Metagenome Family F085839

Basic Information
Family ID	F085839
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	82 residues
Representative Sequence	MTPNRSQIEALVMQIQEEFLRRPAVRLTLNEIARRMDASLVLCKAVLRVLVDARVLAETPGGVYERFFPLAARTSRASAA
Number of Associated Samples	89
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.73 %
% of genes near scaffold ends (potentially truncated)	24.32 %
% of genes from short scaffolds (< 2000 bps)	81.08 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Most Common Taxonomy
Group	Bacteria (64.865 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere (13.514 % of family members)
Environment Ontology (ENVO)	Unclassified (62.162 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (78.378 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.33% β-sheet: 0.00% Coil/Unstructured: 41.67%
Feature Viewer

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Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF10503	Esterase_PHB	23.42
PF08028	Acyl-CoA_dh_2	7.21
PF00069	Pkinase	2.70
PF00535	Glycos_transf_2	0.90
PF13676	TIR_2	0.90
PF12697	Abhydrolase_6	0.90
PF13620	CarboxypepD_reg	0.90
PF13670	PepSY_2	0.90
PF12840	HTH_20	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	10.81
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	7.21

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.86 %
Unclassified	root	N/A	35.14 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.86 %
Unclassified	root	N/A	35.14 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.86 %
Unclassified	root	N/A	35.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	20.72 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.50 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	2.70 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	2.70 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	2.70 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	2.70 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	2.70 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.14 %
Luteitalea sp. TBR-22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	2.70 %
Streptomyces justiciae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces justiciae	0.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_103251430	All Organisms → cellular organisms → Bacteria	3878	Open in IMG/M
3300000956\|JGI10216J12902_105552100	Not Available	654	Open in IMG/M
3300004114\|Ga0062593_102606333	Not Available	574	Open in IMG/M
3300005295\|Ga0065707_10670905	Not Available	653	Open in IMG/M
3300005328\|Ga0070676_10090003	All Organisms → cellular organisms → Bacteria	1878	Open in IMG/M
3300005328\|Ga0070676_11026558	Not Available	620	Open in IMG/M
3300005331\|Ga0070670_100003340	All Organisms → cellular organisms → Bacteria	13281	Open in IMG/M
3300005331\|Ga0070670_100702770	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300005331\|Ga0070670_100882535	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	810	Open in IMG/M
3300005333\|Ga0070677_10122626	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
3300005333\|Ga0070677_10237241	All Organisms → cellular organisms → Bacteria → Acidobacteria	899	Open in IMG/M
3300005334\|Ga0068869_100346414	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300005334\|Ga0068869_101191546	Not Available	669	Open in IMG/M
3300005337\|Ga0070682_101524775	Not Available	575	Open in IMG/M
3300005340\|Ga0070689_100832260	Not Available	813	Open in IMG/M
3300005341\|Ga0070691_10851506	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300005354\|Ga0070675_100083502	All Organisms → cellular organisms → Bacteria	2666	Open in IMG/M
3300005354\|Ga0070675_101001364	Not Available	767	Open in IMG/M
3300005354\|Ga0070675_101781155	Not Available	568	Open in IMG/M
3300005354\|Ga0070675_101854500	Not Available	556	Open in IMG/M
3300005355\|Ga0070671_100002848	All Organisms → cellular organisms → Bacteria	13439	Open in IMG/M
3300005356\|Ga0070674_100576233	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300005441\|Ga0070700_101566639	Not Available	562	Open in IMG/M
3300005466\|Ga0070685_10052082	All Organisms → cellular organisms → Bacteria → Acidobacteria	2368	Open in IMG/M
3300005468\|Ga0070707_101577871	Not Available	623	Open in IMG/M
3300005544\|Ga0070686_100138892	All Organisms → cellular organisms → Bacteria	1689	Open in IMG/M
3300005544\|Ga0070686_101414344	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300005615\|Ga0070702_101013026	Not Available	658	Open in IMG/M
3300005616\|Ga0068852_102831437	Not Available	503	Open in IMG/M
3300005617\|Ga0068859_100057494	All Organisms → cellular organisms → Bacteria → Acidobacteria	3918	Open in IMG/M
3300005617\|Ga0068859_100465722	All Organisms → cellular organisms → Bacteria	1360	Open in IMG/M
3300005617\|Ga0068859_102659333	Not Available	550	Open in IMG/M
3300005719\|Ga0068861_100584575	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300005834\|Ga0068851_10008804	All Organisms → cellular organisms → Bacteria	4677	Open in IMG/M
3300005836\|Ga0074470_10522535	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300005844\|Ga0068862_101817576	Not Available	619	Open in IMG/M
3300006237\|Ga0097621_100560358	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300006237\|Ga0097621_101359457	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300006358\|Ga0068871_100574305	All Organisms → cellular organisms → Bacteria → Acidobacteria	1023	Open in IMG/M
3300006755\|Ga0079222_11064333	Not Available	705	Open in IMG/M
3300006806\|Ga0079220_10438319	All Organisms → cellular organisms → Bacteria → Acidobacteria	869	Open in IMG/M
3300006844\|Ga0075428_100325955	All Organisms → cellular organisms → Bacteria	1650	Open in IMG/M
3300006844\|Ga0075428_100801914	All Organisms → cellular organisms → Bacteria → Acidobacteria	1001	Open in IMG/M
3300006876\|Ga0079217_10123059	All Organisms → cellular organisms → Bacteria → Acidobacteria	1208	Open in IMG/M
3300006881\|Ga0068865_101107153	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300006918\|Ga0079216_10106395	Not Available	1371	Open in IMG/M
3300007004\|Ga0079218_10036675	All Organisms → cellular organisms → Bacteria	2909	Open in IMG/M
3300009094\|Ga0111539_10837683	All Organisms → cellular organisms → Bacteria → Acidobacteria	1070	Open in IMG/M
3300009094\|Ga0111539_11353042	Not Available	826	Open in IMG/M
3300009098\|Ga0105245_10427374	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300009156\|Ga0111538_13661201	Not Available	532	Open in IMG/M
3300009177\|Ga0105248_10437178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1474	Open in IMG/M
3300009553\|Ga0105249_11611069	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300009553\|Ga0105249_12224841	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	621	Open in IMG/M
3300009610\|Ga0105340_1084008	Not Available	1265	Open in IMG/M
3300011119\|Ga0105246_10100694	All Organisms → cellular organisms → Bacteria	2103	Open in IMG/M
3300011119\|Ga0105246_11160392	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300011415\|Ga0137325_1036197	Not Available	1020	Open in IMG/M
3300012212\|Ga0150985_118630780	All Organisms → cellular organisms → Bacteria → Acidobacteria	636	Open in IMG/M
3300013308\|Ga0157375_11135468	Not Available	915	Open in IMG/M
3300014325\|Ga0163163_10198524	All Organisms → cellular organisms → Bacteria	2054	Open in IMG/M
3300014745\|Ga0157377_10503310	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300014968\|Ga0157379_11057659	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300014969\|Ga0157376_10507438	All Organisms → cellular organisms → Bacteria	1186	Open in IMG/M
3300015371\|Ga0132258_11486567	All Organisms → cellular organisms → Bacteria	1711	Open in IMG/M
3300017792\|Ga0163161_11506162	Not Available	591	Open in IMG/M
3300018073\|Ga0184624_10480164	Not Available	543	Open in IMG/M
3300018469\|Ga0190270_11163862	All Organisms → cellular organisms → Bacteria → Acidobacteria	808	Open in IMG/M
3300018476\|Ga0190274_11785400	Not Available	710	Open in IMG/M
3300018481\|Ga0190271_10907982	Not Available	1005	Open in IMG/M
3300018482\|Ga0066669_12120765	Not Available	531	Open in IMG/M
3300025315\|Ga0207697_10549180	Not Available	508	Open in IMG/M
3300025893\|Ga0207682_10493214	Not Available	580	Open in IMG/M
3300025901\|Ga0207688_10146189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1394	Open in IMG/M
3300025908\|Ga0207643_10032231	All Organisms → cellular organisms → Bacteria	2925	Open in IMG/M
3300025908\|Ga0207643_10368901	Not Available	903	Open in IMG/M
3300025918\|Ga0207662_10149408	All Organisms → cellular organisms → Bacteria	1485	Open in IMG/M
3300025923\|Ga0207681_11119211	Not Available	661	Open in IMG/M
3300025924\|Ga0207694_10006257	All Organisms → cellular organisms → Bacteria → Proteobacteria	9091	Open in IMG/M
3300025926\|Ga0207659_10117632	All Organisms → cellular organisms → Bacteria	2031	Open in IMG/M
3300025926\|Ga0207659_10277345	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1369	Open in IMG/M
3300025926\|Ga0207659_10735163	Not Available	846	Open in IMG/M
3300025927\|Ga0207687_10534243	All Organisms → cellular organisms → Bacteria	982	Open in IMG/M
3300025931\|Ga0207644_10071188	All Organisms → cellular organisms → Bacteria	2543	Open in IMG/M
3300025936\|Ga0207670_10270433	All Organisms → cellular organisms → Bacteria → Acidobacteria	1321	Open in IMG/M
3300025936\|Ga0207670_10280376	Not Available	1299	Open in IMG/M
3300025937\|Ga0207669_10355777	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300025938\|Ga0207704_10356921	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	1140	Open in IMG/M
3300025940\|Ga0207691_10626990	All Organisms → cellular organisms → Bacteria → Acidobacteria	909	Open in IMG/M
3300025941\|Ga0207711_10693981	All Organisms → cellular organisms → Bacteria → Acidobacteria	949	Open in IMG/M
3300025942\|Ga0207689_10603371	All Organisms → cellular organisms → Bacteria → Acidobacteria	923	Open in IMG/M
3300026023\|Ga0207677_12057161	Not Available	531	Open in IMG/M
3300026035\|Ga0207703_10114696	All Organisms → cellular organisms → Bacteria → Acidobacteria	2304	Open in IMG/M
3300026067\|Ga0207678_10279684	All Organisms → cellular organisms → Bacteria → Acidobacteria	1432	Open in IMG/M
3300026088\|Ga0207641_10081987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces justiciae	2802	Open in IMG/M
3300026095\|Ga0207676_10035591	All Organisms → cellular organisms → Bacteria → Proteobacteria	3781	Open in IMG/M
3300026095\|Ga0207676_10134355	All Organisms → cellular organisms → Bacteria	2108	Open in IMG/M
3300026118\|Ga0207675_101218263	Not Available	773	Open in IMG/M
3300027886\|Ga0209486_10001883	All Organisms → cellular organisms → Bacteria	8993	Open in IMG/M
3300028380\|Ga0268265_10588417	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300028802\|Ga0307503_10191239	All Organisms → cellular organisms → Bacteria → Acidobacteria	962	Open in IMG/M
3300028803\|Ga0307281_10123766	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300031538\|Ga0310888_10515008	Not Available	717	Open in IMG/M
3300031740\|Ga0307468_100509040	All Organisms → cellular organisms → Bacteria → Acidobacteria	957	Open in IMG/M
3300031854\|Ga0310904_10768210	Not Available	672	Open in IMG/M
3300031911\|Ga0307412_10347389	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300032013\|Ga0310906_10303006	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300032144\|Ga0315910_10321044	All Organisms → cellular organisms → Bacteria → Acidobacteria	1177	Open in IMG/M
3300032157\|Ga0315912_10082610	All Organisms → cellular organisms → Bacteria → Proteobacteria	2519	Open in IMG/M
3300034113\|Ga0364937_040141	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	64.86%
Environmental	Environmental	35.14%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	64.86%
Terrestrial	Environmental → Terrestrial	31.53%
Aquatic	Environmental → Aquatic	3.60%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.94%
Soil	Environmental → Terrestrial → Soil	30.63%
Rhizoplane	Host-Associated → Plants → Rhizoplane	24.32%
Sediment	Environmental → Aquatic → Sediment	3.60%
Roots	Host-Associated → Plants → Roots	3.60%
Floodplain	Environmental → Terrestrial → Floodplain	0.90%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	22.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	19.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	19.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.12%
Loam	Environmental → Terrestrial → Soil → Loam	10.81%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.60%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.80%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	22.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	19.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.12%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.21%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.60%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	3.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.70%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.90%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	13.51%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	9.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	7.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.31%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	6.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.41%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.41%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	2.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.70%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.80%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.90%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.90%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011415	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT469_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300034113	Sediment microbial communities from East River floodplain, Colorado, United States - 7_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1032514302	3300000956	Soil	MAAKRSQIEALVVSIQQEFLQSPAVRLTLAQIAQRVDASLVMCKAVLRVLVDARVLTQTPAGEFQRFFPHARASRSAAA*
JGI10216J12902_1055521001	3300000956	Soil	MTPTRYEIEALVMQIQEEFLRRPAVRMTLEQIARRLHASMGLCKAVLRVLVDARVLAETPGGVYERFFPAALPRT
Ga0062593_1026063331	3300004114	Soil	MAPARSEIEALVVQIQEEFLQAPAVRLTLEQIVRRLNASAGLCKAVLRVLVDARVLAETPGGVYERFFPHAGRTSRGFAA*
Ga0065707_106709051	3300005295	Switchgrass Rhizosphere	MAPRRSDIEALVVRIQEEFLKAPAVRLSLDQIARRLNASAGLCTAILRVLVDARVLAEAPGGVYERFFPHAAATSRAARIYAA*
Ga0070676_100900032	3300005328	Miscanthus Rhizosphere	MTPTRADIEGLVMRIQEEFLRRPTVRLTLHQIAYRLDASLVLCKAVLRVLVDAKVLAQTPGGVYERFFPLATARASRASAA*
Ga0070676_110265582	3300005328	Miscanthus Rhizosphere	MTPNRSEIEALVMRIQEEFLRTPAVRLTLNQIARQVNASVGLCKAVLRVLVDARVLAQTPGGVYERFFPQASGFQRTSRASAA*
Ga0070670_10000334013	3300005331	Switchgrass Rhizosphere	MTPTRSEIEALVMKIQEEFLRSPAVRLTLAQIARRLNASASLCKAVVRVLVDARVLAETPGGVYARFFPHAAAMPRASRASAA*
Ga0070670_1007027702	3300005331	Switchgrass Rhizosphere	MTPTRAEIEGLVMDIQQQFLRTPAVRLTLNQIARRVNSSVSLCKAVLRVLVDARVLAETPGGAYARYYPQPVALTRSARASAA*
Ga0070670_1008825352	3300005331	Switchgrass Rhizosphere	MAPNRSQIEALVMQIQEEFLRRPAVRLTLNEIARRMDASLVLCKAVLRVLVDARVLAEAPGGAYERFFPYAASAPRTARASAA*
Ga0070677_101226262	3300005333	Miscanthus Rhizosphere	MTPTRADIEGLVMRIQEEFLRRPTVRLTLDQIAYRLDASLVLCKAVLRVLVDAKVLAQTPGGVYERFFPLATARASRASAA*
Ga0070677_102372412	3300005333	Miscanthus Rhizosphere	MTPTRSEIEALVMQIQEEFLRRPAVRLTLNELARRMDASLVLCKAVLRVLVDARVLAQTPGGVYERFFPQAAGMPRASRASAA*
Ga0068869_1003464141	3300005334	Miscanthus Rhizosphere	MAPTRFEIEALVVRIQEEFLHSPAVRMTLNQLALRVDASLVLCKAILRVLVDAKVIAEAPGGAYQRFYPHPARASRGFAA*
Ga0068869_1011915461	3300005334	Miscanthus Rhizosphere	MTPNRSEIEALVMQIQAQFLRTPAVRLTLNQIARQMNASVGLCKAVLRVLVDARVLAQTPGGVYERFFPQAAAMPRASRASAA*
Ga0070682_1015247751	3300005337	Corn Rhizosphere	MTPNRSEIEALVMHIQEEFMRTPAVRMTLNQIARRLNASAGLCKAVLSVLVDARVLAQTPGGVYERFYPRPVMLPRAARASAA*
Ga0070689_1008322602	3300005340	Switchgrass Rhizosphere	MAPTRSEIEALVVRIQAEFLQAPAVRLTFEQVVKRLNASAGLCKAVLRVLVDARVLAETPGGVYERFFPHAGRTSRGFAA*
Ga0070691_108515062	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MRIQEEFLRRPTVRLTLHQIAYRLDASLVLCKAVLRVLVDAKVLAQTPGGVYERFFPLATARASRASAA*
Ga0070675_1000835023	3300005354	Miscanthus Rhizosphere	MTPNRSQIEALVMQIQEEFLRRPAVRLTLTDIARRMDASLVLCKAVLRVLVDARVLAETPGGVYERFFPLASARTSRASAA*
Ga0070675_1010013642	3300005354	Miscanthus Rhizosphere	MAPTRSEIEALVVRIQEEFLHSPAVRMTLNQLALRVDASLVLCKAILRVLVDAKVIAEAPGGAYQRFYPHPARASRGFAA*
Ga0070675_1017811551	3300005354	Miscanthus Rhizosphere	MAPTRFEIEALVVRIQEEFLQSPRVRLTLNQIACRVDASLVLCKAILRVLLDARVIAEAPGGVYQRFVPASSRSYAA*
Ga0070675_1018545002	3300005354	Miscanthus Rhizosphere	EIEALVMQIQEQFLRTPAVRLTLNQIARQANASVGLCKAVLRVLVDARVLAQTPGGVYERFFPQAAGMPRASRASAA*
Ga0070671_1000028482	3300005355	Switchgrass Rhizosphere	MTPNRSQIEALVMQIQEEFLRRPAVRLTLTDIARRMDASLVLCKAVLRVLVDARVLAETPGGVYERFFPLAARTSRASAA*
Ga0070674_1005762331	3300005356	Miscanthus Rhizosphere	MTPTRSEIEALVMQIQEEFLRRPAVRLTLNELARRMDASLVLCKAVLRVLVDARVLAQTPGGVYERFFPQAAGMQRASRASAA*
Ga0070700_1015666392	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	GQLVLEDSEMTPNRSEIEALVMRIQEEFLRTPAVRLTLNQIARQVNASVGLCKAVLRVLVDARVLAQTPGGVYERFFPQASGFQRTSRASAA*
Ga0070685_100520823	3300005466	Switchgrass Rhizosphere	MAPNRSQIEALVMQIQEEFLRRPAVRLTLNEIARRMDASLVLCKAVLRVLVDARVLAEAPGGAYERFFPYAAAAPRTARAS
Ga0070707_1015778711	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTPTRSDIEALAMQIQEEFLRRPAVRLTLNEIARHMDASLVLCKAVLRVLVDAGVLAEVPGGAYERFYPYAAAEPRESRASAA*
Ga0070686_1001388923	3300005544	Switchgrass Rhizosphere	DMEMTPTRAEIEGLVMDIQQQFLRTPAVRLTLNQIARRVNSSVSLCKAVLRVLVDARVLAETPGGAYARYYPQPVALPRSARASAA*
Ga0070686_1014143441	3300005544	Switchgrass Rhizosphere	EDSEMTPNRSEIEALVMRIQEEFLRTPAVRLTLNQIARQVNASVGLCKAVLRVLVDARVLAQTPGGVYERFFPQASGFQRTSRASAA*
Ga0068857_1017086011	3300005577	Corn Rhizosphere	VALHKTARQLLSRKGRRDEMTPTRADIEGLVMRIQEEFLRRPTVRLTLHQIAYRLDASLVLCKAVLRVLVDAKVLAQTPGGVYERFFPLATARASRASAA*
Ga0070702_1010130261	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MTPNRSQIEALVMQIQEEFLRRPAVRLTLTDIARRMDASLVLCKAVLRVLVDARVLAETPGGVYERFF
Ga0068852_1028314372	3300005616	Corn Rhizosphere	PTRADIEGLVMRIQEEFLRRPTVRLTLDQIAYRLDASLVLCKAVLRVLVDAKVLAQTPGGVYERFFPLATARASRASAA*
Ga0068859_1000574943	3300005617	Switchgrass Rhizosphere	MTPTRAEIEGLVMDIQQQFLRTPAVRLTLNQIARRVNSSVSLCKAVLRVLVDARVLAETPGGAYARYYPQPAALTRSARASAA*
Ga0068859_1004657222	3300005617	Switchgrass Rhizosphere	MAPTRSEIEALVVRIQEEFLQARAVRLTLEQIVKRLNASAGLCKAVLRVLVDARVLAETPGGVYERFFPHAGRTSRGFAA*
Ga0068859_1026593331	3300005617	Switchgrass Rhizosphere	MTPNRSEIEAVVMQIQAQFMRTPAVRLTLNQIARQVNASVGLCKAVLRVLVDARVLAQTPGGVYERFFPQAAAMPRASRASAA*
Ga0068861_1005845752	3300005719	Switchgrass Rhizosphere	MAPNRSQIEALVMQIQEEFLRRPAVRLTLNELARRMDASLVLCKAVLRVLVDARVLAQTPGGVYERFFPQAAGMPRASRASAA*
Ga0068851_100088045	3300005834	Corn Rhizosphere	MAPARSEIEALVVQIQEEFLQAPAVRLTLEQIVRRLNASAGLCKAVLRVLVDSRVLAETPGGVYQRFFPHGTPSRVYAA*
Ga0074470_105225352	3300005836	Sediment (Intertidal)	MAPTRSEIEALVMRIQEEFLRRSAVRLTLNEVARRMDASLVLCKAVLRLLVDARVVAQAQGGAYERFFPYAAAAPRTARASAA*
Ga0068862_1018175762	3300005844	Switchgrass Rhizosphere	DSEMTPTRFEIEALVMRIQDEFLRTSAVRMTLEQIARRLDASVGLCKAVLRLLVDARVLAETPGGVYERFFPHGAARASAA*
Ga0097621_1005603582	3300006237	Miscanthus Rhizosphere	MTPTRSEIEALVMRIQEEFLRTPAVRLTLAQIAQRLNASASLCKAVVRVLVDARVLAETPGGVYARFFPQASAMQRPSRASAA*
Ga0097621_1013594571	3300006237	Miscanthus Rhizosphere	AARQLLYSRQLVLEDRPMTPTRSEIEALVMKIQEEFLRSPAVRLTLAQIARRLNASASLCKAVVRVLVDARVLAETPGGVYARFFPHAAAMPRASRASAA*
Ga0068871_1005743052	3300006358	Miscanthus Rhizosphere	MTPTRSEIEALVMQIQEEFLRTPAVRLTLAQIARRLNASANLCKAVLRVLVDARVVAETPGGVYARFFPQTTAMPRASRASAA*
Ga0079222_110643331	3300006755	Agricultural Soil	MAAKRSEIEALVVSIQQEFLQSPAVRLTLNQIAQRVDASLVMCKAVLRVLVDARVLTQTPAGEFQRF
Ga0079220_104383191	3300006806	Agricultural Soil	MTPTRYEIEALVMRIQDEFLRTTAVRMTLEQIARRLDASVGLCKAILRVLVDARVLAETPGGVYERFFPQGAAMPRASRASAA*
Ga0075428_1003259552	3300006844	Populus Rhizosphere	MTPKRSQIEMLVVRIQQVFLSGRAVRLTLNQIARRVDASARLCQAVVRLLVDARVLAETPGGAYERFFPQSAVLRPSRASAA*
Ga0075428_1008019142	3300006844	Populus Rhizosphere	MTPTRFEIEALVMRIQDEFLRTSPVRMTLQQIARRLDASVSLCKAVLRLLVDARVLAETPGGVYERFFPHGAARASAA*
Ga0079217_101230592	3300006876	Agricultural Soil	MKATRSDIEALVVSIQQEFLQAPAVRLTLTQIAQRVDASLVLCKAILRVLVDARVLTETATGEYRRFFPHVRESRSAA*
Ga0068865_1011071532	3300006881	Miscanthus Rhizosphere	MAPNRSQIEALVMQIQEEFLRRPAVRLTLNEIARRMDASLVLCKAVLRVLVDARVLAEAPGGAYERFFPYAAAAPRTARASAA*
Ga0079216_101063952	3300006918	Agricultural Soil	MAPTRSEIEMLVVRIQQEFLRAPAVRLTLDEIARRLNASIGLCKAVVRVLVDARVLAETPGGVYARYFPRASRSAA*
Ga0079218_100366754	3300007004	Agricultural Soil	MAPTRSEIEMLVVRIQQEFLQAPAVRLTLDEIARRLNASIGLCKAVVRVLVDARVLAETPGGVYARYFPRASRSAA*
Ga0111539_108376831	3300009094	Populus Rhizosphere	MTPTRFEIEALVMRIQDEFLRTSAVRMTLEQIARRLDASVGLCKAVLRVLVDARVLAETPGGVYERFFPHGAARASAA*
Ga0111539_113530421	3300009094	Populus Rhizosphere	MAPNRSQIEALVMQIQEEFLRRPAVRLTLSEIARRMDASLVLCKAVLRVLVDARVLAEAPGGAYERFFPYAAAAPRTARASAA*
Ga0105245_104273742	3300009098	Miscanthus Rhizosphere	MAPARSEIEALVVQIQEEFLQAPAVRLTLEQIVRRLNASAGLCKAVLRVLVDSHVLAETPGGVYQRFFPHGTPSRVYAA*
Ga0111538_136612012	3300009156	Populus Rhizosphere	MTPTRFEIEALVMRIQDEFLRTSAVRMTLEQIARRLDASVGLCKAVLRVLVDARVLAETPGGVYERFF
Ga0105248_104371782	3300009177	Switchgrass Rhizosphere	MEMTPTRAEIEGLVMDIQQQFLRTPAVRLTLNQIARRVNSSVSLCKAVLRVLVDARVLAETPGGAYARYYPQPVALTRSARASAA*
Ga0105249_116110692	3300009553	Switchgrass Rhizosphere	EMTPTRAEIEGLVMDIQQQFLRTPAVRLTLNQIARRVNSSVSLCKAVLRVLVDARVLAETPGGAYARYYPQPVALTRSARASAA*
Ga0105249_122248412	3300009553	Switchgrass Rhizosphere	RSQIEALVMQIQEEFLRRPAVRLTLNEIARRMDASLVLCKAVLRVLVDARVLAEAPGGAYERFFPYAAAAPRTARASAA*
Ga0105340_10840082	3300009610	Soil	VEKLVADDSSLEDGSMAPTRSEIESLVIRIQQVFLSGHTVRLTLNQIARRADASVGLCKAVLRVLVDARVLAQTPRGVYERFLPHTARASRSAA*
Ga0105246_101006943	3300011119	Miscanthus Rhizosphere	MEMTPTRAEIEGLVMDIQQQFLRTPAVRLTLNQIARRVNSSVSLCKAVLRVLVDARVLAETPGGAYARYYPQPVALPRSARASAA*
Ga0105246_111603922	3300011119	Miscanthus Rhizosphere	LHKTARQLLSRKGRRDEMTPTRADIEGLVMRIQEEFLRRPTVRLTLHQIAYRLDASLVLCKAVLRVLVDAKVLAQTPGGVYERFFPLATARASRASAA*
Ga0137325_10361972	3300011415	Soil	MAPTRSGIETLVVLIQQEFLQAPAVRLTLDEIARRLNASIGLCKAVVRVLVDARVLAETPGGVYARYFPRASRSAA*
Ga0150985_1186307801	3300012212	Avena Fatua Rhizosphere	MAPTRFEIEALVVQIQAEFLQAPALRLTLEQIVRLLNASAGLCKAVLRVLVDARVLAQTPGGIYQRFFPHGMPSRAYAA*
Ga0157375_111354682	3300013308	Miscanthus Rhizosphere	MAPNRSQIEALVMQIQEEFLRRPAVRLTLNEIARRMDASLVLCKAVLRVLVDARVLAETPGGVYERFFPLAARTSRASAA*
Ga0163163_101985241	3300014325	Switchgrass Rhizosphere	MEMTPTRAEIEGLVMDIQQQFLRTPAVRLTLNQIARRVNSSVSLCKAVLRVLVDARVLAETPGGAYARYYPQPAALTRSARASA
Ga0157377_105033101	3300014745	Miscanthus Rhizosphere	HKAARQLLYSRQLVLEDRPMTPTRSEIEALVMKIQEEFLRSPAVRLTLAQIARRLNASASLCKAVVRVLVDARVLAETPGGVYARFFPHAAAMPRASRASAA*
Ga0157379_110576591	3300014968	Switchgrass Rhizosphere	MEMTPTRAEIEGLVMDIQQQFLRTPAVRLTLNQIARRVNSSVSLCKAVLRVLVDARVLAETPGGAYARYYPQPAALTRSARASAA*
Ga0157376_105074381	3300014969	Miscanthus Rhizosphere	ASCFWSGQLVVEDSEMTPNRSQIEALVMQIQEEFLRRPAVRLTLTDIARRMDASLVLCKAVLRVLVDARVLAETPGGVYERFFPLAARTSRASAA*
Ga0132258_114865672	3300015371	Arabidopsis Rhizosphere	VEDSEMTPNRSQIEALVMQIQEEFLRRPAVRLTLTDIARRMDASLVLCKAVLRVLVDARVLAETPGGVYERFFPLASARTSRASAA*
Ga0163161_115061622	3300017792	Switchgrass Rhizosphere	MTPNRSQIEALVMQIQEEFLRRPAVRLTLTDIARRMDASLVLCKAVLRVLVDARVLAQTPGGVYERFFPQAAGMPRASRASAA
Ga0184624_104801641	3300018073	Groundwater Sediment	MTPNRSEIEALVMKIQAQFLRTPAVRLTLNQIARQMNVSVSLCKAVLRVLVDARVLAQTPGGVYERFFPQAAGMPRASR
Ga0190270_111638622	3300018469	Soil	MAPTRSEIETLVVLIQQEFLQAPAVRLTLDEIARRLNASIGLCKAVVRVLVDARVLAETPGGVYARYFPRASRSAR
Ga0190274_117854002	3300018476	Soil	MTPTRSEIETLVMQIQEQFLRTPAVRLTLNQIARQVNGSVGLCKAVLRVLVDARVLAQTPGGVYERFFPQGATMQRASRASAA
Ga0190271_109079822	3300018481	Soil	ETLVVLIQQEFLQAPAVRLTLDEIARRLNASIGLCKAVVRVLVDARVLAETPGGVYARYFPRASRSAA
Ga0066669_121207651	3300018482	Grasslands Soil	MTPNRSEIEALVMQIQEEFLRTPAVRLTLAQIARRLNASANLCKAVLRVLVDARVLAETPGGAYARFFPHAASRASAA
Ga0207697_105491802	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTPNRSQIEALVMQIQEEFLRRPAVRLTLTDIARRMDASLVLCKAVLRVLVDARVLAETPGGVYERFFPQASAFQRTSRASAA
Ga0207682_104932142	3300025893	Miscanthus Rhizosphere	MTPTRSEIEALVMQIQEEFLRRPAVRLTLNELARRMDASLVLCKAVLRVLVDARVLAQTPGGVYERFFPQAAGMPRASRASAA
Ga0207688_101461892	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MAPNRSQIEALVMQIQEEFLRRPTVRLTLHQIAYRLDASLVLCKAVLRVLVDAKVLAQTPGGVYERFFPLATARASRASAA
Ga0207643_100322312	3300025908	Miscanthus Rhizosphere	MTPTRSEIEALVMKIQEEFLRSPAVRLTLAQIARRLNASASLCKAVVRVLVDARVLAETPGGVYARFFPHAAAMPRASRASAA
Ga0207643_103689012	3300025908	Miscanthus Rhizosphere	MAPTRFEIEALVVRIQEEFLQSPRVRLTLNQIACRVDASLVLCKAILRVLLDARVIAEAPGGVYQRFVPASSRSYAA
Ga0207662_101494083	3300025918	Switchgrass Rhizosphere	MTPTRADIEGLVMRIQEEFLRRPTVRLTLHQIAYRLDASLVLCKAVLRVLVDAKVLAQTPGGVYERFFPLATAHASRASAA
Ga0207681_111192112	3300025923	Switchgrass Rhizosphere	MTPNRSEIEALVMRIQEEFLRTPAVRLTLNQIARQVNASVGLCKAVLRVLVDARVLAQTPGGVYERFFPQASGFQRTSRASAA
Ga0207694_100062579	3300025924	Corn Rhizosphere	MAPARSEIEALVVQIQEEFLLAPAVRLTLEQIVRRLNASAGLCKAVLRVLVDSHVLAETPGGVYQRFFPHGTPSRVYAA
Ga0207659_101176323	3300025926	Miscanthus Rhizosphere	MTPNRSQIEALVMQIQEEFLRRPAVRLTLTDIARRMDASLVLCKAVLRVLVDARVLAETPGGVYERFFPLASARTSRASAA
Ga0207659_102773451	3300025926	Miscanthus Rhizosphere	MAPNRSQIEALVMQIQEEFLRRPAVRLTLNEIARRMDASLVLCKAVLRVLVDARVLAEAPGGAYERFFPYAAAAPRTARASAA
Ga0207659_107351632	3300025926	Miscanthus Rhizosphere	VGLHKAARALLCDVDSIFVEDSEMAPTRSEIEALVVRIQEEFLHSPAVRMTLNQLALRVDASLVLCKAILRVLVDAKVIAEAPGGAYQRFYPHPARASRGFAA
Ga0207687_105342432	3300025927	Miscanthus Rhizosphere	MAPARSEIEALVVQIQEEFLLAPAVRLTLEQIVRRLNASAGLCKAVLRVLVDSRVLAETPGGVYQRFFPHGTPSRVYAA
Ga0207644_100711883	3300025931	Switchgrass Rhizosphere	MTPNRSQIEALVMQIQEEFLRRPAVRLTLTDIARRMDASLVLCKAVLRVLVDARVLAETPGGVYERFFPLAARTSRASAA
Ga0207670_102704332	3300025936	Switchgrass Rhizosphere	MAPTRSEIEALVVRIQAEFLQAPAVRLTFEQVVKRLNASAGLCKAVLRVLVDARVLAETPGGVYERFFPHAGRTSRGFAA
Ga0207670_102803762	3300025936	Switchgrass Rhizosphere	MTPTRADIEGLVMRIQEEFLRRPTVRLTLDQIAYRLDASLVLCKAVLRVLVDAKVLAQTPGGVYERFFPLATARASRASAA
Ga0207669_103557772	3300025937	Miscanthus Rhizosphere	MTPTRSEIEALVMQIQEEFLRRPAVRLTLNELARRMDASLVLCKAVLRVLVDARVLAQTPGGVYERFFPQAAGMQRASRASAA
Ga0207704_103569212	3300025938	Miscanthus Rhizosphere	MTPTRSEIEALVMQIQEEFLRRPAVRLTLNELARRMDASLVLCKAVLRVLVDARVLAEAPGGAYERFFPYAAAAPRTARASAA
Ga0207691_106269902	3300025940	Miscanthus Rhizosphere	MTPTRADIEGLVMRIQEEFLRRPTVRLTLHQIAYRLDASLVLCKAVLRVLVDARVVAEMPGGVYARFFPQATAMPRTSRASAA
Ga0207711_106939811	3300025941	Switchgrass Rhizosphere	MTPTRAEIEGLVMDIQQQFLRTPAVRLTLNQIARRVNSSVSLCKAVLRVLVDARVLAETPGGAYARYYPQPAALPRSARASAA
Ga0207689_106033711	3300025942	Miscanthus Rhizosphere	MTPNRSEIEALVMQIQAQFLRTPAVRLTLNQIARQMNASVGLCKAVLRVLVDARVLAQTPGGVYERFFPQAAAMPRASRASAA
Ga0207677_120571611	3300026023	Miscanthus Rhizosphere	MTPTRADIEGLVMRIQEEFLRRPTVRLTLDQIAYRLDASLVLCKAVLRVLVDAKVLAQTPGGVYERFFPL
Ga0207703_101146962	3300026035	Switchgrass Rhizosphere	MTPTRAEIEGLVMDIQQQFLRTPAVRLTLNQIARRVNSSVSLCKAVLRVLVDARVLAETPGGAYARYYPQPAALTRSARASAA
Ga0207678_102796842	3300026067	Corn Rhizosphere	MTPNRSEIEALVMHIQEEFMRTPAVRMTLNQIARRLNASAGLCKAVLSVLVDARVLAQTPGGVYERFYPRPVMLPRAARASAA
Ga0207641_100819872	3300026088	Switchgrass Rhizosphere	MTPNRSQIEALVMQIQEEFLRRPAVRLTLNEIARRMDASLVLCKAVLRVLVDARVLAETPGGVYERFFPLAARTSRASAA
Ga0207676_100355914	3300026095	Switchgrass Rhizosphere	MTPTRAEIEGLVMDIQQQFLRTPAVRLTLNQIARRVNSSVSLCKAVLRVLVDARVLAETPGGAYARYYPQPVALTRSARASAA
Ga0207676_101343553	3300026095	Switchgrass Rhizosphere	MTPTRSEIEALVMKIQEEFLRSPAVRLTLAQIARRLNASASLCKAVVRVLVDARVLAETPGGVYAQFFPHTAAMPRASRASAA
Ga0207675_1012182632	3300026118	Switchgrass Rhizosphere	MAPNRSQIEALVMQIQEEFLRRPAVRLTLNELARRMDASLVLCKAVLRVLVDARVLAQTPGGVYERFFPQAAGMPRASRASAA
Ga0209486_100018833	3300027886	Agricultural Soil	MAPTRSEIEMLVVRIQQEFLQAPAVRLTLDEIARRLNASIGLCKAVVRVLVDARVLAETPGGVYARYFPRASRSAA
Ga0268265_105884172	3300028380	Switchgrass Rhizosphere	MAPTRSEIEALVVRIQEEFLQARAVRLTLEQIVKRLNASAGLCKAVLRVLVDARVLAETPGGVYERFFPHAGRTSRGFAA
Ga0307503_101912391	3300028802	Soil	MTPTRSEIEALVMQIQAEFLRTPAVRLTLAQIARRLNASANLCKAVLRVLVDARVVAETPGGVYARFFPQATAMPRASRASAA
Ga0307281_101237662	3300028803	Soil	MTPTRSEIEALVMQIQEEFLRTPAVRLTLAQIARRLNASANLCKAVLRVLVDARVVAETPGGVYARFFPQAAAMPRASRASAA
Ga0310888_105150082	3300031538	Soil	MTPTRFEIEALVMRIQDEFLRTSAVRMTLEQIARRLDASVGLCKAVLRVLVDARVLAETPGGVYERFFPHGAARASAA
Ga0307468_1005090401	3300031740	Hardwood Forest Soil	MTPTRSEIEALVMQIQEEFLRRPAVRLTLNELARRMDASLVLCKAVLRVLVDARVLAQTPGGVYERFFP
Ga0310904_107682102	3300031854	Soil	MTPTRYEIEALVMRIQDEFLRTTAVRMTLEQIARRLDASVGLCKAVLRVLVDSRVLAETPGGVYERFFPHGASRASAA
Ga0307412_103473892	3300031911	Rhizosphere	MKATRSEIEALVVSIQQEFLQAPAVRLTLTQIAQRVDASLVLCKAVLRVLVDARVLTETTTGEYRRFFPHVRESRSAA
Ga0310906_103030062	3300032013	Soil	TRFEIEALVMRIQDEFLRTSAVRMTLEQIARRLDASVGLCKAVLRVLVDARVLAETPGGVYERFFPHGAARASAA
Ga0315910_103210441	3300032144	Soil	MTPTRFEIEALVMRIQDEFLRTSTVRMTLEQIARRLDASVGLCKAVLRLLVDARVLAETPGGVYERFFPHGAARASAA
Ga0315912_100826102	3300032157	Soil	MTPTRYEIEGLVMRIQDEFLRSSAVRMTLEQIARRLDASVGLCKAVLRVLVDSRVLAETPGGVYERFFPHGASRASAA
Ga0364937_040141_465_749	3300034113	Sediment	VEKLVADDSSLEDGSMAPTRSEIESLVIRIQQVFLSGHTVRLTLNQIARRADASVGLCKAVLRVLVDARVLAQTPRGVYERFLPHTARASRSAA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F085839

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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