NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F085487

Metagenome / Metatranscriptome Family F085487

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F085487
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 47 residues
Representative Sequence FEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK
Number of Associated Samples 74
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Archaea
% of genes with valid RBS motifs 1.82 %
% of genes near scaffold ends (potentially truncated) 96.40 %
% of genes from short scaffolds (< 2000 bps) 88.29 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Archaea (90.991 % of family members)
NCBI Taxonomy ID 2157
Taxonomy All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(39.640 % of family members)
Environment Ontology (ENVO) Unclassified
(53.153 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(54.955 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 23.26%    Coil/Unstructured: 76.74%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 111 Family Scaffolds
PF04240Caroten_synth 27.03
PF01865PhoU_div 3.60
PF12681Glyoxalase_2 1.80
PF01451LMWPc 0.90
PF14947HTH_45 0.90
PF01895PhoU 0.90
PF13192Thioredoxin_3 0.90
PF01544CorA 0.90
PF13432TPR_16 0.90
PF00378ECH_1 0.90
PF01022HTH_5 0.90
PF01951Archease 0.90
PF00903Glyoxalase 0.90
PF13649Methyltransf_25 0.90
PF00702Hydrolase 0.90
PF01243Putative_PNPOx 0.90

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 111 Family Scaffolds
COG2324Uncharacterized membrane proteinFunction unknown [S] 27.03
COG1392Phosphate transport regulator YkaA, distantly related to PhoU, UPF0111/DUF47 familyInorganic ion transport and metabolism [P] 3.60
COG0598Mg2+ and Co2+ transporter CorAInorganic ion transport and metabolism [P] 0.90
COG1371Archease, activates RNA ligation by RtcB (tRNA splicing)Translation, ribosomal structure and biogenesis [J] 0.90

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms93.69 %
UnclassifiedrootN/A6.31 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2209111007|2215412717All Organisms → cellular organisms → Archaea537Open in IMG/M
3300002558|JGI25385J37094_10031102All Organisms → cellular organisms → Archaea1881Open in IMG/M
3300002558|JGI25385J37094_10208959All Organisms → cellular organisms → Archaea521Open in IMG/M
3300002560|JGI25383J37093_10052000All Organisms → cellular organisms → Archaea1320Open in IMG/M
3300002909|JGI25388J43891_1046180All Organisms → cellular organisms → Archaea654Open in IMG/M
3300005166|Ga0066674_10083003All Organisms → cellular organisms → Archaea1477Open in IMG/M
3300005167|Ga0066672_10451402All Organisms → cellular organisms → Archaea839Open in IMG/M
3300005167|Ga0066672_10479777All Organisms → cellular organisms → Archaea809Open in IMG/M
3300005172|Ga0066683_10077161All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2002Open in IMG/M
3300005174|Ga0066680_10054622All Organisms → cellular organisms → Archaea2354Open in IMG/M
3300005177|Ga0066690_10243102All Organisms → cellular organisms → Archaea1206Open in IMG/M
3300005178|Ga0066688_10404197All Organisms → cellular organisms → Archaea885Open in IMG/M
3300005445|Ga0070708_100756960Not Available913Open in IMG/M
3300005467|Ga0070706_102081387Not Available513Open in IMG/M
3300005540|Ga0066697_10150485All Organisms → cellular organisms → Archaea1374Open in IMG/M
3300005540|Ga0066697_10347337All Organisms → cellular organisms → Archaea864Open in IMG/M
3300005555|Ga0066692_10404919All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon866Open in IMG/M
3300005555|Ga0066692_10838044All Organisms → cellular organisms → Archaea564Open in IMG/M
3300005557|Ga0066704_10070181All Organisms → cellular organisms → Archaea2254Open in IMG/M
3300005557|Ga0066704_10521501All Organisms → cellular organisms → Archaea779Open in IMG/M
3300005559|Ga0066700_11108298All Organisms → cellular organisms → Archaea517Open in IMG/M
3300005586|Ga0066691_10650064All Organisms → cellular organisms → Archaea625Open in IMG/M
3300006034|Ga0066656_10261704All Organisms → cellular organisms → Archaea1112Open in IMG/M
3300006034|Ga0066656_10883123All Organisms → cellular organisms → Archaea572Open in IMG/M
3300006791|Ga0066653_10465237All Organisms → cellular organisms → Archaea643Open in IMG/M
3300006791|Ga0066653_10619403All Organisms → cellular organisms → Archaea551Open in IMG/M
3300006797|Ga0066659_11394100All Organisms → cellular organisms → Archaea585Open in IMG/M
3300006797|Ga0066659_11438864All Organisms → cellular organisms → Archaea576Open in IMG/M
3300006800|Ga0066660_11097717All Organisms → cellular organisms → Archaea631Open in IMG/M
3300009012|Ga0066710_100578235All Organisms → cellular organisms → Archaea1702Open in IMG/M
3300009012|Ga0066710_101958570Not Available872Open in IMG/M
3300009038|Ga0099829_11417460All Organisms → cellular organisms → Archaea574Open in IMG/M
3300009088|Ga0099830_10546734All Organisms → cellular organisms → Archaea947Open in IMG/M
3300009089|Ga0099828_10378634All Organisms → cellular organisms → Archaea1276Open in IMG/M
3300009137|Ga0066709_102914299All Organisms → cellular organisms → Archaea631Open in IMG/M
3300009137|Ga0066709_102969971All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon623Open in IMG/M
3300010303|Ga0134082_10457767All Organisms → cellular organisms → Archaea552Open in IMG/M
3300010325|Ga0134064_10029058All Organisms → cellular organisms → Archaea1614Open in IMG/M
3300010335|Ga0134063_10080231All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1461Open in IMG/M
3300010335|Ga0134063_10383883All Organisms → cellular organisms → Archaea687Open in IMG/M
3300010336|Ga0134071_10416124All Organisms → cellular organisms → Archaea686Open in IMG/M
3300011270|Ga0137391_10179381All Organisms → cellular organisms → Archaea1845Open in IMG/M
3300011270|Ga0137391_10297568All Organisms → cellular organisms → Archaea1393Open in IMG/M
3300012096|Ga0137389_11292599All Organisms → cellular organisms → Archaea623Open in IMG/M
3300012199|Ga0137383_10581202All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon820Open in IMG/M
3300012199|Ga0137383_10865089All Organisms → cellular organisms → Archaea660Open in IMG/M
3300012201|Ga0137365_10704576All Organisms → cellular organisms → Archaea738Open in IMG/M
3300012202|Ga0137363_10096053All Organisms → cellular organisms → Archaea2242Open in IMG/M
3300012203|Ga0137399_10998917All Organisms → cellular organisms → Archaea705Open in IMG/M
3300012203|Ga0137399_11379633All Organisms → cellular organisms → Archaea590Open in IMG/M
3300012206|Ga0137380_10124920All Organisms → cellular organisms → Archaea2350Open in IMG/M
3300012206|Ga0137380_10351375All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1315Open in IMG/M
3300012206|Ga0137380_10878638All Organisms → cellular organisms → Archaea771Open in IMG/M
3300012206|Ga0137380_11412985All Organisms → cellular organisms → Archaea581Open in IMG/M
3300012206|Ga0137380_11456852Not Available569Open in IMG/M
3300012207|Ga0137381_10292425All Organisms → cellular organisms → Archaea1418Open in IMG/M
3300012207|Ga0137381_11066307All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon696Open in IMG/M
3300012207|Ga0137381_11131695All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon673Open in IMG/M
3300012207|Ga0137381_11660730All Organisms → cellular organisms → Archaea529Open in IMG/M
3300012208|Ga0137376_10715709All Organisms → cellular organisms → Archaea863Open in IMG/M
3300012209|Ga0137379_10086546All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3015Open in IMG/M
3300012210|Ga0137378_11374345All Organisms → cellular organisms → Archaea620Open in IMG/M
3300012211|Ga0137377_10857295All Organisms → cellular organisms → Archaea841Open in IMG/M
3300012349|Ga0137387_10502074All Organisms → cellular organisms → Archaea880Open in IMG/M
3300012349|Ga0137387_10936424All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon624Open in IMG/M
3300012355|Ga0137369_10039010All Organisms → cellular organisms → Archaea4270Open in IMG/M
3300012356|Ga0137371_10001279All Organisms → cellular organisms → Archaea20037Open in IMG/M
3300012356|Ga0137371_10089042All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2398Open in IMG/M
3300012356|Ga0137371_10845907All Organisms → cellular organisms → Archaea696Open in IMG/M
3300012359|Ga0137385_10280084All Organisms → cellular organisms → Archaea1438Open in IMG/M
3300012359|Ga0137385_10733778All Organisms → cellular organisms → Archaea824Open in IMG/M
3300012359|Ga0137385_11040802All Organisms → cellular organisms → Archaea675Open in IMG/M
3300012363|Ga0137390_10236204All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera1814Open in IMG/M
3300012379|Ga0134058_1157253All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon713Open in IMG/M
3300012918|Ga0137396_10034726All Organisms → cellular organisms → Archaea3365Open in IMG/M
3300012918|Ga0137396_10230534All Organisms → cellular organisms → Archaea1364Open in IMG/M
3300012918|Ga0137396_10787503All Organisms → cellular organisms → Archaea700Open in IMG/M
3300012918|Ga0137396_10964517All Organisms → cellular organisms → Archaea620Open in IMG/M
3300012918|Ga0137396_11154165All Organisms → cellular organisms → Archaea550Open in IMG/M
3300012918|Ga0137396_11299196All Organisms → cellular organisms → Bacteria → Terrabacteria group505Open in IMG/M
3300012972|Ga0134077_10513900All Organisms → cellular organisms → Archaea532Open in IMG/M
3300012976|Ga0134076_10504211All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon RBG_19FT_COMBO_69_17553Open in IMG/M
3300012977|Ga0134087_10542367All Organisms → cellular organisms → Archaea593Open in IMG/M
3300014154|Ga0134075_10043469All Organisms → cellular organisms → Archaea1846Open in IMG/M
3300015359|Ga0134085_10261744All Organisms → cellular organisms → Archaea754Open in IMG/M
3300017657|Ga0134074_1144385All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon830Open in IMG/M
3300018433|Ga0066667_10490097All Organisms → cellular organisms → Archaea1011Open in IMG/M
3300018433|Ga0066667_10689873All Organisms → cellular organisms → Archaea856Open in IMG/M
3300018468|Ga0066662_10187753All Organisms → cellular organisms → Archaea1617Open in IMG/M
3300018468|Ga0066662_11844674All Organisms → cellular organisms → Archaea633Open in IMG/M
3300021046|Ga0215015_10498037All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon615Open in IMG/M
3300021046|Ga0215015_11103669All Organisms → cellular organisms → Archaea995Open in IMG/M
3300025922|Ga0207646_11023048Not Available729Open in IMG/M
3300026295|Ga0209234_1122119All Organisms → cellular organisms → Archaea958Open in IMG/M
3300026295|Ga0209234_1213584All Organisms → cellular organisms → Archaea644Open in IMG/M
3300026296|Ga0209235_1089920All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1347Open in IMG/M
3300026310|Ga0209239_1281843All Organisms → cellular organisms → Archaea573Open in IMG/M
3300026313|Ga0209761_1000692All Organisms → cellular organisms → Archaea21076Open in IMG/M
3300026324|Ga0209470_1355017All Organisms → cellular organisms → Archaea525Open in IMG/M
3300026326|Ga0209801_1089667All Organisms → cellular organisms → Archaea1340Open in IMG/M
3300026326|Ga0209801_1184285All Organisms → cellular organisms → Archaea854Open in IMG/M
3300026328|Ga0209802_1135233All Organisms → cellular organisms → Archaea1063Open in IMG/M
3300026342|Ga0209057_1169993All Organisms → cellular organisms → Archaea640Open in IMG/M
3300026523|Ga0209808_1021588All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3186Open in IMG/M
3300026532|Ga0209160_1219605All Organisms → cellular organisms → Archaea671Open in IMG/M
3300026540|Ga0209376_1342530All Organisms → cellular organisms → Archaea567Open in IMG/M
3300027671|Ga0209588_1162901All Organisms → cellular organisms → Archaea704Open in IMG/M
3300027862|Ga0209701_10300943All Organisms → cellular organisms → Archaea921Open in IMG/M
3300031576|Ga0247727_10630450Not Available799Open in IMG/M
3300032180|Ga0307471_102240107All Organisms → cellular organisms → Archaea689Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil39.64%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil27.03%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil15.32%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil10.81%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.70%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.80%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.90%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.90%
Speleothem And Rock Wall SurfacesEnvironmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Speleothem And Rock Wall Surfaces0.90%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2209111007Cave microbial community (Dry rock wall)EnvironmentalOpen in IMG/M
3300002558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cmEnvironmentalOpen in IMG/M
3300002560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cmEnvironmentalOpen in IMG/M
3300002909Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cmEnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaGEnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012379Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300015359Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015EnvironmentalOpen in IMG/M
3300017657Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026295Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300026326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026342Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)EnvironmentalOpen in IMG/M
3300026523Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)EnvironmentalOpen in IMG/M
3300026532Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)EnvironmentalOpen in IMG/M
3300026540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300031576Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
22145439112209111007Speleothem And Rock Wall SurfacesFMTQSPKLAWLNTTKGWVEGTADQAPGTFHAKVYSKK
JGI25385J37094_1003110243300002558Grasslands SoilDGNVAFEGEQKFMTQSPSLSWLNNTKGWIEGTANQSDQTFTAKVYAKK*
JGI25385J37094_1020895913300002558Grasslands SoilRNNGDGTISFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
JGI25383J37093_1005200023300002560Grasslands SoilTSHGKGRNNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
JGI25388J43891_104618023300002909Grasslands SoilFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0066674_1008300323300005166SoilIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0066672_1045140213300005167SoilNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0066672_1047977723300005167SoilHGKGRNNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0066683_1007716113300005172SoilGDVHFMTQSPRLSWLNNTKGWIDGTANQAEQSFTAKVYAKK*
Ga0066680_1005462213300005174SoilGKGHRTADGNVTFEGEQKYMTQSPNLSWLNNTKGWIEGTANQAEQTFTAKVYAKK*
Ga0066690_1024310213300005177SoilVVATGHGKSRTNADGTISFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0066688_1040419713300005178SoilEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0070708_10075696013300005445Corn, Switchgrass And Miscanthus RhizosphereGKGHTGPDGNVMFEGEQKYMTQAPSLSWINSTKAWIEGQANRADQSFTAKVYARK*
Ga0070706_10208138713300005467Corn, Switchgrass And Miscanthus RhizosphereGEQKYMTQAPSLSWINSTKAWIEGQANRADQSFTAKVYARK*
Ga0066697_1015048533300005540SoilGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0066697_1034733713300005540SoilVKYMTQSPSLSWLNTTKGWIEGTATQADQTFTAKIYAKK*
Ga0066692_1040491923300005555SoilTDGNVAFEGEQKFMTQSPSLSWLNNTKGWIEGTANQADQTFTAKVYAKK*
Ga0066692_1083804423300005555SoilEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0066704_1007018113300005557SoilFEGEQKYMTQSPNLSWLNNTKGWIEGIANQAEQTFTAKVYAKK*
Ga0066704_1052150113300005557SoilKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0066700_1110829813300005559SoilADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0066691_1065006423300005586SoilYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0066656_1026170423300006034SoilDGKVSFEGEVKYMTQSPSLSWLNTTKGWIEGTATQADQTFTAKIYAKK*
Ga0066656_1088312313300006034SoilGHQTGPGTIAFEGDVHFMTQSPRLSWLNNTKGWIDGTANQSEQSFTAKVYAKK*
Ga0066653_1046523723300006791SoilQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0066653_1061940313300006791SoilQKYLTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0066659_1139410013300006797SoilSHGKGKQTADGKVSFEGEVKYMTQSPSLSWLNTTKGWIEGSATQADQTFTAKVYAKK*
Ga0066659_1143886413300006797SoilNADGTIWFEGEQKYMTQSPSLSWLNSTKGWIEGTASQADQTFTAKVYAKK*
Ga0066660_1109771713300006800SoilGEQKYMTQSPSLSWLNNTKGSIEGTASQADQTFTAKVYAKK*
Ga0066710_10057823543300009012Grasslands SoilEVTFMTQSPKLAWLNNTKGWQEGTANMADQTFTAKIYAKK
Ga0066710_10195857023300009012Grasslands SoilTFMTQSPKLAWLNNTKGWQEGTANMADQTFTAKIYAKK
Ga0099829_1141746013300009038Vadose Zone SoilGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0099830_1054673413300009088Vadose Zone SoilKRNADGTISFEGEQKYMTQSPSLSWLNNTKGWIEGSANQADQTFTAKVYAKK*
Ga0099828_1037863413300009089Vadose Zone SoilFEGEQKYMTQSPSLSWLNNTKGWIEGSANQADQTFTAKVYAKK*
Ga0099828_1159220023300009089Vadose Zone SoilQSSKLAWLNNTKGWVEGTIQDMAQGTYHAKVYAKK*
Ga0066709_10291429913300009137Grasslands SoilKGRNNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKV*
Ga0066709_10296997113300009137Grasslands SoilHFMTQSPRLSWLNNTKGWIDGTANQAEQSFTAKVYAKK*
Ga0134082_1045776713300010303Grasslands SoilTIAFEGDVHFMTQSPRLSWLNNTKGWIDGTANQSEQSFTAKVYAKK*
Ga0134064_1002905823300010325Grasslands SoilDGKISFEGDVKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0134063_1008023113300010335Grasslands SoilIAFEGDVHFMTQSPRLSWLNNTKGWIDGTANQAEQSFTAKVYAKK*
Ga0134063_1038388313300010335Grasslands SoilMTQSPSLSWFNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0134071_1041612413300010336Grasslands SoilTFMTQSPKLAWLNNTKGWQEGTANMADQTFTAKVYAKK*
Ga0137391_1017938113300011270Vadose Zone SoilTNADGTISFEGEQKYMTQSPNLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0137391_1029756813300011270Vadose Zone SoilGEQKYMTQSPNLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0137389_1129259913300012096Vadose Zone SoilQSPSLSWLNNTKGWIEGTANQADQTFTAKVYAKK*
Ga0137383_1058120213300012199Vadose Zone SoilMVVVTGHGKGHRGPDGNVMFEGEQKYVTQSPNLSWLNTTKAWIEGAANLADQTFTAKVYSKK*
Ga0137383_1086508913300012199Vadose Zone SoilNNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0137365_1070457623300012201Vadose Zone SoilGRNNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0137363_1009605313300012202Vadose Zone SoilISFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0137399_1099891713300012203Vadose Zone SoilHGKGKTTADGKIWFEGDVKYMTQSPSLSWLNNTKGWIEGTATQADQTFTAKVYAKK*
Ga0137399_1137963313300012203Vadose Zone SoilVKYMTQSPSLSWLNNTKGWIEGSANQADQTFTAKVYAKK*
Ga0137380_1012492043300012206Vadose Zone SoilGHRGPDGNVMFEGEQKYMTQSPNLSWLNTTKAWIEGAANLADQTFTAKVYARK*
Ga0137380_1035137523300012206Vadose Zone SoilEGDVHFMTQSPRLSWLNNTKGWIDGTANQAEQSFTAKVYAKK*
Ga0137380_1087863813300012206Vadose Zone SoilTVSFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0137380_1141298513300012206Vadose Zone SoilVSFDGEVKFMTQSPNLSWLNTTKGWIEGTATQADQTFTAKVYAKK*
Ga0137380_1145685213300012206Vadose Zone SoilTTWEGELTYMTKSPKLAWLNNTKGLIEGTANQVEGQFTAKVHAKK*
Ga0137381_1029242533300012207Vadose Zone SoilGNVAFEGEQKFMTQSPSLSWLNNTKGWIEGTANQADQTFTAKVYAKK*
Ga0137381_1106630723300012207Vadose Zone SoilHRGPDGNVMFEGEQKYMTQSPNLSWLNTTKAWIEGAANLADQTFTAKVYARK*
Ga0137381_1113169523300012207Vadose Zone SoilFEGEQKYMTQSPSLSWLNTTKGWIEGTATQADQTFTAKVYAKK*
Ga0137381_1166073013300012207Vadose Zone SoilQSPSLSWLNTTKGWIEGTATQADQTFTAKVYAKK*
Ga0137376_1071570913300012208Vadose Zone SoilSHGKGRNNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0137379_1008654613300012209Vadose Zone SoilTQSPRLSWLNNTKGWIDGTANQAEQSFTAKVYAKK*
Ga0137378_1137434513300012210Vadose Zone SoilKGRNNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0137377_1085729513300012211Vadose Zone SoilEGEQKYMTQSPNLSWLNTTKAWIEGAANLADQTFTAKVYARK*
Ga0137387_1050207413300012349Vadose Zone SoilQSPNLSWLNTTKGWIEGTATQADQTFTAKVYAKK*
Ga0137387_1093642413300012349Vadose Zone SoilAFEGDVHFMTQSPRLSWLNNTKGWIDGTANQAEQSFTAKVYAKK*
Ga0137369_1003901013300012355Vadose Zone SoilGEVKYMTQSPSLSWLNTTKGWIEGIATQADQTFTAKIYAKK*
Ga0137371_10001279213300012356Vadose Zone SoilHGKGHRGPDGNVMFEGEQKYMTQSPNLSWLNTTKAWIEGAANLADQTFTAKVYARK*
Ga0137371_1008904213300012356Vadose Zone SoilTGPGTIAFEGDVHFMTQSPRLSWLNNTKGWIDGTANQAEQSFTAKVYAKK*
Ga0137371_1084590713300012356Vadose Zone SoilRNNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0137385_1028008433300012359Vadose Zone SoilKGHRGPDGNVMFEGDQKYMTQWPNLSWLNTTKAWIEGAANQADQTFTAKVYAKK*
Ga0137385_1073377813300012359Vadose Zone SoilATSHGKGRNNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0137385_1104080223300012359Vadose Zone SoilGKGRNNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0137390_1023620433300012363Vadose Zone SoilTFMTQSPKLAWLNNTKGWQEGTANMADQTFTAKIYAKK*
Ga0134058_115725313300012379Grasslands SoilHQTGPGTIAFEGDVHFMTQSPRLSWLNNTKGWIDGTANQAEQSFTAKVYAKK*
Ga0137396_1003472653300012918Vadose Zone SoilGKRNADGNIWFEGEQKYMTQSPSLSWLNTTKGWIEGTANQADQTFTAKVYAKK*
Ga0137396_1023053423300012918Vadose Zone SoilGKGKTTADGKIWFEGDVKYMTQSPSLSWLNNTKGWIEGTATQADQTFTAKVYAKK*
Ga0137396_1078750313300012918Vadose Zone SoilKGKQNADGTVSFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0137396_1096451713300012918Vadose Zone SoilGKIWFEGDVKYMTQSPSLSWLNNTKGWIEGTATQADQTFTAKVYAKK*
Ga0137396_1115416513300012918Vadose Zone SoilRGKGRQNADGTVWFEGEQKFMTQSPNLAWLNNTKGWIEGTASRADQTFTAKVYAKK*
Ga0137396_1129919613300012918Vadose Zone SoilMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0134077_1051390013300012972Grasslands SoilEGEVKYMTQSPSLSWLNTTKGWIEGTATQADQTFTAKIYAKK*
Ga0134076_1050421113300012976Grasslands SoilQSPKLAWLNNTKGWTEGTANQADQTFTAKVYAKK*
Ga0134087_1054236723300012977Grasslands SoilSHGKGRSNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK*
Ga0134075_1004346943300014154Grasslands SoilTFMTQSPKLAWLNNTKGWTEGTANQADQTFTAKVYAKK*
Ga0134085_1026174423300015359Grasslands SoilEVKYMTQSPSLSWLNTTKGWIEGTATQADQTFTAKIYAKK*
Ga0134074_114438513300017657Grasslands SoilDVHFMTQSPRLSWLNNTKGWIDGTANQAEQSFTAKVYAKK
Ga0066667_1049009723300018433Grasslands SoilGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK
Ga0066667_1068987313300018433Grasslands SoilKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK
Ga0066662_1018775313300018468Grasslands SoilTADGNVAFEGEQKFMTQSPSLSWLNNTKGWIEGTANQSDQTFTAKVYAKK
Ga0066662_1184467413300018468Grasslands SoilGKGRNNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK
Ga0215015_1049803733300021046SoilMTQSPKLAWLNNTKGWVEGTGDQAAGTFHGKIYENK
Ga0215015_1110366923300021046SoilMCIRDSGKGKQLPDGKISFEGEQKYMTQAPSLSWLNTTKGWIEGTANQADRTFTAKVYAK
Ga0207646_1102304813300025922Corn, Switchgrass And Miscanthus RhizosphereKYMTQAPSLSWINSTKAWIEGQANRADQSFTAKVYARK
Ga0209234_112211923300026295Grasslands SoilMVVATSHGKGRNNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQVDQTFTAKVYAKK
Ga0209234_121358423300026295Grasslands SoilMVVATSHGKGRNNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK
Ga0209235_108992013300026296Grasslands SoilVHFMTQSPRLSWLNNTKGWIDGTANQAEQSFTAKVYAKK
Ga0209239_128184323300026310Grasslands SoilTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK
Ga0209761_100069213300026313Grasslands SoilQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK
Ga0209470_135501713300026324SoilVPGTIAFEGDVHFMTQSPRLSWLNNTKGWIDGTANQAEQSFTAKVYAKK
Ga0209801_108966713300026326SoilVATSHGKGRNNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQVDQTFTAKVYAKK
Ga0209801_118428523300026326SoilATGHGKSRTNADGTISFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK
Ga0209802_113523313300026328SoilFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK
Ga0209057_116999313300026342SoilKGRNNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK
Ga0209808_102158813300026523SoilTSHGKGRNNADGTIWFEGEQKYMTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK
Ga0209160_121960513300026532SoilEQKYMTQSPNLSWLNNTKGWIEGIANQAEQTFTAKVYAKK
Ga0209376_134253013300026540SoilEGDVHFMTQSPRLSWLNNTKGWIDGTANQAEQSFTAKVYAKK
Ga0209588_116290113300027671Vadose Zone SoilTQSPSLSWLNNTKGWIEGTASQADQTFTAKVYAKK
Ga0209701_1030094313300027862Vadose Zone SoilDMVVVTGHGKGHRGADGNIMFEGEQKYMTQSPTLSWLNTTKAWIEGSANQADQTFTAKVYAKK
Ga0247727_1063045013300031576BiofilmMTQSPKLAWLNTTKGWVEGTGDQAAGTFHAKFYAKK
Ga0307471_10224010713300032180Hardwood Forest SoilTQSPNLSWLNTTKAWIEGTANQADQTFTAKVYAKK

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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