Metagenome / Metatranscriptome Family F084859

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084859
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	52 residues
Representative Sequence	MNRKLHFQGALLLAGMAAALTPMAARSAPPEPSAVTVTVTAVGKKDAASRAV
Number of Associated Samples	92
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.21 %
% of genes near scaffold ends (potentially truncated)	92.86 %
% of genes from short scaffolds (< 2000 bps)	91.96 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.750 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.786 % of family members)
Environment Ontology (ENVO)	Unclassified (38.393 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.857 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 30.77% β-sheet: 9.62% Coil/Unstructured: 59.62%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF13473	Cupredoxin_1	4.46
PF05368	NmrA	2.68
PF03692	CxxCxxCC	2.68
PF01433	Peptidase_M1	2.68
PF00400	WD40	1.79
PF13360	PQQ_2	1.79
PF04679	DNA_ligase_A_C	1.79
PF01834	XRCC1_N	1.79
PF00072	Response_reg	0.89
PF13637	Ank_4	0.89
PF00581	Rhodanese	0.89
PF03551	PadR	0.89
PF12680	SnoaL_2	0.89
PF13776	DUF4172	0.89
PF06912	DUF1275	0.89
PF01011	PQQ	0.89
PF07676	PD40	0.89
PF00069	Pkinase	0.89
PF00116	COX2	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.57
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	2.68
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.79
COG1622	Heme/copper-type cytochrome/quinol oxidase, subunit 2	Energy production and conversion [C]	0.89
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.89
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.89
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.89
COG3619	Uncharacterized membrane protein YoaK, UPF0700 family	Function unknown [S]	0.89
COG4263	Nitrous oxide reductase	Inorganic ion transport and metabolism [P]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.75 %
Unclassified	root	N/A	31.25 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.75 %
Unclassified	root	N/A	31.25 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.75 %
Unclassified	root	N/A	31.25 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	47.32 %
Unclassified	root	N/A	31.25 %
Calditrichaeota	phylum	All Organisms → cellular organisms → Bacteria → Calditrichaeota	0.89 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.25 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	10.71 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	8.04 %
Calditrichia	class	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia	0.89 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.71 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	7.14 %
Calditrichales	order	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales	0.89 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.89 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.71 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7.14 %
unclassified Calditrichales	no rank	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → unclassified Calditrichales	0.89 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.89 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.71 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4.46 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.89 %
Calditrichales bacterium	species	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → unclassified Calditrichales → Calditrichales bacterium	0.89 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.89 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.71 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4.46 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.89 %
Micrococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Micrococcus	0.89 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.89 %
Calditrichales bacterium	species	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → unclassified Calditrichales → Calditrichales bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.25 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.71 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4.46 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.89 %
Micrococcus luteus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Micrococcus → Micrococcus luteus	0.89 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	0.89 %
Calditrichales bacterium	species	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → unclassified Calditrichales → Calditrichales bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_100048892	Not Available	535	Open in IMG/M
3300000955\|JGI1027J12803_100338166	All Organisms → cellular organisms → Bacteria → Acidobacteria	1157	Open in IMG/M
3300000955\|JGI1027J12803_102735136	Not Available	793	Open in IMG/M
3300001431\|F14TB_104647629	Not Available	521	Open in IMG/M
3300004267\|Ga0066396_10017617	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	933	Open in IMG/M
3300004633\|Ga0066395_11013791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Micrococcus → Micrococcus luteus	507	Open in IMG/M
3300005332\|Ga0066388_103114253	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	847	Open in IMG/M
3300005439\|Ga0070711_101280561	Not Available	636	Open in IMG/M
3300005445\|Ga0070708_100779976	Not Available	899	Open in IMG/M
3300005467\|Ga0070706_100447228	Not Available	1202	Open in IMG/M
3300005518\|Ga0070699_100456689	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300005536\|Ga0070697_101352857	Not Available	635	Open in IMG/M
3300005556\|Ga0066707_10609665	All Organisms → cellular organisms → Bacteria → Acidobacteria	696	Open in IMG/M
3300005764\|Ga0066903_105432474	Not Available	672	Open in IMG/M
3300007258\|Ga0099793_10504187	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300007788\|Ga0099795_10343280	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	666	Open in IMG/M
3300007788\|Ga0099795_10517728	Not Available	558	Open in IMG/M
3300009038\|Ga0099829_10422973	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300010366\|Ga0126379_11781345	All Organisms → cellular organisms → Bacteria → Acidobacteria	720	Open in IMG/M
3300010398\|Ga0126383_12586737	All Organisms → cellular organisms → Bacteria → Acidobacteria	591	Open in IMG/M
3300012198\|Ga0137364_10963629	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300012200\|Ga0137382_10587922	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300012201\|Ga0137365_10728808	All Organisms → cellular organisms → Bacteria → Acidobacteria	724	Open in IMG/M
3300012203\|Ga0137399_10009615	All Organisms → cellular organisms → Bacteria → Acidobacteria	5724	Open in IMG/M
3300012203\|Ga0137399_10945951	All Organisms → cellular organisms → Bacteria → Acidobacteria	725	Open in IMG/M
3300012205\|Ga0137362_10926587	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300012208\|Ga0137376_11469053	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300012209\|Ga0137379_10063826	All Organisms → cellular organisms → Bacteria → Acidobacteria	3546	Open in IMG/M
3300012285\|Ga0137370_10491827	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300012361\|Ga0137360_10836197	All Organisms → cellular organisms → Bacteria → Acidobacteria	793	Open in IMG/M
3300012582\|Ga0137358_10890015	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300012685\|Ga0137397_10060494	All Organisms → cellular organisms → Bacteria	2732	Open in IMG/M
3300012918\|Ga0137396_10891526	Not Available	652	Open in IMG/M
3300012922\|Ga0137394_10960705	Not Available	711	Open in IMG/M
3300012929\|Ga0137404_10579776	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1007	Open in IMG/M
3300012989\|Ga0164305_11117164	Not Available	678	Open in IMG/M
3300014166\|Ga0134079_10145549	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300015054\|Ga0137420_1404978	All Organisms → cellular organisms → Bacteria	1878	Open in IMG/M
3300015245\|Ga0137409_10552854	All Organisms → cellular organisms → Bacteria → Acidobacteria	978	Open in IMG/M
3300015264\|Ga0137403_11285926	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300016270\|Ga0182036_10425747	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300016270\|Ga0182036_10616501	Not Available	871	Open in IMG/M
3300016270\|Ga0182036_11769663	Not Available	523	Open in IMG/M
3300016294\|Ga0182041_10714138	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	890	Open in IMG/M
3300016294\|Ga0182041_12253386	Not Available	509	Open in IMG/M
3300016341\|Ga0182035_11232739	Not Available	669	Open in IMG/M
3300016357\|Ga0182032_10625098	All Organisms → cellular organisms → Bacteria → Acidobacteria	898	Open in IMG/M
3300016357\|Ga0182032_10670421	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	868	Open in IMG/M
3300016371\|Ga0182034_10161353	All Organisms → cellular organisms → Bacteria → Acidobacteria	1696	Open in IMG/M
3300016371\|Ga0182034_11462356	Not Available	598	Open in IMG/M
3300016387\|Ga0182040_11021153	Not Available	690	Open in IMG/M
3300016422\|Ga0182039_10465739	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1085	Open in IMG/M
3300016422\|Ga0182039_11698274	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300020140\|Ga0179590_1102617	Not Available	771	Open in IMG/M
3300020199\|Ga0179592_10264496	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300021088\|Ga0210404_10719274	All Organisms → cellular organisms → Bacteria → Acidobacteria	569	Open in IMG/M
3300021402\|Ga0210385_11537328	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300021560\|Ga0126371_12991086	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300024347\|Ga0179591_1050460	All Organisms → cellular organisms → Bacteria	3477	Open in IMG/M
3300024347\|Ga0179591_1100099	All Organisms → cellular organisms → Bacteria → Acidobacteria	3669	Open in IMG/M
3300026304\|Ga0209240_1221948	Not Available	573	Open in IMG/M
3300026469\|Ga0257169_1059974	Not Available	607	Open in IMG/M
3300026489\|Ga0257160_1038463	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	807	Open in IMG/M
3300026489\|Ga0257160_1072921	All Organisms → cellular organisms → Bacteria → Acidobacteria	608	Open in IMG/M
3300026490\|Ga0257153_1022028	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1306	Open in IMG/M
3300026555\|Ga0179593_1060476	All Organisms → cellular organisms → Bacteria	5868	Open in IMG/M
3300026557\|Ga0179587_10152528	All Organisms → cellular organisms → Bacteria	1440	Open in IMG/M
3300026824\|Ga0207723_103331	All Organisms → cellular organisms → Bacteria	1385	Open in IMG/M
3300026847\|Ga0207802_1003376	All Organisms → cellular organisms → Bacteria → Calditrichaeota → Calditrichia → Calditrichales → unclassified Calditrichales → Calditrichales bacterium	1482	Open in IMG/M
3300026847\|Ga0207802_1022326	All Organisms → cellular organisms → Bacteria → Acidobacteria	545	Open in IMG/M
3300026928\|Ga0207779_1009943	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300026934\|Ga0207816_1039584	Not Available	556	Open in IMG/M
3300026945\|Ga0207743_1020429	Not Available	678	Open in IMG/M
3300027064\|Ga0208724_1026357	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300028536\|Ga0137415_10622360	Not Available	891	Open in IMG/M
3300028536\|Ga0137415_10959111	Not Available	666	Open in IMG/M
3300030981\|Ga0102770_10554613	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300031057\|Ga0170834_100609084	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	649	Open in IMG/M
3300031474\|Ga0170818_102732712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	704	Open in IMG/M
3300031545\|Ga0318541_10267385	All Organisms → cellular organisms → Bacteria → Acidobacteria	951	Open in IMG/M
3300031546\|Ga0318538_10104390	All Organisms → cellular organisms → Bacteria → Acidobacteria	1466	Open in IMG/M
3300031573\|Ga0310915_10231674	All Organisms → cellular organisms → Bacteria → Acidobacteria	1297	Open in IMG/M
3300031679\|Ga0318561_10789241	Not Available	522	Open in IMG/M
3300031720\|Ga0307469_12016522	Not Available	560	Open in IMG/M
3300031736\|Ga0318501_10081306	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	1584	Open in IMG/M
3300031820\|Ga0307473_11114883	Not Available	582	Open in IMG/M
3300031833\|Ga0310917_11029238	Not Available	551	Open in IMG/M
3300031845\|Ga0318511_10434315	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	604	Open in IMG/M
3300031879\|Ga0306919_10249352	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300031890\|Ga0306925_12125826	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300031912\|Ga0306921_10132106	All Organisms → cellular organisms → Bacteria → Acidobacteria	2914	Open in IMG/M
3300031912\|Ga0306921_11466026	All Organisms → cellular organisms → Bacteria → Acidobacteria	747	Open in IMG/M
3300031941\|Ga0310912_10039965	All Organisms → cellular organisms → Bacteria → Acidobacteria	3248	Open in IMG/M
3300031941\|Ga0310912_10530375	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	917	Open in IMG/M
3300031941\|Ga0310912_10676051	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	801	Open in IMG/M
3300031942\|Ga0310916_10989045	All Organisms → cellular organisms → Bacteria → Acidobacteria	702	Open in IMG/M
3300031946\|Ga0310910_10102047	All Organisms → cellular organisms → Bacteria → Acidobacteria	2131	Open in IMG/M
3300031946\|Ga0310910_10299459	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1265	Open in IMG/M
3300031947\|Ga0310909_10493454	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300031954\|Ga0306926_10731390	Not Available	1198	Open in IMG/M
3300031959\|Ga0318530_10208801	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	801	Open in IMG/M
3300032059\|Ga0318533_10340889	Not Available	1091	Open in IMG/M
3300032065\|Ga0318513_10453826	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
3300032067\|Ga0318524_10340123	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	779	Open in IMG/M
3300032076\|Ga0306924_11491822	Not Available	717	Open in IMG/M
3300032091\|Ga0318577_10362963	Not Available	692	Open in IMG/M
3300032180\|Ga0307471_100984765	Not Available	1010	Open in IMG/M
3300032261\|Ga0306920_101062708	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1176	Open in IMG/M
3300033289\|Ga0310914_10443456	All Organisms → cellular organisms → Bacteria → Acidobacteria	1175	Open in IMG/M
3300033289\|Ga0310914_10913703	Not Available	777	Open in IMG/M
3300033289\|Ga0310914_11186051	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	665	Open in IMG/M
3300033290\|Ga0318519_10099486	All Organisms → cellular organisms → Bacteria → Acidobacteria	1563	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.82%
Loam	Environmental → Terrestrial → Soil → Loam	15.18%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	49.11%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.25%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.46%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.46%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	26.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026824	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 27 (SPAdes)	Environmental	Open in IMG/M
3300026847	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 20 (SPAdes)	Environmental	Open in IMG/M
3300026928	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 44 (SPAdes)	Environmental	Open in IMG/M
3300026934	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 10 (SPAdes)	Environmental	Open in IMG/M
3300026945	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 55 (SPAdes)	Environmental	Open in IMG/M
3300027064	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030981	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 4C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1000488922	3300000955	Soil	MNRKLHFQGALLLAGMAAALTPMAARSAPPEPSAVTVTVTAVGKK
JGI1027J12803_1003381661	3300000955	Soil	MNSKLHFQGTLLLAGMAAALTPMAARGAPPEPSAV
JGI1027J12803_1027351361	3300000955	Soil	MNRKLNFQGALLLAGMAAALTPMAARSAPTEPSAVTVTVTAVGKKDAASRAVKRDDVQLYQGKERKQ
F14TB_1046476291	3300001431	Soil	MNRKLHFQGALLLAGMAAALTPMAARSAPPEPSAVTVTVTAVGKKDAASRAV
Ga0066396_100176172	3300004267	Tropical Forest Soil	MNRKMHFQGALLLAGMAASVLTPMAARSAPPVPSTVTVTVTAAGRKDAPARAVKKDDVQPYQGKERK
Ga0066395_110137911	3300004633	Tropical Forest Soil	MNRKLHFQGALLLAGMAASVLTPVAAWSAPPEPGAVTVTVTAAGKKAAPSRAVKEVKRDDVQP*
Ga0066388_1031142533	3300005332	Tropical Forest Soil	MNRKIHFQGALLLAGLAASALTPMAAQSAPPEPSAVTVTV
Ga0070711_1012805612	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MNSKLHFQGTLLLAGMAAALIPMAARSAPLEPSAVTVTVTA
Ga0070708_1007799762	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDRKLHFQGALLLAGIAAALTPVAARSAPPEPSAVTVTVTAVGKKDAASRAVKLGENHSGRS*
Ga0070706_1004472284	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MNRKLHFQGGLLLAGMASALTPMAARSAPLEPSAVTVTVTAVGKKDAASRAVKLGENHSGRS*
Ga0070699_1004566893	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MNSKLHFQGALLLAGMAAALTPMAARSAPPEPSAVTVTVTAVGKKDAASRAVKRDDVQLYQGKERKQV
Ga0070697_1013528572	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MNRKLHFQGALLLAGMAAALTPMAARSAPPEPSAVTVTVTAVGKKDAASRAVKRDDVQLYQG
Ga0066707_106096652	3300005556	Soil	MNEKLQFQGALLLAGMAVAALTPTAARSAPPVPSGVTVTVTAVGKKDAPPRAVKKDDVQLYQGKERKQV
Ga0066903_1054324741	3300005764	Tropical Forest Soil	MNRKMHFQGALLLGGMAASALTPMAARSAPPAPSAVTVTVTAAGTKD
Ga0099793_105041872	3300007258	Vadose Zone Soil	MNKKLQFQGALLLAGMAVAALTPMAARSAPPVPSGVTVTVTAVGKKDAPPRAVKKDDVQLYQGKERKQV
Ga0099795_103432801	3300007788	Vadose Zone Soil	MNKKLHFQGALLLAGMAAALTPMAARSAPPEPGAVTVTVTAVGKKDAASRAVKKDDVQPYQGK
Ga0099795_105177281	3300007788	Vadose Zone Soil	MNRKLHLQGALLLAGLAAALTPMAAWSAPPEPSAVTVTVTAVGKKDAASRAVKKDDVQPYQGK
Ga0099829_104229731	3300009038	Vadose Zone Soil	MNKKLQFQGALLLAGMAVAALTPMAARSAPPVPSGVTVTVTAVGKKDAPPRAVKKDDVQLYQ
Ga0126379_117813451	3300010366	Tropical Forest Soil	MNIKLYFQGALLLTGMAGALTPMAARSAPPEPSAVTVTVTPSGQERRRLARR*
Ga0126383_125867371	3300010398	Tropical Forest Soil	MHFQGALLLAGMAASSLTPMAARSAPPEPSAVTVTVTAAGKKDAPTRAVKKDDVQPYQGKERKQVAD
Ga0137364_109636291	3300012198	Vadose Zone Soil	MNKKLQFQGVLLLAGMAVAALTPMAARSAPPVPSGVTVTVTAVGKK
Ga0137382_105879222	3300012200	Vadose Zone Soil	MNEKLQFQGALLLAGMAVAALTPTAARSAPPVPSGVTVTVTAV
Ga0137365_107288082	3300012201	Vadose Zone Soil	MNKKLQFQGALLLAGMAVAALTPMAARSAPPVPSGVTVTVTAVGKKDAPPRAVKKD
Ga0137399_100096151	3300012203	Vadose Zone Soil	MNKKLQFQGVLLLAGMAVAALTPMAARSAPPVPSGVTVTVTAVGKKDAPPRAVKKDDVQL
Ga0137399_109459511	3300012203	Vadose Zone Soil	MNKKLQFQGALLLAGMAVAALTPMAARSAPPVPSGVTVTVTAVGKKDAPPRAVKKDDVQL
Ga0137362_109265872	3300012205	Vadose Zone Soil	MNKKLQFQGALLLAAMAVAALTPMAARSAPPVPSAVTVTVTAVGKKDAPPR
Ga0137376_114690531	3300012208	Vadose Zone Soil	MNKKLQFQGALLLAGMAVAALTPMAARSAPPVPSGVTVTVTAVGKKD
Ga0137379_100638264	3300012209	Vadose Zone Soil	MNSKLHFQGALLLAGMAAALTPMAARSALPEPSAVTVTVTAVGKKDAASRAVKRDDVQLYQGKERKQ
Ga0137370_104918271	3300012285	Vadose Zone Soil	MSKKLQFQGALLLAGMAVAALSPIAARSAPREPSGVTV
Ga0137360_108361972	3300012361	Vadose Zone Soil	MNRKLHFQGALLLAGMAAALTPMAARSAPPEPSAVTVTVTAVGKKDAASRAVK
Ga0137358_108900151	3300012582	Vadose Zone Soil	MNKKLQFQGALLLAGMAVAALTPMAARSAPPVPSGVTVTVTAVGKKDAPPRA
Ga0137397_100604941	3300012685	Vadose Zone Soil	MNKKLQFQGALLLAAMAVAALTPMAARSAPPVPSAVTVTVTAVGKKDAPPRAVKK
Ga0137396_108915262	3300012918	Vadose Zone Soil	MNRKLHFQGALLLAGMAAAFTPMAARSAPPEPSAVTVTVTAVGKKDAASRAVKKGDVQPY
Ga0137394_109607051	3300012922	Vadose Zone Soil	MNRKLHFQGALLLAGMAATLTPMAARSAPPESSAVTVTVTAVGKKD
Ga0137404_105797761	3300012929	Vadose Zone Soil	MNSKLHFQGALLLAGMAAALTPMAARSAPPEPSAVTVTVTAVGKKDAASRAVK
Ga0164305_111171641	3300012989	Soil	MDRKLHFQGALLLAGMAAALTPMAARGAPPEPSAVTVTVTAVGKKDAASRAVKRDDV
Ga0134079_101455491	3300014166	Grasslands Soil	MNKKLQFQGALLLAGMAVAALTPMAARSAPPVPSGVTVTVTAVGKKDAPPRAVKKDDVQLYQG
Ga0137420_14049781	3300015054	Vadose Zone Soil	MNKKLQFQGALLLAGMAVAALTPMAARSAPPVPSAVTVTVTAVGKKNAP
Ga0137409_105528541	3300015245	Vadose Zone Soil	MNRKLHFQGALLLAGMALALTPVAARSAPPEPSAVTVTVTAVGKKDAASRAVKRDDVQLYQGKERKQV
Ga0137403_112859262	3300015264	Vadose Zone Soil	MNRKLHLQGALLLAGMAAALTPMAARSAPPEPSAVTVTVTAVGKKDAASHTVKRDDVELYQG
Ga0182036_104257472	3300016270	Soil	MNRKILLLAGMAASALTPMAARSAPPEPSAVTVTVTAAGKKDAP
Ga0182036_106165012	3300016270	Soil	MNRKLHFQGALLLAGMAAFALTPMAARSAPPEPSAVTVTVTA
Ga0182036_117696631	3300016270	Soil	MNRKIHFQGALLLAGLAASALTPMAAQSAPPEPSAVTVTVTAAGKKD
Ga0182041_107141383	3300016294	Soil	MNRKTHFQGVLLLAGMAASVLTPMPARSAPPQPSAVTVTVTAAGKKGAPARAV
Ga0182041_122533861	3300016294	Soil	MNRKMHFQGALLLAGMTVSALAPMAARSAPPEPSAVTVTVTA
Ga0182035_112327392	3300016341	Soil	MNRKIHFQGALLLAGMTASALTPMAARSAPPEPSAVTVTVTAAGTKDAPARAVKKDDVQPYQGKERK
Ga0182032_106250981	3300016357	Soil	MNRKLHFQGALLLTGMAAALTPMAARSAPPEPSAVTVTVTAVGKKDAASRAVKRDDVEL
Ga0182032_106704211	3300016357	Soil	MDGKLHFQGALLLAGMAVSALTPLAAWSAPPELGAVTVT
Ga0182034_101613531	3300016371	Soil	MNRKIHFQGALLLAGMTASALTPMAARSAPPEPSAVTVTVTAAGTKDAPAR
Ga0182034_114623561	3300016371	Soil	MNRKILLLAGMAASALTPMAARSAPPEPSAVTVTVTAAG
Ga0182040_110211531	3300016387	Soil	MNRKMHFQGALLLAGMTVSALAPMAARSAPPEPSAVTVTVTAAGKKDAPA
Ga0182039_104657392	3300016422	Soil	MNRKMHFQGALLLAGMAASALSPMAARSAPPEPSAVTVTVTAAGKKDAPSRAV
Ga0182039_116982742	3300016422	Soil	MNRKMHFQGALLLAGMTVSALAPMAARSAPPEPSAVTVTVTAAGKKDAPARAVKK
Ga0179590_11026171	3300020140	Vadose Zone Soil	MNRKLHFQGALLLAGMAAALTPMAARSAPPEPSAVTVTVTAVSKKDAASRAVKRDDVE
Ga0179592_102644961	3300020199	Vadose Zone Soil	MNKKLQFQGALLLAGMAVAALTPMAARSAPPVPSG
Ga0210404_107192741	3300021088	Soil	MNRKLHFQGALLLAGMAAALTPMAARSAPPEPGAVTVTVTAVGKKDATS
Ga0210385_115373281	3300021402	Soil	MNRKLHFQGALMLAGMVAALTPMAARSAPPEPSAVT
Ga0126371_129910862	3300021560	Tropical Forest Soil	MNRKMHFQGALLLAGMTASALAPMAARSAPPEPSAVTVTVTA
Ga0179591_10504604	3300024347	Vadose Zone Soil	MNKKLQFQGALLLAGMAVAALTPMAARSAPPVPSGVTVTVTAVGKKDAPPSRS
Ga0179591_11000992	3300024347	Vadose Zone Soil	MNRKLHFQGALLLAGMAAALTPMAARSAPPEPSRPSPLQ
Ga0209240_12219481	3300026304	Grasslands Soil	MNRKLHFQGALLLAGMAAALTPMAARSAPPEPSAVTVTVTAVSKKDAASRAVKRDDVELYQGKERKQVAD
Ga0257169_10599741	3300026469	Soil	MNRKLHFQGALLLAGMAAALTPMAARSAPPEPSAVTVTVTAVGK
Ga0257160_10384631	3300026489	Soil	MNKKLHFQGALLLAGMAAALTPMAARSAPPEPSAVTVTVTAVGKKDAASRAVKRDDVQL
Ga0257160_10729212	3300026489	Soil	MNRKLHFQGALLLAGMAAALIPMAARSAPPEPSAVTVTVTAVGKKDATSRE
Ga0257153_10220283	3300026490	Soil	MNKKLHFQGALLLAGMAAALTPMAARSAPPEPSAVTVTVTAVGKKDATSRAVKRDDV
Ga0179593_10604763	3300026555	Vadose Zone Soil	MNRKLHFRGALLLAGMAAALTPMAARSAPPEPVPSPLQ
Ga0179587_101525282	3300026557	Vadose Zone Soil	MNKKLQFQGALLLAGMAVAALTPMAARSAPPVPSGVTVTVTAVG
Ga0207723_1033311	3300026824	Tropical Forest Soil	MNRKMHFQGALLLAGMAASALTPMAARSAPPEPSVVTVTVTAAGKKDAPARAVKKDDVQP
Ga0207802_10033764	3300026847	Tropical Forest Soil	MNRKMHFQGALLLAGMAASALTPMAARSAPPEPSVVTVTVTAAGKKDAPARAVKKDD
Ga0207802_10223261	3300026847	Tropical Forest Soil	MNRKMDLRVALLLTGMALSALTPTAARSAPPEPSAVTVTVTAAGKKDA
Ga0207779_10099431	3300026928	Tropical Forest Soil	MNRKMHFQGALLLAGMAASALTPMAARSAPPEPSVVTVTVTAAGKKDAPARAVKKDDVQPYQGKERMQVA
Ga0207816_10395842	3300026934	Tropical Forest Soil	MNRKMDLRVALLLTGMALSALTPTAARSAPPEPSAVTVTVTAAGKKDAPARAVKKDDVQPYQGK
Ga0207743_10204293	3300026945	Tropical Forest Soil	MNRKMDLRVALLLTGMALSALTPTAARSAPPEPSAVTVTVTAAG
Ga0208724_10263571	3300027064	Forest Soil	MNRKLHFQGALLLAGMAAALTPMAARSAPPEPSAVTVT
Ga0137415_106223601	3300028536	Vadose Zone Soil	MNRKLPFQGALLLAGMAATFTPMAARSAPPEPGAVTVTVTAVGKKDTASRAVKKDDV
Ga0137415_109591111	3300028536	Vadose Zone Soil	MNRKLHFQGALLLAGMAAALTPMAARSAPPDPSAVTV
Ga0102770_105546131	3300030981	Soil	MNSKLHFQRALLLAGMAAALTPMAAQSAPPEPGAVTVTVTAVGKKDAASRAVKRDDV
Ga0170834_1006090841	3300031057	Forest Soil	MNRKLHFQGALLLAGMAAALTPMAARSAPPEPSAVTVTVTAVGKKDAASRAVKRDDVELYQGKERKQVA
Ga0170818_1027327123	3300031474	Forest Soil	MNRKLHFQGALLLAGMAAVLTPMAARSAPPDPSAVTVTVTAVGKKDA
Ga0318541_102673851	3300031545	Soil	MNRKLHFQGALLLAGMAASALTPLAAWSVPPEPGAVTVTVTAAGKKDAPSRPVKEVKRDDVQPYQGKERKQV
Ga0318538_101043903	3300031546	Soil	MNRKMHFQGALLLAGMTASAFTPIVARSAPPEPSAVTVTVTAAGKKDAPASAVKKDDVQPYQGKERK
Ga0310915_102316742	3300031573	Soil	MNRKLHFQGALLLAGMAASALTPLAAWSVPPEPGAVTVTVTAAGKKDAPSRPVKEVK
Ga0318561_107892411	3300031679	Soil	MNRKTHFQGVLLLAGMAASVLTPMPARSAPPQPSAVTVTVTAAGKKGAPARAVEK
Ga0307469_120165222	3300031720	Hardwood Forest Soil	MNRKPHFQGALLLAGMAAALTPMAARGAPPEPSAVTVTVTAVGKK
Ga0318501_100813061	3300031736	Soil	MNRKMHFQGALLLAGMTASAFTPIVARSAPPEPSAVTVTVTAAGKKDAPASAVKKDDVQ
Ga0307473_111148831	3300031820	Hardwood Forest Soil	MNRKLNFQRALLLAGMAAALTPMAARSAPPEPSAVTVTVTAVGKK
Ga0310917_110292381	3300031833	Soil	MNRKMHFQGALLLAGMAASAVTPMAARSAPPEPSAVTVTVTAARTKDAP
Ga0318511_104343151	3300031845	Soil	MNRKLHFQGALLLAGMAAFALTPMAARSAPPEPSAVTVTV
Ga0306919_102493521	3300031879	Soil	MNRKILLLAGMAASALTPMAARSAPPEPSAVTVTVTAAGKKDAPSRAVRKD
Ga0306925_121258262	3300031890	Soil	MNRKMHFQGALLLGGMAASALTPMAARSAPPAPSAVTVTVTAAG
Ga0306921_101321061	3300031912	Soil	MNRKIHFQGALLLAGLAASALTPMAAQSAPPEPSAVTVTVTAAG
Ga0306921_114660261	3300031912	Soil	MNRKMHFQGALLLAGMAASVLTPVAAWSAPPEPGAVTVTVTAAGKKAAPSRAVKEVKRDDVQPYQGKERKQ
Ga0310912_100399651	3300031941	Soil	MNRKIHFQGALLLAGMTASALTPMAARSAPPEPSAVTVTVTAAGTKDAPARAVKKDDVQPYQ
Ga0310912_105303751	3300031941	Soil	MNRKMHFQGALLLAGMAVCALTPMATRSAPPEPSAVTVTVTAAGKKGAPARAV
Ga0310912_106760511	3300031941	Soil	MNRKMHFQGALLLAGMAACALTPLAARSAPPEPSAVTVTVTAAGKKGAP
Ga0310916_109890451	3300031942	Soil	MNRKMHFQGALLLAGMAASVLTPLAARSAPPEPSAVTVTVTAAGKKDA
Ga0310910_101020471	3300031946	Soil	MNRKIHFQGALLLAGMTASALTPMAARSAPPEPSAVTVTVTAAGTKDAPARAVKKDVVQPYQGKER
Ga0310910_102994591	3300031946	Soil	MNRKMHFQGALLLAGMAASALSPMAARSAPPEPSAVTVTVTAAGKKDAP
Ga0310909_104934542	3300031947	Soil	MNRKMHFQGALLLAGMAASALTPMAARSAPPAPSA
Ga0306926_107313901	3300031954	Soil	MNRKMHFQGALLLAGMTVSALAPMAARSAPPEPSAVTVTVTAAGKKDAPARAVK
Ga0318530_102088011	3300031959	Soil	MNRKLHFQGALLLAGMAASALTPLAAWSVPPEPGAVTVTVTAAGKKDAPSRPVKEVKRDDVQPYQGKERKQVA
Ga0318533_103408892	3300032059	Soil	MNRKMHFQGALLLAGMAASAVTPMAARSAPPEPSAVTVTVTAARTK
Ga0318513_104538262	3300032065	Soil	MNRKLHFQGALLLAGMAASALTPLAAWSVPPEPGAVTVTVTAAGKKDA
Ga0318524_103401232	3300032067	Soil	MNRKMHFQGALLLAGMTASAFTPIVARSAPPEPSAVTVTVTAAGKKDAPA
Ga0306924_114918221	3300032076	Soil	MNRKMHFQGALLLAGMTVSALAPMAARSAPPEPSA
Ga0318577_103629631	3300032091	Soil	MNRKMHFQGALLLAGMTASAFTPIVARSAPPEPSAVTVT
Ga0307471_1009847651	3300032180	Hardwood Forest Soil	MNRKLHFQGALLLAGMAAALTPMAARSAPPEPSAVTVTVTAVGKKD
Ga0306920_1010627081	3300032261	Soil	MDGKLHLQGALLLAGMAASALTPMAAWSAPPEPGVVTVTVTAEGKKDTPSRAVKKDDVQPYQGKERK
Ga0310914_104434561	3300033289	Soil	MNRKMHFQGALLLAGMAASVLTPLAARSAPPEPSAVTVTVTAAGKKDAPAR
Ga0310914_109137031	3300033289	Soil	MNRKILLLAGMAASALTPMAARSAPPEPSAVTVTVTAA
Ga0310914_111860511	3300033289	Soil	MRRKMHFQGALLLAGMAASALTPMAARSAPPEPSAVTVTVTAAG
Ga0318519_100994861	3300033290	Soil	MNRKLHFQGALLLAGMAASVLTPVAAWSARPEPGAVTVTVTAAGKKAAPSRAVKE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084859

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences