQYDARQQFVDGLDRYVSGIETDERLQRLATNVSAYHDRMPSEACDLVSAIVWPVRRFTNSYAGASEVLLQRLRMIASQRADPASKRK*
Ga0075029_1000631533	3300006052	Watersheds	MNRYGDRQQFIEGLERYVSGIESDQGLSRLAENVSQYHDRIPSDACGLVSLIVWPRRRFTASYAGASEIVLERLKANVLPAKLPAREISKYAAKRT*
Ga0075029_1007643253	3300006052	Watersheds	MNQYDARQQFIEGLDRYVSGIETDDRLQRLATNVSAYHDRMPSEACDLVSAIVWPMRRFTNSYAGASEVLLQRLRAVAPKSKPAGKMEGSEGDD*
Ga0075029_1013550962	3300006052	Watersheds	DGLERYVSGIETDDGLHRLAEHVSKYHDRLPSEACELVSAIVWPRRRFTNSFAGASEIVRERLKASVFPKKPT*
Ga0075017_1000994683	3300006059	Watersheds	MNQYDARWQFIEGLDRYVSGIETDDGLQRLATNVRTYHDRMPSEACDLVTAIVWPVRRFTNSYAGASEVLLQRLREVAPERAVIADKRK*
Ga0075017_1002795642	3300006059	Watersheds	MHSYDPRQQFLDGLERYVSGIETDDGLHRLAEHVSKYHDRLPSEACELVSAIVWPRRRFTNSFAGASEIVRERLKASVFPKKPT*
Ga0075017_1003588094	3300006059	Watersheds	MHSYDPRQQFVDGLERYVSGIETDDGLHRLAEHVSKYHDRLPPEACELVSVIVWPRRRFTNSYAGASEIVRERLKASVFPKKPT*
Ga0075017_1004412704	3300006059	Watersheds	MNQYDARQQFIEGLDRYVSGIETDDRLQRLATNVSAYHDRMPSEACDLVSAIVWPMRRFTNSYAGASEVLLQRLRAVAPKSSKPR*
Ga0075017_1008772981	3300006059	Watersheds	MNQYDARHQFIEGLERYVAGIESDQRLSRLAENVRAYHDRMPSDACGLVGAIVWPRRRFTASYAGASEIVLERLRTIGQESSKPAGKRK*
Ga0075019_102153634	3300006086	Watersheds	VDGLERYVSGIETDDGLHRLAEHVSKYHDRLPSEACELVSAIVWPRRRFTNSFAGASEIVRERLKASVFPKKPT*
Ga0075019_103617523	3300006086	Watersheds	MNQYDARQQFIEGLDRYISGIETDDRLQRLATNVSAYHDRMPSEACDLVSAIVWPMRRFTNSYAGASEVLLQRLRAVAPKGDKSAM*
Ga0075019_103813423	3300006086	Watersheds	QYDARQQFIEGLERYVSGIENDDGLTRLADHVSKYHDRMPSDAYETVSAIVWPVRRFTNSYASASEVLREQFRQRSPEGKPAGSQHGKIPLPPRGH*
Ga0075019_104117422	3300006086	Watersheds	MNHYDARQQFVEGLDRYLSGIETEDGLSRLAANVSKYHDRLPADACELVSAIVWPLRRFTNSYAGASEVLRERLRQRASDAKPEGPQQQPPRGD*
Ga0075019_107376412	3300006086	Watersheds	MHSYDARQQFIEGLELYVSGIETDEGLSRLAQNVSKYHDPIPSDACTLVGAIVRPRRRFTNSYAGAAEILLERFRARWRESGKHAAK*
Ga0075015_1000632075	3300006102	Watersheds	MHSYDPRQQFVDGLERYVSGIETDDGLHRLAEHVSKYHDRLPSEACELVSAIVWPRRRFTNSFAGASEIVRERLKASVFPKKPT*
Ga0075015_1000735554	3300006102	Watersheds	MNQYDARQQFIEGLDRYVSGIETDDRLQRLATNVSAYHDRMPSEACDLVSAIVWPMRRFTNSYAGASEVLLQRLRAVAPKGDKSAM*
Ga0075015_1004391352	3300006102	Watersheds	MHAYDPRQQFIDGLERFVSGIETDDGLHRLAEHVRKYHDRLPSEACDLVSAIVWPRRRFTNSFAGASEILLQRLREVAPSAM*
Ga0075030_1015410172	3300006162	Watersheds	MNQYDARQQFVDGLDRYVSGIETDERLQRLATNVSAYHDRMPSEACDLVSAIVWPVRRFTNSYAGASEVLLQRLRMIASQRADPASKR
Ga0070715_110517222	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MNQYDARQQFIEGLDRYVSGIETDDGLERLATNVSNYHDRMPSHAAGLVSAIVWPVRRFTNSYAGASEVLLQRLREVTPERGVT
Ga0075018_100684893	3300006172	Watersheds	MNQYDARQQFIEGLDRYVSGIETDDRLQRLAMHVSAYHDRMPSDACDLVSAIVWLMRRFTHSYAGASEVLLERFRMIGRDGGKPAANRK*
Ga0075018_108220762	3300006172	Watersheds	VDGLERYVSGIETDDGLHRLAEHVSKYHDRLPPEACELVSVIVWPRRRFTNSYAGASEIVQERLKASVFPKKPT*
Ga0075018_108491692	3300006172	Watersheds	TMHTYDPRKQFVDGLERYVSGIETDEGLQRLAEHVSKYHDRLPSEVCDLVSVIVWPRHRFTNSYAGASEIVRERLKASVFARKPT*
Ga0075021_104454812	3300006354	Watersheds	MHSYDPRQQFVDGLERYVSGIETDDGLHRLAEHVSKYHDRLPPEACELVSVIVWPRRRFTNSFAGASEIVRERLKASVFPKKPT*
Ga0075021_108276651	3300006354	Watersheds	MHAYDPRQQFIDGLERFVSGIETDDGLHRLAEHVRKYHDRLPSEACDLVSAIVWPRRRFTNSFASASEVLLQRLREVAPSAM*
Ga0075425_1025521731	3300006854	Populus Rhizosphere	MNTYDPRRQFVEGLDRYVSGIETDDGLQKLAANVSAYHDRLPSDAIGLVSAIVWPLRRFTNSYAGASEVLRERFKARTTRESEKGK*
Ga0075424_1015480312	3300006904	Populus Rhizosphere	MNQYDARQQFIEGLDRYVSGIETDDGLQQLASNVSTYHDRLPTEAIGMVSAIVWPLRRFTNSYAGASEVLRERLRARASKKQT*
Ga0105247_110525662	3300009101	Switchgrass Rhizosphere	MNQYDARQQFIEGLDRYVSGIETDDGLQRLASNVSAYHDRLPSEAIDLVSTIVWPLRRFTNSYAGASEILRERFQRRRANS*
Ga0136449_1010499513	3300010379	Peatlands Soil	MNQYDARQQLIEGLDRYVTGIETDYRLQRLATNVSAYHDRMPSEACDLVSAIVWPMRRFTNSYAGASEVLLQRLRAVAPKSSEPAGKREGSEGDD*
Ga0136449_1011196111	3300010379	Peatlands Soil	YDPRQQFIDGLERYVSGIETDDGLHRLAEHVSKYHDRLPPEACELVSVIVWPRRRFTNSYAGASEIVRERLKASVFPKKPT*
Ga0136449_1011225033	3300010379	Peatlands Soil	MHAYDAKQQFIDGLERYVSGIETDEGLVRLARNVSADHERMPYEACSLVCSIVWPRRRFTASYAGASEIVLERLRTIGQEKGKPGGKRR*
Ga0164309_119324882	3300012984	Soil	MNHYDPRQQFIEGLDRYVSGIETDDRLLRLATNVSAYHDRMPSEACDMVGAIVWPVRRFTNSYAGASEGLLQRLRAIASQRARHVGKQSLASAAVEP
Ga0164308_101065494	3300012985	Soil	MNHYDPRQQFIEGLDRYVSGIETDDRLLRLATNVSAYHDRMPSEACDMVGAIVWPVRRFTNSYAGASEVLLQRLRAIASQRADPAGKRK*
Ga0164307_101112844	3300012987	Soil	MNHYDPRQQFIEGLDRYVSGIETDDRLLRLATNVSAYHDRMPSEACDMVGAIVWPVRRFTNSYAGASEVLLQRLRAIASQRAEPAGKRK*
Ga0164307_107329783	3300012987	Soil	MNQYDARQQFIEGLDRYISGIETDEGLQRLATNVRIYHDRMPSDACDLVSAIVWPVRRFTNSYAGASEVLLQRLRAVAPERAVTAAKRT*
Ga0132258_136266774	3300015371	Arabidopsis Rhizosphere	MNQFDARQQFIEGLDRYLSGIETDDGLARLATNVSAYHDRLPTDAIGLVSAIVRPLRRFTNTYAGASEVLRERFRARTAKKAP*
Ga0132258_139862192	3300015371	Arabidopsis Rhizosphere	MNTYDPRRQFIEGLDRYLSGIETDDGLQRLANNVSAYHDRLPTDAIGLVTAIAWPLRRFTNSYAGASEVLRERLRARSAITKTR*
Ga0132255_1033824222	3300015374	Arabidopsis Rhizosphere	LGRLTREEAAMNQYDARQQFIEGLDRYVSGIETDDGLQRLASNVSAYHDRLPSEAIDLVSTIVWPLRRFTNSYAGASEILRERFQRRRANS*
Ga0187812_10127783	3300017821	Freshwater Sediment	MNQYDARQQFIEGLDRYLSGIETDDRLQRLATNVSAYHDRMPSEACDMVSTIVWPIRRFTNSYAGASEVLLERFRMIGRDGGKPAGKRK
Ga0187812_12767851	3300017821	Freshwater Sediment	MHTYDPRQQFIDGLERYVSGIETDGGLQRLAENVSKYHDRLPSEACDLVSAIVRPRRRFTNSYAGASEIVRERFRAIGREHGRPAAKSK
Ga0187802_101935302	3300017822	Freshwater Sediment	MHTYDPRQQFIDGLERYVSGIETDGGLQRLAENVSKYHDRLPSEACDLVCAIAWPRRRFTNSYAGASEIVRERFRAIGREHGKPAAKSK
Ga0187818_100187194	3300017823	Freshwater Sediment	MHTYDPRQQFIDGLERYVSGIETDGGLQRLAENVSKYHDRLPSEACDLVCAIAWPRRRFTNSYAGASQIVRERLKASVFPKKPT
Ga0187818_102364061	3300017823	Freshwater Sediment	MSEEAMMNQYDPRQQFIEGLERYVSGIENDDGLTRLADHVSKYHDRMPSDAYETVSAIVWPVRRFTNSYASASEVLRERFRQRSPDGKPAGSQHGKIPFPPRGH
Ga0187818_103500793	3300017823	Freshwater Sediment	MHTYDPRQQFIDGLERYVSGIETDGGLHRLAENVRAYHDPMPSEACDLVSTIVWPLRRFTNSYAGASEILLERFRAARESGKRAVK
Ga0187818_104808262	3300017823	Freshwater Sediment	MNQYDARQQFIEGLDRYVSGIETDDRLQRLATNVSAYHDRMPSEACDLVSAIVWPVRRFTNSYAGASEVLLERFRTIGRDGGKPAANRK
Ga0187807_12893242	3300017926	Freshwater Sediment	MNQYDARQQFIDGLDRYLSGIETDDRLQRLATNVSAYHDRMPSEACDMVSTIVWPIRRFTNSYAGASEVLLERFRMIGRDGGKPAGKRK
Ga0187814_100898482	3300017932	Freshwater Sediment	MIASKEVPMNQYDARQQFIEGLDRYLSGIETDDRLQRLATNVSAYHDRMPSEACDMVSTIVWPIRRFTNSYAGASEVLLERFRMIGRDGGKPAGKRK
Ga0187814_101753881	3300017932	Freshwater Sediment	MMHTYDPRQQFIDGLERYVSGIETDGGLHRLAENVRAYHDPMPSEACDLVSTIVWPLRRFTNSYAGASEILLERFRAARESGKRAVK
Ga0187801_100355132	3300017933	Freshwater Sediment	MHTYDPRQQFIDGLERYVSGIETDGGLQRLAENVSKYHERLPSEACDLVCAIAWPRRRFTNSYAGASQIVRERLKASVFPKKPT
Ga0187801_101894312	3300017933	Freshwater Sediment	MSEEAMMNQYDARQQFIEGLERYVSGIENDDGLTRLADHVSKYHDRMPSDAYETVSAIVWPVRRFTNSYASASEVLRERFRQRSPDGKPAGSQHGKIPVPPRGY
Ga0187801_101920672	3300017933	Freshwater Sediment	MHTYDPRQQFIDGLERYVSGIETDGGLHRLAENVHAYHDPMPSEACDLVSTIVWPLRRFTNSYAGASEILLERFRAARESGKRAVK
Ga0187809_100822183	3300017937	Freshwater Sediment	MNQYDARQQFIDGLDRYLSGIEMDDRLQRLATNVSAYHDRMPSEACDMVSTIVWPIRRFTNSYAGASEVLLERFRMIGRDGGKPAGKRK
Ga0187809_102123952	3300017937	Freshwater Sediment	FIDGLERYVSGIETDGGLQRLAENVSKYHDRLPSEACDLVSAIVWPRRRFTNSYAGASEIVRERFRAIGREHGKPASEEQVTRRCAG
Ga0187809_103674612	3300017937	Freshwater Sediment	MNQYDARQQFIEGLERYVSGIENDDGLTRLADHVSKYHDRMPSDAYETVSAIVWPVRRFTNSYASASEVLRERFRQRSPDGKPAGSQHGKIPVPPRGY
Ga0187775_104241731	3300017939	Tropical Peatland	MHTYDARKLFIEGLDRYVSGIETDQGLERLAKNVSAYHDRLPSDACELVSAIVWPLRRFTTSYAGASEVLLERFRAIGGGSSEDAGKRH
Ga0187808_101263281	3300017942	Freshwater Sediment	MNQYDARQQFIEGLDRYLSGIETDDRLERLAKNVRSYHDPMPSEACDLVSTIVWPLRRFTNSYAGASEILLERFRAVRESGKSAVK
Ga0187819_101184622	3300017943	Freshwater Sediment	MNQYDARQQFIEGLERYVSGIENDDGLTRLADHVSKYHDRMPSDAYETVSAIVWPVRRFTNSYASASEVLRERFRQRSPDGKPAGSQHGKIPVPPRGH
Ga0187819_103630541	3300017943	Freshwater Sediment	MHTYDPRQQFIDGLERYVSGIETDGGLQRLAENVSKYHDRLPSEACDLVSAIVWPRRRFTNSYAGASEIVRERFRAIGREHGKPASEEQVTRRCAG
Ga0187819_103632451	3300017943	Freshwater Sediment	MHTYDPRQQFIDGLERYVSGIETDGGLQRLAEHVGKYHDRLPSEACDLVCAIAWPRRRFTNSYAGASQIVRERLKASVFPKKPT
Ga0187785_106578591	3300017947	Tropical Peatland	SIFNSTDGQVRRRTMNTYDPRRQFVEGLDRYVSGIETDDGLQKLAANVSACHDRLPADAIGLVSAIVWPLRRFTNSYAGASEVLRERFKGRATRDNAKRRA
Ga0187817_102422652	3300017955	Freshwater Sediment	MMHTYDPRQQFIDGLERYVSGIETDGGLHRLAENVHAYHDPMPSEACDLVSTIVWPLRRFTNSYAGASEILLERFRAAGESGKRAVK
Ga0187817_102494602	3300017955	Freshwater Sediment	MNQYDARQQFIEGLDRYLSGIETDDRLQRLATNVSAYHDRMPSEACDMVSTIVWPIRRFTNSYAGASEVLLERFRMIGRDGGKPAGMRK
Ga0187817_104546951	3300017955	Freshwater Sediment	LERYVSGIENDDGLTRLADHVSKYHDRMPSDAYETVSAIVWPVRRFTNSYASASEVLRERFRQRSPDGKPAGSQHGKIPVPPRGH
Ga0187817_111453282	3300017955	Freshwater Sediment	MHTYDPRQQFIDGLERYVSGIETDGGLQRLAENVSKYHDRLPSEACDLVSAIVWPRRRFTNSYAGASEIVRERFRAIGREHGRPAAKSK
Ga0187779_103959861	3300017959	Tropical Peatland	MQTYEPRQQFIDGLERYLSGIETDQGLERLAKNVSKYHDRMPEDAVDLVSAIVWPLRRFTNSYAGASEVLLERFRAIGKDKRAG
Ga0187779_104259241	3300017959	Tropical Peatland	RQQFIEGLDRYVSGIENDRGLERLAKNVSKYHDPMPEDAIDMVSSIVWPLRRFTNSYAGASEVLLERFRTIAKAK
Ga0187779_104639461	3300017959	Tropical Peatland	MNTYDARQQFIEGLDRYVSGIETDDGLQKLAANVSVYHDRLPPDAVGLVSAIVWPLRRFTNSYAGASEVLRESFKNRAARDR
Ga0187779_107351222	3300017959	Tropical Peatland	MHPYDARQQFIDGLERFASGIETERGLTRLAENVSAYHDPIPPDACDLVRMIVWPLRRFSNSYAGASEVLLESFRARPARVQS
Ga0187778_112679352	3300017961	Tropical Peatland	MHPYDARQQFIEGLDRYVSGIENDRGLERLAKNVSKYHDPMPEDAIDMVSTIVWPLKRFTNSYAGASEVLLERFRTIEREKGKLE
Ga0187778_113596321	3300017961	Tropical Peatland	MNQYDARQQFIEGLERYVSGIETDDGLTRLADHVSRYHDRMPSDAIGLVSAIVWPLRRFTNSYAGASEVLRERLRQRASSGKALSSPQPKIPVPPRGH
Ga0187776_100997584	3300017966	Tropical Peatland	MMRASNSSRGLDRYVAGIETDQGLERLAKNVSAYHDRLPSDACELVSAIVWPLRRFTTSYAGASEVLLERFRAIGRGSSEDAGKRH
Ga0187777_100771281	3300017974	Tropical Peatland	RGEAQMNQYDARQQFIEWLERYVSGIENDDGLTRLADHVSKYHDRMPSDAYEMVSAIVWPLRRFTNTYASASEVLQERFRQRSPAGKSAASR
Ga0187777_101165593	3300017974	Tropical Peatland	MHPYDARQQFIEGLDRYVSGIENDRGLERLAKNVSKYHDPMPEDAIDMVSSIVWPLRRFTNSYAGASEVLLERFRTIAKAK
Ga0187777_102016162	3300017974	Tropical Peatland	MQTYEPRQQFIDGLERYLSGIETDQGLERLAKNVSKYHDRMPEDAVDLVSAIVWPLRRFTNSYAGASEVLLERFRSRPEKRAT
Ga0187777_103008043	3300017974	Tropical Peatland	MHTYDARKLFIEGLDRYVAGIETDQGLERLAKNVSAYHDRLPSDACELVSAIVWPLRRFTTSYAGASEVLLERFRAIGRGSSEDAGKRH
Ga0187777_105021442	3300017974	Tropical Peatland	MHVYDARHQFIEGLDRYVSGIETDQGLERLAKNVSKYHDRMPEDAVDMVSAIVWPLRRFTNSYAGASEILLERFRALDGKKGNST
Ga0187816_104056531	3300017995	Freshwater Sediment	MMHTYDPRQQFIDGLERYVSGIETDGGLHRLAENVHAYHDPMPSEACDLVSTIVWPLRRFTNSYAGASEILLERFRAARESGKRAVK
Ga0187804_100422744	3300018006	Freshwater Sediment	MNQYDARQQFIDGLDRYLSGIETDDRLQRLATNVSAYHDRMPSEACDMVSAIVWPIRRFTNSYAGASEVLLERFRMIGRDGGKPAGKRK
Ga0187805_102673353	3300018007	Freshwater Sediment	MIASKEVPMNQYDARQQFIEGLDRYLSGIETDDRLQRLATNVSAYHDRMPSEACDMVSTIVWPIRRFTNSYAGASEVLLERFRMIGHDGGKPAGKRK
Ga0187773_110468211	3300018064	Tropical Peatland	MHTYDARQQFIEGLDRYVSGIETDKGLERLARNVSAYHDRLPTDACELVSAIVWPLRRFTNSYAGAAEVLRERLRARSKDDAKTTA
Ga0207699_108162931	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MNHYDPRQQFIEGLDRYVSGIETDDRLLRLATNVSAYHDRMPSEACDMVGAIVWPIRRFTNSYAGASEVLLQRLRAIASQRAD
Ga0209068_100739095	3300027894	Watersheds	MNQYDARQQFIEGLDRYISGIETDDRLQRLATNVSAYHDRMPSEACDLVSAIVWPMRRFTNSYAGASEVLLERFRMIGRDGGKPAANRK
Ga0209068_100829112	3300027894	Watersheds	MNHYDPRQQFIEDLDRYVSGIETDDRLLRLATNVSAYHDRMPSEACDMVGAIVWPVRRFTNSYAGASEVLLQRLRAIASQRADPAGKRK
Ga0209068_102367241	3300027894	Watersheds	RQQFIEGLDRYVSGIETDEGLARLAENVSANHDRMPFEACSLVCAIVWPRRRFTASYAGASEIVLERLRTIGREKGKPAGKWKVIST
Ga0209067_100785253	3300027898	Watersheds	MNRYGDRQQFIEGLERYVSGIESDQGLSRLAENVSQYHDRIPSDACGLVSLIVWPRRRFTASYAGASEIVLERLKANVLPAKLPAREISKYAAKRT
Ga0209067_102015881	3300027898	Watersheds	MHSYDARQQFIEGLELYVSGIETDEGLSRLAQNVSKYHDPIPSDACTLVGAIVRPRRRFTNSYAGAAEILLERFRARWRESGKHAAK
Ga0209067_102281664	3300027898	Watersheds	MNQYDARQQFIEGLDRYVSGIETDDRLQRLATNVSAYHDRMPSEACDLVSAIVWPMRRFTNSYAGASEVLLQRLRAVAPKSKPAGK
Ga0209067_102487602	3300027898	Watersheds	MHSYDPRQQFVDGLERYVSGIETDDGLHRLAEHVSKYHDRLPPEACELVSVIVWPRRRFTNSFAGASEIVRERLKASVFPKKPT
Ga0209067_102863631	3300027898	Watersheds	MNHYDARQQFVEGLDRYLSGIETEDGLSRLAANVSKYHDRLPADACELVSAIVWPLRRFTNSYAGASEVLRERLRQRASDAKPEGPQQQPPRGD
Ga0209583_100194104	3300027910	Watersheds	MNQYDARQQFIEGLDRYVSGIETDDRLQRLATNVSAYHDRMPSEACDLVSAIVWPMRRFTNSYAGASEVLLERFRMIGRDGGKPAANRK
Ga0209698_101846642	3300027911	Watersheds	MHSYDPRQQFIDGLERYVSGIETDDGLHRLAEHVSKYHDRLPSEACELVSAIVWPRRRFTNSFAGASEIVRERLKASVFPKKPT
Ga0209698_106787333	3300027911	Watersheds	MNQYDARQQFIEGLDRYVSGIETDDRLQRLATNVSAYHDRMPSEACDLVSAIVWPMRRFTNSYAGASEVLLQRLRAVAPKGDKSAM
Ga0209069_100079309	3300027915	Watersheds	MNHYDPRQQFIEDMDRYVSGIETDDRLLRLATNVSAYHDRMPSEACDMVGAIVWPVRRFTNSYAGASEVLLQRLRAIASQRADPAGKRK
Ga0209069_101647562	3300027915	Watersheds	MHTYDPRQQFVDGLERYVSGIETDDGLLRLAKNVSKYHDRLPSDACGLVSAIVYPRHRFTASYAGASEIVLERLKANAFPKRQ
Ga0311301_108859153	3300032160	Peatlands Soil	MHAYDAKQQFIDGLERYVSGIETDEGLVRLARNVSADHERMPYEACSLVCSIVWPRRRFTASYAGASEIVLERLRTIGQEKGKPGGKRR
Ga0335070_115239842	3300032829	Soil	MHTYDARKLFIEGLDRYVSGIETDQGLERLAKNVSAYHDRLPSDACELVSAIVWPLRRFTTSYAGASEVLLERFPAIGGGSSEDVGKRH
Ga0335081_101440005	3300032892	Soil	MNQYDARQQFIEGLDRYLSGIETDDRLERLAKNVRGYHDPMPSEACDLVSTIVWPLRRFTNSYAGASEILLERFRAARESGKSAVK
Ga0335081_113070062	3300032892	Soil	MHTYDARQQFIEGLDRYVSGIETDKGLERLARNVSAYHDRLPTDACELVSAIVWPLRRFTNSYAGAAEVLRERLRARSKDDAKATG
Ga0335069_104177793	3300032893	Soil	MHTYDARKLFIEGLDRYVSGIETDQGLERLAKNVSAYHDRLPSDACELVSAIVWPLRRFTTSYAGASEVLLERFRAFGRGSSEDAGKGH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F084745

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences