Metagenome / Metatranscriptome Family F084782

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084782
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	95 residues
Representative Sequence	MSVNHKLTHVVKDRVVQNFQLNGSELLISFVDGSTMTVTIAECNSPPLHEGAIIRQISEDQAKLLFECENDSTLDVTIVDPGNSVIVRDKNSQAEYLG
Number of Associated Samples	82
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	72.32 %
% of genes near scaffold ends (potentially truncated)	40.18 %
% of genes from short scaffolds (< 2000 bps)	92.86 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.893 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.571 % of family members)
Environment Ontology (ENVO)	Unclassified (30.357 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.464 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.56% β-sheet: 34.92% Coil/Unstructured: 59.52%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01007	IRK	9.82
PF00072	Response_reg	3.57
PF14082	DUF4263	1.79
PF00106	adh_short	0.89
PF03060	NMO	0.89
PF13414	TPR_11	0.89
PF01381	HTH_3	0.89
PF13561	adh_short_C2	0.89
PF00005	ABC_tran	0.89
PF10099	RskA	0.89
PF12802	MarR_2	0.89
PF02780	Transketolase_C	0.89
PF00355	Rieske	0.89
PF08299	Bac_DnaA_C	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.89
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	0.89
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.89 %
All Organisms	root	All Organisms	49.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.89 %
cellular organisms	root	All Organisms → cellular organisms	49.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.89 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.89 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	23.21 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.89 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	22.32 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.89 %
Methylacidiphilae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae	5.36 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.89 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.89 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.89 %
Methylacidiphilales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales	5.36 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.89 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	0.89 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.89 %
Methylacidiphilaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae	5.36 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.89 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.89 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.89 %
Methylacidiphilum	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Methylacidiphilum	5.36 %
unclassified Opitutaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae	0.89 %
unclassified Pseudomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas	0.89 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.89 %
Methylacidiphilum fumariolicum	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Methylacidiphilum → Methylacidiphilum fumariolicum	5.36 %
Pseudomonas sp. RIT-PI-q	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. RIT-PI-q	0.89 %
Opitutaceae bacterium TAV5	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TAV5	0.89 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100255242	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TAV5	1640	Open in IMG/M
3300002245\|JGIcombinedJ26739_101761984	Not Available	519	Open in IMG/M
3300003368\|JGI26340J50214_10189937	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	508	Open in IMG/M
3300004082\|Ga0062384_101177667	Not Available	556	Open in IMG/M
3300004152\|Ga0062386_101285147	Not Available	608	Open in IMG/M
3300004631\|Ga0058899_10026595	Not Available	609	Open in IMG/M
3300005436\|Ga0070713_101710812	Not Available	610	Open in IMG/M
3300005437\|Ga0070710_10722829	Not Available	705	Open in IMG/M
3300005439\|Ga0070711_100295607	Not Available	1286	Open in IMG/M
3300005439\|Ga0070711_100908977	Not Available	752	Open in IMG/M
3300005439\|Ga0070711_101292761	Not Available	633	Open in IMG/M
3300005546\|Ga0070696_101755820	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Methylacidiphilum → Methylacidiphilum fumariolicum	535	Open in IMG/M
3300005549\|Ga0070704_100715843	Not Available	889	Open in IMG/M
3300005994\|Ga0066789_10395922	Not Available	577	Open in IMG/M
3300006050\|Ga0075028_100609959	Not Available	649	Open in IMG/M
3300006163\|Ga0070715_10400120	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Methylacidiphilum → Methylacidiphilum fumariolicum	763	Open in IMG/M
3300006173\|Ga0070716_100984098	Not Available	666	Open in IMG/M
3300006175\|Ga0070712_100711806	Not Available	857	Open in IMG/M
3300006175\|Ga0070712_101257083	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Methylacidiphilum → Methylacidiphilum fumariolicum	645	Open in IMG/M
3300006175\|Ga0070712_101497728	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300006175\|Ga0070712_101987452	Not Available	509	Open in IMG/M
3300006176\|Ga0070765_100078485	All Organisms → cellular organisms → Bacteria	2792	Open in IMG/M
3300006893\|Ga0073928_10254486	Not Available	1341	Open in IMG/M
3300006893\|Ga0073928_10267847	All Organisms → cellular organisms → Bacteria	1298	Open in IMG/M
3300006893\|Ga0073928_10270015	All Organisms → cellular organisms → Bacteria	1292	Open in IMG/M
3300009101\|Ga0105247_10253044	Not Available	1205	Open in IMG/M
3300009545\|Ga0105237_10204605	Not Available	1974	Open in IMG/M
3300009553\|Ga0105249_12499728	Not Available	589	Open in IMG/M
3300010154\|Ga0127503_10351444	Not Available	784	Open in IMG/M
3300010154\|Ga0127503_10376177	Not Available	526	Open in IMG/M
3300010154\|Ga0127503_10892310	All Organisms → cellular organisms → Bacteria → Proteobacteria	1170	Open in IMG/M
3300010339\|Ga0074046_10937775	Not Available	501	Open in IMG/M
3300010373\|Ga0134128_10590991	Not Available	1236	Open in IMG/M
3300010373\|Ga0134128_11900700	Not Available	655	Open in IMG/M
3300010379\|Ga0136449_102569887	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	728	Open in IMG/M
3300010401\|Ga0134121_10490740	Not Available	1129	Open in IMG/M
3300012205\|Ga0137362_11604620	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300012361\|Ga0137360_11717555	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Methylacidiphilum → Methylacidiphilum fumariolicum	533	Open in IMG/M
3300012362\|Ga0137361_10886531	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	809	Open in IMG/M
3300012582\|Ga0137358_10150590	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1584	Open in IMG/M
3300012683\|Ga0137398_10206232	All Organisms → cellular organisms → Bacteria	1298	Open in IMG/M
3300012683\|Ga0137398_11178211	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	524	Open in IMG/M
3300012988\|Ga0164306_10199231	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300012989\|Ga0164305_10475120	Not Available	977	Open in IMG/M
3300013297\|Ga0157378_10031053	All Organisms → cellular organisms → Bacteria	4718	Open in IMG/M
3300014969\|Ga0157376_11082468	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300015242\|Ga0137412_10385394	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300019887\|Ga0193729_1257276	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300020579\|Ga0210407_10470046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. RIT-PI-q	983	Open in IMG/M
3300020580\|Ga0210403_10149331	All Organisms → cellular organisms → Bacteria	1911	Open in IMG/M
3300020581\|Ga0210399_10082075	Not Available	2621	Open in IMG/M
3300020582\|Ga0210395_10172502	Not Available	1619	Open in IMG/M
3300021088\|Ga0210404_10844016	Not Available	524	Open in IMG/M
3300021168\|Ga0210406_10229218	Not Available	1532	Open in IMG/M
3300021171\|Ga0210405_10066757	All Organisms → cellular organisms → Bacteria	2839	Open in IMG/M
3300021171\|Ga0210405_10691912	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300021171\|Ga0210405_10874907	Not Available	684	Open in IMG/M
3300021178\|Ga0210408_10060229	All Organisms → cellular organisms → Bacteria → PVC group	2965	Open in IMG/M
3300021178\|Ga0210408_10784316	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300021178\|Ga0210408_11114314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	607	Open in IMG/M
3300021181\|Ga0210388_11084279	Not Available	684	Open in IMG/M
3300021401\|Ga0210393_10396507	Not Available	1125	Open in IMG/M
3300021401\|Ga0210393_10427371	Not Available	1080	Open in IMG/M
3300021402\|Ga0210385_11498725	Not Available	515	Open in IMG/M
3300021403\|Ga0210397_10008494	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6209	Open in IMG/M
3300021405\|Ga0210387_10165786	All Organisms → cellular organisms → Bacteria	1901	Open in IMG/M
3300021405\|Ga0210387_10490507	Not Available	1092	Open in IMG/M
3300021405\|Ga0210387_11676894	Not Available	539	Open in IMG/M
3300021406\|Ga0210386_11093096	Not Available	677	Open in IMG/M
3300021407\|Ga0210383_11022406	Not Available	700	Open in IMG/M
3300021407\|Ga0210383_11428503	Not Available	575	Open in IMG/M
3300021420\|Ga0210394_10653704	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300021475\|Ga0210392_10251730	All Organisms → cellular organisms → Bacteria	1252	Open in IMG/M
3300021475\|Ga0210392_11094241	Not Available	597	Open in IMG/M
3300021477\|Ga0210398_10427798	Not Available	1079	Open in IMG/M
3300021477\|Ga0210398_11409400	Not Available	545	Open in IMG/M
3300021478\|Ga0210402_11760704	Not Available	546	Open in IMG/M
3300021478\|Ga0210402_11841168	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Methylacidiphilum → Methylacidiphilum fumariolicum	531	Open in IMG/M
3300021559\|Ga0210409_10515266	Not Available	1060	Open in IMG/M
3300022530\|Ga0242658_1190274	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Methylacidiphilae → Methylacidiphilales → Methylacidiphilaceae → Methylacidiphilum → Methylacidiphilum fumariolicum	553	Open in IMG/M
3300022557\|Ga0212123_10061483	All Organisms → cellular organisms → Bacteria	3319	Open in IMG/M
3300022557\|Ga0212123_10435268	Not Available	869	Open in IMG/M
3300024288\|Ga0179589_10254615	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300025898\|Ga0207692_10071626	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1828	Open in IMG/M
3300025898\|Ga0207692_10261056	Not Available	1041	Open in IMG/M
3300025898\|Ga0207692_10422900	Not Available	834	Open in IMG/M
3300025906\|Ga0207699_10093846	Not Available	1889	Open in IMG/M
3300025906\|Ga0207699_11025363	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300025910\|Ga0207684_10259374	All Organisms → cellular organisms → Bacteria	1500	Open in IMG/M
3300025914\|Ga0207671_10262952	Not Available	1358	Open in IMG/M
3300025915\|Ga0207693_11185605	Not Available	576	Open in IMG/M
3300027583\|Ga0209527_1041587	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300027603\|Ga0209331_1171243	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	507	Open in IMG/M
3300027645\|Ga0209117_1131335	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	664	Open in IMG/M
3300027812\|Ga0209656_10008324	All Organisms → cellular organisms → Bacteria	6610	Open in IMG/M
3300027825\|Ga0209039_10289835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	646	Open in IMG/M
3300027895\|Ga0209624_10306311	Not Available	1058	Open in IMG/M
3300028047\|Ga0209526_10187980	All Organisms → cellular organisms → Bacteria	1435	Open in IMG/M
3300028906\|Ga0308309_11692845	Not Available	537	Open in IMG/M
3300029943\|Ga0311340_11520384	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	523	Open in IMG/M
3300030618\|Ga0311354_10462686	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300031057\|Ga0170834_112351280	Not Available	558	Open in IMG/M
3300031231\|Ga0170824_106646199	Not Available	850	Open in IMG/M
3300031231\|Ga0170824_108035877	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1048	Open in IMG/M
3300031231\|Ga0170824_114381969	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	674	Open in IMG/M
3300031469\|Ga0170819_13961215	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	576	Open in IMG/M
3300031525\|Ga0302326_13023466	Not Available	573	Open in IMG/M
3300031708\|Ga0310686_117662347	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	656	Open in IMG/M
3300031754\|Ga0307475_10972286	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	668	Open in IMG/M
3300031962\|Ga0307479_11714058	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	582	Open in IMG/M
3300031962\|Ga0307479_11998451	Not Available	529	Open in IMG/M
3300032160\|Ga0311301_12675544	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	550	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.64%
Host-Associated	Host-Associated	5.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.14%
Aquatic	Environmental → Aquatic	12.50%
Plants	Host-Associated → Plants	5.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.46%
Freshwater	Environmental → Aquatic → Freshwater	7.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.36%
Thermal Springs	Environmental → Aquatic → Thermal Springs	4.46%
Peat	Environmental → Terrestrial → Peat	2.68%
Sediment	Environmental → Aquatic → Sediment	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.89%
Loam	Environmental → Terrestrial → Soil → Loam	26.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.36%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.46%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	4.46%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.68%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	17.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.36%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.46%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	4.46%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	17.86%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.14%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.14%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.46%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	4.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.57%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.68%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.68%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.79%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1002552424	3300002245	Forest Soil	MAVNHKLTKVVKDRVVQNFQLNASELLISFVDGSTITVTIVECNSPPLHEGARIRQISEDQAKLLFECEDDSTLDVTIIEPGNSVIVRDKNLGVEYLG*
JGIcombinedJ26739_1017619841	3300002245	Forest Soil	MPVNNKLTRAIKDRIVQNFQLNALEFLISFVDDSTRKVKIVESNSPPLREGGRIREISEDQAELLLECEDDSIFDVTIVDPGDSVIVRDKNGQVEFLG*
JGI26340J50214_101899372	3300003368	Bog Forest Soil	MSVNHKLTHVVKDRVVQNFQLNGSELLISFVDGSTMTVTIAECNSPPLHEGAIIRQISEDQAKLLFECENDSTLDVTIVDPGNSVIVRDKNSQAEYLG*
Ga0062384_1011776671	3300004082	Bog Forest Soil	MAVNNKLTHAIKDRVVQNFQMNASQLVISFIDGSTMAVTIAESNSPPLKEGAKIRQISEDQTKLLFECEDHSTLDVTIVDPGNSVILWDKNDLVEYLG*
Ga0062386_1012851471	3300004152	Bog Forest Soil	MAVNLRLTHAVKDRVVQNFQLIGSELLISFADGSTMTVTIAECNSPPLREGARIRQISEDGAKILFECEDDSTLDVMIVDPGNSVIIRDKNLGVEYLG*
Ga0058899_100265952	3300004631	Forest Soil	MSVNNKLTHAIKDRVVQNFQLNASELLISFVDGSTMTVTIAEWNSPPLKEGAKIRQISEDHAKLLFEWEDENTLDVTIVDPGTP*
Ga0070713_1017108121	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MVVNLKLTHAVKDRVVQNFQLNGSELLISFVDGSTMTVTIAECNSPPLHEGARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG*
Ga0070710_107228291	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSVNNKLTHAIKDRVVQNSQLNAPELLIRFVDGSTMAVTIVECNSPPLKEGARIRQISEDQAKLLFECADDSTLDVTIVDPGNSVIVRDKNGQVQYLG*
Ga0070711_1002956071	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MHPEGVSASERYWKMTMAVNLRLTHAVKDRVVQNFQLNGSELAISFVDGSTMTVTIAECNSPPIHEGARIRQISEDGAKLFFECEDDSTLDVTIAEPGNSVIVRDKNLGVEYLG*
Ga0070711_1009089772	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	SERDWRMNMVVNLKLTHAVKDRVVQNFQLNGSELLISFVDGSTMTVTIAECNSPPLHEGARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG*
Ga0070711_1012927611	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MVFASERFKRMTMAVNLRLTHAVKDRAVQNFKVHGPELRISFVDGSTMTVTIAECNGLPLREGARIRQISEDQTTLLFECEDESMLDVTIVDPGNCVIVRDKNNQVEYLG*
Ga0070696_1017558201	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MVVNLKLTHAVKDRVVQNFQLNGSELLISFVDGSTMTVTIAECNSPPLHEGARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDK
Ga0070704_1007158431	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MVVNLKLTHAVKDRVVQNFQLNGSELLISFVDGSTMTVIIAECNSPPLHEGARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG*
Ga0066789_103959222	3300005994	Soil	NMVVNLKLTHAVKDRVVQNYQLNGSELLISFVDSSTMTVTIAECNSPPLHEGARIRQISEDEKKLFFECEDESTLDVTIVDPGNSVIIRDNNNQVEYLG*
Ga0075028_1006099592	3300006050	Watersheds	MAVNLRLTHAVKDRVVQSFQLNGSELRIRFLDGSTLTVTIAECNGPPLHEGARIRQISEDETKLLFECEDDSTLDVTIVEPGNSVIVRDKNLGVEYLG*
Ga0070715_104001201	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VQNFQLNASILLINFVDGSKMTVTIAECNSPPLQEGARIRQISDDQTKLLFECEDDSTLDVTIVDPGNAVILRDKNSRVEYLG*
Ga0070716_1009840982	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MAVNLRLTHAVKDRVVQNFQLNGLELAISFVDGSTMTVTIAECNSPPIHEGARIRQISEDGAMLFFECEDDSTLDVTIAEPGNSVIVRDKNLGVEYLG*
Ga0070712_1007118061	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MAVNLRLTHAVKDRVVQNFQLNGSELAISFVDGSTMTVTIAECNSPPIHEGARIRQISEDGAKLFFECEDDSTLDVTIAEPGNSVIVRDKNLGVEYLG*
Ga0070712_1012570831	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MVVNLKLTHAIKDRVVQNFQLNASVLLINFVDGSTMAVTIAECNSPPLQEGASIRQISEDQAKLLFECEDDSTLDVTIVDPGDSVIVWDKNNLVEYLG*
Ga0070712_1014977281	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MAVNNKLTHVVKDRAVQKFQVNGSELLISFVDGSTMTVTIAECNSLPLREGARIRQISEDQTTLLFECEDESMLDVTIVDPGNCVIVRDKNNQVEYLG*
Ga0070712_1019874521	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MAVNLKLTRAIKDRIVQNFQLNGSVLLINFVDGSKMAVTIAECNSPPLHKGAKIRQVSEDQTKLLFECEDDSTLDVTIVDPGNSVIFRDKNNQIEYLG*
Ga0070765_1000784856	3300006176	Soil	MAVNHKLTNVVKDRVVQNFQLNASELLITFFDGSTMKVTIAECNSPPLREGARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDKNSQAEYLG*
Ga0073928_102544862	3300006893	Iron-Sulfur Acid Spring	MTVNRKLTHVVQDRVVQSCELKGSEVQIEFVDGSTMKVKIVESNSPPLHNGVRVRQISEDQAKLLLECQDDSTLDLTLVDPGNSVCIRDKNDRVEYLG*
Ga0073928_102678472	3300006893	Iron-Sulfur Acid Spring	MAVNHKLTNVVKDRVVEHFLLNGSELLISFVDGSTMTVTIAECNSPPLHERARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDRNSQVKYLG*
Ga0073928_102700152	3300006893	Iron-Sulfur Acid Spring	MTENHKLTHVVKDRIVQNFQLNASELLISFIDGSTMKVIIVESNSPPLREGARMRQISEDQAKLLFECEDGSTLDLTVVDPGNSVSVRDKNDHVEYLG*
Ga0105247_102530441	3300009101	Switchgrass Rhizosphere	MAVNLKLTRAIKDRIVQNFQLNGSVLLINFVDGSKMAVTIAECNSPPLHKGAKIRQVSEDQTKLLFECEDDSTLDVTIVDPGNSVIVRDENSRVEYLG*
Ga0105237_102046055	3300009545	Corn Rhizosphere	MNMVVNLKLTHAVKDRVVQNFQLNGSELLISFVDGSTMTVTIAECNSPPLHEGARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG*
Ga0105249_124997281	3300009553	Switchgrass Rhizosphere	MAVNLKLTRAIKDRIVQNFQLNGSVLLINFVDGSKMAVTIAECNSPPLHKGAKIRQVSEDQTKLLFECEDDSTLDVTIVDPGNSVIF
Ga0127503_103514442	3300010154	Soil	HKLTHAVKDRVVQSFQLNGAELLISFIDGSTMRVKIVESNSPPLREGTRIRQIFEDQAKLLIECEDDSTLDVTLVDPANSVSVRDKDNEVEYLG*
Ga0127503_103761772	3300010154	Soil	VNLRLTHAVEDRVVQNFQLVGSELLIGFVDGSTMTVTIAECNSLPLHEGARIRQISEDQTTLLFECEDDSTLDVTIVDPGNSVIVWDQNSQVEYLG*
Ga0127503_108923101	3300010154	Soil	MLTNVVKDRVVQRFQLNAPELLISFVDGSTMKVNIVESNSPPLREGARIRQISEDQAKLLFECEDDSTLDVTIVDPGSSVSIRNKNEVVPVSRIRRGSLF*
Ga0074046_109377752	3300010339	Bog Forest Soil	MAVNHKLTHVVKDRVVQDFQLNAPDLLITFVDGSTMNIKIVESNSPALREGTRIRQISEDRATIVVECEDDSAFDVTIVDPGSSVAVRDKNH
Ga0134128_105909913	3300010373	Terrestrial Soil	TLTHAVKDRVVPNFQRNGSELLISFVDGPTMTVTIAECNSPPLHEGARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG*
Ga0134128_119007002	3300010373	Terrestrial Soil	MMDMAVNQELTDIVKDRVIQSCQLNASELLISFVDGSTVKIKIVESNSPPLHQGARIRQISEDRVKLVIECEDESSIDVTLADPGASVAVRDK
Ga0136449_1025698871	3300010379	Peatlands Soil	MTMAVNLKLTRAIKERVVQSFQLNASELMVSFVDGSTMTVKIAESNSPPLREGARIRQISKDQTTLVIECEDDSTLDVTIGDPGNSVMVRDKNSQVEY
Ga0134121_104907403	3300010401	Terrestrial Soil	MNMVVNLKLTHAVKDRLVQNFQLNGSELLISFVDDSTMTVTIAECNSPPLHEGARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG*
Ga0137362_116046202	3300012205	Vadose Zone Soil	MPVNNKLTRAIKDRVVQNFQLNASIPLINFHDGSKLTVTIAECNSPPLQEGARIRQISADRAKLLFECEDDSTPDVTIVEP*
Ga0137360_117175551	3300012361	Vadose Zone Soil	MIMAVNLKLTHAAKDRVVESFQLNASELMINFVDGSTMTIKIAECNSLPLHEGARIRQISEDQTTLLFECEDESILDVTIVDPGNSVIVRDKNNQVEYLG*
Ga0137361_108865312	3300012362	Vadose Zone Soil	MPVNHKLTGIVKNRVVQSLQLNASELLISFVDGSTMTVKIAESNSPPLREGARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVSVLDQNHHVEYLG*
Ga0137358_101505903	3300012582	Vadose Zone Soil	MSVNDKLTHAIKDRVVQNFQLNASELLMSFVDGLTLTVTIVESNSPPVKEGARIRQISEDQARLLFECEDDSTLDVTIVDPGNAVILRDKNSRVEYLG*
Ga0137398_102062322	3300012683	Vadose Zone Soil	MTVSENLKLTRATKDRVVQSLQLYASEILISFVDGSTMPVTIAECNSPPLQEGARIRQISEDGAKLLFECEDDSTLDVTIV
Ga0137398_111782112	3300012683	Vadose Zone Soil	MTMAVNLKLTHAVKDRVVQNFQLNGSELLISFVDGSTMTVTIAECNSPPLHEGARIRQISGDEAKLLFECEDESTLDVTIVYPG
Ga0164306_101992313	3300012988	Soil	MAVNNKLTHAIKDRAVQKFQVNGSELLISFVDGSTMTVTIAESNSPPLHEGARIRQISEDGTKLLFECEDDSTLDVTIVEPGNSVILRDKNLGVEYLG*
Ga0164305_104751201	3300012989	Soil	MAVNLRLTHAVKDRVVQNFQLNGSELAISFVDGSTMTVTIAECNSPPIHEGARIRQISEDGAMLFFECEDDSTLDVTNVERGKSVIVRDKNNQVEYLG*
Ga0157378_100310531	3300013297	Miscanthus Rhizosphere	KRGSPERVSASERDWRMNMVVNLKLNHEVKDRLGQNFKLNGSELLISFVDGSTMTVTIAECNSPPLHEGARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG*
Ga0157376_110824682	3300014969	Miscanthus Rhizosphere	MNLRLTHAVKDRVVQSFQLNGSELVISFADGSTMTVTIAECNSPPLQEGARIRQISEDQTKLLFECEDDSTLDLTIVDPGNSVILRDKNSRVEYLG*
Ga0137412_103853943	3300015242	Vadose Zone Soil	MAVNNKLTHAIKDRVVQSFQLDASELLISFVDGSTMTIKIAECNSLPLHEWCQNPADFGGSAKVLFECDDNSTLDLTIVEPGNSVIIRDKNNQAEYFG*
Ga0193729_12572761	3300019887	Soil	MTVSENLKLTHAVKDRVVQNFQLNGSELLISFVDGSTMTVTIAECNSPPLHEGARIRQISGDEAKLLFECEDESTLDVTIVDPGNSVIVRHKDSQVEYL
Ga0210407_104700461	3300020579	Soil	MVFASERFKRMTMAVNLRLTHAVKDRAVQNFKVHGPELRISFVDGSTMTVTIAECNGLPLREGARIRQISEDQTTLLFECEDESMLDVTIVDPGNCVIVRDKNNQVEYLG
Ga0210403_101493311	3300020580	Soil	MAVNHKLTNVVKDRVVQNFQLNASELLITFFDGSTMKVTIAECNSPPLREGARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDKNSQAEYLG
Ga0210399_100820751	3300020581	Soil	MAVNHKLTNVVKDRVVQNFQLNASELLITFFDGSTMKVTIAECNSPPLREGARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDKNSQVKYLG
Ga0210395_101725024	3300020582	Soil	MIMAVNHKLTNVVKDRVVQNFQLNASELLITFFDGSTMKVTIAECNSPPLREGARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDKNSQAEYLG
Ga0210404_108440162	3300021088	Soil	MAVNHKLNRILKDRVVQTFQLNASELLISFLDGSTMKVKIVESNSPPLREGVRIRQISEDRAKLVIECEDDSTLDVTVVD
Ga0210406_102292184	3300021168	Soil	MAVNLRLTHAVKDRAVQNFKVHGPELRISFVDGSTMTVTIAECNGLPLREGARIRQISEDQTTLLFECEDESMLDVTIVDPGNCVIVRDKNNQVEYLG
Ga0210405_100667574	3300021171	Soil	MPVNNKLTRAIKDRIVQNFQLNALEFLISFVDDSTRKVKIVESNSPPLREGGRIREISEDQAELLLECEDDSIFDVTIVDPGDSVIVRDKNGQVEFLG
Ga0210405_106919122	3300021171	Soil	MVVNLKLTHVIKDRVVQNFQLNASVLLINFVDGSMMTVTIAECNSPPLQEGARIRQISDDQTKLLFECEDDSTLDVTIVDPGNAVILRDKNSRVEYLG
Ga0210405_108749071	3300021171	Soil	MSVNHKLTHAIKDRVIQSFQLNASELLISFVDGSTMTVTIAECNSPPLREGARIRQISEDQAKLLFECEDNSTLDVTIVDPGNSVIVRD
Ga0210408_100602297	3300021178	Soil	NHKLTNVVKDRVVQNFQLNASELLITFFDGSTMKVTIAECNSPPLREGARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDKNSQAEYLG
Ga0210408_107843162	3300021178	Soil	MAVNHKLTHVVKDRVVQNFQLNASELLISFADGSTMKVKIVESNSPPLREGARIRQISEDQAKLFIECEDDSTIDVTLANPGSSVAVRDKTYQ
Ga0210408_111143142	3300021178	Soil	MAVNNKLTHAIKDRVVQNFQLNASVLLINFVDGWKMTVTIAECNSPPLHEGARIRQVSENQTKLLFECEDDSTLDVTIVDPGNAVILRDKNSRVEYLG
Ga0210388_110842791	3300021181	Soil	AVKDRAVQNFKVSASELLISFFDGSTMTVTIAECNSLPLHEGARIRQISEDQTTLLFECEDGSILDVTIVDPGNSVIVRDKNNQVEYLG
Ga0210393_103965072	3300021401	Soil	MAVNLRLTHVVKDRAVQNFQVRGPELLISFFDGSTMTVTIAECNSLPFHEGARIPQISEDGAKLLFECEHDSTLDVTTVDSGELGDVRDKNNLVDYLV
Ga0210393_104273711	3300021401	Soil	MAVNLRLTHAIKDRAVQGFQLNASELLISFFDDSTMTVKIAECNSLPLHEGARIRQISEDQAKLLVECKDDSTLDVTIVDPGNSVIVRDKNGQVEYLG
Ga0210385_114987251	3300021402	Soil	LTHVVKDRAVQNFQVRGPELLISFFDGSTMTVTIAECNSLPFHEGARIPQISEDGAKLLFECEHDSTLDVTTVDSGELGDVRDKNNLVDYLV
Ga0210397_100084949	3300021403	Soil	QGFQLNASELLISFVDGSTMTVKIAECNSLPLHAGARIRQISEDQAKLLFECEDESTLDVTIVDPGNSVMVREKNGQVEYLG
Ga0210387_101657862	3300021405	Soil	MAVNQKLTRVVRDRVVQSFQLDAAELMVVFVDGSTMTIKIVESNSPPLREGARIREISEDRVKLVIECDDESTLDLTIVEPGNSVGVRDKNNQIEYLG
Ga0210387_104905072	3300021405	Soil	MAVNLRLTHAVKDRAVQSFRLNGSELAISFVDGSTMTVTIAESNSPPLREGAKIRQISEDGAKLLFECEDNSTLDVTIVDPGNSVIVRDKNLGVEYLG
Ga0210387_116768942	3300021405	Soil	MSVNNKLTHAIKDRVVQSFQMNASQLVISFVDGSMMAVTIAECNSPPLQEGARIRQISEDQTKLLFECEDDSTLDVTIVDPGNSVIVWDKNNRVEYLG
Ga0210386_110930962	3300021406	Soil	MAVNLRLTHAIKDRAVQGFQLNASELLISFLDDSTMTVKIAECNSLPLHEGARIRQISEDQAKLLVECEDDSTLDVTIVDPGNSVIVRDKNGQ
Ga0210383_110224062	3300021407	Soil	MAVNLRLSHAVKNRVVQNFKVNASELLIGFCDGSTMMVTIAECNSLPLHEGARIRQVSEDQTTLLFECEDESILDVTIVDPGNSVI
Ga0210383_114285032	3300021407	Soil	FKLNASELLISFFDGSTMTVTIAECNSLPLHEGARIRQISEDQTTLLFECEDGSILDVTIVDPGNSVIVRDKNNQVEYLG
Ga0210394_106537041	3300021420	Soil	MPVNNKLTRAIKDRIVQNFQLNALEFLISFVDDSTRKVKIVESNSPPLREGGRIREISEDQAELLLECEDDSIFDVTIVDPGDSVIVRDK
Ga0210392_102517301	3300021475	Soil	MAVNLRLTHAVKDRAVQNFKVNASELLISFFDGSTMTVTIAECNSLPLHEGARIRQISEDQTTLLFECEDGSILDVTIVDPGNSVIVRDKNNQVEYLG
Ga0210392_110942411	3300021475	Soil	MAVNLRLTHAVKDRVVQNFQVNASELLISFFDGSTPTVTIAECNSLPLQEGARIRQISGDGEMGRWEDGAKLLFECEDDSTLEVTIVNPGNSVIVWDKNNQVEYPG
Ga0210398_104277981	3300021477	Soil	NFKVNASELLIGFCDGSTMMVTIAECNSLPLHEGARIRQVSEDQTTLLFECEDESILDVTIVDPGNSVIVRDKNNQVEYLG
Ga0210398_114094001	3300021477	Soil	VKDRAVQNFKVNASELLISFFDGSTMTVTIAECNSLPLHEGARIRQISEDQAKLLFECEDESTLDVTIVDRGNSVIVRDKNGQVEYLG
Ga0210402_117607042	3300021478	Soil	MAVNLRLTHAVKDRVVQNCQVNGSELLISFFDGSTMTITIAECNSLPLQEGTRIRQISEDQTTLLFECEDESVLDVTIVDPGNSVI
Ga0210402_118411681	3300021478	Soil	VKDRVVQNFQLNASELLIRFVDGSTMTVTIAECNSLPLHEGARIRQISEDQTTLLFECEDGSILDVTIVDPGNSVIVRDKNNQVEYLG
Ga0210409_105152661	3300021559	Soil	MAVNHKLTNVVKDRVVQNFQLNASELLITFFDGSTMKVTIAECNSPPLREGARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRD
Ga0242658_11902741	3300022530	Soil	MAVNLRLTHAVKDRAVQNFKVNASELLISFFDGSTITVTIAECNSLPLHEGARIRQISEDQTTLLFECEDGSILDVTIVDPGNSVIVRDKNNQVEYLG
Ga0212123_100614832	3300022557	Iron-Sulfur Acid Spring	MAVNHKLTNVVKDRVVEHFLLNGSELLISFVDGSTMTVTIAECNSPPLHERARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIVRDKNSQAEYLG
Ga0212123_104352682	3300022557	Iron-Sulfur Acid Spring	RFQLNAPELLISFVDGSTMKVNIVESNSPPLREGARMRQISEDQAKLLFECEDGSTLDLTVVDPGNSVSVRDKNDHVEYLG
Ga0179589_102546152	3300024288	Vadose Zone Soil	MAVNNKLTHAIKDRAVQNFQVNGPELLISFVDGSTMTVTIAECNSPPLHEGARIRQISEDEAMILFEFEDERTLDVTIADPGNSVIVRDKNGQVEYFG
Ga0207692_100716263	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	LGMCQRTGQENEYGRESQTAHAIKDRVVQNFQLNASELLIRFADGSTMTVTIVECNSPPLKEGARIRQISEDQAKLLFECADDSTLDVTIVDPGNSVIVRDKNGQVQYLG
Ga0207692_102610561	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MAVNQKLTHIVKDRVVQNFQLNGTELLISFVDGSTMKVKIVESNSLPLREGAKLRQIFEDQAKLLIECEDDSTLDVTLVDPGNSISVRDKE
Ga0207692_104229002	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	QNFQLNASVLLINFVDGSTMAVTIAECNSPPLQEGASIRQISEDQAKLLFECEDDSTLDVTIVDPGDSVIVWDKNNRVE
Ga0207699_100938462	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MAVNLKLTRAIKDRVVQNFQLNASVLLINFVDGSMMAVTIAECNSPPLQEGARIRQISEDQTKLLFECEDHSTLDVTIVDPGNSVIVRDENSRVEYLG
Ga0207699_110253631	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MNLRLTHAVKDRVVQSFQLNGSELVISFADGSTMTVTIAECNSPPLHEGVRIRQISEDGAKLLFECEDDSTLDVTIVEPGNSVIVRDKNLGVEYLG
Ga0207684_102593741	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MAVNRKLTHVVKDRVVQSFQLNASELLIGFVDGSSMKVKIVESNSPPLREGARIRQISETLAKLVIECGDDSAIDVTLANPGSSV
Ga0207671_102629523	3300025914	Corn Rhizosphere	MVVNLKLTHAVKDRVVQNFQLNGSELLISFVDGSTMTVTIAECNSPPLHEGARIRQISEDETKLFFECEDESTLDVTIVDPGNSVIIRDKGDGVEYLG
Ga0207693_111856051	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MHPEGVSASERYWKMTMAVNLRLTHAVKDRVVQNFQLNGSELAISFVDGSTMTVTIAECNSPPIHEGARIRQISEDGAKLFFECEDDSTLDVTIAEPGNSVIVRDKNLGVEYLG
Ga0209527_10415871	3300027583	Forest Soil	MSENNKLTDAIKDRIIQNFQLNASELLISFVDASTMTVTIAECNSPRLHEGARIRQISEDKAKILIECEDDSTLDVTIVDPGNSVSVRDKNDVVEYLG
Ga0209331_11712432	3300027603	Forest Soil	MAVNHKLTHVVKDRVVQNFQLNASELLISFVDGSTMTVTIAECNSPPLHEGARIRRVSEDQAKLLFECEDDSMRDVTIVDPGNSVIVRDKN
Ga0209117_11313352	3300027645	Forest Soil	MSLNHKLTNVVKDRVVQNFQLNASKLLISFVDGSTMTVTIAECNSPPLHEGARIRRVSEDQAKLLFECEDDSTLDVTIVDPGNSVSVRDKNDVVEYLG
Ga0209656_100083244	3300027812	Bog Forest Soil	MSVNHKLTHVVKDRVVQNFQLNGSELLISFVDGSTMTVTIAECNSPPLHEGAIIRQISEDQAKLLFECENDSTLDVTIVDPGNSVIVRDKNSQAEYLG
Ga0209039_102898351	3300027825	Bog Forest Soil	MSVNHKLTHVVKDRVVQNFQLNGSELLISFVDGSTMTVTIAECNSPPLHEGAIIRQISEDQAKLVIECEDNSSIDLTLADPGAS
Ga0209624_103063112	3300027895	Forest Soil	MAVNLRLTHAVKDRAVQNFKLNASELLISFFDGSTMTVTIAECNSLPLHEGARIRQISEDQTTLLFECEDGSILDVTIVDPGNSVIVRDKNDQVEYLG
Ga0209526_101879802	3300028047	Forest Soil	MIMAVNHKLTKVVKDRVVQNFQLNASELLISFVDGSTITVTIVECNSPPLHEGARIRQISEDQAKLLFECEDDSTLDVTIIEPGNSVIVRDKNLGVEYLG
Ga0308309_116928451	3300028906	Soil	MVVNNKLTHAIKDRVVQNFQLNASVLLINFVDGSKMTVTIAECNSPPLHGGARIRQISEDQTKLIFECEDDSTLDVTIVDP
Ga0311340_115203841	3300029943	Palsa	MAVNLKLTHAVKDRVVQSFQLNGPELIISFVDGSTLTVKIVECNSPPLHEGVRIRQISEDQVELLFECEDDSTLDVTIIDPGNSVI
Ga0311354_104626863	3300030618	Palsa	MAVNLKLTHAVKDRVVQSFQLNGPELIISFVDGSTLTVKIVECNSPPLHEGVRIRQISEDQVELLFECEDDSTLDVTIIDPGNS
Ga0170834_1123512802	3300031057	Forest Soil	MAVNLRLTHVVKDRAVQNFQAKGSELLISFVDGSSMTVTIAECNSLPLHEGARIRQISEDQTKLLFECEDESILDVTISIRGTL
Ga0170824_1066461992	3300031231	Forest Soil	MAVNLRLTHAVKDRAVQNFKVNGSELLISFFDGSTMTVTIAECNSLPLHEGARIRQISEDQTTLLFECEDGSILDVTIVDPGNSVIVRDKNNQVEYLG
Ga0170824_1080358772	3300031231	Forest Soil	MAVNHMLTNVVKDRVVQRFQLNAPELLISFVDGSTMKVNIVESNSPPLREGARIRQISEDQAKLLFECEDDSTLDVTIVDPGSSVSIRNKNDVVEYLG
Ga0170824_1143819692	3300031231	Forest Soil	MAVNLKLTHAIKDRAVQGFQLNASELLISFFDGSTLTVKIAECNSLPLHEGARIRQISEDQTTLLFECEDESVLDVTIVDPGNSVIVRDKNNQVEYLV
Ga0170819_139612152	3300031469	Forest Soil	MAVNLRLTHAVKDRVVQSFQLNASELLITFVDGSTMAVKILESNSPPLHEGARIRQISEDGAKLLFECEDDSTLDVTIVEPGNSVIVRDKNLGVEYLG
Ga0302326_130234662	3300031525	Palsa	MIMTPNLKLTHAVKDRVVQSFNLNGSELLISFVDGSTMTVSIIESNSPPLRKGARMRQIFEDETKLLFECEDDSTLDVTIVDPGNSVIVRD
Ga0310686_1176623472	3300031708	Soil	MAVNLKLTHAIKDRVVQSFQPNASGLLISFVDGSTMKVNIVESNSPPLHEGSRIRQISEDQTKLLFECEDDSTLAVTIVDPGNSVIVGTRTVRSSISDKLRSHL
Ga0307475_109722862	3300031754	Hardwood Forest Soil	MSVNHKLTHVVKDRAVQNFQLNASELLISFVDGSTMTVTIAECNSPPLHEGARIRQISEDQAKLLFECEDDSTLDVTIVDPGNSVIIRDK
Ga0307479_117140581	3300031962	Hardwood Forest Soil	MDVNHKLTNVVKDRVVQKFQLNASELLIGFVDGSTMTVTIAKCNSPPLHEGARIRQISEDQAKVLSGCEDDSTLDVTIVDPGNS
Ga0307479_119984511	3300031962	Hardwood Forest Soil	MAVNHKLTNLVKDRVVQNFQLNAPELLITFVDGSTMKVNIVESNSPPLREGARIRHVSEDRAKLLFECEDNSVFDVTIVEQGNSVSVRD
Ga0311301_126755442	3300032160	Peatlands Soil	MAVNLKLTRAIKERVVQSFQLNASELMVSFVDGSTMTVKIAESNSPPLREGARIRQISKDQTTLVIECEDDSTLDVTIGDPGNSVMVRDKNS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084782

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences