Metagenome / Metatranscriptome Family F085352

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F085352
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	48 residues
Representative Sequence	EFTSVVEQATGRKVRVFLSETNIDQDVSVETFLLADERTDMTDFEDA
Number of Associated Samples	73
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	12.61 %
% of genes near scaffold ends (potentially truncated)	83.78 %
% of genes from short scaffolds (< 2000 bps)	94.59 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (62.162 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.820 % of family members)
Environment Ontology (ENVO)	Unclassified (31.532 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.045 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.00% β-sheet: 25.33% Coil/Unstructured: 66.67%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF10057	MpsC	25.23
PF13581	HATPase_c_2	8.11
PF13466	STAS_2	4.50
PF00196	GerE	1.80
PF02518	HATPase_c	1.80
PF00072	Response_reg	0.90
PF13191	AAA_16	0.90
PF07498	Rho_N	0.90
PF13576	Pentapeptide_3	0.90
PF00282	Pyridoxal_deC	0.90
PF07228	SpoIIE	0.90
PF04542	Sigma70_r2	0.90
PF07992	Pyr_redox_2	0.90
PF02566	OsmC	0.90
PF02371	Transposase_20	0.90
PF03098	An_peroxidase	0.90
PF05221	AdoHcyase	0.90
PF00857	Isochorismatase	0.90
PF06463	Mob_synth_C	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	0.90
COG0499	S-adenosylhomocysteine hydrolase	Coenzyme transport and metabolism [H]	0.90
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.90
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.90
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.90
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.90
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.90
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.90
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.90
COG2896	GTP 3',8-cyclase (molybdenum cofactor biosynthesis protein MoaA)	Coenzyme transport and metabolism [H]	0.90
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.90
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.16 %
Unclassified	root	N/A	37.84 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.16 %
Unclassified	root	N/A	37.84 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.16 %
Unclassified	root	N/A	37.84 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	49.55 %
Unclassified	root	N/A	37.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.90 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	48.65 %
Unclassified	root	N/A	37.84 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.90 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.84 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	27.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6.31 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.84 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	26.13 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	3.60 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.90 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	0.90 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.84 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	7.21 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.60 %
Patulibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae	2.70 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	2.70 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.90 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	0.90 %
Actinopolymorphaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.84 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	6.31 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.60 %
Patulibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter	2.70 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2.70 %
Solirubrobacterales bacterium 70-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	0.90 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	0.90 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.90 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.84 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	6.31 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.60 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2.70 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.90 %
Patulibacter americanus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → Patulibacter americanus	0.90 %
Patulibacter minatonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → Patulibacter minatonensis	0.90 %
Solirubrobacterales bacterium 70-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	0.90 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.90 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908044\|A5_c1_ConsensusfromContig76305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	782	Open in IMG/M
3300001686\|C688J18823_10199540	All Organisms → cellular organisms → Bacteria	1350	Open in IMG/M
3300002568\|C688J35102_117723417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	501	Open in IMG/M
3300002568\|C688J35102_117995710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → Patulibacter minatonensis	521	Open in IMG/M
3300002568\|C688J35102_119077861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	635	Open in IMG/M
3300002568\|C688J35102_119608150	Not Available	730	Open in IMG/M
3300002568\|C688J35102_120389658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1033	Open in IMG/M
3300004081\|Ga0063454_102011308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → Patulibacter americanus	511	Open in IMG/M
3300004153\|Ga0063455_100357234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	837	Open in IMG/M
3300004153\|Ga0063455_101478083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	529	Open in IMG/M
3300004153\|Ga0063455_101496966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	526	Open in IMG/M
3300005329\|Ga0070683_102434157	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300005347\|Ga0070668_101970255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	538	Open in IMG/M
3300005354\|Ga0070675_102062617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter	526	Open in IMG/M
3300005459\|Ga0068867_100799608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	841	Open in IMG/M
3300005577\|Ga0068857_101201953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	734	Open in IMG/M
3300005616\|Ga0068852_101634662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	667	Open in IMG/M
3300005616\|Ga0068852_102292462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	561	Open in IMG/M
3300006031\|Ga0066651_10577489	Not Available	597	Open in IMG/M
3300006046\|Ga0066652_100744839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	935	Open in IMG/M
3300006804\|Ga0079221_11757591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	507	Open in IMG/M
3300006844\|Ga0075428_100805487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	998	Open in IMG/M
3300006880\|Ga0075429_100229742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1625	Open in IMG/M
3300006894\|Ga0079215_10315612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	872	Open in IMG/M
3300006954\|Ga0079219_10369330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	932	Open in IMG/M
3300009012\|Ga0066710_103328372	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300009094\|Ga0111539_10199957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2330	Open in IMG/M
3300009147\|Ga0114129_12606345	Not Available	603	Open in IMG/M
3300009156\|Ga0111538_11606222	Not Available	819	Open in IMG/M
3300009551\|Ga0105238_12299711	Not Available	574	Open in IMG/M
3300009789\|Ga0126307_10071090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2739	Open in IMG/M
3300009789\|Ga0126307_10168398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1756	Open in IMG/M
3300009840\|Ga0126313_10004672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	8099	Open in IMG/M
3300009840\|Ga0126313_11765770	Not Available	517	Open in IMG/M
3300010038\|Ga0126315_10663122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	678	Open in IMG/M
3300010038\|Ga0126315_10758664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	637	Open in IMG/M
3300010040\|Ga0126308_10474238	Not Available	843	Open in IMG/M
3300010040\|Ga0126308_10942764	Not Available	603	Open in IMG/M
3300010041\|Ga0126312_10209687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1363	Open in IMG/M
3300010042\|Ga0126314_10948408	Not Available	637	Open in IMG/M
3300010044\|Ga0126310_10260640	Not Available	1174	Open in IMG/M
3300010044\|Ga0126310_10604359	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300010044\|Ga0126310_11425846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	565	Open in IMG/M
3300010045\|Ga0126311_10476921	Not Available	972	Open in IMG/M
3300010045\|Ga0126311_10508563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	943	Open in IMG/M
3300010045\|Ga0126311_10981463	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300010045\|Ga0126311_11439983	Not Available	576	Open in IMG/M
3300010100\|Ga0127440_1111835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	504	Open in IMG/M
3300010166\|Ga0126306_10366611	Not Available	1121	Open in IMG/M
3300010166\|Ga0126306_10532128	Not Available	932	Open in IMG/M
3300010166\|Ga0126306_11671951	Not Available	531	Open in IMG/M
3300010396\|Ga0134126_13044687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	506	Open in IMG/M
3300011332\|Ga0126317_10610970	Not Available	614	Open in IMG/M
3300012212\|Ga0150985_100421609	Not Available	559	Open in IMG/M
3300012212\|Ga0150985_100548052	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300012212\|Ga0150985_106786711	Not Available	560	Open in IMG/M
3300012212\|Ga0150985_107239167	Not Available	740	Open in IMG/M
3300012212\|Ga0150985_111310305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	835	Open in IMG/M
3300012212\|Ga0150985_112794933	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300012212\|Ga0150985_119379537	Not Available	638	Open in IMG/M
3300012212\|Ga0150985_120854397	Not Available	547	Open in IMG/M
3300012285\|Ga0137370_10650462	Not Available	654	Open in IMG/M
3300012469\|Ga0150984_100757610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	818	Open in IMG/M
3300012469\|Ga0150984_109178599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	504	Open in IMG/M
3300012469\|Ga0150984_110396019	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300012469\|Ga0150984_111382441	Not Available	719	Open in IMG/M
3300012469\|Ga0150984_115561223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	607	Open in IMG/M
3300012897\|Ga0157285_10358678	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300012906\|Ga0157295_10393824	Not Available	515	Open in IMG/M
3300012987\|Ga0164307_10306069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1135	Open in IMG/M
3300013307\|Ga0157372_12161091	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300013308\|Ga0157375_12353384	Not Available	635	Open in IMG/M
3300014268\|Ga0075309_1186234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	544	Open in IMG/M
3300018422\|Ga0190265_10669909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1159	Open in IMG/M
3300018422\|Ga0190265_12541353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	610	Open in IMG/M
3300018432\|Ga0190275_12161360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	635	Open in IMG/M
3300018468\|Ga0066662_10003088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7956	Open in IMG/M
3300018469\|Ga0190270_10116652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2088	Open in IMG/M
3300018469\|Ga0190270_11176340	Not Available	804	Open in IMG/M
3300018469\|Ga0190270_11809945	Not Available	666	Open in IMG/M
3300018469\|Ga0190270_11988443	Not Available	639	Open in IMG/M
3300018469\|Ga0190270_12212090	Not Available	610	Open in IMG/M
3300018476\|Ga0190274_12143797	Not Available	656	Open in IMG/M
3300018481\|Ga0190271_10935540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	991	Open in IMG/M
3300018481\|Ga0190271_12737648	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300025909\|Ga0207705_11321748	Not Available	550	Open in IMG/M
3300025927\|Ga0207687_11964795	Not Available	500	Open in IMG/M
3300025932\|Ga0207690_11875606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	500	Open in IMG/M
3300025944\|Ga0207661_11817194	Not Available	555	Open in IMG/M
3300026075\|Ga0207708_11030270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	716	Open in IMG/M
3300026078\|Ga0207702_10581657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1098	Open in IMG/M
3300026118\|Ga0207675_100902164	Not Available	900	Open in IMG/M
3300026118\|Ga0207675_102684116	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	507	Open in IMG/M
3300026142\|Ga0207698_10610284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1076	Open in IMG/M
3300028380\|Ga0268265_10902848	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	868	Open in IMG/M
3300028721\|Ga0307315_10187570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	638	Open in IMG/M
3300028784\|Ga0307282_10335751	Not Available	730	Open in IMG/M
3300028875\|Ga0307289_10318496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	640	Open in IMG/M
3300028881\|Ga0307277_10158999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	982	Open in IMG/M
3300028884\|Ga0307308_10369319	Not Available	687	Open in IMG/M
3300028884\|Ga0307308_10579228	All Organisms → cellular organisms → Bacteria → Terrabacteria group	538	Open in IMG/M
3300031091\|Ga0308201_10289829	Not Available	579	Open in IMG/M
3300031421\|Ga0308194_10161915	Not Available	698	Open in IMG/M
3300031731\|Ga0307405_11400188	Not Available	611	Open in IMG/M
3300031824\|Ga0307413_10051500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2481	Open in IMG/M
3300031901\|Ga0307406_11816401	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300031938\|Ga0308175_100946750	Not Available	950	Open in IMG/M
3300031996\|Ga0308176_11097604	Not Available	842	Open in IMG/M
3300032126\|Ga0307415_100144273	Not Available	1823	Open in IMG/M
3300032126\|Ga0307415_100582432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	993	Open in IMG/M
3300034384\|Ga0372946_0524451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	575	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.96%
Host-Associated	Host-Associated	36.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.06%
Plants	Host-Associated → Plants	36.04%
Aquatic	Environmental → Aquatic	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.06%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.72%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.32%
Freshwater	Environmental → Aquatic → Freshwater	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.61%
Loam	Environmental → Terrestrial → Soil → Loam	11.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.11%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.21%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.61%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	9.01%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.21%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.70%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.90%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.82%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	18.02%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	9.01%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	7.21%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.50%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.50%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	4.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.80%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.80%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.90%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.90%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908044	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010100	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014268	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A5_c1_00436280	2124908044	Soil	MADEFKSIVEQGTGRVVRAFLSETDVDADVSVEFFLLGDERTDMVDFELDAPPEP
C688J18823_101995404	3300001686	Soil	VRAFLSETDLEQDVSVKTFLLADKRTDMTGLEDA*
C688J35102_1177234172	3300002568	Soil	RFQQQMADAFTSVVEQATGRKVRAFLSDTDIAHDVSVETFLLAGERTDMAGFERADERR*
C688J35102_1179957101	3300002568	Soil	AEAFTSVIEQATGRRVRAFLSDTDITQDVSVETLLLADDRTDMSSFEQT*
C688J35102_1190778612	3300002568	Soil	IRRRFQQTMAEEFKSIVEQATGRVVRAFLSETSVEADVSVEFFLLGEARTDMLDFETKG*
C688J35102_1196081501	3300002568	Soil	RFQQQMADSFTSVVEQATGRRVRAFLSETDIDQDVSVETFLLAEDRTDMTAFEDD*
C688J35102_1203896581	3300002568	Soil	IRRRFQQQMADSFIGVVEQATGRRVRAFLSETDIDQDVSVETFLLAEDRTDMAGFEDG*
Ga0063454_1020113081	3300004081	Soil	FTSVVEQATGRKVRVFLSETNVDSDVSVETFLLADERTDMTDFEDG*
Ga0063455_1003572342	3300004153	Soil	MAESFTSVVEQATGRRVKVFLSDTDIEQDVSVETFLLAEERTDMTGFEDGESAGQ*
Ga0063455_1014780831	3300004153	Soil	RFQQQMADAFTSVVEQATGRKVRAFLSDTDIAHDISVETFLLAGERTDMGGFEGG*
Ga0063455_1014969662	3300004153	Soil	IADEFTSVVEQATGRSVRAFLSETNLEADISVELFLLQDERAATEEFEPDSE*
Ga0070683_1024341571	3300005329	Corn Rhizosphere	QQQMADSFTSVVEQATGRKVRVFLSETDIDSDVSVETFLLAEQRTDMTGFEEG*
Ga0070668_1019702551	3300005347	Switchgrass Rhizosphere	EFVSVVEQATGRRVRAFLSETDIAADVSVETFLLAEDRTDMSGFEGA*
Ga0070675_1020626172	3300005354	Miscanthus Rhizosphere	FQQQMAESFTSVVEQATGRKVRVFLSETNIDQDVSVETFLLADGRTDMTDFEDA*
Ga0068867_1007996081	3300005459	Miscanthus Rhizosphere	RRFQQQMADNFTSVVEQATGRKVRVFLSETNVEHDVSVETFLLADERTDMAAFEDE*
Ga0068857_1012019531	3300005577	Corn Rhizosphere	EQATGRKVRVFLSDTDIEQDVSVETFLLAEERTDMTGFEEA*
Ga0068852_1016346621	3300005616	Corn Rhizosphere	EQATGRKVKVFLSETDIEHDVSVETFLLAEERTDMTEFEDG*
Ga0068852_1022924621	3300005616	Corn Rhizosphere	RRFQQQMAESFTSVVEQATGRRVRAFLSDTDIAQDVSVETFLLADERTDMTGFEGA*
Ga0066651_105774892	3300006031	Soil	DEFKSIVEQATGRVVRAFLSETNLEADVSVEFFLLGEARTDMHGFEPGPSLPG*
Ga0066652_1007448393	3300006046	Soil	FTSIVEQATGRAVRAFLSETNIEHDLSVETFLLADDRTDMTDFEGA*
Ga0079221_117575912	3300006804	Agricultural Soil	EDFTSVVEQATGRRVRTFLSETDIAADVSVEIFLLADERTDMTGFEEA*
Ga0075428_1008054871	3300006844	Populus Rhizosphere	VEQVTGRKVRAFLSETSIEQDVSVETFLLAGERTDMGYFEEG*
Ga0075429_1002297421	3300006880	Populus Rhizosphere	VEQATGRRVRTFLSETDIDQDVSVETFLLADDRTDMTAFEDA*
Ga0079215_103156121	3300006894	Agricultural Soil	ESFTNVVEEATGRKVRVFLSETDIEHDVSVETFLLAEERTDMTSFEEA*
Ga0079219_103693301	3300006954	Agricultural Soil	TSVVEQATGRRVRAFLSETDIAADVSVEIFLLADERTDMTGFEEA*
Ga0066710_1033283721	3300009012	Grasslands Soil	GGGRATGGKVRAVLSEPDIEHGVSVETFLLADERTDMTGFEEA
Ga0111539_101999573	3300009094	Populus Rhizosphere	VEQATGRRVRAFLSETDIETDVSVETFLLAEDRTDMAGFEEA*
Ga0114129_126063451	3300009147	Populus Rhizosphere	VVEQATGRKVKVFLSETDIERDVSVETFLLAEERTDMSGFEEA*
Ga0111538_116062223	3300009156	Populus Rhizosphere	VRTFLSETDIDSDVSVETFLLADERTDMAGFEEA*
Ga0105238_122997111	3300009551	Corn Rhizosphere	RFQQQMAESFTSVVEQATGRKVRVFLSDTDIEQDVSVETFLLAEERTDMTGFEEA*
Ga0126307_100710902	3300009789	Serpentine Soil	VEQATGRKVRVFLSETNVDLDVSAETFLLADERTDMTDCEDA*
Ga0126307_101683981	3300009789	Serpentine Soil	VRAFLSETNVDLDVSVETFLLADGRTDMTGFEAA*
Ga0126313_100046724	3300009840	Serpentine Soil	VSVFLSETDIDNDVSVEMFLLAEERTDMTGYEEA*
Ga0126313_117657701	3300009840	Serpentine Soil	MAQQFRSVVEQATGRRVKTFLSESTVDDDVAVEIFLLGEARTDMSGFEGA*
Ga0126315_106631222	3300010038	Serpentine Soil	GRKVRTFLSETDIETDVSVETFLLADDRTDMSRFEDE*
Ga0126315_107586641	3300010038	Serpentine Soil	RRFQQQMAESFISVVEQATGRKVRTFLSETDIENDVSVETFLLAGGRTDMTNFEDA*
Ga0126308_104742382	3300010040	Serpentine Soil	MAESFRGVVEQATGRKVRVLLPETNVEQDVSVETFLLADERTDMTSFEDA*
Ga0126308_109427641	3300010040	Serpentine Soil	QMADDFTSVVEQATGRKVRVFLSETNIDQDVSVETFLLADERTDMTDFENA*
Ga0126312_102096873	3300010041	Serpentine Soil	MADDFTSVVEQATGRKVRAFLSETNVDLDVSVETFLLADGRTDMTGFEAA*
Ga0126314_109484081	3300010042	Serpentine Soil	QQMADDFTSVVEQATGRKVRVFLSETNIDLDVSVETFLLADERTDMTDFENA*
Ga0126310_102606403	3300010044	Serpentine Soil	QATGRKVRVFLSETNIEHDVSVETFLLADERTDMTGFEGA*
Ga0126310_106043593	3300010044	Serpentine Soil	VEQATGRRVRAFLSETDLENDVAVELFLLAEDRTDMSSFEARKDQ*
Ga0126310_114258462	3300010044	Serpentine Soil	TAIVEQATERKVRAFLSETHLEEDIAVEIFLLADERTDMSGFEEGAKQQRAS*
Ga0126311_104769211	3300010045	Serpentine Soil	TGRKVRVFLSETDVDSDVSVERFLLAEERTDMTSFEET*
Ga0126311_105085631	3300010045	Serpentine Soil	QATGRRVRAFLSETDLDNDVSVEIFLLAQDRTDMSGFEPRKEQ*
Ga0126311_109814631	3300010045	Serpentine Soil	IRRRFQQQTADDFTSVVEQATGRKVRVFLSETNIDLDVSVETFLLADERTDMTDFENA*
Ga0126311_114399831	3300010045	Serpentine Soil	DDFTSVVEQATGRKVRVFLSEKNVDLDVSVETFLLADERTDMTDFEDA*
Ga0127440_11118352	3300010100	Grasslands Soil	RRFQQEMADEFESIVEQATGRSVRAFLSETNLDADLSVELFLLGDARTDMAEFEPS*
Ga0126306_103666111	3300010166	Serpentine Soil	IRRRFQQQMADDFTSVVEQATGRKVRAFLSETNVDLDVSVETFLLADGRTDMTGFEAA*
Ga0126306_105321281	3300010166	Serpentine Soil	MTEGRQKPRAFLSETDIEQDVSVETFLLAEERTDMTGFEDA
Ga0126306_116719512	3300010166	Serpentine Soil	VVEQATGRKVRAFLSETNLEADVAVEIFLLGDERTDASSSAP*
Ga0134126_130446873	3300010396	Terrestrial Soil	DEFKGIVEQATGRVVRAFLSETNLEADVAVEFFLLGESRTDMQDFEPKQAP*
Ga0126317_106109701	3300011332	Soil	RRFQQQMAESFTGIVEQATGRKVRVFLSETDIEQDVSVETFLLAEERTDMTGFEEA*
Ga0150985_1004216092	3300012212	Avena Fatua Rhizosphere	EQATGRKVRVFLSETNIEQDVSVETFLLADERTDMTDFETG*
Ga0150985_1005480521	3300012212	Avena Fatua Rhizosphere	ATGRKVRAFLSDTDIAQDISVETFLLAGERTDMDGFEEPEEGR*
Ga0150985_1067867112	3300012212	Avena Fatua Rhizosphere	FQQQMADEFTSVVEQATGRKVRVFLSETNIEQDVSVETFLLADERTDMTDFENG*
Ga0150985_1072391671	3300012212	Avena Fatua Rhizosphere	TSVVEQATGRKVRVFLSETNIDADVSVETFLLADERTDMTGFEDG*
Ga0150985_1113103051	3300012212	Avena Fatua Rhizosphere	MADSFTSVVEQATGRKVRVFLSETDVDQDVSVELFLLADERTDMTDFEDS*
Ga0150985_1127949332	3300012212	Avena Fatua Rhizosphere	TGRKVRTFLSETDIAQDVSVETFLLADGRTDMTGFEDA*
Ga0150985_1193795371	3300012212	Avena Fatua Rhizosphere	VEQATGRVVRAFLSETDVDPDVSVEFFLLGPDRTDMAEFERPT*
Ga0150985_1208543972	3300012212	Avena Fatua Rhizosphere	MADEFKSIVEQATGRVVRAFVSDTSVEADVSIEFFLLSETRTDMLGFDPEA*
Ga0137370_106504621	3300012285	Vadose Zone Soil	MADEFKSIVEQATGRVVRAFLSETNLEADVSVEFFLLGEARTDMHGFEPGPSRPG*
Ga0150984_1007576102	3300012469	Avena Fatua Rhizosphere	MADSFIGIVEQATGRRVRVFLSETDIDQDVSVETFLLADDRTDMADFEEA*
Ga0150984_1091785991	3300012469	Avena Fatua Rhizosphere	MADDFTSVVEQATGRKVRAFLSETNIEQDVSVETFLLADERTDMAGFEAD*
Ga0150984_1103960192	3300012469	Avena Fatua Rhizosphere	MADSFTSVVEQATGRKVRTFLPETDIAQDVSVETFLLADERTDMTGFEDA*
Ga0150984_1113824411	3300012469	Avena Fatua Rhizosphere	MAEEFKSIVEQATGRVVRAFMSETSVEADVSVEFFLLGEARTDMLGFEADG*
Ga0150984_1155612231	3300012469	Avena Fatua Rhizosphere	TGRKVRVFLSETNIDQDVSVETFLLADERTDMTDFEDA*
Ga0157285_103586781	3300012897	Soil	TSIVEQVTGRKVRAFLSETDIEQDVSVETFLLAGGRTDMTEFEED*
Ga0157295_103938242	3300012906	Soil	AESFTSVVEQATGRKVRVFLSETDIEQDVSVETFLLAEQRTDMTGFEEG*
Ga0164307_103060691	3300012987	Soil	MAEDFTSVVEQATGRRVRAFLSDTDIAQDVSVETFLLADDRTDMSDFESA*
Ga0157372_121610913	3300013307	Corn Rhizosphere	AMADSFTSVVEQATGRKVRAFLSETDIEQDVSVETFLLADERTDMTGFEDA*
Ga0157375_123533841	3300013308	Miscanthus Rhizosphere	HIRRRFQQQMADDFTSVVEQATGRKVRVFLSETNIDQDVSVETFLLSDGRTDMTDFEDG*
Ga0075309_11862342	3300014268	Natural And Restored Wetlands	EQATGRTVRAFLSDTNIDQDVSVETFLLADDRTDMTAFEDA*
Ga0190265_106699091	3300018422	Soil	ATGREVRSFFSDTDLSQDISVEVFILAGERTDMHDFEPGVGAP
Ga0190265_125413531	3300018422	Soil	EEFTALVEQATDRVVRAFLSETHLEADISVEFFLLADDRTDMSGFEDAGAPGA
Ga0190275_121613601	3300018432	Soil	EQFVAIVEQATGRRVRAFLSETNLKEDISVEVFILAEARTDMSDFEELSGEAG
Ga0066662_100030886	3300018468	Grasslands Soil	FKGIVEQATGRVVRAFMSETNLEADVSVELFLLGKARTDMKGVLIDR
Ga0190270_101166525	3300018469	Soil	MKFTSVVEQATGRTVRVFLSETNIDQDVSVETFLLADGRTDMSDFENG
Ga0190270_111763401	3300018469	Soil	QMAESFTSLVEQATGRKVRVFLSETDVDSDVSVETFLLAEERTDMTSFEES
Ga0190270_118099451	3300018469	Soil	NFTSLVEQATGRKVRVFLSETDIEQDVSVETFLLAAERTDMTGFEET
Ga0190270_119884431	3300018469	Soil	EFTSVVEQATGRKVRVFLSETNIDQDVSVETFLLADERTDMTDFEDA
Ga0190270_122120901	3300018469	Soil	EFTSVVEQATGRKVRVFLSETNIDQDVSVETFLLADGRTDMTDFENG
Ga0190274_121437972	3300018476	Soil	MKFTSVVEQATGRTVRVFLSETNIDQDVSVETFLLADERTDMSDFENG
Ga0190271_109355401	3300018481	Soil	TGRKVRTFLSETDIDGDVSVETFLLADDRTDMGGFEKA
Ga0190271_127376481	3300018481	Soil	MAAQFSAIVEQATGRKVRAFLSETNLEADVAVEIFLLADERTDMTGFEQAGEEADPQD
Ga0207705_113217482	3300025909	Corn Rhizosphere	SVVEQATGRKVRVFLSETDIEQDVSVETFLLAEERTDMTGFEEA
Ga0207687_119647952	3300025927	Miscanthus Rhizosphere	ATGRKVRVFLSDTDIEQDVSVETFLLAEERTDMTGFEEA
Ga0207690_118756062	3300025932	Corn Rhizosphere	LEIRRRFQQSMADEFKAIVEQATGRVVRAFLSETNLEADVAVEFFLLGEPRTDMQGFEPRQS
Ga0207661_118171942	3300025944	Corn Rhizosphere	QHIRRRFQQQMADSFTSVVEQATGRKVRVFLSETDIDSDVSVETFLLAEQRTDMTGFEEG
Ga0207708_110302701	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	GRKVRVFLSETDIDNDVSVETFLLADERTDMTGFEEA
Ga0207702_105816571	3300026078	Corn Rhizosphere	ADDGDEFKGIVEQATGRVVRAFLSETNLEADVAVEFFLLGERRTDMHGFEPGSAR
Ga0207675_1009021641	3300026118	Switchgrass Rhizosphere	FQQQMADDFTSVVEQATGRKVRVFLSETNIDQDVSVETFLLADGRTDMTDFEDA
Ga0207675_1026841161	3300026118	Switchgrass Rhizosphere	QQQMADSFISIVEQATGRRVRAFLSETDIDQDVSVETFLLADDRTDMTAFEDT
Ga0207698_106102841	3300026142	Corn Rhizosphere	FQQQMAEEFTSVVEQATGRSVRAFLSETNIEQDVSVETFLLSDERTDMTDFENA
Ga0268265_109028482	3300028380	Switchgrass Rhizosphere	MADDFTSVVEQATGRKVRVFLSETNIDQDVSVETFLLADGRTDMTDFEDA
Ga0307315_101875702	3300028721	Soil	IVEQATGRKVRAFLSETDIEQDVSVETFLLADDRTDMTSFEGA
Ga0307282_103357511	3300028784	Soil	SLAERGERDAIEHIRRRFQQQMADDFTSVVEQATGRVFLSETNIDQDVSVETFLLAGERADMTDFENP
Ga0307289_103184961	3300028875	Soil	MADEFTSVVEQATGRKVRVFLSETNIEQDVSVETFVLADGRTDNRRTT
Ga0307277_101589993	3300028881	Soil	FQQQMAEDFTSVVEQATGRKVRVFLSETDIDHDVSVETFLLADERTDMTGFEDP
Ga0307308_103693191	3300028884	Soil	FSSVVEQATGRKVRTFLSETNVEQDVSVETFLLADGRTDMTAFEGE
Ga0307308_105792282	3300028884	Soil	VEQATGRKVRVFLSETDIDHDVSVETFLLADERTDMTGFEDT
Ga0308201_102898292	3300031091	Soil	EGFTSVVEQATGRKVRVFLSETDVDQDVSVETFLLADERTDMSVFEES
Ga0308194_101619151	3300031421	Soil	ESFSSIVEQATGRKVRTFLSETNVEQDVSVETFLLADGRTDMTAFEGE
Ga0307405_114001882	3300031731	Rhizosphere	TSIVEQATGRKVRAFLSETNIEQDVSVETFLLADERTDMTGFEDD
Ga0307413_100515005	3300031824	Rhizosphere	EFTALVEQATGRKVRAFLSETHLDADVSVEIFLLADDRTDMSGFEPT
Ga0307406_118164012	3300031901	Rhizosphere	ATGRKVRAFLSETDIDKDVSVEMFLLAEPRTDMTRFEDG
Ga0308175_1009467501	3300031938	Soil	FTSVVEQATGRKVRVFLSETNVDLDVSVETFLLAEERTDMTDFEDA
Ga0308176_110976042	3300031996	Soil	TGRKVRVFLSETDIEQDVSVETFLLAEERTDMTGFEEG
Ga0307415_1001442732	3300032126	Rhizosphere	EQATGRKVRAFLSETNLEADVAVEIFLLAPDSRTDMSMFEDGSDPST
Ga0307415_1005824321	3300032126	Rhizosphere	QQQMADSFTSVVEQATGRKVRTFLSETDIEHDVSVETFLLAEDRTDMSGFEGS
Ga0372946_0524451_2_169	3300034384	Soil	MKDNFTSLIEQATGRKVRAFLSETNLEEDVSCEIFLMAEERTDMSGFERKADETG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085352

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences