Metagenome / Metatranscriptome Family F085298

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085298
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	94 residues
Representative Sequence	MYMRIVRAQPPQGQADALAQKWEAFWPERLRAQPGFRHAHFGIDRATGAIAGVTVFDDKPDDALFERLSREFRDTLGQAGPAQPPESTVFEIASEV
Number of Associated Samples	42
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.69 %
% of genes near scaffold ends (potentially truncated)	25.23 %
% of genes from short scaffolds (< 2000 bps)	86.49 %
Associated GOLD sequencing projects	41
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.658 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (62.162 % of family members)
Environment Ontology (ENVO)	Unclassified (63.063 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (81.982 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.23% β-sheet: 24.19% Coil/Unstructured: 47.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
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SCOP family	SCOP domain	Representative PDB	TM-score
d.58.4.5: Dimeric alpha+beta barrel	d1iuja_	1iuj	0.78
d.58.4.3: Dimeric alpha+beta barrel	d1lq9a_	1lq9	0.77
d.58.4.17: Dimeric alpha+beta barrel	d6m35a_	6m35	0.75
d.58.4.0: Dimeric alpha+beta barrel	d2bbea_	2bbe	0.74
d.58.4.11: Dimeric alpha+beta barrel	d2pd1a1	2pd1	0.74

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF13302	Acetyltransf_3	2.70
PF08241	Methyltransf_11	0.90
PF00989	PAS	0.90
PF01381	HTH_3	0.90
PF02706	Wzz	0.90
PF13238	AAA_18	0.90
PF12857	TOBE_3	0.90
PF07045	DUF1330	0.90
PF05199	GMC_oxred_C	0.90
PF03928	HbpS-like	0.90
PF08281	Sigma70_r4_2	0.90
PF12728	HTH_17	0.90
PF00326	Peptidase_S9	0.90
PF13524	Glyco_trans_1_2	0.90
PF04542	Sigma70_r2	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.90
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.90
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.90
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.90
COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	Cell wall/membrane/envelope biogenesis [M]	0.90
COG3524	Capsule polysaccharide export protein KpsE/RkpR	Cell wall/membrane/envelope biogenesis [M]	0.90
COG3765	LPS O-antigen chain length determinant protein, WzzB/FepE family	Cell wall/membrane/envelope biogenesis [M]	0.90
COG3944	Capsular polysaccharide biosynthesis protein YveK	Cell wall/membrane/envelope biogenesis [M]	0.90
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.90
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.66 %
Unclassified	root	N/A	42.34 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.66 %
Unclassified	root	N/A	42.34 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.66 %
Unclassified	root	N/A	42.34 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	50.45 %
Unclassified	root	N/A	42.34 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	15.32 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.70 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	9.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.70 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
unclassified Chloroflexia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia	9.91 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.80 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.90 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	9.91 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1.80 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.90 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	9.91 %
unclassified Nocardioidaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae	1.80 %
Natronosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Natronosporangium	0.90 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	9.91 %
Nocardioidaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1.80 %
Natronosporangium hydrolyticum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Natronosporangium → Natronosporangium hydrolyticum	0.90 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_104531012	All Organisms → cellular organisms → Bacteria → Terrabacteria group	505	Open in IMG/M
3300002568\|C688J35102_117701396	Not Available	500	Open in IMG/M
3300004643\|Ga0062591_101276447	All Organisms → cellular organisms → Bacteria → Terrabacteria group	720	Open in IMG/M
3300005614\|Ga0068856_101165540	All Organisms → cellular organisms → Bacteria → Terrabacteria group	787	Open in IMG/M
3300006845\|Ga0075421_100812556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1075	Open in IMG/M
3300006853\|Ga0075420_101032234	All Organisms → cellular organisms → Bacteria → Terrabacteria group	707	Open in IMG/M
3300006894\|Ga0079215_10750913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	670	Open in IMG/M
3300009789\|Ga0126307_10102692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2267	Open in IMG/M
3300009789\|Ga0126307_10123802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	2060	Open in IMG/M
3300009789\|Ga0126307_10286361	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1326	Open in IMG/M
3300009789\|Ga0126307_10330282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1227	Open in IMG/M
3300009789\|Ga0126307_10902761	Not Available	714	Open in IMG/M
3300009789\|Ga0126307_11017728	All Organisms → cellular organisms → Bacteria → Terrabacteria group	669	Open in IMG/M
3300009789\|Ga0126307_11399429	Not Available	567	Open in IMG/M
3300009789\|Ga0126307_11647349	All Organisms → cellular organisms → Bacteria → Terrabacteria group	521	Open in IMG/M
3300009840\|Ga0126313_10067733	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2559	Open in IMG/M
3300009840\|Ga0126313_10190870	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1568	Open in IMG/M
3300009840\|Ga0126313_10253711	Not Available	1365	Open in IMG/M
3300009840\|Ga0126313_10283814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1291	Open in IMG/M
3300009840\|Ga0126313_10369034	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1134	Open in IMG/M
3300009840\|Ga0126313_10514315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	960	Open in IMG/M
3300009840\|Ga0126313_10592829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	892	Open in IMG/M
3300009840\|Ga0126313_10897161	Not Available	723	Open in IMG/M
3300009840\|Ga0126313_11170496	Not Available	633	Open in IMG/M
3300010036\|Ga0126305_10262302	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1113	Open in IMG/M
3300010037\|Ga0126304_10134862	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1587	Open in IMG/M
3300010037\|Ga0126304_10188950	All Organisms → cellular organisms → Bacteria → Proteobacteria	1344	Open in IMG/M
3300010037\|Ga0126304_10310103	All Organisms → cellular organisms → Bacteria	1046	Open in IMG/M
3300010037\|Ga0126304_10411425	All Organisms → cellular organisms → Bacteria → Terrabacteria group	904	Open in IMG/M
3300010037\|Ga0126304_10911555	All Organisms → cellular organisms → Bacteria → Terrabacteria group	598	Open in IMG/M
3300010038\|Ga0126315_10188965	Not Available	1236	Open in IMG/M
3300010038\|Ga0126315_10246179	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1090	Open in IMG/M
3300010038\|Ga0126315_10263350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1055	Open in IMG/M
3300010038\|Ga0126315_10446773	Not Available	818	Open in IMG/M
3300010038\|Ga0126315_10481107	Not Available	790	Open in IMG/M
3300010038\|Ga0126315_10806282	All Organisms → cellular organisms → Bacteria → Terrabacteria group	619	Open in IMG/M
3300010038\|Ga0126315_11268863	Not Available	501	Open in IMG/M
3300010039\|Ga0126309_10399599	Not Available	822	Open in IMG/M
3300010039\|Ga0126309_10633750	Not Available	677	Open in IMG/M
3300010039\|Ga0126309_10768555	Not Available	626	Open in IMG/M
3300010040\|Ga0126308_10217694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1232	Open in IMG/M
3300010040\|Ga0126308_10279504	Not Available	1092	Open in IMG/M
3300010040\|Ga0126308_10382460	Not Available	937	Open in IMG/M
3300010040\|Ga0126308_10746885	Not Available	675	Open in IMG/M
3300010040\|Ga0126308_10943546	Not Available	603	Open in IMG/M
3300010040\|Ga0126308_11178890	Not Available	541	Open in IMG/M
3300010040\|Ga0126308_11370458	All Organisms → cellular organisms → Bacteria → Terrabacteria group	502	Open in IMG/M
3300010041\|Ga0126312_10167014	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1532	Open in IMG/M
3300010041\|Ga0126312_10175116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1495	Open in IMG/M
3300010041\|Ga0126312_10237762	Not Available	1278	Open in IMG/M
3300010041\|Ga0126312_10270840	Not Available	1195	Open in IMG/M
3300010041\|Ga0126312_11460789	All Organisms → cellular organisms → Bacteria → Terrabacteria group	507	Open in IMG/M
3300010042\|Ga0126314_10915407	Not Available	649	Open in IMG/M
3300010042\|Ga0126314_11124647	Not Available	585	Open in IMG/M
3300010042\|Ga0126314_11399792	All Organisms → cellular organisms → Bacteria → Terrabacteria group	525	Open in IMG/M
3300010042\|Ga0126314_11512923	Not Available	504	Open in IMG/M
3300010044\|Ga0126310_10275536	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1147	Open in IMG/M
3300010044\|Ga0126310_10315512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1082	Open in IMG/M
3300010044\|Ga0126310_10572275	All Organisms → cellular organisms → Bacteria → Terrabacteria group	838	Open in IMG/M
3300010044\|Ga0126310_10619093	Not Available	810	Open in IMG/M
3300010044\|Ga0126310_11174991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	614	Open in IMG/M
3300010044\|Ga0126310_11326272	Not Available	583	Open in IMG/M
3300010045\|Ga0126311_10211833	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1419	Open in IMG/M
3300010045\|Ga0126311_10344233	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1134	Open in IMG/M
3300010045\|Ga0126311_10468323	All Organisms → cellular organisms → Bacteria → Terrabacteria group	981	Open in IMG/M
3300010045\|Ga0126311_10471446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	978	Open in IMG/M
3300010045\|Ga0126311_10868462	All Organisms → cellular organisms → Bacteria → Terrabacteria group	731	Open in IMG/M
3300010045\|Ga0126311_11309274	Not Available	602	Open in IMG/M
3300010045\|Ga0126311_11376817	All Organisms → cellular organisms → Bacteria → Terrabacteria group	588	Open in IMG/M
3300010045\|Ga0126311_11527533	All Organisms → cellular organisms → Bacteria → Terrabacteria group	560	Open in IMG/M
3300010152\|Ga0126318_10621148	All Organisms → cellular organisms → Bacteria → Terrabacteria group	653	Open in IMG/M
3300010166\|Ga0126306_10147634	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1744	Open in IMG/M
3300010166\|Ga0126306_10410944	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300010166\|Ga0126306_10536150	Not Available	928	Open in IMG/M
3300010166\|Ga0126306_10779333	Not Available	770	Open in IMG/M
3300010166\|Ga0126306_10930899	All Organisms → cellular organisms → Bacteria → Terrabacteria group	706	Open in IMG/M
3300012186\|Ga0136620_10128867	Not Available	1152	Open in IMG/M
3300012188\|Ga0136618_10093679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1325	Open in IMG/M
3300012212\|Ga0150985_116025466	All Organisms → cellular organisms → Bacteria → Terrabacteria group	519	Open in IMG/M
3300012212\|Ga0150985_123054277	Not Available	553	Open in IMG/M
3300012469\|Ga0150984_106374622	Not Available	897	Open in IMG/M
3300012469\|Ga0150984_118420498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	602	Open in IMG/M
3300012469\|Ga0150984_122739641	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1494	Open in IMG/M
3300012678\|Ga0136615_10077082	All Organisms → cellular organisms → Bacteria	1643	Open in IMG/M
3300012680\|Ga0136612_10010545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	4557	Open in IMG/M
3300012680\|Ga0136612_10072158	Not Available	1739	Open in IMG/M
3300012680\|Ga0136612_10123600	Not Available	1314	Open in IMG/M
3300012684\|Ga0136614_10059847	All Organisms → cellular organisms → Bacteria	2881	Open in IMG/M
3300012684\|Ga0136614_10544739	All Organisms → cellular organisms → Bacteria → Terrabacteria group	832	Open in IMG/M
3300012684\|Ga0136614_10634422	Not Available	758	Open in IMG/M
3300017787\|Ga0183260_10100104	All Organisms → cellular organisms → Bacteria	2099	Open in IMG/M
3300017787\|Ga0183260_10102446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2071	Open in IMG/M
3300017789\|Ga0136617_10077508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	2899	Open in IMG/M
3300022467\|Ga0224712_10255034	All Organisms → cellular organisms → Bacteria → Terrabacteria group	811	Open in IMG/M
3300027909\|Ga0209382_11507034	Not Available	670	Open in IMG/M
3300027909\|Ga0209382_11546950	Not Available	659	Open in IMG/M
3300028705\|Ga0307276_10084155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Natronosporangium → Natronosporangium hydrolyticum	752	Open in IMG/M
3300031731\|Ga0307405_10310877	Not Available	1200	Open in IMG/M
3300031852\|Ga0307410_10573902	Not Available	938	Open in IMG/M
3300031903\|Ga0307407_11682973	Not Available	505	Open in IMG/M
3300031995\|Ga0307409_101612079	Not Available	677	Open in IMG/M
3300032002\|Ga0307416_102287111	All Organisms → cellular organisms → Bacteria → Terrabacteria group	641	Open in IMG/M
3300032005\|Ga0307411_10170664	All Organisms → cellular organisms → Bacteria	1640	Open in IMG/M
3300032005\|Ga0307411_10406459	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1127	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.78%
Host-Associated	Host-Associated	16.22%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.27%
Plants	Host-Associated → Plants	16.22%
Aquatic	Environmental → Aquatic	13.51%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.27%
Freshwater	Environmental → Aquatic → Freshwater	13.51%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.51%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.37%
Ice	Environmental → Aquatic → Freshwater → Ice	12.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.80%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.90%
Loam	Environmental → Terrestrial → Soil → Loam	0.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	63.96%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	12.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	62.16%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	12.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	6.31%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.60%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.80%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.80%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300012186	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ416 (21.06)	Environmental	Open in IMG/M
3300012188	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ330 (21.06)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012527	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ83 (22.06)	Environmental	Open in IMG/M
3300012678	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06)	Environmental	Open in IMG/M
3300012680	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)	Environmental	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1045310121	3300000364	Soil	MYMRIVRAQPPAGQAEEIAQKWQTFWPERMRAQPGFRHAHFGIDRATGATAAVTVFDGQPDAALLERLMREFRELVGLTGSAQAPEVTLYEIVAEV*
C688J35102_1177013962	3300002568	Soil	MYMRIVRAQPPAGQADAIAEKWKTFYPERMRAQPGFRHSHFGIDRATGATATVAVFDDKPDEALFERLLREFRDTLGQSGPAQD
Ga0062591_1002693031	3300004643	Soil	MYMRIVRAQPPEGQADELARKWNDFWPERLRAQPGFRHAHFGIDRATGAIAGVTVFDDRPDNVLFERLQRE
Ga0062591_1012764471	3300004643	Soil	MYMRIVRAQPAQGQADEVARKWEAFWPEKMRAQPGFRHAYFGIDRATGAIAGVTVFDEQPDAAVLNPLLDEFRATLGASNPAQPPEITVYEIAAKA*
Ga0068856_1011655401	3300005614	Corn Rhizosphere	MYMRIVRAQPSAGQADALADQWAVFWPERLRALPGFRHAHFGVDRQSGAIAGVTVFDQRPDDATFERLSAEFQATLGDAQPAQPREMTVYEITSDV*
Ga0075421_1008125561	3300006845	Populus Rhizosphere	ARKWEAFWPEKMRAQPGFRRAYFGIDRDTGAIVGVTVYDEKPDAAVLNPLLDEFRATLGASTPAQPPEVTVYEIAAEA*
Ga0075420_1010322341	3300006853	Populus Rhizosphere	RAQPAEGQADEVARKWEAFWPEKMRALSGFRHAYFGIDRATGAVAGVTVFDDKPDAAVLNPLLDEFRATLGASNPAQPPEITVYEIAAEA*
Ga0079215_107509132	3300006894	Agricultural Soil	MYMRIVWAQPAQGQADEVARRWAEFWPERLKAQPGFRHAHFGIDRATGATSGVTVFDDKPDDAVFARLLQEFRDTLGPSNPAQPPEAAVYEIVAEA*
Ga0079218_111314542	3300007004	Agricultural Soil	MYMRIVWAQPAQGQADEVARRWAEFWPERLRAQPGFRHAHFGIDRATGATSGVTVFDDKPDDAVFARLLQEF
Ga0126307_101026924	3300009789	Serpentine Soil	MYMRIVRAQPPQGQADALAQKWETFWPERLRAQPGFRHAHFGIDRATGAIAGVTVFDDKPDDALFERLSREFRDTLGQASPAQ
Ga0126307_101238023	3300009789	Serpentine Soil	ALVAVVDTGGFVVYMRIVRAQPPQGQADEVARKWEAFWPERLRDQPGFSHAHFGVDRATGAIAGVTVFDERPDDALFERLSREFQDTLGQAGPAQGREATVFEIVAGA*
Ga0126307_102863611	3300009789	Serpentine Soil	MYMRITRGQPPAGQTDELIRKWEAFWPERMRAVPGFQHAHFGIDRATGATATVSVFSDKPDDALMERNLREFRDMLGRTDSGQGPEITSYEVVAEV*
Ga0126307_103302822	3300009789	Serpentine Soil	MFMRIVRAQPPQDQADELARKWEAFWPERLRAQPGFRHAHFGIDRATGAIAGVSLFDEQPDDVLFERLSREFRDTLGQTGLAQPPQSTVYEIAAEV*
Ga0126307_109027611	3300009789	Serpentine Soil	MYMRVVRAQPPEGQADEIARKWKTFFPERMRAQPGFRHAHFGIDRATGATAAVTVFDEKPDEAMLERILREFRDTLGQTGPAQDPEVTLYE
Ga0126307_110177281	3300009789	Serpentine Soil	MYMRIVRAQPPEGQADEIAQKWEAFWPEKMRSLPGFRHAHFGIDRATGATAAVTVYDDKPDDAMLERLMREFRDTLGQTRPAQAPEITGYEVVVEV*
Ga0126307_113994291	3300009789	Serpentine Soil	MYMRIVRGQPPAGQADALAQKWEAFWPERLRAQPGFRHAHFGIDRATGAIAGVTIFDDKPDDALFERLSREFRDTLGQASPAQPPESTVFEIASEV*
Ga0126307_116473492	3300009789	Serpentine Soil	DQGGIVMYMRIVRAQPAQGQADEVARKWKVFWPEKMRALPGFRHAHFGIDRATGAVAGVTVFDDKPDATVLDPLLDEFRATLGASNPAQPPEITVYEIVGEA*
Ga0126313_100677334	3300009840	Serpentine Soil	MYMRIVRAQPQGQADEIAQKWEAFWPEKMRSLPGFRHAHFGIDRATGATAAVTVYDDKPDDAMLERLMREFRDPLGQTRPAQAPEITLYEVVVEV*
Ga0126313_101908702	3300009840	Serpentine Soil	MYMRIVRAQPAEGQADELARKREAFWPERLRAQPGFRHAHFGIDRATGAIAGVTVFDEQPDDVLFERLSREFRDTLGQSGPAQPPQSTLYEIAAEL*
Ga0126313_102537113	3300009840	Serpentine Soil	MYMRIVRAQPPEGQADEIAQKWEAFWPERMRAQPGFRHSHLGIDWATGATAAVTIWDDKPDDALVERLMSEFRATLGMSGAQAPEATLYEVVVEV*
Ga0126313_102838142	3300009840	Serpentine Soil	MYMRIVRAQPPEGQADEIARKWEAFWPERLRAQPGFRHAHFGIDRATGAASAVTVFDDKPDEALFERLTREFRDTVGPAGSAPPPEATVYEIVAEA*
Ga0126313_103690342	3300009840	Serpentine Soil	VRAQKWEAFWPEKMRSLPGFRHAHFGIDRATGATAAVTVYDDKPDDAMLERLMREFRDTLGQTRPAQAPEITAYEVVVEV*
Ga0126313_105143151	3300009840	Serpentine Soil	DTGGFVVYMRIVRAQPPQGQADEVARKWEAFWPERLRDQPGFRHAHFGVDRATGAIAGVTVFDERPDDVLFERLAREFQDTLGQAGPAQGREATVFEIVAGA*
Ga0126313_105928292	3300009840	Serpentine Soil	MMYMRIVRAQPAEGQADELARRWAAFWPEKLRAQSGFQHAHFGIDRATGGISGVTVFADKPDDALFERLSAEFRATLGTSGPSQPPESTVYEIATEV*
Ga0126313_108971611	3300009840	Serpentine Soil	YMRIVRAQPPEGQADEIAQKWEAFWPEKMRAQPGFRQSHFGIDRATGATAAVTVWDDKPDDALVERLMSEFRATLGMSGAQAPEATLYEVVVEV*
Ga0126313_111704961	3300009840	Serpentine Soil	MYMRIVRVQPPAGQADALAQKWEAFWPERLRAQPGFRHAHFGIDRATGAIAGVTVFDDKPDDALFERLSREFRDTLGQASPAQPPESTVFEIASEV*
Ga0126305_101865063	3300010036	Serpentine Soil	MYMRIVRAQPPQGQADALAQKWEAFWPERLRAQPGFRHAHFGIDRATGATAVVTVLDNQPDDALFERLLGEFRETVEM
Ga0126305_102623022	3300010036	Serpentine Soil	MRIVRAQPPQGQADEVARKWEAFWPERLRDQPGFRHAHFGVDRATGAIAGVTVFDERPDDVLFERLAREFQDTLGQAGPAQGREATVFEIVAGA*
Ga0126304_101348621	3300010037	Serpentine Soil	MYMRIVRAQPQGQADEIAQKWEAFWPEKMRSLPGFRHAHFGIDRATGATAAVTVYDDKPDDAMLERLMREFRDTLGQTRPAQAPEITGYEVVVEV*
Ga0126304_101889503	3300010037	Serpentine Soil	GQADALAQKWEAFWPERLRAQPGFRHAHFGIDRATGAIAGVTVFDDKPDDALFERLSREFRDTLGQASPAQPPESSVFEIASEV*
Ga0126304_103101032	3300010037	Serpentine Soil	MYMRIVRAQPPQGQADALAQKWEAFWPERLRAQPGFRHAHFGINRATGAIAGVTVFDDKPDDALFERLSREFRDTLGQAGPAQPPESSVYEIASEV*
Ga0126304_104114252	3300010037	Serpentine Soil	MNSGSEPKPRTVRCAVAAAALVAVVDTGGFVVYMRIVRAQPPQGQADEVARKWEAFWPERLRDQPGFRHAHFGVDRATGAIAGVTVFDERPDDVLFERLAREFQDTLGQAGPAQGREATVFEIVAGA*
Ga0126304_109115551	3300010037	Serpentine Soil	MYMRITRGQPPAGQTDELIRKWEAFWPERMRTVPGFHHAHFGIDRATGATATVSVFSDKPDDALMERNLREFRDMLGRTDSGQGPEITSYEVVAEV*
Ga0126315_101889651	3300010038	Serpentine Soil	MYMRIVRAQPPEGQADEIAQKWEAFWPEKMRAQPGFRQSHFGIDRATGASAAVTIWDDKPDDALVERLMSEFRATLGMSGAQAPEATLYEVVVEV*
Ga0126315_102461791	3300010038	Serpentine Soil	MYMRITRGQPPAGQTDELIRKWEAFWPERMRAVPGFQHAHFGIDRATGATATVSVFSDKPDDALMERNLREFRDMLGRTDTGQGPEITSYEVVAEV*
Ga0126315_102633502	3300010038	Serpentine Soil	MYMRIVRAHPPEGQADEIAQKWEAFWPEKMRSLPGFRHAHFGIDRATGATAAVTVYDQKPDDALMEGFLREFRDMVGLGGSAQAPEITGYEVVVEV*
Ga0126315_104467732	3300010038	Serpentine Soil	MYMRIVRAQPPEGQADALAQKWQAFWPERLRAQPGFRHAHFGIDRATGAITGVTVFEEKPDDALFQRLSREFQATLGDSGPTQPPESTVFEIAAEV*
Ga0126315_104811072	3300010038	Serpentine Soil	MSQGGIAMYMRIVRAQPPEGQADELARKWEAFWPERLRAQPGFRHAHFGIDRATGAIAGVTIFDDKPDDALFQRLSGEFRDALGQTGPAQPPESTVYEIAAEV*
Ga0126315_108062821	3300010038	Serpentine Soil	MSQGGNAMYMRIVRAQPPEGQADAVARKWQAFWSERLPAQPGFRHAHFGIDRATGAIAGVTIFDDEPDDALFQRLSGEFRDTLGQTRPAQAPEITLYEV
Ga0126315_112688632	3300010038	Serpentine Soil	MRIVRAQPAQGQADEVARKWEAFWPEQLRAQPGFRHAHFGIDRATGAACGVTVFDDKPDEAVFERLTREFRDTLGPAGSAPPPEATVYEIVAEA*
Ga0126309_103995991	3300010039	Serpentine Soil	QPPEGQADEVARRWAEFWPERLRTQPGFHHAHFGIDRATGATTGVTVFEDKPDDAVFERLLREFRDMLGPASPAQPPEATVFEIAAEA*
Ga0126309_106337502	3300010039	Serpentine Soil	MFMRIVRAQPPEGQADELARKWEAFWPERLRAQPGFRHAHFGIDRATGAIAGVTVFDDRPDDVLFERLQREFRDTLGQTGPAQAPEATLYEIAAEV*
Ga0126309_107685552	3300010039	Serpentine Soil	MYMRIVRAQPPAGQADAVVRKWEAFWPERLRAQPGFRQAYFGVDRATGAVSGVTLFDNMPDDALLQQLLGEFQATLGESAPAQPPQATVYEIAAEA*
Ga0126308_102176941	3300010040	Serpentine Soil	MYMRIVRGQPPAGQADALAQKWEAFWPERLRAQPGFRHAHFGIDRATGAIAGVTVFDDKPDDALFERLSREFRDTLGQAGPAQPPESSVYEIASEV*
Ga0126308_102795042	3300010040	Serpentine Soil	MYMRIVRAQPPEGQADALAQKWQAFWPERLRAQPGFRHAHFGIDRATGAIAGVTLFDEKPDDALFQQLSGEFQATLGESGPTQLAQSTVFEVAAEI*
Ga0126308_103824601	3300010040	Serpentine Soil	MRIVRAQPPEGQADEIARKWEAFWPEKMRAQPGFRQSHFGIDRTTGETAAVTIWDDQPDDALIERLLSEFRATLGTSGAQAPEATLYEVVVEV*
Ga0126308_107468852	3300010040	Serpentine Soil	AQPPEGQADEVARRWAEFWPERLRTQPGFHHAHFGIDRATGATTGVTVFEDKPDDAVFERLLREFRDMLGPASPAQPPEATVFEIAAEA*
Ga0126308_109435461	3300010040	Serpentine Soil	MYMRIVRAQPPEGQADALAQKWQAFWPERLRAQPGFRHAHFGIDRATGAIAGVTVFDEKPDDALFQQLSGEFQATLGESGPTQLAQSTVF
Ga0126308_111788901	3300010040	Serpentine Soil	MYMRIVRAQPAQGQADEVARKWEAFWPERLRAQPGFRHAHFGIDRATGGACGVTVFDDKPDEAVFERLTREFRDTLGPAGSAPPPEATVYEIAAEA*
Ga0126308_113704581	3300010040	Serpentine Soil	MYMRITRGQPPAGQTDELIRKWEAFWPERMRAVPGFHHAHFGIDRATGATATVSVFSDKPDDALMERNLREFRDMLGRTDSGQGPEITSYEVVAEV*
Ga0126312_101670142	3300010041	Serpentine Soil	MYMRIVRGQPPAGQADALAQKWEAFWPERLRAQPGFRHAHFGIDRATGAIAGVTVFDDKPDDALFERLSREFRDTLGQASPAQPPESSVYEIASEV*
Ga0126312_101751162	3300010041	Serpentine Soil	MYMRIVRAQPQGQADEIAQKWEAFWPEKMRSLPGFRHAHFGIDRATGATAAVTVYDDKPDDAMLERLMREFRDTLGQTRPAQAPEITLYEVVVEV*
Ga0126312_102377622	3300010041	Serpentine Soil	MYMRIVRAQPPAGQADEVAKRWTAFWPEKLRAQPGFRHAHFGIDRATGGVAGVTVFDERPDDALFARLSAEFRASLGPAGLPHGPEIAVYEITGEA*
Ga0126312_102708401	3300010041	Serpentine Soil	MRIVRAQPPEGQADEIARKWEAFWPEKMRAQPGFRQSHFGIDRATGATAAVTVWDDKPDDALVERLMSEFRATLGMSGAQAPEATLYEVVVEV*
Ga0126312_114607891	3300010041	Serpentine Soil	MSMRITRGQPPEGQTDELIRKWKAFWPERMRAVPGFQHAHFGIDRATGATATVSVFSDKPDDALMERNLREFRDMLGRSDSGQGPEITSYEVVAEV*
Ga0126314_109154071	3300010042	Serpentine Soil	MYMRIVRVQPPDGQADEIAQKWEAFYPERMRAQPGFRHAHFGIDRATGATATVTVFDDRPDDVLLERLLREFRDMVGMSGSDQGPEITLYEVVAEV*
Ga0126314_111246472	3300010042	Serpentine Soil	VDEVARRWAEFWPERLRALPGFQHAHFGIDRATGTTSGVTIFADQPDDALFAQLLAEFREALGASGPSQPPEVTVYEIAAEA*
Ga0126314_113997921	3300010042	Serpentine Soil	MSMRITRGQPPEGQTDELIRKWKAFWPERMRAVPGFHHAHFGIDRATGATATVSVFSDKPDDALMERNLREFRDMLGRTDSGQGPEITSYEVVAEV*
Ga0126314_115129231	3300010042	Serpentine Soil	DELARKWEAFWPERLRAQPGFRHAHFGIDRATGAIAGVTVFDDQPDDVLFQRLSREFRDTLGQTGPAQAPESTVYEIVADV*
Ga0126310_102755361	3300010044	Serpentine Soil	MRIVRAQPPQGQADEVARKWEAFWPERLRDQPGFRHAHFGVDRATGAIAGVTVFDERPDDVLFERLSREFQDTLGQAGPAQGREATVFEIVAGA*
Ga0126310_103155121	3300010044	Serpentine Soil	QAVTSSGGIVMDMRIVRAQPPLGQADDGARKWEAFWSERLRAQPGFRHAHFGIERATGAIAGVSVFDEKPDNALFERLSGEFRAMLGQSGPPQRRSPLSMRSLPAPER*
Ga0126310_105722751	3300010044	Serpentine Soil	MYMRITRGQPPEGQTDELIRKWKAFWPERMRAVPGFQHAHFGIDRATGATATVSVFSDKPDDALMERNLREFRDMLGRSDSGQGPEITSYEVVAEV*
Ga0126310_106190931	3300010044	Serpentine Soil	MYMRIVRAQPPAGQADALAQKWEAFWPERLRAQPGFRHAHFGIDRATGAIAGVTIFDDKPDDALFERLSREFRDTLGQAGP
Ga0126310_111749911	3300010044	Serpentine Soil	MYMRIVRAQPPQGQADALAQKWEAFWPERLRAQPGFRHAHFGIDRATGAIAGVTVFDDKPDDALFERLSREFRDTLGQAGPAQPPESTVFEIASEV*
Ga0126310_113262722	3300010044	Serpentine Soil	MYMRIVRAQPPEGQADEIAQKWEAFWPERMRAQPGFRQSHFGIDRATGATAAVTIWDDKPDDALIERLMSEFRATLGMSGGQAPEATLYEVVVEV*
Ga0126311_102118332	3300010045	Serpentine Soil	MYMRITRAQSPAGQTDELIRKWKAFWPERMRAVPGFHHAHFGIDRATGATATVSVFSDKPDDALMERNLREFRDMLGRTDSGQGPEITSYEVVAEV*
Ga0126311_103442331	3300010045	Serpentine Soil	MYMRIVRAQPPEGQADEIARKWAAFWPERMRAQPGFRHSHLGIDRATGATAAVTIWDDKPDDALIERLLSEFRATLGMSGAQAPEAALYEVVVEF*
Ga0126311_104683231	3300010045	Serpentine Soil	MRIVRAQPPQGQADEVARKWEAFWPERLRDQPGFSHAHFGVDRATGAIAGVTVFDEMPDDVLFERLSREFQDTLGQAGPAQGREATVFEIVAGA*
Ga0126311_104714463	3300010045	Serpentine Soil	MYMRIVRAQPPEGQADAVVRKWEAFWPERLRAQPGFRHAYFGVDRATGAVSGVTLFDNMPDDALLQQLLGEFQATLGESAPAQPPQATVYEIAAEA*
Ga0126311_108684621	3300010045	Serpentine Soil	MYMRIVRAQPAEGQADELARKWEAFWPERLRTQPGFRHAHFGIDRATGAIAGVTIFDNQPDDVLFERLQREFRDTLGQSGPAQPPQSISTRSPPS
Ga0126311_113092741	3300010045	Serpentine Soil	MYMRIVRVQPPEGQADALAQKWEAFWPERLRAQPGFRHAHFGIDRATGAISGVSVFDGEPDDVLFQRLSREFRDTLGQAGPAQPPESTVYEIAVEV*
Ga0126311_113768171	3300010045	Serpentine Soil	MYMRIVRAQPAQGQADEVARKWEAFWPEKMKAQPGFRHAYFGIDRASGAVAGVTVYDEKPDAAVLNPLLDEFRASLGASNPAQPPEITVYEIAAEA*
Ga0126311_115275331	3300010045	Serpentine Soil	MYMRIVRAQPQGQADEIAQKWEAFWPEKMRSLPGFRHAHFGIDRATGATAAVTVYDDKPDDAMLERLMREFRDTPGQTRPAPAPEITLYGVVGEV*
Ga0126318_106211482	3300010152	Soil	MYMRIVRAQPPVGQADALADRWATFWPERLRTLPGFRHAHFGVDRQTGAIAGVTVFDERPDDATFERLSSEFQATLGDAQPAQPRQMTVYEITSDVA*
Ga0126306_101476341	3300010166	Serpentine Soil	MYMRIVRGQPPQGQADALAQKWEAFWPERLRAQPGFRHAHFGIDRATGAIAGVTVFDDKPDDALFERLSREFRDTLGQASPAQSPESTVFEIASEV*
Ga0126306_104109441	3300010166	Serpentine Soil	MYMRIVRAQPAQGQADEVARKWEAFWPEKMRAQPGFRHAYFGIDRATGAVAGVTVFDEKPDAAVLNPLLDEFRATLGAANPAQPPEITVYEIAAEA*
Ga0126306_105361501	3300010166	Serpentine Soil	MYMRIVRAQPPEGQADEIARKWKAFFPERMRAQPGFRHAHFGIDRATGATAAVTVFDEKPDNARLERLLGEFRDTLGPAGPAQAPEVTLYEVVAEV*
Ga0126306_107793332	3300010166	Serpentine Soil	MMYMRIVRAQPAQGQADEVARRWAEFWPERLRAQPGFRHAHFGIDRATGATSGVTVFDDKPDDAVFERLLREFRDTLGPSSPAQPPQATIYEIVAEA*
Ga0126306_109308991	3300010166	Serpentine Soil	MYMRIVRAHPPEGQADEIAQKWEAFWPEKMRSLPGFRHAHLGIDRATGATAAVTVYDQKPDDALMEGFLREFRDMVGLGGSAQAPEITGYEVVVEV*
Ga0136620_101288671	3300012186	Polar Desert Sand	RAQPAAGQAEEIGRQWATFWPERLRAQPGFRHAHFGIDRTGGTVAGVMVFDEQPDAAVFERLMGEFRALLSGAAPAQPPDVTVYEIVAEA*
Ga0136618_100936792	3300012188	Polar Desert Sand	MYMRIVRAQPPQDQADEVARRWTAFWPEKLRTQPGFRHAHFGIDRATGAIAGVTVFDERPDDALFERLSGEFRAILEDIASAQMPNITVYEIAAEA*
Ga0150985_1160254661	3300012212	Avena Fatua Rhizosphere	MYMRIVRAQPPQGQADEVARKWEAFWPERLRDQPGFRHAHFGIDRATGGISGVSVFDDQPDDALFERLSREFADTLGQAGPAESR
Ga0150985_1230542771	3300012212	Avena Fatua Rhizosphere	MYMRIVRAQPPAGQADEIAQKWGAFWPERMRAQPGFRQSHFGIDRATGETAAVTIWDDQPDDALIERLLSEFRATLGMRGAQAPEATLYEVVVEV*
Ga0150984_1063746222	3300012469	Avena Fatua Rhizosphere	MRIVRAQPPEGQADELARKWIAFWPERLRAQPGFRHAHFGIDRATGAIAGVTVFDDRPDDVLFERLSREFRDTLGQTGPAQAPESTVYEIAAEV*
Ga0150984_1184204981	3300012469	Avena Fatua Rhizosphere	MRIVRAQPPAGQADEIAQKWESFWPERMRAQPGFRQSHFGIDRATGETAAVTIWDDQPDDALIERLLSEFRATLGMSGAQAPEATLYEVVVEV*
Ga0150984_1227396412	3300012469	Avena Fatua Rhizosphere	MYMRIVRAQPPAGQADAIAEKWKAFYPERMRAQPGFRHSHFGIDRATGATATVAVFDDKPDEALFERLLREFRDTLGQSGPAQDPEVTLYEVVAEA*
Ga0136633_12447091	3300012527	Polar Desert Sand	MYMRIVRARPPEGADADEIGRRWAAFWPERLRKQPGFRHAHFGVDRATGTINGVQVFDQKPDDQVFKQLSEEFR
Ga0136615_100770823	3300012678	Polar Desert Sand	MYMRIVRAQPPQDQADEVARRWTAFWPEKLRTQPGFRHAHFGIDRATGAIAGVTVFDEQPDDALFERLSGEFRAILEDIASAQMPNITVYEIAAEA*
Ga0136612_100105458	3300012680	Polar Desert Sand	MYMRIVRAQSPQGQTDEVARRWAAFWPERLRAQPGFRHAHLGIDRATGAITGVSVFDDKPDDALFERLSGEFQATLGESGPAQPPESTVYEIAAEA*
Ga0136612_100721582	3300012680	Polar Desert Sand	MYMRIVRVTPPPGQAEAMGQRWAAFWPERLRSQPGFRHAHFGIDRATGAIAGVTVFDEPPDEALFERLSGEFQATLGETRPGQAREATVYEIVAEA*
Ga0136612_101236001	3300012680	Polar Desert Sand	MYMRIVRAEPPAGQADEVAKRWTAFWPDKLRAQPGFRHAHFGIDRATGGIAGVTVFDQQPDDALFERLSAEFRASLGPASSPQALEVTLYEITGEA*
Ga0136612_102544622	3300012680	Polar Desert Sand	YMRIVRARPPEGQADEIAKRWAAFWPDKLREQPGFRHAHFGIDRATGAVSGVTVFDEQPDDALFETTGRDGRYAPFPFA*
Ga0136614_100598471	3300012684	Polar Desert Sand	MYMRIVQAQSPQGQADEVARKWEAFWPEKMRAQPGFRHAHFGIDRATGAVAGVSVFDDKPDDALFERLSGEFRETLGEIGPSQPPVSAVYEIAAEV*
Ga0136614_105447391	3300012684	Polar Desert Sand	MYMRIVRAQPPHGQADEVARKWEAFWPERLRAQPGFRHAHFGVDRATGAIAGVTVFDEMPDEGLFEQLSREFQDTLSQAA
Ga0136614_106344222	3300012684	Polar Desert Sand	MYMRIVRARPPEGADADEIGRRWAAFWPERLRKQPGFRHAHFGVDRATGTINGVQVFDQKPDDQVFKQLSEEFRSGLGTAAPAQPPESTVFEIIAEA*
Ga0132256_1025430351	3300015372	Arabidopsis Rhizosphere	MYMRVVRAQPPEGQADEIAQKWQAFWPERMRAQPGFRQAHFGIDRATGATAAVTVWDEKPDDARIEQLMREFRE
Ga0183260_101001041	3300017787	Polar Desert Sand	MYMRIVRVTPPPGQAEAMGQRWAAFWPERLRSQPGFRHAHFGIDRATGAIAGVTVFDEPPDEALFERLSGEFQATLGETRPGQAREATVYEIVAEA
Ga0183260_101024463	3300017787	Polar Desert Sand	MYMRIVRAQPPQDQADEVARRWTAFWPEKLRTQPGFRHAHFGIDRATGAIAGVTVFDEQPDDALFERLSGEFRAILEDIGPAQMPNVTVYEIAAEA
Ga0136617_100775086	3300017789	Polar Desert Sand	MYMRIVRAQPPHGQADEVARKWEAFWPERLRAQPGFRHAHFGVDRATGAIAGVTVFDEMPDEGLFEQLSREFQDTLSQAAPAQGREATVYEIVADA
Ga0224712_102550342	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MYMRIVRAQPPAGQADALADRWAAFWPERLRTLPGFRHAHFGVDRQTGAIAGVTVFDQRPDDATFERLSSEFQATLGDAQPAQPRQMTVYEITSDVS
Ga0209382_115070341	3300027909	Populus Rhizosphere	MYLRIVRGQPPQGQADEVARKWEAFWPEKMRAQPGFRRAYFGIDRDTGAIVGVTVYDEKPDAAVLNPLLDEFRATLGASNPAQPPEVTVYEIAAEA
Ga0209382_115469501	3300027909	Populus Rhizosphere	MYMRIVRAQPPQGQADEVARRWAEFWPERLRAQPGFQHAHFGIDRVTGATSGVTIFDERPDDVLFERLLREFRDTLGASNPAQPPEVTVFEIAAEA
Ga0307276_100841551	3300028705	Soil	MYMRIVRAQPPEGQADELARKWNAFWPERLRDQPGFRHAHFGIDRATGAIAGVTVFDDRPDDVLFERLQREFRDTLGQTAPAQPPQSTL
Ga0307405_103108771	3300031731	Rhizosphere	VYMRIVRAQPPEGQADEIAQKWEAFWPERMRAQPGFRQSHFGIDRATGATAAVTIWDDQPDDALIERLLREFRATLGMSGAQAPEATLYEVVVEV
Ga0307410_105739022	3300031852	Rhizosphere	MYMRIVRAQPPEDQDDALAQKWQAFWPERLRAQPGFRHAHFGIDRATGAIAGVTIFDDQPDDALFQRLSREFRDTLGSSGPAQQPESTLYEITAEI
Ga0307407_116829731	3300031903	Rhizosphere	MYMRIVRAQPPEGQADEIAQKWEAFWPERMRAQPGFRQSHFGIDRATGATAAVTIWDDQPDDALIERLLREFRATLGMSGAQAPEATLYEVVVEV
Ga0307409_1016120791	3300031995	Rhizosphere	MYMRIVRAQPPEDQDDALAQKWQAFWPERLRAQPGFRHAHFGIDRATGAIAGVTIFDDQPDDALFQRLSREFRDTLGSSGPAQQPESTLYEITAEV
Ga0308176_109409142	3300031996	Soil	MYMRIVRAQPPEGEADSLAQKWQAFWPERLRAQPGFRHAHFGIDRATGAIAGVTVFDNEPDDALFERLSGEF
Ga0307416_1022871111	3300032002	Rhizosphere	MYMRIVRAQPPEGQADEIAQKWEAFWPEKMRSLPGFRHAHFGIDRATGATAAVTVYDDKPDDAMLERLMREFRDTLGQTRPAQAPEV
Ga0307411_101706643	3300032005	Rhizosphere	MYMRIVRAQPPEGQADEIAQKWEAFWPEKMRAQSGFRQSHFGIDRATGATAAVTIWDDQPDDALIERLLREFRATLGMSGAQAPEATLYEVVVEV
Ga0307411_104064592	3300032005	Rhizosphere	MYMRIVRAQPPEGQADALAQKWQAFWPERLRAQPGFRHAHFGIDRATGAIAGVTIFDDQPDDALFQRLSREFRDTLGSSGPAQQPESTLYEITAEV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085298

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences