Metagenome Family F086011

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086011
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	65 residues
Representative Sequence	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPSPVRLGNKCFYDREAIESKILATCQD
Number of Associated Samples	76
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.38 %
% of genes near scaffold ends (potentially truncated)	37.84 %
% of genes from short scaffolds (< 2000 bps)	77.48 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.658 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.324 % of family members)
Environment Ontology (ENVO)	Unclassified (24.324 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.550 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.26% β-sheet: 18.28% Coil/Unstructured: 49.46%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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SCOP family	SCOP domain	Representative PDB	TM-score
a.6.1.3: DNA-binding N-terminal domain of transcription activators	d1q06a_	1q06	0.66459
a.6.1.0: automated matches	d2zhga_	2zhg	0.65498
a.6.1.4: Dachshund-homology domain	d1l8ra1	1l8r	0.63743
a.6.1.0: automated matches	d4ua1a_	4ua1	0.61701
a.6.1.3: DNA-binding N-terminal domain of transcription activators	d1r8da_	1r8d	0.61173

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF10263	SprT-like	5.45
PF09250	Prim-Pol	4.55
PF01743	PolyA_pol	4.55
PF13148	DUF3987	3.64
PF04029	2-ph_phosp	1.82
PF13481	AAA_25	0.91
PF12860	PAS_7	0.91
PF13426	PAS_9	0.91
PF05869	Dam	0.91
PF13185	GAF_2	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0617	tRNA nucleotidyltransferase/poly(A) polymerase	Translation, ribosomal structure and biogenesis [J]	4.55
COG2045	Phosphosulfolactate phosphohydrolase or related enzyme	Coenzyme transport and metabolism [H]	3.64

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
All Organisms	root	All Organisms	42.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
cellular organisms	root	All Organisms → cellular organisms	41.44 %
Viruses	superkingdom	All Organisms → Viruses	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	41.44 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.84 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.90 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.90 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.23 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.90 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.90 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.71 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4.50 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.90 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.90 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.90 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.71 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.70 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.80 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.90 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	0.90 %
Stephanstirmvirinae	subfamily	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Stephanstirmvirinae	0.90 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.90 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.71 %
Acidisoma	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma	1.80 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	1.80 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.90 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	0.90 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.90 %
Justusliebigvirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Stephanstirmvirinae → Justusliebigvirus	0.90 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.71 %
Rhodospirillaceae bacterium BRH_c57	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium BRH_c57	1.80 %
unclassified Acidisoma	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma → unclassified Acidisoma	1.80 %
unclassified Reyranella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella	0.90 %
Gemmata	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata	0.90 %
Cyclobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae	0.90 %
Justusliebigvirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Stephanstirmvirinae → Justusliebigvirus	0.90 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.71 %
Acidisoma sp. S159	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma → unclassified Acidisoma → Acidisoma sp. S159	1.80 %
Rhodospirillaceae bacterium BRH_c57	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium BRH_c57	1.80 %
Reyranella sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	0.90 %
Gemmata palustris	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → Gemmata palustris	0.90 %
Cyclobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae	0.90 %
Justusliebigvirus	genus	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Stephanstirmvirinae → Justusliebigvirus	0.90 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101331795	Not Available	610	Open in IMG/M
3300002914\|JGI25617J43924_10274345	Not Available	575	Open in IMG/M
3300004080\|Ga0062385_10305305	Not Available	914	Open in IMG/M
3300004082\|Ga0062384_100577087	Not Available	758	Open in IMG/M
3300004092\|Ga0062389_100953391	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Stephanstirmvirinae → Justusliebigvirus	1042	Open in IMG/M
3300005177\|Ga0066690_10178653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1406	Open in IMG/M
3300005179\|Ga0066684_10080389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1952	Open in IMG/M
3300005434\|Ga0070709_10290178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	1192	Open in IMG/M
3300005434\|Ga0070709_11106370	Not Available	634	Open in IMG/M
3300005435\|Ga0070714_100995443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	816	Open in IMG/M
3300005435\|Ga0070714_102440877	Not Available	508	Open in IMG/M
3300005436\|Ga0070713_100165593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1976	Open in IMG/M
3300005436\|Ga0070713_100345392	Not Available	1380	Open in IMG/M
3300005436\|Ga0070713_102058612	Not Available	554	Open in IMG/M
3300005437\|Ga0070710_11292952	Not Available	542	Open in IMG/M
3300005439\|Ga0070711_100063019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2586	Open in IMG/M
3300005439\|Ga0070711_100194552	Not Available	1561	Open in IMG/M
3300005439\|Ga0070711_100260550	All Organisms → cellular organisms → Bacteria → Proteobacteria	1364	Open in IMG/M
3300005439\|Ga0070711_101824543	Not Available	534	Open in IMG/M
3300005471\|Ga0070698_102219076	Not Available	503	Open in IMG/M
3300005536\|Ga0070697_100232074	Not Available	1574	Open in IMG/M
3300005561\|Ga0066699_10161117	Not Available	1539	Open in IMG/M
3300005575\|Ga0066702_10581105	Not Available	674	Open in IMG/M
3300006175\|Ga0070712_100069820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma → unclassified Acidisoma → Acidisoma sp. S159	2507	Open in IMG/M
3300006175\|Ga0070712_100205255	All Organisms → cellular organisms → Bacteria → Proteobacteria	1551	Open in IMG/M
3300006175\|Ga0070712_100339231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1227	Open in IMG/M
3300006175\|Ga0070712_101094180	Not Available	692	Open in IMG/M
3300006755\|Ga0079222_11631300	Not Available	614	Open in IMG/M
3300006800\|Ga0066660_10388104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1148	Open in IMG/M
3300006806\|Ga0079220_10061446	Not Available	1815	Open in IMG/M
3300006852\|Ga0075433_11410785	Not Available	602	Open in IMG/M
3300006954\|Ga0079219_11392974	Not Available	626	Open in IMG/M
3300010043\|Ga0126380_11415391	Not Available	611	Open in IMG/M
3300010048\|Ga0126373_12874771	Not Available	537	Open in IMG/M
3300010360\|Ga0126372_13110156	Not Available	515	Open in IMG/M
3300010361\|Ga0126378_11579058	Not Available	745	Open in IMG/M
3300010376\|Ga0126381_100226265	Not Available	2518	Open in IMG/M
3300010376\|Ga0126381_101382093	Not Available	1018	Open in IMG/M
3300010398\|Ga0126383_11059906	Not Available	900	Open in IMG/M
3300012203\|Ga0137399_11807216	Not Available	500	Open in IMG/M
3300012361\|Ga0137360_10146125	All Organisms → cellular organisms → Bacteria → Proteobacteria	1869	Open in IMG/M
3300012361\|Ga0137360_10161097	All Organisms → cellular organisms → Bacteria → Proteobacteria	1788	Open in IMG/M
3300012362\|Ga0137361_10106044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2453	Open in IMG/M
3300012582\|Ga0137358_10545129	All Organisms → cellular organisms → Bacteria → Proteobacteria	780	Open in IMG/M
3300012582\|Ga0137358_11022435	Not Available	533	Open in IMG/M
3300012683\|Ga0137398_10486344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	847	Open in IMG/M
3300012683\|Ga0137398_10733581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	688	Open in IMG/M
3300012917\|Ga0137395_10397505	Not Available	986	Open in IMG/M
3300012922\|Ga0137394_11489303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300012924\|Ga0137413_10537148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	866	Open in IMG/M
3300015372\|Ga0132256_100890904	All Organisms → cellular organisms → Bacteria → Proteobacteria	1006	Open in IMG/M
3300015373\|Ga0132257_101435160	Not Available	879	Open in IMG/M
3300016270\|Ga0182036_11562516	Not Available	555	Open in IMG/M
3300016270\|Ga0182036_11913869	Not Available	503	Open in IMG/M
3300016341\|Ga0182035_10476732	Not Available	1062	Open in IMG/M
3300016387\|Ga0182040_10682253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	838	Open in IMG/M
3300016404\|Ga0182037_10070299	Not Available	2420	Open in IMG/M
3300020579\|Ga0210407_10755600	Not Available	752	Open in IMG/M
3300020580\|Ga0210403_10030675	All Organisms → cellular organisms → Bacteria → Proteobacteria	4295	Open in IMG/M
3300020580\|Ga0210403_10052027	Not Available	3274	Open in IMG/M
3300020580\|Ga0210403_10218312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	1565	Open in IMG/M
3300020583\|Ga0210401_11547236	Not Available	520	Open in IMG/M
3300021088\|Ga0210404_10492436	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300021168\|Ga0210406_10006603	Not Available	12005	Open in IMG/M
3300021168\|Ga0210406_10616571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	845	Open in IMG/M
3300021170\|Ga0210400_10025087	All Organisms → cellular organisms → Bacteria → Proteobacteria	4633	Open in IMG/M
3300021171\|Ga0210405_10952453	Not Available	650	Open in IMG/M
3300021171\|Ga0210405_10977143	Not Available	640	Open in IMG/M
3300021178\|Ga0210408_10477119	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300021180\|Ga0210396_10251667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1571	Open in IMG/M
3300021403\|Ga0210397_10226268	Not Available	1348	Open in IMG/M
3300021432\|Ga0210384_10232034	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata → Gemmata palustris	1661	Open in IMG/M
3300021559\|Ga0210409_10154455	All Organisms → cellular organisms → Bacteria → Proteobacteria	2102	Open in IMG/M
3300025898\|Ga0207692_11070437	Not Available	534	Open in IMG/M
3300025915\|Ga0207693_10035662	All Organisms → cellular organisms → Bacteria → Proteobacteria	3921	Open in IMG/M
3300025915\|Ga0207693_10097116	All Organisms → cellular organisms → Bacteria → Proteobacteria	2310	Open in IMG/M
3300025915\|Ga0207693_10120877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma → unclassified Acidisoma → Acidisoma sp. S159	2057	Open in IMG/M
3300025915\|Ga0207693_10793412	Not Available	730	Open in IMG/M
3300025915\|Ga0207693_11262345	Not Available	554	Open in IMG/M
3300025916\|Ga0207663_10024524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3474	Open in IMG/M
3300026551\|Ga0209648_10096217	All Organisms → cellular organisms → Bacteria → Proteobacteria	2436	Open in IMG/M
3300026551\|Ga0209648_10155066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1803	Open in IMG/M
3300026555\|Ga0179593_1098382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3187	Open in IMG/M
3300027765\|Ga0209073_10421614	Not Available	551	Open in IMG/M
3300027903\|Ga0209488_10347364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1103	Open in IMG/M
3300028536\|Ga0137415_10233307	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae	1652	Open in IMG/M
3300031231\|Ga0170824_106381646	Not Available	552	Open in IMG/M
3300031231\|Ga0170824_116189935	Not Available	957	Open in IMG/M
3300031573\|Ga0310915_10010271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5405	Open in IMG/M
3300031573\|Ga0310915_10010271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5405	Open in IMG/M
3300031573\|Ga0310915_10086168	All Organisms → cellular organisms → Bacteria → Proteobacteria	2098	Open in IMG/M
3300031573\|Ga0310915_10139595	Not Available	1669	Open in IMG/M
3300031719\|Ga0306917_10368294	Not Available	1119	Open in IMG/M
3300031771\|Ga0318546_10208384	Not Available	1337	Open in IMG/M
3300031833\|Ga0310917_10048734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium BRH_c57	2593	Open in IMG/M
3300031833\|Ga0310917_10062460	Not Available	2316	Open in IMG/M
3300031833\|Ga0310917_10127291	Not Available	1664	Open in IMG/M
3300031910\|Ga0306923_10114442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3054	Open in IMG/M
3300031910\|Ga0306923_10118355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium BRH_c57	3003	Open in IMG/M
3300031910\|Ga0306923_10289799	Not Available	1871	Open in IMG/M
3300031910\|Ga0306923_11683661	Not Available	656	Open in IMG/M
3300031912\|Ga0306921_11964401	Not Available	624	Open in IMG/M
3300031945\|Ga0310913_10039562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3039	Open in IMG/M
3300031945\|Ga0310913_10243658	Not Available	1262	Open in IMG/M
3300031954\|Ga0306926_10107605	Not Available	3425	Open in IMG/M
3300031954\|Ga0306926_10479705	Not Available	1530	Open in IMG/M
3300032001\|Ga0306922_10501783	Not Available	1293	Open in IMG/M
3300032076\|Ga0306924_10395631	Not Available	1582	Open in IMG/M
3300032205\|Ga0307472_101297234	Not Available	701	Open in IMG/M
3300032261\|Ga0306920_102810411	Not Available	662	Open in IMG/M
3300033289\|Ga0310914_10854340	Not Available	809	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.30%
Host-Associated	Host-Associated	2.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.59%
Aquatic	Environmental → Aquatic	2.70%
Plants	Host-Associated → Plants	2.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.59%
Freshwater	Environmental → Aquatic → Freshwater	2.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.17%
Loam	Environmental → Terrestrial → Soil → Loam	23.42%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	22.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.21%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.60%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.32%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	20.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.41%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.60%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.70%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1013317951	3300002245	Forest Soil	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNKIVPSPLRLGNKCFYDREAIESKILETCQD*
JGI25617J43924_102743451	3300002914	Grasslands Soil	MEDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPSPVRLGNKCFYDREAIESKILATCQD*
Ga0062385_103053052	3300004080	Bog Forest Soil	MKDSIVLQGRTYECTKLVQQRYGLDDQTLRKWARNHIVPTPVRLGNKNFYDREAIESKILATCQD*
Ga0062384_1005770872	3300004082	Bog Forest Soil	GRTYECTKLVQQRFGLDDQTLRKKWAKNNIVPSPVRLGNKCFYDRKAIESRILENCRGETKK*
Ga0062389_1009533912	3300004092	Bog Forest Soil	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPSPVRLGNKCFYDREAIESKILATCQD*
Ga0066690_101786532	3300005177	Soil	MKDTITLQSRTYDCTKLVQQKFGLDPQTLRKWARNHIVPSPLRLGNKCFYDRDAIERQILVTCM
Ga0066684_100803891	3300005179	Soil	MKDTITLQSRTYDCTKLVQQKFGLDPQTLRKWARNHIVPSPLRLGNKCFYDRDAIERQILVTCMK*
Ga0070709_102901782	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNKIVPSPVRLGNKNFYDREAIESKILAACQD*
Ga0070709_111063702	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKDSIVLQGRTYECTKLVQQRYGLDDQTLRKWAKNKIVPSPVRLGNKNFYDREAIESKILATCQD*
Ga0070714_1009954431	3300005435	Agricultural Soil	VPSDAGKFKEIQKYMKDSIVLQGRTYECTKLIQQKYGIDDQTLRKWAQNNIVPSPVRLGNKCFYDCETIESKILATCQD*
Ga0070714_1024408771	3300005435	Agricultural Soil	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPSPLRLGNKCFYDREAIESK
Ga0070713_1001655934	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	KYMKDSIVLQGRTYECTKLVQQRYGLDDQTLRKWAKNKIVPSPVRLGNKNFYDREAIESKILATCQD*
Ga0070713_1003453922	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKDSIILQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPSPVRLGNKNFYDREAIESKILAACQD*
Ga0070713_1020586121	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKDSIVLQGRTYECTKLVQQRYGLDDQTLRKWAKNNIVPTPVRLGNKCFYDREA
Ga0070710_112929521	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWVKNNIVPSPVGLGNKNFYDREAIESKILATCQD*
Ga0070711_1000630191	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	RTYECTKLVQQRYGLDDQTLRKWAKNKIVPSPVRLGNKNFYDREAIESKILATCQD*
Ga0070711_1001945522	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKDSIVLQGRTYECTKLVQQRYGLDDQTLRKWAKNNIVPTPVRLGNKNFYDREAIEIKILATRQD*
Ga0070711_1002605503	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	QQAQSGARNFEEIQKYMKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNKIVPSPVRLGNKCYYDREAIECKILATCQD*
Ga0070711_1018245431	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKDSIVLQGRRYECTKLVQQRFGLDDQTLRKWAKNNIVPSPVRLGNKCFYDREAIERKILATCQD*
Ga0070698_1022190761	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKSNIVPSPIRLGNKCFYDLEAIENQILGTCRM*
Ga0070697_1002320744	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPTPVRLGNKNFYDREAIEIKILATRQD*
Ga0066699_101611173	3300005561	Soil	MKDTITLQSRTYDCTKLVQQKFGLDPQTLRKWAKNNIVPSPVKLGNKCFYDREAIESGILVSCQS*
Ga0066702_105811052	3300005575	Soil	MKDTITLQSRTYDCTKLVQQKFGLDPQTLRKWAKNNIVPSPVKLGNKCFYDREAIESGILASCQS*
Ga0070712_1000698202	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPSPVRLGNKNFYDREAIESKILATCQD*
Ga0070712_1002052552	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKDSIVLQGRTYECTKLIQQKYGIDDQTLRKWAQNNIVPSPVRLGNKCFYDCETIESKILATCQD*
Ga0070712_1003392312	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKDTIILQSRTYDCTKLVQQKFGLDPQTLRKWAKNNMVPTPLRLGNKCFYDREAIESKILATCQD*
Ga0070712_1010941802	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKDSIVLQGRTYECTKLVQQRYGLDDQTLRKWAKSNIVPTPVRLGNKNFYDQEAIESKILATCQD*
Ga0079222_116313002	3300006755	Agricultural Soil	GQQAKSGAPSFQEIQKYMKDSIILQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPTPVRLGNKNFYDREAIESKILATCHD*
Ga0066660_103881042	3300006800	Soil	MKDTITLQSRTYDCTKLVQQKFGLDPQTLRKWAKNNIVPSPVKLGNKCFYDRE
Ga0079220_100614464	3300006806	Agricultural Soil	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPTPVRLGNKNFYDREAIESKILATCHD*
Ga0075433_114107852	3300006852	Populus Rhizosphere	SIILQGRTYECTKLVQQRFGLDDQTLRKWVKSDIVPSPVRLGNKCFYDREAIETKILATCRE*
Ga0079219_113929741	3300006954	Agricultural Soil	ARNFQEIQKYMKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPTPVRLGNKNFYDREAIESKILATCDD*
Ga0126380_114153911	3300010043	Tropical Forest Soil	MRDSIILQGRIYECTKLVQQRFGLDDQTLRKWAKSSIVPSPLRLGNKCFYDREAIEIGIL
Ga0126373_128747711	3300010048	Tropical Forest Soil	TYDCTKLVQERFGLDPQTLRKWARNNIIPAPVRLGNKCFYDRETIKSQILANCRT*
Ga0126372_131101562	3300010360	Tropical Forest Soil	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWTKNNIVPTPVRLGNKCFYDREAIEIGILTRCQE*
Ga0126378_115790581	3300010361	Tropical Forest Soil	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWTKNNIVPAPVRLGTKCFYDREAIEIGILTRCQE*
Ga0126381_1002262653	3300010376	Tropical Forest Soil	MKDSIILQGRTYECTRLVQQRFGLDSQTLRKWTKNNIVASPVRLGNKCFYDQEAIETRILASCRD*
Ga0126381_1013820931	3300010376	Tropical Forest Soil	MKDSIILQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPCPVRLGNKCFYDSE
Ga0126383_110599062	3300010398	Tropical Forest Soil	MKDSIILQGRTYECTRLVQQRFGLDSQTLRKWTKNNIVPSPVRLGNKCFYDQEAIETRILASCRD*
Ga0137399_118072161	3300012203	Vadose Zone Soil	MKDTITLQSRTYDCTKLVQQKFGLDPQTLRKWARNHIVPTPLRLGNKCYYDRETIVSKILATCQDEVTKKTPRS*
Ga0137360_101461252	3300012361	Vadose Zone Soil	YRSLNRAVTQKEIRMKDTITLQSRTYDCTKLVQQKFGLDPQTLRKWAKSNIVPSPVRLGNKCFYDREAIESKILATCRR*
Ga0137360_101610973	3300012361	Vadose Zone Soil	MKDSIVLQGRTYECTKLIQQKYGIDDQTLRKWAQNNIVASPVRLGNKCFYDCETIESKILATCQD*
Ga0137361_101060442	3300012362	Vadose Zone Soil	MKDSIILQGRTYECTKLVQQRFGLDDQTLRKWSKNNIVPSPIRLGNKCFYDREAIESKILATCQD*
Ga0137358_105451292	3300012582	Vadose Zone Soil	ECTKLVQQRFGLDDQTLRKWTKNNIVPSPVRLGNKCSYDREAIERKILATCQD*
Ga0137358_110224351	3300012582	Vadose Zone Soil	MKDSIILQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPSPVRLGNKNFYDREAIESKILATCQD*
Ga0137398_104863441	3300012683	Vadose Zone Soil	YFEEIRKYMKDSIVLQGRTYECTKLIQQKYGIDDQTLRKWAQNNIVPSPVRLGNKCFYDCESIESKILATCQD*
Ga0137398_107335811	3300012683	Vadose Zone Soil	MKDTITLQSRTYDCTKLVQQKFGLDPQTLRKWARNHIVPTPLRLGNKCYYDREAIESKILATCQD*
Ga0137395_103975052	3300012917	Vadose Zone Soil	MKDSIVLQGRTYECTKLVQQKFGLDPQTLRKWAKSNIVPSPVRLGNKCFYDREDIESKILATRQD*
Ga0137394_114893032	3300012922	Vadose Zone Soil	MKDTITLQSRTYDCTKLVQQKFGLDPQTLRKWARNHIVPTPLRLGNKCYYDREA
Ga0137413_105371481	3300012924	Vadose Zone Soil	MKDTITLQSRTYDCTKLVQQKFGLDPQTLRKWARNHIVPTPLRLGNKCYYDREAIESKIL
Ga0132256_1008909042	3300015372	Arabidopsis Rhizosphere	DSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPTPVRLGNKNFYDREAIESKILATCHD*
Ga0132257_1014351602	3300015373	Arabidopsis Rhizosphere	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPTPVRLGNKNFYDREAIESKILATCDD*
Ga0182036_115625161	3300016270	Soil	MKDTITLQDRTYDCTKLVQQRFGLDPQTLRKWTKNNIIPAPLRLGNKCFYDREAVEN
Ga0182036_119138692	3300016270	Soil	MKDSITLQGRTYECTKLVQQRFGLDDQTLRKWAKTNMVPSPVRLGNKCFYDWEAIESRILARCQEQVRTIT
Ga0182035_104767322	3300016341	Soil	MKDTITLQNRTYECTKLVQQRFGLDPQTLRKWAKNNVIPTPLRLGNKCFYDREAIET
Ga0182040_106822531	3300016387	Soil	MKDTITLQDRTYDCTKLVQQRFGLDPQTLRKCTKNNIITAPLRLGNKCFYDR
Ga0182037_100702994	3300016404	Soil	MKDTITLQNRTYECTKLVQQRFGLDPQTLRKWAKNNVIPTPLRLGNKCFYDREAIETQILANCRE
Ga0210407_107556002	3300020579	Soil	MKDSIVLQGRTYECTKLVQQRYGLDAQTLKKWAKYNIVPTPVRLGNKNFYDREAIEIKILATRQD
Ga0210403_100306756	3300020580	Soil	MKDSIVLQGRTYECTKLVQQRYGLDDQTLRKWAKNNIVPSPVRLGNKCFYDREAIERKILATCQD
Ga0210403_100520272	3300020580	Soil	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNKIVPSPVRLGNKCFYDREAIESKILATCQD
Ga0210403_102183124	3300020580	Soil	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPSPVRLGNKCFYDREAIESKILATCQD
Ga0210401_115472362	3300020583	Soil	IVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPTPLRLGNKSFYDWEAIESKILATCR
Ga0210404_104924361	3300021088	Soil	MKDSIVLQGRTYECTKLVQQRYGLDDQTLRKWAKYNIVPTPVRLGNKNFYDQEAVESKILATCQD
Ga0210406_100066032	3300021168	Soil	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPTPLRLGNKSFYDWEAIESKILATCRR
Ga0210406_106165711	3300021168	Soil	MKDTIILQSRTYDCTKLVQQKFGLDPQTLRKWAKNNMVPTPLRLGNKCFYDREAIESKILATCQG
Ga0210400_100250871	3300021170	Soil	SIVLQGRTYECTKLVQQRYGLDDQTLRKWAKNNIVPSPVRLGNKCFYDREAIERKILATCQD
Ga0210405_109524532	3300021171	Soil	RYECTKLVQQRFGLDDQTLRKWAKNNIVPSPVRLGNKCFYDREAIERKILATCQD
Ga0210405_109771431	3300021171	Soil	MKDSIVLQGRTYECTKLVQQRFGLDDHTLRKWAKNQIVPSPVRLGNKCFYDREAIESKILATCQN
Ga0210408_104771192	3300021178	Soil	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPSPVRLGNKNFYDREAIEIKILATCQD
Ga0210396_102516672	3300021180	Soil	MKDSIVLQGRTYECTKLVQQRYGLDDQTLRKWAKNNIVPSPVRLGNKCFYDREAIERKILATFED
Ga0210397_102262681	3300021403	Soil	MKDSIVLQGLTYECTKLVQQRYGLDDQTLRKWAKNNIVPSPVRLGNKCFYDREAIER
Ga0210384_102320341	3300021432	Soil	MKDSIVLQGRTYECTKLLQQRYGLDDQTSRKWAKYNIVPTPVRLGNKNFYDQEAVESK
Ga0210409_101544552	3300021559	Soil	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPTPLRLGNKSFYDWEAIESKILATC
Ga0207692_110704371	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	LQGRTYECTKLVQQRFGLDDQTLRKWVKNNIVPSPVGLGNKNFYDREAIESKILATCQD
Ga0207693_100356623	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKDLIVLQGRTYECTKLVQQRYGLDDQTLRKWAKNKIVPSPVRLGNKNFYDREAIESKILATCQD
Ga0207693_100971162	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKDSIVLQGRTYECTKLIQQKYGIDDQTLRKWAQNNIVPSPVRLGNKCFYDCETIESKILATCQD
Ga0207693_101208773	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	EIRKYMKDSIVLQGRTYECTKLVQQRFGLDAHTLRKWAKNNIVPTPVRLGNKCFYDREAIERKILATCQD
Ga0207693_107934122	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKDSIVLQGRTYECTKLVQQRYGLDDQTLRKWAKSNIVPTPVRLGNKNFYDQEAIESKILATCQD
Ga0207693_112623451	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPSPVRLGNKNFYDREAIESKILATCQD
Ga0207663_100245248	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MKDSIVLQGRTYECTKLVQQRYGLDDQTLRKWAKNKIVPSPVRLGNKNFYDREAIESKILATCQD
Ga0209648_100962172	3300026551	Grasslands Soil	MEDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPSPVRLGNKCFYDREAIESKILATCQD
Ga0209648_101550662	3300026551	Grasslands Soil	MKDSIILQGRTYECTKLVQQRFGLDDQTLRKWAKNDIVPTPLRLGNKNFYDREAIESKILATCQD
Ga0179593_10983822	3300026555	Vadose Zone Soil	MKDSIVLQGRTYECTKTNTQKYGIDDQTLRKWAQNNIVASPVRLGNKCFYDCETIESKILATCQD
Ga0209073_104216141	3300027765	Agricultural Soil	MCSVRQAQSGARNFQEIQKYMKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPTPVRLGNKNFYDREAIESKILATCHD
Ga0209488_103473641	3300027903	Vadose Zone Soil	MKDTITLQSRTYDCTKLVQQKFGLDPQTLRKWARNHIVPTPVRLGNKNFYDREAIEIKILATRQD
Ga0137415_102333072	3300028536	Vadose Zone Soil	MKDSIILQGRTYDCTKLVQQRFGLDDQTLRKWSKNNIVPSPIRLGNKCFYDREAIESQILATCQD
Ga0170824_1063816461	3300031231	Forest Soil	MKDSIVLQGRTYECTKLVQQRFGLDDQTLRKWAKNNIVPTPLRLGNKSFYDWEAIESKIPATCRR
Ga0170824_1161899352	3300031231	Forest Soil	MKDSIILQGRTYECTKLVQQRFGLDDQTLRKWAKNKIVPSPVRLGNKCFYDQEAIE
Ga0310915_1001027111	3300031573	Soil	MKDSITLQGRIYECTKLVQQRFGLDDQTLRKWAKNNLVPSPVRLGNKCFYDWEAIERRILETCRK
Ga0310915_100102714	3300031573	Soil	MKDSIILQGRTYECTKLVQQRFGLDDQTLRKWSKNNIVPSPVRLGNKCFYDRQALESRILARCQEQVRTIT
Ga0310915_100861683	3300031573	Soil	MKDTITLQNRIYDCTKLVQQRFGLDPQTLRKWAKNNIVPTLVRLGNKCFYDREAIEIQILATCCK
Ga0310915_101395954	3300031573	Soil	RNRDYMKDSITLQGRTYECTKLVQQRFGLDDQTLRKWAKTNMVPSPVRLGNKCFYDWEAIESRILARCQEQVRTITQFDKT
Ga0306917_103682943	3300031719	Soil	MKDSITLQGRTYECTKLVQQRFGLDDQTLRKWAKTNMVPSPVRLGNKCFYDWEAIESRILARCQEQVRTITQFDKT
Ga0318546_102083843	3300031771	Soil	MKDTITLQNRIYDCTKLVQQRFGLDPQTLRKWAKNNIVPTPVRLGNKCFYDREAIEIQILATCCK
Ga0310917_100487342	3300031833	Soil	MKDSITLQNRTYDCTKLVQQRFGLDSQTLRKWVKNNIVPAPLRLGNKCFYDREDIENRLLGLN
Ga0310917_100624604	3300031833	Soil	MKDSITLQGRIYECTKLVQQRFGLDDQTLRKWAKNNLVPSPVRLGNKCFYDWEAIERR
Ga0310917_101272914	3300031833	Soil	MKDSIILQGRTYECTKLVQQRFGLDDQTLRKWSKNNIVPSPVRLGNKCFYDRQALESRILARCQEQVRTITQFDKT
Ga0306923_101144421	3300031910	Soil	MKDTITLQNRTYECTKLVQQRFGLDPQTLRKWAKNNVIPTPLRLGNKCFYDREAIETQILANCRD
Ga0306923_101183551	3300031910	Soil	ITLQNRTYDCTKLVQQRFGLDSQTLRKWVKNNIVPAPLRLGNKCFYDREDIENRLLGLN
Ga0306923_102897991	3300031910	Soil	ITLQGRTYECTKLVQQRFGLDDQTLRKWAKTNMVPSPVRLGNKCFYDWEAIESRILARCQEQVRTITQFDKT
Ga0306923_116836612	3300031910	Soil	MKDTITLQDRTYDCTKLVQQRFGLDPQTLRKWTKNNIIPAPLRLGNKCFYDREAVENRLLKLS
Ga0306921_119644011	3300031912	Soil	MKDTITLQDRTYDCTRLVQHRFGLDPQTLRKWAKNSIIPAPLRLGNKNFYDRQAVENRLLELS
Ga0310913_100395625	3300031945	Soil	MKDSIILQGRTYECTKLVQQRFGLDDQTLRKWSKNNIVPSPVRLGNKCFYDRQALESRILARCQEQVR
Ga0310913_102436582	3300031945	Soil	MKDTITLQDRTYDCTRLVQQRFGLDPQTLRKWAKNSIIPAPLRLGNKNFYDRQAVENRLLELS
Ga0306926_101076053	3300031954	Soil	MKDTITLQNRTYECTILVQQRFGLDPQTLRKWAKNNVIPTPLRLGNKCFYDREAIETQILANCRD
Ga0306926_104797053	3300031954	Soil	KMKDTITLQDRTYDCTKLVQQRFGLDPQTLRKWTKNNIIPAPLRLGNKCFYDREAVENRLLKLS
Ga0306922_105017833	3300032001	Soil	MKDSITLQGRTYECTKLVQQRFGLDDQTLRKWAKTNMVPSPVRLGKKCFYDWEAIESRILARCQEQVRTITQFDKT
Ga0306924_103956312	3300032076	Soil	MKDTITLQDRTYDCTKLVQQRFGLDPQTLRKWTKNNIIPAPLRLGNKCFYDREAVENRLLELS
Ga0307472_1012972341	3300032205	Hardwood Forest Soil	LQGRTYECTKLVQQRYGLDDQTLRKWAKNKIVPSPVRLGNKNFYDREAIESKILATCQD
Ga0306920_1028104111	3300032261	Soil	MKDSITLQGRTYECTKLVQQRFGLDDQTLRKWAKTNMVPSPVRLGNKCFYDWEAIESRILARCQEQVRTITQF
Ga0310914_108543401	3300033289	Soil	GSLVKMKDTITLQDRTYDCTKLVQQRFGLDPQTLRKWTKNNIIPAPLRLGNKCFYDREAVENRLLKLS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086011

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences