Metagenome / Metatranscriptome Family F085246

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085246
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	46 residues
Representative Sequence	MMRRSLLTGLFVLFATSSAAAPPVVNPADAVAFMNTLWDRAVEVL
Number of Associated Samples	98
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	96.40 %
% of genes near scaffold ends (potentially truncated)	99.10 %
% of genes from short scaffolds (< 2000 bps)	90.99 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.955 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.135 % of family members)
Environment Ontology (ENVO)	Unclassified (37.838 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.856 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 49.32% β-sheet: 0.00% Coil/Unstructured: 50.68%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01625	PMSR	47.75
PF05235	CHAD	6.31
PF05494	MlaC	1.80
PF02771	Acyl-CoA_dh_N	0.90
PF01695	IstB_IS21	0.90
PF07589	PEP-CTERM	0.90
PF00034	Cytochrom_C	0.90
PF03450	CO_deh_flav_C	0.90
PF01850	PIN	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	47.75
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	6.31
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	6.31
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	1.80
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.90
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
All Organisms	root	All Organisms	45.05 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
cellular organisms	root	All Organisms → cellular organisms	45.05 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.14 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.23 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.90 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.42 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.90 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.70 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Acidobacteria bacterium ADurb.Bin051	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium ADurb.Bin051	0.90 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.90 %
Acidobacteria bacterium ADurb.Bin051	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium ADurb.Bin051	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	0.90 %
Acidobacteria bacterium ADurb.Bin051	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium ADurb.Bin051	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	0.90 %
Acidobacteria bacterium ADurb.Bin051	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium ADurb.Bin051	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Panarthropoda	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda	0.90 %
Acidobacteria bacterium ADurb.Bin051	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium ADurb.Bin051	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Arthropoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda	0.90 %
Acidobacteria bacterium ADurb.Bin051	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium ADurb.Bin051	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Chelicerata	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata	0.90 %
Acidobacteria bacterium ADurb.Bin051	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium ADurb.Bin051	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Pycnogonida	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Pycnogonida	0.90 %
Acidobacteria bacterium ADurb.Bin051	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium ADurb.Bin051	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Pantopoda	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Pycnogonida → Pantopoda	0.90 %
Acidobacteria bacterium ADurb.Bin051	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium ADurb.Bin051	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Nymphonidae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Pycnogonida → Pantopoda → Nymphonidae	0.90 %
Acidobacteria bacterium ADurb.Bin051	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium ADurb.Bin051	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Nymphon	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Pycnogonida → Pantopoda → Nymphonidae → Nymphon	0.90 %
Acidobacteria bacterium ADurb.Bin051	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium ADurb.Bin051	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.95 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2.70 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.70 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Nymphon striatum	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Pycnogonida → Pantopoda → Nymphonidae → Nymphon → Nymphon striatum	0.90 %
Acidobacteria bacterium ADurb.Bin051	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium ADurb.Bin051	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004635\|Ga0062388_102446108	Not Available	547	Open in IMG/M
3300005184\|Ga0066671_10727332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	639	Open in IMG/M
3300005332\|Ga0066388_106864873	Not Available	573	Open in IMG/M
3300005332\|Ga0066388_107455476	Not Available	549	Open in IMG/M
3300005439\|Ga0070711_101907633	Not Available	522	Open in IMG/M
3300005454\|Ga0066687_10072341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1672	Open in IMG/M
3300005598\|Ga0066706_11163809	Not Available	587	Open in IMG/M
3300005764\|Ga0066903_105693759	Not Available	655	Open in IMG/M
3300005764\|Ga0066903_105759264	Not Available	651	Open in IMG/M
3300005764\|Ga0066903_106274764	Not Available	621	Open in IMG/M
3300006904\|Ga0075424_102268531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	571	Open in IMG/M
3300009137\|Ga0066709_102987828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	621	Open in IMG/M
3300009143\|Ga0099792_10192000	Not Available	1156	Open in IMG/M
3300009147\|Ga0114129_12107144	Not Available	680	Open in IMG/M
3300009553\|Ga0105249_10833361	Not Available	987	Open in IMG/M
3300010046\|Ga0126384_10099628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2140	Open in IMG/M
3300010047\|Ga0126382_12055393	Not Available	545	Open in IMG/M
3300010048\|Ga0126373_13043833	Not Available	522	Open in IMG/M
3300010152\|Ga0126318_10004481	Not Available	1054	Open in IMG/M
3300010358\|Ga0126370_10173353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1600	Open in IMG/M
3300010359\|Ga0126376_11574312	Not Available	688	Open in IMG/M
3300010360\|Ga0126372_13183603	Not Available	510	Open in IMG/M
3300010361\|Ga0126378_12637801	Not Available	574	Open in IMG/M
3300010362\|Ga0126377_13321169	Not Available	520	Open in IMG/M
3300010366\|Ga0126379_11309856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	831	Open in IMG/M
3300010375\|Ga0105239_13391759	Not Available	518	Open in IMG/M
3300010376\|Ga0126381_100688698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1461	Open in IMG/M
3300010398\|Ga0126383_10945137	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Pycnogonida → Pantopoda → Nymphonidae → Nymphon → Nymphon striatum	949	Open in IMG/M
3300011270\|Ga0137391_10386555	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300011271\|Ga0137393_10575528	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300012096\|Ga0137389_11532951	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300012202\|Ga0137363_11661124	Not Available	531	Open in IMG/M
3300012917\|Ga0137395_10143574	All Organisms → cellular organisms → Bacteria → Proteobacteria	1629	Open in IMG/M
3300012918\|Ga0137396_11147181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	552	Open in IMG/M
3300012925\|Ga0137419_11843844	Not Available	518	Open in IMG/M
3300012955\|Ga0164298_11419367	Not Available	538	Open in IMG/M
3300012971\|Ga0126369_10271998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1679	Open in IMG/M
3300012971\|Ga0126369_10493873	Not Available	1281	Open in IMG/M
3300012971\|Ga0126369_12035649	Not Available	662	Open in IMG/M
3300015356\|Ga0134073_10130302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	776	Open in IMG/M
3300016319\|Ga0182033_11720016	Not Available	568	Open in IMG/M
3300016357\|Ga0182032_10071468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2347	Open in IMG/M
3300016371\|Ga0182034_11508220	Not Available	589	Open in IMG/M
3300016387\|Ga0182040_10740394	Not Available	806	Open in IMG/M
3300016404\|Ga0182037_10297238	All Organisms → cellular organisms → Bacteria → Proteobacteria	1296	Open in IMG/M
3300016422\|Ga0182039_10105421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2092	Open in IMG/M
3300016445\|Ga0182038_10535123	Not Available	1004	Open in IMG/M
3300020199\|Ga0179592_10271891	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300020579\|Ga0210407_10157371	Not Available	1753	Open in IMG/M
3300020579\|Ga0210407_11179395	Not Available	577	Open in IMG/M
3300021168\|Ga0210406_10738921	Not Available	754	Open in IMG/M
3300021168\|Ga0210406_10823731	Not Available	704	Open in IMG/M
3300021170\|Ga0210400_10075530	All Organisms → cellular organisms → Bacteria → Proteobacteria	2643	Open in IMG/M
3300021178\|Ga0210408_10265254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1369	Open in IMG/M
3300021181\|Ga0210388_10546988	Not Available	1015	Open in IMG/M
3300021362\|Ga0213882_10229683	Not Available	768	Open in IMG/M
3300021403\|Ga0210397_10779750	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium ADurb.Bin051	737	Open in IMG/M
3300021478\|Ga0210402_10183263	Not Available	1920	Open in IMG/M
3300021478\|Ga0210402_10881324	Not Available	821	Open in IMG/M
3300021479\|Ga0210410_10262705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1548	Open in IMG/M
3300021560\|Ga0126371_11503106	Not Available	802	Open in IMG/M
3300021560\|Ga0126371_12596209	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300021560\|Ga0126371_13242703	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300021560\|Ga0126371_13398323	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300025898\|Ga0207692_10029701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2600	Open in IMG/M
3300025906\|Ga0207699_11410431	Not Available	515	Open in IMG/M
3300025910\|Ga0207684_11499981	Not Available	549	Open in IMG/M
3300025928\|Ga0207700_10220516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1607	Open in IMG/M
3300026335\|Ga0209804_1028137	All Organisms → cellular organisms → Bacteria → Proteobacteria	2869	Open in IMG/M
3300026356\|Ga0257150_1003788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2010	Open in IMG/M
3300026490\|Ga0257153_1092170	Not Available	604	Open in IMG/M
3300026514\|Ga0257168_1153193	Not Available	513	Open in IMG/M
3300027074\|Ga0208092_101757	Not Available	1198	Open in IMG/M
3300027874\|Ga0209465_10040866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2205	Open in IMG/M
3300027884\|Ga0209275_10145140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1253	Open in IMG/M
3300029636\|Ga0222749_10250965	All Organisms → cellular organisms → Bacteria → Proteobacteria	900	Open in IMG/M
3300030991\|Ga0073994_11957969	Not Available	514	Open in IMG/M
3300031469\|Ga0170819_14512383	Not Available	816	Open in IMG/M
3300031474\|Ga0170818_115619095	Not Available	1270	Open in IMG/M
3300031543\|Ga0318516_10698428	Not Available	576	Open in IMG/M
3300031546\|Ga0318538_10706112	Not Available	547	Open in IMG/M
3300031573\|Ga0310915_10718501	Not Available	705	Open in IMG/M
3300031680\|Ga0318574_10040878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2398	Open in IMG/M
3300031708\|Ga0310686_109371618	Not Available	505	Open in IMG/M
3300031718\|Ga0307474_11478925	Not Available	535	Open in IMG/M
3300031748\|Ga0318492_10007431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4326	Open in IMG/M
3300031754\|Ga0307475_10513622	Not Available	962	Open in IMG/M
3300031781\|Ga0318547_10209784	All Organisms → cellular organisms → Bacteria	1166	Open in IMG/M
3300031793\|Ga0318548_10191441	All Organisms → cellular organisms → Bacteria → Proteobacteria	1003	Open in IMG/M
3300031805\|Ga0318497_10831298	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300031820\|Ga0307473_10955060	Not Available	623	Open in IMG/M
3300031821\|Ga0318567_10528854	All Organisms → cellular organisms → Bacteria → Proteobacteria	670	Open in IMG/M
3300031833\|Ga0310917_10834843	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300031845\|Ga0318511_10107181	All Organisms → cellular organisms → Bacteria → Proteobacteria	1193	Open in IMG/M
3300031879\|Ga0306919_10505798	All Organisms → cellular organisms → Bacteria → Proteobacteria	931	Open in IMG/M
3300031910\|Ga0306923_12402973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300031941\|Ga0310912_10154664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1732	Open in IMG/M
3300031941\|Ga0310912_10761181	Not Available	749	Open in IMG/M
3300031942\|Ga0310916_11433469	Not Available	565	Open in IMG/M
3300031946\|Ga0310910_11338480	All Organisms → cellular organisms → Bacteria → Proteobacteria	552	Open in IMG/M
3300031947\|Ga0310909_10672949	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300031954\|Ga0306926_10843542	All Organisms → cellular organisms → Bacteria → Proteobacteria	1101	Open in IMG/M
3300031959\|Ga0318530_10303038	Not Available	660	Open in IMG/M
3300031962\|Ga0307479_10326824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1516	Open in IMG/M
3300032042\|Ga0318545_10034580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1670	Open in IMG/M
3300032042\|Ga0318545_10225060	Not Available	673	Open in IMG/M
3300032065\|Ga0318513_10668609	Not Available	509	Open in IMG/M
3300032090\|Ga0318518_10387411	Not Available	717	Open in IMG/M
3300032094\|Ga0318540_10404100	Not Available	660	Open in IMG/M
3300032261\|Ga0306920_102734174	Not Available	673	Open in IMG/M
3300033290\|Ga0318519_10528969	Not Available	712	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.40%
Host-Associated	Host-Associated	3.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.59%
Plants	Host-Associated → Plants	3.60%
Aquatic	Environmental → Aquatic	1.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.60%
Freshwater	Environmental → Aquatic → Freshwater	1.80%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.98%
Loam	Environmental → Terrestrial → Soil → Loam	11.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.60%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.90%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.90%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	50.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.03%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.21%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.60%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.90%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.11%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.60%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.80%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.90%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.90%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300027074	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF014 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062388_1024461081	3300004635	Bog Forest Soil	MMRRSLLTSLFVLITTATLAAPPPVNPVDALAFMRQLWDRAAELLNGKTDPAIRRARFRQLFHE
Ga0066671_107273321	3300005184	Soil	MMRRSLLTSLFVLIATTTLAAPPTVNPADVLTFMHQLWDRAAELRNDKTDPAIRRARFRQLFHED
Ga0066388_1068648732	3300005332	Tropical Forest Soil	MMRRSLLTSLFVLIATTPLAAPPPVNPADAIAFMNQLWNRAAELLNNK
Ga0066388_1074554761	3300005332	Tropical Forest Soil	MMRRSLLTVLLVLVATTSLAAAPPVNPADAIAFMNQLWNRAIELLNNK
Ga0070711_1019076331	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MMRRSPITLLLVLIATTSLAAPPPVNPADRIAFMNQLWNRAVELLD
Ga0066687_100723411	3300005454	Soil	MTRRFLLAGLFSLFMTSSMAAPPLVNPADAVAFMNTLWDR
Ga0066706_111638091	3300005598	Soil	MMRRSLLTGLFVLFATASMAAAPIVNPADGVAFMNNLWDRAVEVLNNKT
Ga0066903_1056937592	3300005764	Tropical Forest Soil	MMRRSLIAGLFILSATAAFAAPPMANPADAVAFMNQLWGRAVDVLNNKADP
Ga0066903_1057592641	3300005764	Tropical Forest Soil	MMRRSFLSSLFVLIATTPLPASPQVNLADAAAFMNQLWHR
Ga0066903_1062747641	3300005764	Tropical Forest Soil	MMRRSLLTSLFVLIATTTLAAPPPVNPADAVAFMSQLWNRAAELLNNKTD
Ga0075424_1022685312	3300006904	Populus Rhizosphere	MVRRSLLTGVFVLMAAPCLAAAPTADPADAVAFMNRLWDRAVEVLNNKSDPNI
Ga0066709_1029878281	3300009137	Grasslands Soil	MMRRSLLTGLFLLFATASTATPPVVNPADAVAFMNTLWDRAVEVLNNKTDPAMREARFRE
Ga0099792_101920001	3300009143	Vadose Zone Soil	MMRRSFLTGLFVLFATISMAAPPVVNPADAVAFMNTLWDRA
Ga0114129_121071441	3300009147	Populus Rhizosphere	MKMVRRSLLMSAFVLMAAPCLAAAPTADPADAVDFMNRLWDR
Ga0105249_108333611	3300009553	Switchgrass Rhizosphere	MRRFLLSGFFALIAGGPLAAPPPVNPADAVAFMNQL
Ga0126384_100996283	3300010046	Tropical Forest Soil	MLRRSLLAALFVLTATASNAAPPPVNPADAVAFMNRLWD
Ga0126382_120553931	3300010047	Tropical Forest Soil	MMRRSLLTVLLVLVATTSLAAAPPVNPTDAIAFMNQLWNRAIELLNNKTDPA
Ga0126373_130438331	3300010048	Tropical Forest Soil	MIRRSLLAGAFFLFATSSMAAPPLVNPADAVAFMNRLWDRAVEVLNNKTDP
Ga0126318_100044811	3300010152	Soil	MMRRFLLTSLFVLFATASTAATPVVNPADAVAFMNQLWDRAVEVLNHKTDPSFR
Ga0126370_101733533	3300010358	Tropical Forest Soil	MLRRSLLAALFVQTATASNAAPPPVNPADAVAFMNRLWDRAVEVLNRKT
Ga0126376_115743121	3300010359	Tropical Forest Soil	MMRRSLIAGLFILSATAAFAAPPMANPADAVAFMNQLWGRAVDVLNNKADPVV
Ga0126372_131836031	3300010360	Tropical Forest Soil	MMRLSRIIMLLVLITTTSLAAPPPVNPADPIAFMNQLWNRAVELLDNKTDPAIRQARF
Ga0126378_126378011	3300010361	Tropical Forest Soil	MMRRSLLSSLFVLITTSSLAASPSVNPADAVAFMNQLWDRAA
Ga0126377_133211691	3300010362	Tropical Forest Soil	MMRRSLLISLFVLIANTASGTSTVNPADAVAVMNRLWNQAVELMNNKTDPAI
Ga0126379_113098561	3300010366	Tropical Forest Soil	MMRRALLTIFLILTATTSSAAPPPVNPADAPAFMN
Ga0105239_133917591	3300010375	Corn Rhizosphere	MMRCSLFTSFFLLIATPSLAAPPVVNPADAAAFMNHLWDSAVEVLNNKSDPAVRQA
Ga0126381_1006886981	3300010376	Tropical Forest Soil	MMRRSLLTSLFVLIATTPLAAPPPVNPADAIAFMNQLWNRA
Ga0126383_109451372	3300010398	Tropical Forest Soil	MLRRSLLAACFVLTATASNAAPPPVNPADAVAFMNRLWDRAVEVLN
Ga0137391_103865553	3300011270	Vadose Zone Soil	MMRRSLLTSLFLLMSTASFAAPPVVNPADAVAFMNQLWERAVEVLNKRSDPGPQ
Ga0137393_105755282	3300011271	Vadose Zone Soil	MMRRSLLTSLFLLMSTASLAAPPVVNPADAVAFMNQLWDRAVEVLNKKA
Ga0137389_115329512	3300012096	Vadose Zone Soil	MMRRSLLTSLFLLMSTASLAAPPVVNPADAVAFMNQLWDRAVE
Ga0137363_116611241	3300012202	Vadose Zone Soil	MMRRSLLTGLFVLFATASAAAPPVVNPADAVAFMNTLWDRAVEVLNNKTD
Ga0137395_101435743	3300012917	Vadose Zone Soil	MMRRSLLTSLFLLMSTAALAAPPVVNPADAVAFMNQLWDRAVEVLNKKSDPALRQ
Ga0137396_111471811	3300012918	Vadose Zone Soil	MMRRSLLTGLFVLFATSSAAAPPVVNPADAVAFMNTLWDRA
Ga0137419_118438442	3300012925	Vadose Zone Soil	MMRRSLLTGLFVLFATSSAAAPPVVNPADAVAFMNTLWDRAVEVL
Ga0164298_114193671	3300012955	Soil	MMRRSFLTGLFVLFATASMAAPPVVNPADAVAFMYTLWDRAVEVLNNK
Ga0126369_102719983	3300012971	Tropical Forest Soil	MLRRSLLAALFVLTATASNAAPPPVNPADAVAFMNRLWDRAVEVLN
Ga0126369_104938732	3300012971	Tropical Forest Soil	MMRRSLLTSLFVLIATATLAAPPPVNPADALAFMHQLWDRAAELL
Ga0126369_120356491	3300012971	Tropical Forest Soil	MMRRSLLTSLFILIATATLAASPPVNPADALAFMHQLWDQAAELLNGKTDPAIRRARFRQLF
Ga0134073_101303022	3300015356	Grasslands Soil	MMRRSLLTSLFVLIATTTLAAPPTVNPADVLTFMHQLWDRAAELRNDKTDPVIRRARFRQLFH
Ga0182033_117200161	3300016319	Soil	MMRRSLLTSLFLLIATAPFAAPPPINPADGIAFMNQLW
Ga0182032_100714681	3300016357	Soil	MIRRSLLTGLFVVMATPCLAAPPMVNPADAVAFMNRLWDRAVE
Ga0182034_115082201	3300016371	Soil	MIRRSFLAGLFILFATSSIAAPPLVNPADAVAFMN
Ga0182040_107403942	3300016387	Soil	MMRRSLLLTSLCLLMTSASLAAPPIVNPADAVAFMNKLWNRALEILD
Ga0182037_102972382	3300016404	Soil	MMRRSLLTSLFLLIATAPFAAPPPINPADGIAFMNQLWNRAA
Ga0182039_101054213	3300016422	Soil	MIRRSLLTGLFVVMATPSLAAPPMVNPADAVAFMNRLWDRA
Ga0182038_105351231	3300016445	Soil	MMRHSLLTGLFVLVATATMAAPPVVNPADAVAFMNTLWDRAVEVL
Ga0179592_102718912	3300020199	Vadose Zone Soil	MMRRSLLTGIFVLFATASSAAPPGVSPADAVAFMNQLWDRAVEVLSNKAD
Ga0210407_101573711	3300020579	Soil	MMRRSLLTALLVLVATTSLAAAPPVNPADAIAFMNQVWNRAIELLNNKTD
Ga0210407_111793951	3300020579	Soil	MMRRSLLTVLLVLVATTSLAAAPPVNPADAIAFMNQVWNRAIELLNNKT
Ga0210406_107389211	3300021168	Soil	MMRRSLLTVLLVLVATTSLAAAPPVNPADAIAFMNQV
Ga0210406_108237312	3300021168	Soil	MRRSFLTGLFVLFATTSMAAPPVVNPADAVAFMNTLWDRAVEVLNNK
Ga0210400_100755301	3300021170	Soil	MMRRSLLTVLLVLVATTSLAAAPPVNPADAIAFMNQVWNRAIELLNNKTDPAI
Ga0210408_102652541	3300021178	Soil	MRRSLLTGLLICFATAGSAAPPLVNPADAVAFMNTLWDRAVEVL
Ga0210388_105469881	3300021181	Soil	MRRSFLTSLFVLFATTSMAAPPVVNPADAVAFMNTLWD
Ga0213882_102296832	3300021362	Exposed Rock	MRRFLLTGLLVLTATASNAAPPPVNPADAVAFMNRLWDRAAEVLSKKADPAVREARFREIFRQDF
Ga0210397_107797502	3300021403	Soil	MMRRSLLTGLLICFATAGSAAPPLVNPADAVAFMNTLWDRAV
Ga0210402_101832631	3300021478	Soil	MRRRSLLAALLVLIATTSLAAPPPVNPEDATAFMN
Ga0210402_108813241	3300021478	Soil	MMRRSLLTILLVLIATTSLTAPLPVNPADAIAFMNQLWN
Ga0210410_102627051	3300021479	Soil	MIRRFFLTGIFILFATASAAAPPMVNPADAVAFMNKL
Ga0126371_115031061	3300021560	Tropical Forest Soil	MLRRSLLAALFVLTATASNAAPPPVNPADAVAFMNRLWDRAVEVLNRKTDPAVREARF
Ga0126371_125962092	3300021560	Tropical Forest Soil	MMRRALLTIFWILTATTSSAAPPPVNPADALAFMNQLWS
Ga0126371_132427031	3300021560	Tropical Forest Soil	MMRRTLLTIFLTLTATTSLAAPPPVNPADALAFMNQLWSRAVELLNNKTDPTI
Ga0126371_133983231	3300021560	Tropical Forest Soil	MLRRTLLAALFVLTATASNAAPPPVNPADAVAFMNRLWDRAVEVLNKKDDPA
Ga0207692_100297013	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MIRRFFLTGIFILFATASAAAPPMVNPADAVAFMNKLWDRAAELLNNKT
Ga0207699_114104311	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MMRRSLLTVLLVLVATTSLAAAPPVNPADAIAFMNQVWNRAIELPNNKTDPAIR
Ga0207684_114999811	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MMRRSLLTSLFLLMSTAALAAPPVVNPADAVAFMNQLWDRAVEVLNTK
Ga0207700_102205163	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MMRRSLLTVLLVLVATTSLAAAPPVNPADAIAFMNQ
Ga0209804_10281371	3300026335	Soil	LLTSLFVLIATTTLAAPPTVKPADVLTFMHQLWDRC
Ga0257150_10037883	3300026356	Soil	MMRRSFLTGLFVLFATTSMAAPPVVNPADAVAFMN
Ga0257153_10921702	3300026490	Soil	MMRRSLLTSLFLLMSTAALAAPPVVNPADAVAFMNQLWDRAVEVLNKKSDPAL
Ga0257168_11531932	3300026514	Soil	MMRRSLLTSLFLLMSTAALAAPPVVNPADAVAFMNQLWDRAV
Ga0208092_1017573	3300027074	Forest Soil	MRRSFLTGLFVLFATTSMAAPPVVNPADAVAFMNTLWDRAVEVLNNKSDPT
Ga0209465_100408663	3300027874	Tropical Forest Soil	MMRRALLTIFLILTATTSSAAPPPVNPADALAFMNQLWSRAVELLNNKTIPR
Ga0209275_101451401	3300027884	Soil	MRRSFLTGLFVLFATTSMAAPPVVNPADAVAFMNKLWDRA
Ga0222749_102509653	3300029636	Soil	MMRRSLLTALLVLVATTSLAAAPPVNPADAISFMNQVWNRAIELLNNKTDPAI
Ga0073994_119579692	3300030991	Soil	MMRRSLLTSLFLLMSTAALAAPPVVNPADAVAFMNQLWDRAVE
Ga0170819_145123831	3300031469	Forest Soil	MMRRSPIIMLLVLIATTSLAAPPPVNPADPITFMNQLWNRAVELLDNKTDPAIRQAR
Ga0170818_1156190953	3300031474	Forest Soil	MRRSFLTGLFVLFATISMAAPPVVNPADAVAFMNTLWDRAVEVLNNKSD
Ga0318516_106984282	3300031543	Soil	MLRRSLLAALFVLIATASNAAPPPVNPADAVAFMNRLWDRAVEVLNRKAD
Ga0318538_107061121	3300031546	Soil	MMRRSLLTSFVVLFATASLAAPPPVNPADAAAFMNQLW
Ga0310915_107185012	3300031573	Soil	MMRRSLLTGLLLCFATAASAAPPLVNPADAVAFMNTLWDRAVEVLNNKTDPAMREAHFRELFRTDFDCPGIA
Ga0318574_100408781	3300031680	Soil	MMRRSFLTSLLVIIATASLAAPPLVNPADATAFMNQLWSRAVELLNNKTDPALRQA
Ga0310686_1093716181	3300031708	Soil	MMRRSLLTGLFLLFATASTAAPPVVNPADAVAFMNPLWDR
Ga0307474_114789252	3300031718	Hardwood Forest Soil	MMRRSLLTVLLVLVATTSLAAAPPVNPADAIAFMNQVWNRAI
Ga0318492_100074311	3300031748	Soil	MLRRSLLAALFVLTATASNAAPPPVNPADAVAFMNRLWGRAVEVLNRK
Ga0307475_105136222	3300031754	Hardwood Forest Soil	MMRRSLLTILLVLIATTSLAAPLPVNPADAIAFMNQLWNRAAELLNNKTDPAIRQ
Ga0318547_102097842	3300031781	Soil	MMRRALLTIFLILTATTSSAAPPPVNPADAIAFMNQLWSRAVELLNN
Ga0318548_101914411	3300031793	Soil	MMRRSLLTSLVLLFATAPLAAPPPVNPADAAAFMNQLWTRAVEVLNKKAD
Ga0318497_108312981	3300031805	Soil	MMRRSLLTGLLLCFATAASAAPPLVNPADAVAFMNTLW
Ga0307473_109550602	3300031820	Hardwood Forest Soil	MRRSFLTGLFVLFATASMAAPPVVNPADAVAFMNTLWDRAVEVLNNK
Ga0318567_105288541	3300031821	Soil	MMRRSFLTSLLVIIATASLAAPPLVNPADATAWMN
Ga0310917_108348431	3300031833	Soil	MLRRSLLAALFVLIATASNAAPPPVNPADAVAFMNRLWDRAVEVLNR
Ga0318511_101071813	3300031845	Soil	MMRRSFLTSLLVIIATASLAAPPLVNPADATAFMNQLWS
Ga0306919_105057982	3300031879	Soil	MIRRSLLTGLFVVMATPCLAAPPMVNPADAVAFMNRLWDRAVELLNNKTDPTAREARFRDLFHTDFD
Ga0306923_124029732	3300031910	Soil	MMRRALLTIFLILTATTSSAAPPPVNPADALAFMNQLWSRAVELLNNKTDP
Ga0310912_101546641	3300031941	Soil	MMRRSLLTSFVVLFATASLAAPPPVNPADAAAFMNQLWTRAVEVLNKKADPT
Ga0310912_107611811	3300031941	Soil	MLRRSLLAALFVLIATASNAAPPPVNPADAVAFMNRLWDRAVEVLNRKADPAVREARFRE
Ga0310916_114334692	3300031942	Soil	MIRRSFLAGLFILFATSSMAAPPLVNPADAVAFMNR
Ga0310910_113384802	3300031946	Soil	MMRRSLLPTSLCLLMTSASLAAPPIVNPPDAVAFMNKLWNRALEILDNRVDPAV
Ga0310909_106729491	3300031947	Soil	MMRRSLLTSLVVLFATASLAAPPPVNPADAAAFMNQLWTRA
Ga0306926_108435424	3300031954	Soil	MMRRSLLTSFVVLFATASLAAPPPVNPADAAAFMN
Ga0318530_103030382	3300031959	Soil	MMRRSFLTSLLVIIATASLAAPPLVNPADATAFMNQLWSRA
Ga0307479_103268243	3300031962	Hardwood Forest Soil	MRRSFLTGLFVLFATTSMAAPPVVNPADAVAFMNK
Ga0318545_100345803	3300032042	Soil	MMRRSFLTSLLVIIATASLAAPPLVNPADATAFMNQLWSRAVELLNN
Ga0318545_102250601	3300032042	Soil	MMRRSLLTSLVVLFATASLAAPPPVNPADAAAFMNQLWTRAV
Ga0318513_106686091	3300032065	Soil	MMRRSLLSSLLVLITTSSLAASPSVNPADAVALMY
Ga0318518_103874111	3300032090	Soil	MLRRSLLAALFVLIATASNAAPPPVNPADAVAFMNRLWDRAVEVLNRKADPAV
Ga0318540_104041002	3300032094	Soil	MMRRSLLTSLVVLFATASLAAPPPVNPADAAAFMNQLW
Ga0306920_1027341741	3300032261	Soil	MMRRSLLPTSLCLLMTSASLAAPPIVNPPDAVAFMNKLWNRALEILDN
Ga0318519_105289691	3300033290	Soil	MTRRSLLTGLFILVSVGSLAAPPVVNPADAVAFMNRL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085246

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences