Metagenome / Metatranscriptome Family F086038

Basic Information
Family ID	F086038
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	44 residues
Representative Sequence	RGVRSGKVLTIVNPDPETPLSPADYPPGKLIALTDPSAAPLN
Number of Associated Samples	97
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	2.70 %
% of genes from short scaffolds (< 2000 bps)	0.90 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Most Common Taxonomy
Group	Unclassified (97.297 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.712 % of family members)
Environment Ontology (ENVO)	Unclassified (23.423 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.748 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.57% β-sheet: 5.71% Coil/Unstructured: 85.71%
Feature Viewer

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Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF12802	MarR_2	14.41
PF00857	Isochorismatase	8.11
PF12796	Ank_2	2.70
PF07676	PD40	2.70
PF02527	GidB	1.80
PF02897	Peptidase_S9_N	1.80
PF06210	DUF1003	0.90
PF05239	PRC	0.90
PF01329	Pterin_4a	0.90
PF04055	Radical_SAM	0.90
PF13103	TonB_2	0.90
PF01041	DegT_DnrJ_EryC1	0.90
PF00011	HSP20	0.90
PF14344	DUF4397	0.90
PF02586	SRAP	0.90
PF01740	STAS	0.90
PF02195	ParBc	0.90
PF07884	VKOR	0.90
PF00313	CSD	0.90
PF10756	bPH_6	0.90
PF13358	DDE_3	0.90
PF01618	MotA_ExbB	0.90
PF01047	MarR	0.90
PF06778	Chlor_dismutase	0.90
PF16657	Malt_amylase_C	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	8.11
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	8.11
COG0357	16S rRNA G527 N7-methylase RsmG (former glucose-inhibited division protein B)	Translation, ribosomal structure and biogenesis [J]	1.80
COG1505	Prolyl endopeptidase PreP, S9A serine peptidase family	Amino acid transport and metabolism [E]	1.80
COG1770	Protease II	Amino acid transport and metabolism [E]	1.80
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.90
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.90
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.90
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.90
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.90
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.90
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	0.90
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.90
COG3253	Coproheme decarboxylase/chlorite dismutase	Coenzyme transport and metabolism [H]	0.90
COG4243	Vitamin K epoxide reductase (VKOR) family protein, predicted involvement in disulfide bond formation	General function prediction only [R]	0.90
COG4420	Uncharacterized membrane protein	Function unknown [S]	0.90

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.30 %
All Organisms	root	All Organisms	2.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.30 %
cellular organisms	root	All Organisms → cellular organisms	2.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.30 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.30 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.30 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.30 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	97.30 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.90 %

Scaffold	Taxonomy	Length	IMG/M Link
3300021168\|Ga0210406_10096918	All Organisms → cellular organisms → Bacteria → Acidobacteria	2508	Open in IMG/M
3300027604\|Ga0208324_1007397	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3707	Open in IMG/M
3300031823\|Ga0307478_10414981	All Organisms → cellular organisms → Bacteria → Acidobacteria	1116	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.30%
Host-Associated	Host-Associated	2.70%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.97%
Aquatic	Environmental → Aquatic	24.32%
Plants	Host-Associated → Plants	2.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	65.77%
Freshwater	Environmental → Aquatic → Freshwater	18.92%
Peat	Environmental → Terrestrial → Peat	7.21%
Sediment	Environmental → Aquatic → Sediment	5.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.34%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	18.02%
Loam	Environmental → Terrestrial → Soil → Loam	15.32%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.11%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.41%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.51%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.11%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.21%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.41%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.50%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.60%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.01%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.11%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.21%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	6.31%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.31%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	5.41%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.41%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.50%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.50%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.60%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.80%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.80%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.90%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.90%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.90%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300001098	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1	Environmental	Open in IMG/M
3300001166	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003351	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300025434	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10 (SPAdes)	Environmental	Open in IMG/M
3300025439	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100 (SPAdes)	Environmental	Open in IMG/M
3300025500	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 (SPAdes)	Environmental	Open in IMG/M
3300025507	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028021	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE5	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030693	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N55_03177580	2189573000	Grass Soil	HSGEVLTIINPEPQTPLTQEDLPPGKLIALTDPSLRP
JGI12633J13313_1052372	3300001098	Forest Soil	IKGILSGHVLTIVNPEPETPLTREDYPVGKLIALSDPSAAPLN*
JGI12694J13545_10132382	3300001166	Forest Soil	LTIVNPDPDTPLTPAEYPPGKLIALSDPSNSPGN*
JGI12635J15846_108490611	3300001593	Forest Soil	XDVLTIVNPEPETPLTQEDYPLGKLIALTDPSATTLN*
JGIcombinedJ26739_1006517641	3300002245	Forest Soil	HTGDVLTIINPEPEIPISRDDYPVGKLIALTDPSNKLHN*
JGIcombinedJ26739_1011508071	3300002245	Forest Soil	GEELTIINPEPDIPLSHEEYPPGKLISLTDPSTEPQN*
JGI26346J50198_10224371	3300003351	Bog Forest Soil	DRLLIRGVVSGDVLAIVNPEPETPLTQEDYPLGKLISLTDPSVAPLN*
Ga0062389_1038020651	3300004092	Bog Forest Soil	GILSGEVLTIVNPQPETPLTPEEYPPGKLIALTDPSAAPLN*
Ga0066672_104250611	3300005167	Soil	EGSRLLVRGILSDDVLTIVNTEPQTPLAPEDYPPGKSIALTDPSTAPLN*
Ga0066679_110162332	3300005176	Soil	VVRGIFSGDVVTIINAEPETPLTQEDYPLGKLIVLTDPSTTPLN*
Ga0070735_108591142	3300005534	Surface Soil	RLTIRGVRSGKVLTIVNPDPSTPLTPAEYPPGKLIALSDPSASPFN*
Ga0070761_101224211	3300005591	Soil	GVRSGKVLTIVNPDPETPLSPADYPPGKLIALTDPSTAPLN*
Ga0070761_106295392	3300005591	Soil	AVESQCLVIRGVRSGKVLTIVNPDPETPLSAADYPPGKLIALTDPSAAPLN*
Ga0070761_110889651	3300005591	Soil	RGVRSGKVLTIVNPDPETPLSPADYPPGKLIALTDPSAAPLN*
Ga0070764_104845541	3300005712	Soil	ESQSLTIRGERSGEVLKIINPDPDTPLTPAEYPPGKLIALSDPSASQGN*
Ga0075017_1013183752	3300006059	Watersheds	TIINPNPDAPLSPAEYPLGKLIALSDPSTNSPVN*
Ga0075019_102915981	3300006086	Watersheds	RSGKVLTIVNPDPETPLSPAEYPPGKLIALSDPSAAPLN*
Ga0075015_1005738601	3300006102	Watersheds	VESQSLTIRGVRSGEVLRIINPDPETPLTPTDYPPGRLIALADPSAAPLN*
Ga0075030_1002588321	3300006162	Watersheds	AVESQSLTIRGVRSGEVLTIINPNPDAPLSPAEYPLGKLIALSDPSTKSPAN*
Ga0075014_1000634312	3300006174	Watersheds	VESQSLTIRGVRSGEVLTIINPNPEAPLSPAEYPLGKLIALSDPSTNSPVN*
Ga0075014_1006122981	3300006174	Watersheds	RSGEVLTIINPDPSTPLTPAEYPPGKLIALSDPSRTSPAN*
Ga0099829_107104211	3300009038	Vadose Zone Soil	AVESDRLLIRGIRSGKVLTIMNPEPEIPIKLEDYPPGKLIALTDPSTLPLD*
Ga0066709_1013215151	3300009137	Grasslands Soil	IRGVRSGEVLTIINPDPETPLTPAEYPPGKLIALSDPSTSIQN*
Ga0099792_109856932	3300009143	Vadose Zone Soil	LSGQVLTIINPAPDIPLSQLDFPPGKLIALTDPSTSPPN*
Ga0105241_111148002	3300009174	Corn Rhizosphere	LVIQGVLSGKVLTIMNPEPNTPISPQDYPPGKLIVLNDPAIDSQN*
Ga0116218_10343084	3300009522	Peatlands Soil	IRGVRSGKVLTIVNPDPETPLTPVDYPPGKLIALTDPSRAPLN*
Ga0116225_11871131	3300009524	Peatlands Soil	SGEVLAIVNPEPETPLTQDDYPLGKLIALTDPSATPLNDWN*
Ga0116111_11525062	3300009616	Peatland	GAILMVVNPEPETPLTPQDFPLGKLIALSDPSQAPLN*
Ga0116125_100038022	3300009628	Peatland	SGKVLTIINPEPEIPLTEADYPTGKLIALTDPSTATLN*
Ga0116217_108152492	3300009700	Peatlands Soil	ESQCLVIRGVRSGKVLTIVNPDPETPLTPAEYPPGKLIALTDPSLAPLN*
Ga0116134_10557864	3300009764	Peatland	LVIRGVLSGELLTIVNPEPETPLTREDYPPGKLIALSDPSAAPLN*
Ga0126373_106771262	3300010048	Tropical Forest Soil	EDQCLVIRGIRSGEVLVINVAPEIPLTEEDYPPGRLIALSDPSTDVPN*
Ga0136449_1012900531	3300010379	Peatlands Soil	SGEVLTIINPDPETPLTPAEYPPGKLIALSDPSTSTPFN*
Ga0150983_106053922	3300011120	Forest Soil	GVRSGKVLTIVNPDPDTPLTPAEYPPGKLIALSDPSTSPGN*
Ga0150983_111104512	3300011120	Forest Soil	RSGKVLTIVNPDPETPLSAADYPPGKLIALTDPSAAPLN*
Ga0137383_112934351	3300012199	Vadose Zone Soil	RGILSGEVLTIINSEPETPLTPQDYPPGKLIALTDPSTEPLN*
Ga0137399_102008434	3300012203	Vadose Zone Soil	DRLVIRGTLSGDVLTIINPEPETPLTKEDYPLGKLIALTDPSQTPLN*
Ga0137366_108592091	3300012354	Vadose Zone Soil	EGQSLTIRGIRSGKVLKIVNPDPNTPLNSAEYPPGKLIALSDPSGVPSN*
Ga0137395_103135421	3300012917	Vadose Zone Soil	LTIISTELASPLTPEDYPLGKLIALTDPSTAPLN*
Ga0137396_110966651	3300012918	Vadose Zone Soil	IRGTLSGDVLTIINPEPETPLTKEDYPLGKLIALTDPSQTPLN*
Ga0181518_104809053	3300014156	Bog	VLAIVNPEPETPLTQDDYPLGKLIALTDPSAAPLNDLN*
Ga0181530_104154501	3300014159	Bog	LSGAVLTILNPEPETPLTQEDYPVGKLIALTDPSAAPLN*
Ga0182024_110709931	3300014501	Permafrost	RVLAVESQRLVIRGELSGKVLTIVNHQPDVPLTEEDYPPGKLIALSDPSITPN*
Ga0182024_115664681	3300014501	Permafrost	IRGVRSGKVLTIVNPDPDTPLTPAEYPPGKLIALSDPSTSPGN*
Ga0182021_130671422	3300014502	Fen	LIRGTLSGAVLTILNPEPETPLTQEDYPVGKLIALTDPSAAPLN*
Ga0182030_108162121	3300014838	Bog	ILTIVNPEPETPLRHEDYPPGKLIALTDPSTAPLN*
Ga0134112_1000672810	3300017656	Grasslands Soil	LSGAVLTIISTELASPLTPEDYPLGKLIALTDPSTAPLN
Ga0187801_101310172	3300017933	Freshwater Sediment	LAVESHSLTIRGVRSGEVLTIINPNPDTPLTPADYPPGKLIALSDPSTNSPVN
Ga0187801_102556562	3300017933	Freshwater Sediment	RVIAVESQCLTIRGVRSGKVLTIVNPDPETPLSPAEYPPGKLIRLSDPSARPLN
Ga0187848_103597392	3300017935	Peatland	GILSGAILMVVNPEPETPLTPQDFPLGKLIALSDPSQAPLN
Ga0187821_100728004	3300017936	Freshwater Sediment	VEGQSLTIRGVRSGKVLKIVNPDPSTPLTSTEYPPGKLIKLSDPSGSPAN
Ga0187816_100431291	3300017995	Freshwater Sediment	CLTIRGVRSGKVLTIVNPDPETPLSPAEYPPGKLIRLSDPSARPLN
Ga0187875_103845033	3300018035	Peatland	DRLRIRGILSGKVLTIINPEPEIPLTEADYPTGKLIALTDPSTATLN
Ga0187883_101887713	3300018037	Peatland	LLTIVNPEPDTPLTPEDYPPGKLIALTDPSAAPLN
Ga0187859_101366482	3300018047	Peatland	SQCLVIRGVRSGRVLTIMNPDPETPLTLADYPPGKLIALSDPSRAPLN
Ga0187858_100210631	3300018057	Peatland	VLAIVNPEPETPLTQDDYPLGKLIALTDPSAAPLNDLN
Ga0210403_107368181	3300020580	Soil	VVAVESQSLTIRGERSGEVLKIINPDPDTPLTPAEYPPGKLIALSDPSASQGN
Ga0210395_113494621	3300020582	Soil	VQSDCLTIRGVRSGKVLTIVNPDPETPLTTADYPPGKLIALSDPSAAPLN
Ga0210401_105825442	3300020583	Soil	LVIRGVQSGKVLTIMNPDPETPLSPAEYPPGKLIALSDPSAAPLN
Ga0210406_100969181	3300021168	Soil	GTHSGDVLTIINPQPETPLTKEDYPPGKLIALTDPSQTPQN
Ga0210405_107978642	3300021171	Soil	DVLTIINPEPETPLTKEDYPLGKLIALTDPSETPLN
Ga0210393_100447031	3300021401	Soil	GVHTGDVLTIINPEPEIPISQDDYPVGKLIALTDPSNKLHN
Ga0210393_111052851	3300021401	Soil	DVLTIINPDPDTPLSPVEYPPGMLIALSDPSAEAPTEAN
Ga0210398_108672331	3300021477	Soil	GKVLTIVNPDPETPLTTADYPPGKLIALSDPSAAPLN
Ga0210398_109108122	3300021477	Soil	RSGKVLTIVNPDPETPLSPADYPPGKLIALTDPSTAPLN
Ga0210402_118229551	3300021478	Soil	GTLSGDVLTTINPEPETPLTKEDYPLGKLIALTDPSETPLN
Ga0210410_110275522	3300021479	Soil	SGKVLTIVNPDPETPLSPAEYPPGKLIALSDPSAAPLN
Ga0213853_106990111	3300021861	Watersheds	VLAVESQSLTIRGVRSGEVLTIINPNPDTPLSPAEYPLGKLIALSDPSTNLPVN
Ga0224558_10274231	3300023090	Soil	VIRGVLSGEVLTIVNPEPESPLTQQDYPLGKLIALTDPSQSPLN
Ga0208690_10108243	3300025434	Peatland	RGILSGKVLTIINPEPEIPLTEADYPTGKLIALTDPSTATLN
Ga0208323_10053701	3300025439	Peatland	GDVLTIINPHPEIPISQEDYPVGKLIALTDPSKTLPN
Ga0208686_10704883	3300025500	Peatland	GDVLAIVNPEPETPLTHDDYPPGKLIALTDPSVAPLNDLN
Ga0208188_10800523	3300025507	Peatland	RLFIRGILSGDVLAIVNPEPETPLTHDDYPPGKLIALTDPSVAPLNDLN
Ga0207646_103015074	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VIRGTLSGDVLTIINPEPETPLTKEDYPPGKLIALTDPSQTPLN
Ga0207646_107614561	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VESQCLTIRGVRSGKVLTIMNPDPDTPLTPAEYPPGKLIALSDPGATPLN
Ga0257154_10309661	3300026467	Soil	KVLTIMNPDPETPLSPAEYPPGKLIALSDPSAAPLN
Ga0179587_106724882	3300026557	Vadose Zone Soil	VEVESQRLTLRGIRSGRVLTINAPAESPLSARDYPLGKLIALSDPAAAPGD
Ga0209421_10919801	3300027432	Forest Soil	RLFIRGVRSGDVLVIVNPEPETPLTPEDYPLGKLIALTDPSATPANGLN
Ga0208324_10073971	3300027604	Peatlands Soil	VSGDVLAIVNPEPETPLSQEDYPLGKLISLTDPSVAPLN
Ga0208324_11331191	3300027604	Peatlands Soil	IRGVRSGKVLTIVNPDPETPLTPVDYPPGKLIALTDPSRAPLN
Ga0209626_11466102	3300027684	Forest Soil	GDVLTIINPEPEIPISRDDYPVGKLIALTDPSNKLHN
Ga0209274_107526652	3300027853	Soil	VRSGKVLTIVNPDPETPLSPADYPPGKLIALTDPSAAPLN
Ga0209517_101484551	3300027854	Peatlands Soil	KVLTIVNPDPETPLTTADYPPGKLIALTDPSAAPLN
Ga0209488_105659431	3300027903	Vadose Zone Soil	AIEDDRLVIRGTLSGDVLTIINPEPETPLTKEDYPLGKLIALTDPSQTPLN
Ga0265352_10154761	3300028021	Soil	IRGVRSGKVLTIVNPDPDTPLTPAEYPPGKLIALSDPSTSPGN
Ga0209526_100090331	3300028047	Forest Soil	IEDDRLVIRGTLSGDVLTIINPEPDTPLTKEDYPLGKLIALTDPSQTPLN
Ga0265338_108358022	3300028800	Rhizosphere	EQSLTIRGVRSGEVLTIINPNPETPLTPDEYPPGKLIALSDPSTAPGN
Ga0311353_106284042	3300030399	Palsa	VLTIVNPESAIPLSEDDYPVGKLIALTDPSASAVLN
Ga0311370_116886391	3300030503	Palsa	LVIRGVRSGRVLTIMNPDPETPLTLADYPPGKLIALSDPSAAPLN
Ga0302183_102110651	3300030509	Palsa	RLVIRGVLSGEVLAIVNDEPDTPFTSDDYPLGKLIALTDPSAAPLNDLN
Ga0311372_102837261	3300030520	Palsa	ESQCLVIRGVRSGKVLTIVNPDPETPLSAAEYPPGKLIALTDPSAAPLN
Ga0311354_118859952	3300030618	Palsa	SGEVLTIINPDPETPLTPAEFPPGKLIALSDPSNSPFN
Ga0302313_102788442	3300030693	Palsa	GVRSGKVLTIVNPDPETPLSAAEYPPGKLIALTDPSAAPLN
Ga0265461_131621221	3300030743	Soil	HSGEVLTIVNPELATPLSKDEYPVGKLIALTDPSTDPPA
Ga0170824_1005811292	3300031231	Forest Soil	CLVIRGVQSGKVLTIMNPDPETPLSPAEYPPGKLIALSDPSAAPLN
Ga0170824_1067062212	3300031231	Forest Soil	SQCLTIQGVRSGKVLTIMNPDPETPLSPADYPPGKLIALSDPGAVPLN
Ga0302324_1030222712	3300031236	Palsa	IRSGEVLTIINPEPDTFLSQEDYPPGKLIALTDPSALLPN
Ga0265316_111432962	3300031344	Rhizosphere	ESQSLTIRGVRSGKVLKIVNPDPNTPLTPDEYPPGKLIKLSDPSMTPGN
Ga0310686_1127590671	3300031708	Soil	VLTIVNPEPEIPLSEEEYPLGKLIALTDPSTALLN
Ga0307474_104490413	3300031718	Hardwood Forest Soil	VLTIVNPDPDTPLTPAEYPPGKLIALSDPSTSPGN
Ga0307477_100327915	3300031753	Hardwood Forest Soil	VESQSLTIRGVRSGEVLTIINPNPDAPLSPAEYPLGKLIALSDPSSNSPVN
Ga0307475_100224581	3300031754	Hardwood Forest Soil	VVAVESQRLTIRGVRSGKVLTIVNPDPNTPLTPAEYPPGKLIKLSDPSAAPGN
Ga0307475_113086292	3300031754	Hardwood Forest Soil	GDRLVIRGTLSGDVLTIINPEPETPLTKEDYPLGKLIALTDPSQTPLN
Ga0307478_104149811	3300031823	Hardwood Forest Soil	QGIRSGKVLTIVNPDPDTPLSCAEYPPGKLIALSDPSASPFN
Ga0307479_100076462	3300031962	Hardwood Forest Soil	VESQSLTIRGVRSGEVLTIINPNPDAPLSPAEYPLGKLIALSDPSTNSPVN
Ga0311301_109456461	3300032160	Peatlands Soil	VAVESTRLVIQGVLSGQVLTIVNPDPEVPLTPKDYPLGKLIALTDPSRATPN
Ga0335079_120933491	3300032783	Soil	VVAVESERLTIRGVRSGEVLTIDTQHMGTRLTPAEYPPGKLIALSDPSTTQGS
Ga0335078_118151991	3300032805	Soil	YRVVAVESQSLTIRGVRTGKVLTINPATPFRVADYPPGRLIALSDPNNGPAS
Ga0335083_104978602	3300032954	Soil	VESQSLTIRGVRSGAVLTIINPDPETPLTPAEYPPGRLIALSDPSTAPAN
Ga0335073_101164261	3300033134	Soil	LFIQGILSGEVLTIINPELETPLRAEDYPLGKLIALTDPSTAPLN
Ga0335073_105077653	3300033134	Soil	IRGVRSGAVLTIINPDPETPLTPAEYPPGRLIALSDPSTAPAN

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086038

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


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