Metagenome / Metatranscriptome Family F085889

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F085889
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	94 residues
Representative Sequence	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERRSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLAMGSENE
Number of Associated Samples	90
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	72.48 %
% of genes near scaffold ends (potentially truncated)	22.52 %
% of genes from short scaffolds (< 2000 bps)	93.69 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (71.171 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (21.622 % of family members)
Environment Ontology (ENVO)	Unclassified (22.523 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.153 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.91% β-sheet: 0.00% Coil/Unstructured: 43.09%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF13614	AAA_31	18.92
PF01656	CbiA	11.71
PF13358	DDE_3	3.60
PF10263	SprT-like	0.90
PF00271	Helicase_C	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.17 %
All Organisms	root	All Organisms	28.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.17 %
cellular organisms	root	All Organisms → cellular organisms	28.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.17 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.17 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	23.42 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.90 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.17 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	23.42 %
Candidatus Hydrogenedentes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes	0.90 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.17 %
Candidatus Poribacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria	23.42 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.90 %
unclassified Candidatus Hydrogenedentes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.17 %
unclassified Candidatus Poribacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria	23.42 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.90 %
Candidatus Hydrogenedentes bacterium ADurb.Bin179	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium ADurb.Bin179	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.17 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	23.42 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.90 %
Candidatus Hydrogenedentes bacterium ADurb.Bin179	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium ADurb.Bin179	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.17 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	23.42 %
Zavarzinella	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella	0.90 %
Candidatus Hydrogenedentes bacterium ADurb.Bin179	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium ADurb.Bin179	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.17 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	23.42 %
Zavarzinella formosa	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → Zavarzinella formosa	0.90 %
Candidatus Hydrogenedentes bacterium ADurb.Bin179	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium ADurb.Bin179	0.90 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100423717	Not Available	591	Open in IMG/M
3300000955\|JGI1027J12803_101069157	Not Available	674	Open in IMG/M
3300001305\|C688J14111_10275671	Not Available	530	Open in IMG/M
3300001431\|F14TB_100780878	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1491	Open in IMG/M
3300001686\|C688J18823_10952393	Not Available	545	Open in IMG/M
3300002090\|JGI24806J26614_1009256	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1652	Open in IMG/M
3300002568\|C688J35102_119449486	Not Available	697	Open in IMG/M
3300002568\|C688J35102_119915055	Not Available	813	Open in IMG/M
3300004081\|Ga0063454_101020686	Not Available	667	Open in IMG/M
3300004081\|Ga0063454_101972571	Not Available	515	Open in IMG/M
3300004153\|Ga0063455_101355816	Not Available	546	Open in IMG/M
3300005179\|Ga0066684_11122655	Not Available	502	Open in IMG/M
3300005289\|Ga0065704_10612432	Not Available	601	Open in IMG/M
3300005289\|Ga0065704_10774648	Not Available	533	Open in IMG/M
3300005294\|Ga0065705_10135531	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	2304	Open in IMG/M
3300005294\|Ga0065705_10327730	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	997	Open in IMG/M
3300005294\|Ga0065705_11097888	Not Available	523	Open in IMG/M
3300005332\|Ga0066388_101168660	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1312	Open in IMG/M
3300005445\|Ga0070708_101765548	Not Available	574	Open in IMG/M
3300005454\|Ga0066687_10648084	Not Available	628	Open in IMG/M
3300005559\|Ga0066700_10994573	Not Available	552	Open in IMG/M
3300005575\|Ga0066702_10249384	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300005764\|Ga0066903_100550213	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1979	Open in IMG/M
3300005764\|Ga0066903_108418065	Not Available	526	Open in IMG/M
3300006032\|Ga0066696_10135927	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Zavarzinella → Zavarzinella formosa	1519	Open in IMG/M
3300006049\|Ga0075417_10307817	Not Available	770	Open in IMG/M
3300006194\|Ga0075427_10038896	Not Available	797	Open in IMG/M
3300006844\|Ga0075428_101018048	Not Available	877	Open in IMG/M
3300006845\|Ga0075421_100783534	Not Available	1099	Open in IMG/M
3300006845\|Ga0075421_101092347	Not Available	897	Open in IMG/M
3300006845\|Ga0075421_101171781	Not Available	859	Open in IMG/M
3300006847\|Ga0075431_100750404	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	951	Open in IMG/M
3300006871\|Ga0075434_101019114	Not Available	842	Open in IMG/M
3300006876\|Ga0079217_10071926	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1467	Open in IMG/M
3300006880\|Ga0075429_101272969	Not Available	641	Open in IMG/M
3300006880\|Ga0075429_101663045	Not Available	555	Open in IMG/M
3300006918\|Ga0079216_10285154	Not Available	967	Open in IMG/M
3300006969\|Ga0075419_11382156	Not Available	525	Open in IMG/M
3300007004\|Ga0079218_10143191	Not Available	1731	Open in IMG/M
3300007255\|Ga0099791_10366226	Not Available	692	Open in IMG/M
3300007258\|Ga0099793_10620796	Not Available	542	Open in IMG/M
3300009090\|Ga0099827_10117449	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	2137	Open in IMG/M
3300009094\|Ga0111539_10273552	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1966	Open in IMG/M
3300009100\|Ga0075418_10149373	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	2487	Open in IMG/M
3300009100\|Ga0075418_11012063	Not Available	899	Open in IMG/M
3300009100\|Ga0075418_12061567	Not Available	622	Open in IMG/M
3300009137\|Ga0066709_100592089	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1578	Open in IMG/M
3300009156\|Ga0111538_10217423	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	2422	Open in IMG/M
3300009162\|Ga0075423_12927916	Not Available	523	Open in IMG/M
3300009553\|Ga0105249_11122332	Not Available	857	Open in IMG/M
3300010038\|Ga0126315_10206464	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1186	Open in IMG/M
3300010038\|Ga0126315_10231794	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Hydrogenedentes → unclassified Candidatus Hydrogenedentes → Candidatus Hydrogenedentes bacterium ADurb.Bin179	1122	Open in IMG/M
3300010041\|Ga0126312_10376878	Not Available	1007	Open in IMG/M
3300010042\|Ga0126314_11349934	Not Available	535	Open in IMG/M
3300010044\|Ga0126310_11878153	Not Available	500	Open in IMG/M
3300010045\|Ga0126311_11382841	Not Available	587	Open in IMG/M
3300010047\|Ga0126382_12522131	Not Available	502	Open in IMG/M
3300010335\|Ga0134063_10360014	Not Available	708	Open in IMG/M
3300010358\|Ga0126370_12480840	Not Available	516	Open in IMG/M
3300010360\|Ga0126372_10693624	Not Available	993	Open in IMG/M
3300010362\|Ga0126377_13411913	Not Available	514	Open in IMG/M
3300010366\|Ga0126379_11347656	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300012096\|Ga0137389_10911604	Not Available	754	Open in IMG/M
3300012189\|Ga0137388_11301732	Not Available	666	Open in IMG/M
3300012198\|Ga0137364_10488421	Not Available	925	Open in IMG/M
3300012199\|Ga0137383_10288131	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1202	Open in IMG/M
3300012201\|Ga0137365_10490947	Not Available	903	Open in IMG/M
3300012201\|Ga0137365_10913333	Not Available	640	Open in IMG/M
3300012203\|Ga0137399_11238065	Not Available	628	Open in IMG/M
3300012205\|Ga0137362_10325790	Not Available	1330	Open in IMG/M
3300012207\|Ga0137381_10447575	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1127	Open in IMG/M
3300012212\|Ga0150985_107174041	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1107	Open in IMG/M
3300012212\|Ga0150985_117656851	Not Available	535	Open in IMG/M
3300012356\|Ga0137371_10477478	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	963	Open in IMG/M
3300012357\|Ga0137384_10947658	Not Available	693	Open in IMG/M
3300012469\|Ga0150984_100246993	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1740	Open in IMG/M
3300012469\|Ga0150984_115109078	Not Available	782	Open in IMG/M
3300012532\|Ga0137373_10378957	Not Available	1104	Open in IMG/M
3300012918\|Ga0137396_10341292	Not Available	1108	Open in IMG/M
3300012948\|Ga0126375_10750665	Not Available	766	Open in IMG/M
3300012948\|Ga0126375_11042625	Not Available	669	Open in IMG/M
3300015241\|Ga0137418_10816962	Not Available	696	Open in IMG/M
3300015245\|Ga0137409_10990867	Not Available	678	Open in IMG/M
3300018063\|Ga0184637_10551212	Not Available	662	Open in IMG/M
3300018064\|Ga0187773_10848348	Not Available	585	Open in IMG/M
3300018071\|Ga0184618_10127796	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1022	Open in IMG/M
3300018076\|Ga0184609_10157353	Not Available	1048	Open in IMG/M
3300018082\|Ga0184639_10369360	Not Available	745	Open in IMG/M
3300018422\|Ga0190265_11577959	Not Available	768	Open in IMG/M
3300018465\|Ga0190269_12025049	Not Available	502	Open in IMG/M
3300018466\|Ga0190268_10601228	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	779	Open in IMG/M
3300018476\|Ga0190274_10131286	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	2070	Open in IMG/M
3300018481\|Ga0190271_12275446	Not Available	647	Open in IMG/M
3300020018\|Ga0193721_1097611	Not Available	754	Open in IMG/M
3300026550\|Ga0209474_10144190	All Organisms → cellular organisms → Bacteria	1556	Open in IMG/M
3300027873\|Ga0209814_10207308	Not Available	847	Open in IMG/M
3300027880\|Ga0209481_10210292	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	973	Open in IMG/M
3300027907\|Ga0207428_10842588	Not Available	650	Open in IMG/M
3300027909\|Ga0209382_10378159	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1581	Open in IMG/M
3300027909\|Ga0209382_10804417	Not Available	1000	Open in IMG/M
3300027909\|Ga0209382_11279210	Not Available	745	Open in IMG/M
3300027909\|Ga0209382_11336939	Not Available	724	Open in IMG/M
3300030861\|Ga0102755_1329947	Not Available	507	Open in IMG/M
3300032002\|Ga0307416_101353727	Not Available	818	Open in IMG/M
3300032002\|Ga0307416_101530320	Not Available	773	Open in IMG/M
3300032013\|Ga0310906_10279255	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1056	Open in IMG/M
3300032075\|Ga0310890_10096057	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1844	Open in IMG/M
3300032126\|Ga0307415_102218475	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300033551\|Ga0247830_11157142	Not Available	618	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.47%
Host-Associated	Host-Associated	31.53%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.86%
Plants	Host-Associated → Plants	31.53%
Aquatic	Environmental → Aquatic	3.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.03%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.50%
Sediment	Environmental → Aquatic → Sediment	3.60%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.23%
Loam	Environmental → Terrestrial → Soil → Loam	10.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.60%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.23%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.11%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	7.21%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.60%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.70%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.90%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	21.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.21%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	7.21%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.41%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	5.41%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.60%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.70%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.70%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.80%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.90%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002090	Soil microbial communities from Manhattan, Kansas, USA - Sample 200um MDA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300030861	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 4C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1004237171	3300000364	Soil	MEDRKTRIAKLSERFKPHAGRQKISPKQRERKSYYLDTEITGRLDSDYKTFSHELYPQTVGKSVFMETILEYGLDNLPAIRTLIQAKIEAGAEGE*
JGI1027J12803_1010691571	3300000955	Soil	TRIAKLSERFKPQTGRQKHSPKQRERKSYYLDTEITGRLDSDYKTFSHELYPQTVGKSVFMETILEYGLDNLPAIRTLIQAKIEAGAEGE*
C688J14111_102756712	3300001305	Soil	RINKLSERFKLRPGRPKQSAKERERRSYYLDVEIAERLDKDYKKFNHQAYPHTVSKSVFIETLLEYSLNNLASIQEIITTKAAKEPMDD*
F14TB_1007808782	3300001431	Soil	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETVLEYGLDNLPAISELIQAKLETGSEDE*
C688J18823_109523931	3300001686	Soil	SRINKLSERFKVRPGRPKQSAKERERRSYYLDVEIAERLDKDYKKFNHQAYPHTVSKSVFIETLLEYSLNNLASIQEIITTKAAKEPMDD*
JGI24806J26614_10092562	3300002090	Soil	MDDRKTRIAKLSERFKPQTGRQKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETVLEYGLDNLPAIRELIQAKLEMGSENE*
C688J35102_1194494862	3300002568	Soil	IVMEDRKTRIAKLSERFKPQVNTPKKASRLRQRRSYYLANEIMERIDTQHKEFNHQMYPRTVSKSVFMEAVLEHGLNNLPAVRQIIEGRPEDETSLDESQE*
C688J35102_1199150552	3300002568	Soil	MEDRKTRIAKLSERFKPHADEPKKSPKQRQRKSFYLDIDIMERIDREHKQFNHQTYPHTVGKSVFMEAILEYGMNNLPAVKALIEERSKIEPSSEE*
Ga0063454_1010206861	3300004081	Soil	MDDRKSKINKLSERFKVRPGRPKQSTKERERRSHYLDIEIAERLDKDYKEFNHQAYPHTVSKSVFIETLLEYSLSNLPSIQELITMKAAKETMDE*
Ga0063454_1019725712	3300004081	Soil	MDDRKSRINKLSERFKLRPGRPKQSAKERERRSYYLDVEIAERLDKDYKKFNHQAYPHTVSKSVFIETLLEYSLNNLASIQEIITTKAAKEPMDD*
Ga0063455_1013558162	3300004153	Soil	MEDRKTRIAKLSERFKPHADEPKKSPKQRQRKSFYLDIDIMERIDREHKQFNHQTYPHTVGKSVFMEAILEYGMNNLPAVKALIEERSKSSPHRKSNVF*
Ga0066684_111226551	3300005179	Soil	TRIAKLSERFKPQTGRHKLSPKQRERRSYYLDTAITGRLDRDYKEFSHQLYPQTVGKSVFMETVLEYGLDNLPAIRELIQAKLEMGSENE*
Ga0065704_106124322	3300005289	Switchgrass Rhizosphere	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERRSYYLDTEITERLDKDYKEFSHQSYPQTVGKSVFMETILEYGLDDLPAIRELIQAKLAMGSENE*
Ga0065704_107746481	3300005289	Switchgrass Rhizosphere	MDNRNTRIAKLSERFKKQPGRQKLSPKQRERKSYYLDVEVTSRLDRDYKEFSHQLYPQNVGKSVFMETILEYGLDNLPAIRELIQAKVASDSETE*
Ga0065705_101355312	3300005294	Switchgrass Rhizosphere	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERRSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELVQAKLAMGSENE*
Ga0065705_103277301	3300005294	Switchgrass Rhizosphere	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERKSYYLDTEITERLDRDYKEFSHQSYPQTVGKSVFMETLLEYGLDNLPAISKLIQAKLETGSEDE*
Ga0065705_110978882	3300005294	Switchgrass Rhizosphere	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERRSYYLDTEITERLDRDYKEFSHQSYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLAMGSENE*
Ga0066388_1011686602	3300005332	Tropical Forest Soil	MEDRKTRIAKLSERFKPQSGRQKISPKQRERKSYYLDTEVTGRLDNDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPKIRELIQAKIEAGTEDE*
Ga0070708_1017655481	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDDRKTRIAKLSERFKPQTGRHKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLKMGSENE*
Ga0066687_106480842	3300005454	Soil	MDDRKTRIAKLSERFKPQTGRHKLSPKQRERRSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQA
Ga0066700_109945731	3300005559	Soil	MDDRKTRIAKLSERFKPQTGRHKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSLFMETILEYGLDNLPAIRELIQAKLEMGSENE*
Ga0066702_102493842	3300005575	Soil	MDDRKQRIDKLSERFKERSGRPKLSAKDRARRSFYLDNEIVERLDKDYKKFNHQAYPHTVSKSVFMETILEYGLNNLPSIKELIKEKSHTEPQEA*
Ga0066903_1005502132	3300005764	Tropical Forest Soil	MDDRKTRIAKLSERFKPHTGRQKLTPKQRERKSYYLDTEVTGRLDKDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELILEKLETGSEDE*
Ga0066903_1084180651	3300005764	Tropical Forest Soil	MEDRKTRIAKLSERFKPHTGRPKLSPKQRERRSYYLDTEVTGRLDRDYKEFSHQLYPQTVGKSVFIETIFEYGLDNLQAIRELIQAKLETGSENE*
Ga0066696_101359273	3300006032	Soil	MDDRKQRIDKLSERFKERSGRPKQSAKDRARRSFYLDNEIVERLDKDYKKFNHQAYPHTVSKSVFMETILEYGLNNLPSIKELIKEKSHTEPQEA*
Ga0075417_103078172	3300006049	Populus Rhizosphere	MDDRKTRIAKLSERFKPQTGRQKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELILAKLEMGSENE*
Ga0075427_100388962	3300006194	Populus Rhizosphere	MDDRKTRIAKLSERFKPQTGRQKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELCIGQQFFGHLRT*
Ga0075428_1010180481	3300006844	Populus Rhizosphere	RITKLSERFKPHTGRPKRSSKQRERRSYYLDTEITERLDRDYKEFSHQIYPQTVSKSVFIETIITYGLDNLSAIGEIIKAKSEMGSAD*
Ga0075421_1007835342	3300006845	Populus Rhizosphere	MDDRKTRITKLSERFKPHTGRPKRSSKQRERRSYYLDTEITERLDRDYKEFSHQIYPQTVSKSVFIETIITYGLDNLSAIGEIIKAKSEMGSAD*
Ga0075421_1010923472	3300006845	Populus Rhizosphere	MEDRKTRIAKLSERFKPQTGRQKLSPKQRERKSYYLDTEITGRMDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELILEKLGTDSENE*
Ga0075421_1011717812	3300006845	Populus Rhizosphere	MDDRKTRIAKLSERFKPKTGRQKLSPKQRERKSYYLDTEITGRLDRDHKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELILAKLETDSENE*
Ga0075431_1007504042	3300006847	Populus Rhizosphere	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETVLEYGLDNLPAIRELIQAKL
Ga0075434_1010191141	3300006871	Populus Rhizosphere	MDDRKTRIAKLSERFKPQTGRQKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELILAKLETDSENE*
Ga0079217_100719262	3300006876	Agricultural Soil	MGIVHMDDRKTRITKLSERFKPHAGRPKRSSKQRERRSYYLDTEITERLDRDYKEFSHQVYPQTVSKSVFIETIIAYGLDNLSVVGEIIQAKTDIGSAGE*
Ga0075429_1012729692	3300006880	Populus Rhizosphere	MGASTMDDRKKRITKLSERFKPHTGRPKRSSKQRERRSYYLDTEITERLDRDYKEFSHQVYPQTVSKSVFIETIIAYGLDNLSTIGEIIKAKSEMGSAD*
Ga0075429_1016630451	3300006880	Populus Rhizosphere	YTMDDRKTRIAKLSERFKPQTGRQKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETVLEYGLDNLPAIRELIQAKLEMGSENE*
Ga0079216_102851542	3300006918	Agricultural Soil	MDDRKTRITKLSERFKPHAGRPKRSSKQRERRSYYLDTEITERLDRDYKEFSHQVYPQTVSKSVFIETIIAYGLDNLSAVGEIIQATTDIGSAGE*
Ga0075419_113821562	3300006969	Populus Rhizosphere	MGASTMDDRKKRITKLSERFKPHTGRPKRSSKQRERRSYYLDTEITERLDRDYKEFSHQVYPQTVSKSVFIETIIAYGLDNLSTIGEIIKAKS
Ga0079218_101431912	3300007004	Agricultural Soil	MDERKTRITKLSERFKPHAGRPKRSSKQRERRSYYLDTDITERLDRDYKEFSHQVYPQTVSKSVFIETIIANGLDNLSVVGEIIQAKTDIGSAGE*
Ga0099791_103662261	3300007255	Vadose Zone Soil	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLAMGSENE*
Ga0099793_106207962	3300007258	Vadose Zone Soil	MDDRKTRIAKLSERFKPQTGRQKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLEMGSENE*
Ga0099827_101174492	3300009090	Vadose Zone Soil	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPVIRELIQAKLQMGSENE*
Ga0111539_102735523	3300009094	Populus Rhizosphere	MDDRKTRIAKLSERFKPQTGRQKHSPKMRARRSYYLDMEITDRLDRDHKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLATGSENE*
Ga0075418_101493733	3300009100	Populus Rhizosphere	MGILHMDDRKTRITKLSERFKPHTGRPKRSSKQRERRSYYLDTEITERLDRDYKEFSHQIYPQTVSKSVFIETIITYGLDNLSAIGEIIKAKSEMGSAD*
Ga0075418_110120631	3300009100	Populus Rhizosphere	MDDRKTRIAKLSERFKPQTGRQKLSPKQRERKSYYLDTEITGRLDKDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLEMGSENE*
Ga0075418_120615671	3300009100	Populus Rhizosphere	MDDRKTRIAKLSARFKPQTGRPKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETVLEYGLDNLPAIRELIQAKLAMGSESE*
Ga0066709_1005920892	3300009137	Grasslands Soil	MDDRKTRIAKLSERFKPQTGRHKLSPKQRERRSYYLDTEITERLDKSYKEFSHQLYPQTVGKSVFMETILEYGLDNLQALREIIQAKTEMGSENE*
Ga0111538_102174231	3300009156	Populus Rhizosphere	MDDRKTRIAKLSERFKPQTGRQKHSPKQRERRSYYLDIEITDRLDRDHKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLATGSENE*
Ga0075423_129279161	3300009162	Populus Rhizosphere	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERKSYYLDTEITERLDRDYKEFSHQSYPQTVGKSVFMETILEYGLDNLPAIRELILAKLATDSENE*
Ga0105249_111223322	3300009553	Switchgrass Rhizosphere	MDDRKTRIAKLSERFKPQTGRQKHSPKQRERKSYYLDTEITDRLDRDHKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLATGSENE*
Ga0126315_102064642	3300010038	Serpentine Soil	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERRSYYLDTEITGRLDRDYKEFSHQFYPQTVGKSVFMETILEYGLDNLPAIKELIQAKLAMGSENE*
Ga0126315_102317942	3300010038	Serpentine Soil	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERRSYYLDTEITGRLDTDHKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLAASSENE*
Ga0126312_103768781	3300010041	Serpentine Soil	MDDRKTRIAKLSERFKPQTGRTKLSPKQRERRSYYLDTEITERLDRDYKEFSHQLYPQTVGKSAFMETILAYGLDHLPAIRALIQAKVETGSESE*
Ga0126314_113499341	3300010042	Serpentine Soil	MDDRKTRIAKLSERFKPQTGRQKHSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLAMGSENV*
Ga0126310_118781532	3300010044	Serpentine Soil	VGDYTMDDRKTRIAKLSERFKPQTGRTKLSPKQRERRSYYLDTEITERLDKSYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLGT
Ga0126311_113828411	3300010045	Serpentine Soil	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERRSYYLDTEITGRLDRDYKEFSHQLYPHTVGKSVFMETILEYGLDNLPAIRELIQAKLEMGSENE*
Ga0126382_125221311	3300010047	Tropical Forest Soil	ERFKPQTGRQKLSPKQRERKSYYLDTEITGRLDSDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPQIRALIQAKLEAGSEDE*
Ga0134067_101234711	3300010321	Grasslands Soil	SERFKERSGRPKLSAKDRARRSFYLDNEIVERLDKDYKKFNHQAYPHTVSKSVFMETILEYGLNNLPSIKELIKEKSHTEPQEA*
Ga0134063_103600142	3300010335	Grasslands Soil	MDDRKQRIDKLSERFKERSGRPKQSAKDRARRSFYLDNEIVERLDKDYKKFNHQAYPHTVSKSVFMETILEYGLNNLPSIKELIKEKSDTEPQED*
Ga0126370_124808401	3300010358	Tropical Forest Soil	NREDFTMDDRKTRIAKLSERFKPQTGRQKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELILAKLETGSEDE*
Ga0126372_106936242	3300010360	Tropical Forest Soil	MDDRKTRIAKLSERFKPQTGRQKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRERHWFRVMSATND*
Ga0126377_134119131	3300010362	Tropical Forest Soil	MDERKTRIAKLSERFKPHTGRQKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELILEKLETDSENE*
Ga0126379_113476561	3300010366	Tropical Forest Soil	MDDRKTRIAKLSERFKPQTGRQKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELILAKLETGSEDE*
Ga0137389_109116042	3300012096	Vadose Zone Soil	MDDRKTRIAKLSERFKPQTGRPKLSRKQRERRSYYLDTEITERLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPVIRELIQAKLQMGSENE*
Ga0137388_113017322	3300012189	Vadose Zone Soil	MDDRKTRIAKLSERFKPQTGRHKLSPKQRERRSYYLDTEITGRLDRDYKEFSHQSYPQTVGKSLFMETILEYGLDNLPAIRELIQAKLQMGSENE*
Ga0137364_104884211	3300012198	Vadose Zone Soil	SERFKPQTGRPKLSPKQRERKSYYLDTETTERLDKDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLALGSENE*
Ga0137383_102881311	3300012199	Vadose Zone Soil	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERRSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETVLEYGLDNLPAIRELIQAKLEMGSENE*
Ga0137365_104909471	3300012201	Vadose Zone Soil	MEDRKSRIEKLSERFKPHTGRPKQSLKDRERRSYYLDIVIAERLDKDFKAFNHQVYPNTVSKSVFIETILEYALDNIQAVKEVLKSKSGQEGLSG*
Ga0137365_109133332	3300012201	Vadose Zone Soil	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERRSYYLDIEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLAMGSENE*
Ga0137399_112380651	3300012203	Vadose Zone Soil	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERRSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLAMGSENE*
Ga0137362_103257902	3300012205	Vadose Zone Soil	MDDRKTRIAKLSERFKPQTGRHKLSPKQRERRSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLEMGSENE*
Ga0137381_104475751	3300012207	Vadose Zone Soil	MDDRKTRIAKLSERFKPQTGRHKLSPKQRERRSYYLDTEITERLDKSYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIR
Ga0150985_1071740411	3300012212	Avena Fatua Rhizosphere	MEDRKTRIAKLSERFKPHGDEPKKSPKQRQRRSFYLDVEIMERIDREHKEFNHQTYPHTVGKSVFMEAILEYGMNNLPAVRALIEERSKTEPS
Ga0150985_1079516282	3300012212	Avena Fatua Rhizosphere	MDDRRSRISKLSERFKDRPGRQKQSAKERERRSYYLDVQVSERLDKDYKRFNHQAYPHTVSKSVFIETLLEYGLDNLPSIRELITAKAKKEPLAE*
Ga0150985_1176568511	3300012212	Avena Fatua Rhizosphere	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERRSYYLDTEITERLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIKELIQAKLAMGSENE*
Ga0137371_104774782	3300012356	Vadose Zone Soil	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERKSYYLDTETTERLDKDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKIAMGSE
Ga0137384_109476582	3300012357	Vadose Zone Soil	LSQRFKPQTGRHKLLPKQRERRSYYLDTEITERLDKSYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLEMGSENE*
Ga0150984_1002469932	3300012469	Avena Fatua Rhizosphere	MEDRKTRIAKLSERFKPHGAEPKKSPKQRQRRSFYLDVEIMERIDREHKEFNHQTYPHTVGKSVFMEAILEYGMNNLPAVRALIEERSKTELSSEE*
Ga0150984_1151090781	3300012469	Avena Fatua Rhizosphere	MDDRKSRINKLSERFKVRPGRPKQSAKERERRSYYLDVEIAERLDKDYKKFNHQAYPHTVSKSVFIETLLEYSLNNLASIQEIITTKAAKEPMDD*
Ga0137373_103789572	3300012532	Vadose Zone Soil	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERRRYYLDIKITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLAMGSENE*
Ga0137396_103412922	3300012918	Vadose Zone Soil	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETVLEYGLDNLPAIRELIQAKLAMGSENE*
Ga0126375_107506651	3300012948	Tropical Forest Soil	MEDRKTRIAKLSERFKPQTGRQKLSPKQRERKSYYLDTEITGRLDSDYKEFSHQLYPQTVGKSVFMETLLEYGLNNLPAIRTLIQAKLEAGSEDE*
Ga0126375_110426252	3300012948	Tropical Forest Soil	MDDRKTRIAKLSERFKPQTGRQKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELILAKLGTDSENE*
Ga0137418_108169621	3300015241	Vadose Zone Soil	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERRSYYLDTEITERMDKSYKEFSHQLYPQTVGKSVFIETILEYGLDNLEALREIIQAKLAMGSENE*
Ga0137409_109908671	3300015245	Vadose Zone Soil	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETVLEYGLDNLPAIRELIQAKLAMDSENE*
Ga0184637_105512122	3300018063	Groundwater Sediment	MDDRKTRIAKLSERFKPQTGRPKLSPKLRERRSYYLDTEITERLDKNYKEFSHQLYPQTIGKSVFIETILEYGLDNLQALRE
Ga0187773_108483481	3300018064	Tropical Peatland	KPHTGRPKLSSKERERRSYHLDTSIAERLDKDYKAFSHQLYPQAVSKSVFIETILEYGLDHLQALREIIKAKPETTSEDK
Ga0184618_101277962	3300018071	Groundwater Sediment	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERRSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPTFCE
Ga0184609_101573531	3300018076	Groundwater Sediment	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERRSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETVLEYGLDNLPAIRELIQAKLAMGSENE
Ga0184639_103693602	3300018082	Groundwater Sediment	MDDRKTRIAKLSERFKPQTGRPKLSPKLRERRSYYLDTEITERLDKNYKEFSHQLYPQTIGKSVFIETILEYGLDNLQALREIIQAKLEMGSENE
Ga0190265_115779592	3300018422	Soil	MGIVHMDDRKTRITKLSERFKPHAGRPKRSSKQRERRSYYLDTEITERLDRDYKEFSHQVYPQTVSKSVFIETIIAYGLDNLSAVGEIIQAKTDIGSAGK
Ga0190269_120250491	3300018465	Soil	MMDDRKTRIEKLSERFKPHTGRQKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLAMGSENE
Ga0190268_106012281	3300018466	Soil	MGILHMDDRKTRITKLSERFKPHTGRPKRSSKQRERRSYYLDTEITERLDRDYKEFSHQVYPQTVSKSVFIETIIAYGLDNLSAIGEII
Ga0190274_101312863	3300018476	Soil	MDDRKTRIAKLSERFKPDAGRSKRSAKQRERRSYYLDTEITERLDGGYKEFSHQLYPQTVSKSVFIETIIEYGLDNLSAVGEIIKAKSEMRSAD
Ga0190271_122754461	3300018481	Soil	MDDRKTRIAKLSERFKPHTGRPKRSSKQRERRSYYLDTEITERLDRGYKEFSHQLYPQTVSKSVFIETIIAYGLDNMSVVGEIIQAKTNIGTVNK
Ga0193721_10976111	3300020018	Soil	MDDRKTRIAKLSERFKPQTGRPKLSPKQRERKSYYLDTEITGRLDRDYKEFSHELYPQTVGKSLFMETILEYGLDNLPAIREIIQAKLETGSENE
Ga0209474_101441901	3300026550	Soil	SKFMDDRKQRIDKLSERFKERSGRPKQSAKDRARRSFYLDNEIVERLDKDYKKFNHQAYPHTVSKSVFMETILEYGLNNLPSIKELIKEKSHTEPQEA
Ga0209814_102073082	3300027873	Populus Rhizosphere	MDDRKTRIAKLSERFKPQTGRQKLSPKQRERKSYYLDTEITGRLDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELCIGQQFFGHLRT
Ga0209481_102102921	3300027880	Populus Rhizosphere	MGILHMDDRKTRITKLSERFKPHTGRPKRSSKQRERRSYYLDTEITERLDRDYKDFSHQLYPHTVGKSVFMETILEYGLDNLPAIRELIQAKLATGAENE
Ga0207428_108425881	3300027907	Populus Rhizosphere	MDDRKTRIAKLSERFKPQTGRQKHSPKMRARRSYYLDMEITDRLDRDHKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLATGSENE
Ga0209382_103781592	3300027909	Populus Rhizosphere	MDDRKTRITKLSERFKPHTGRPKRSSKQRERRSYYLDTEITERLDRDYKEFSHQIYPQTVSKSVFIETIITYGLDNLSAIGEIIKAKSEMGSAD
Ga0209382_108044171	3300027909	Populus Rhizosphere	MEDRKTRIAKLSERFKPQTGRQKLSPKQRERKSYYLDTEITGRMDRDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELILEKLGTDSENE
Ga0209382_112792101	3300027909	Populus Rhizosphere	MDDRKTRIAKLSERFKPKTGRQKLSPKQRERKSYYLDTEITGRLDRDHKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELILAKLETDSENE
Ga0209382_113369391	3300027909	Populus Rhizosphere	MDDRKTRIAKLSERFKPQTGRQKLSPKQRERKSYYLDTEITGRLDKDYKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLEMGSENE
Ga0102755_13299472	3300030861	Soil	MDDRKQRIDKLSERFKERSGRPKQSAKDRARRSFYLDNEIVERLDKDYKKFNHQAYPHTVSKSVFMETILEYGLNNLPSIKE
Ga0307416_1013537271	3300032002	Rhizosphere	MEDRKTRIAKLSERFKPQTGRPKLSPKQRERKSYYLDTETTERLDRDYKEFSHQFYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLATGSENE
Ga0307416_1015303202	3300032002	Rhizosphere	MDDRKTRIAKLSERFKPQTGRQKQSPKQRERKSYYLDTEITDRLDRDHKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELIQAKLATGSENE
Ga0310906_102792551	3300032013	Soil	MDDRKTRIAKLSERFKPQTGRQKHSPKMRARRSYYLDMEITDRLDRDHKEFSHQLYPQTVGKSVFMETILEYGLDNLPAIRELLQAKLAAGSENE
Ga0310890_100960572	3300032075	Soil	MDDRKTRIAKLSERFKPQTGRQKHSPKMRARRSYYLDMEITDRLDRDHKEFSHQLYPQTVGKSVFMETLLEYGLDNLPAIRELIQAKLATGSENE
Ga0307415_1022184751	3300032126	Rhizosphere	MDDRKTRIAKLSERFKPQTGRQKQSPKQRERKSYYLDTEITERLDKDYKEFSHQFYPQTVGKSVFMETILEYGLDNLPAIKELIQAKLATGSENE
Ga0247830_111571421	3300033551	Soil	MGILHMDDRKTRITKLSERFKPHTGRPKRSSKQRERRSYYLDTEITERLDRDYKEFSHQVYPQTVSKSVFIETIIAYGLDNLSAIGELIKAKSETGSAD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085889

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences