Metagenome Family F086139

Basic Information
Family ID	F086139
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	101 residues
Representative Sequence	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERAKTYRAITPSVTPSPDRRGSHTTPASTSPRAR
Number of Associated Samples	97
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (99.099 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (11.712 % of family members)
Environment Ontology (ENVO)	Unclassified (54.054 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (83.784 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.03% β-sheet: 0.00% Coil/Unstructured: 66.97%
Feature Viewer

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Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00072	Response_reg	24.32
PF02687	FtsX	21.62
PF12704	MacB_PCD	16.22
PF02518	HATPase_c	14.41
PF08546	ApbA_C	2.70
PF13426	PAS_9	1.80
PF08448	PAS_4	0.90
PF00877	NLPC_P60	0.90
PF13188	PAS_8	0.90
PF03551	PadR	0.90
PF08447	PAS_3	0.90
PF15902	Sortilin-Vps10	0.90
PF00156	Pribosyltran	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	2.70
COG0791	Cell wall-associated hydrolase, NlpC_P60 family	Cell wall/membrane/envelope biogenesis [M]	0.90
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.90
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.90
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.90

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.10 %
All Organisms	root	All Organisms	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.10 %
cellular organisms	root	All Organisms → cellular organisms	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.10 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.90 %

Scaffold	Taxonomy	Length	IMG/M Link
3300031548\|Ga0307408_100001944	All Organisms → cellular organisms → Bacteria	14967	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	64.86%
Environmental	Environmental	35.14%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	64.86%
Terrestrial	Environmental → Terrestrial	35.14%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	40.54%
Soil	Environmental → Terrestrial → Soil	35.14%
Rhizoplane	Host-Associated → Plants → Rhizoplane	24.32%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.52%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	21.62%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.72%
Soil	Host-Associated → Plants → Rhizosphere → Soil	18.02%
Loam	Environmental → Terrestrial → Soil → Loam	14.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.70%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	21.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	18.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.41%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.90%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	9.01%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	7.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.31%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	5.41%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.41%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	5.41%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.60%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.70%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	1.80%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.80%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.90%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300002070	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012495	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.old.040610	Host-Associated	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012503	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_R	Host-Associated	Open in IMG/M
3300012511	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10	Environmental	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_00785750	2140918013	Soil	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVDERAKTYRAITPSVTPSPDRRGSHTTPASTSPRAR
SwBSRL2_0276.00001210	2162886013	Switchgrass Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVDERAKTYRAITPSVTPSPDRR
JGI11643J12802_102372013	3300000890	Soil	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVDERAKTYRAI
JGI24750J21931_10576461	3300002070	Corn, Switchgrass And Miscanthus Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVXEERAKTYRAITPSVTPSPDRRGSHTTPAS
Ga0062593_1000090412	3300004114	Soil	MSEAVPRRDASAPNAHVDGHIDDDLAVLLDRVCEQLPNTYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAHGRQGARAITPPVTPSPDRRGSRTTPASTSPRVR*
Ga0062593_1000236592	3300004114	Soil	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERAKTYRAITPSVTPSPDRRGSHTTPASTSPRAR*
Ga0063356_1043754211	3300004463	Arabidopsis Thaliana Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVDERAKTYRAITPSVTPSPDRRGSHTTPASTSPRAR*
Ga0062595_1002803842	3300004479	Soil	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERAKTYRAITPSVTPSPDRRGSHTTPASRSPRAR*
Ga0062592_1000042095	3300004480	Soil	DASAPNAHVDGHIDDDLAVLLDRVCEQLPNTYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAHGRQGARAITPPVTPSPDRRGSRTTPASTSPRVR*
Ga0065712_104724772	3300005290	Miscanthus Rhizosphere	MSEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYVAVPVVEAQAKPVPRAITPLVTP
Ga0065715_104846452	3300005293	Miscanthus Rhizosphere	MSEAVPRRDASAPNAHVDGHIDDDLAVLLDRVCEQLPNTYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAHGRQGARAITPPVTPSPDRRGSRTTPASTSP
Ga0065705_101237522	3300005294	Switchgrass Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVDERAKTYRAITPSVTPSPDRRGSHTTPASRSPRAR*
Ga0070683_1002998242	3300005329	Corn Rhizosphere	MSEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYVAVPVVEAQAKPVPRAITPLVTPSPDRPGSRTTPASTSPRVR*
Ga0070670_1000129972	3300005331	Switchgrass Rhizosphere	MSEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAQAGPVPHAITPLVTPSPDRRGSRTTPASTSPRVR*
Ga0070682_1016581311	3300005337	Corn Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERAKTYR
Ga0070689_1003749691	3300005340	Switchgrass Rhizosphere	TVRRHATAAAPNGHIDGDLTVLLDRVCEQLPHNYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYPAVPMAQERAKDAPRAITPSVTPSPDRRGSHTMPASTSPRAR*
Ga0070687_1000552692	3300005343	Switchgrass Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERAKTYRAITPSVTPSPDRPGSHTTPASRSPRAR*
Ga0070687_1014469941	3300005343	Switchgrass Rhizosphere	MSETVRRHATAAAPNGHIDGDLTVLLDRVCEQLPHNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAHGRQGARAITPPVTPSPDRRGSRTTPASTSPRVR*
Ga0070661_1000636152	3300005344	Corn Rhizosphere	MSEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYVAVPVVEAQAKPVPRAITPLVTPSPDRRGSRTTPASTSPRVR*
Ga0070675_1009264362	3300005354	Miscanthus Rhizosphere	MSEAVPRRDASAPNAHVDGHIDDDLAVLLDRVCEQLPNTYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAHGRQG
Ga0070671_1001869012	3300005355	Switchgrass Rhizosphere	MSETVTRHDASAAPNGHIDGDLTVLLDRVCEQLPHDYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYAAVPVAERRAKDAPRAITPSATPSPDRRGSHTMPASRLPRAR*
Ga0070674_1001948872	3300005356	Miscanthus Rhizosphere	MSETVTRHDSPAPNGRIDSDLAALLDRVCEQLPHDYTKQLVRDVVRLKLSLGFEGSVRDYLERRSGEYAAVPVVGKTAK*
Ga0070674_1009269162	3300005356	Miscanthus Rhizosphere	MSETVTRHDTSAAPNGHIDGDLTVLLDRVCEQLPHDYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYAAVPVAERRAKDAPRAITPSATPSPDRRGSHTMPASRLPRAR*
Ga0070688_1000130755	3300005365	Switchgrass Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERAKTYRAITPSVTPSPDRRGSHT
Ga0070688_1010236452	3300005365	Switchgrass Rhizosphere	MSEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNTYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYVAVPVVEAQAKPVPRAITPLVTPSPDRPGSRTTPASTSPRVR*
Ga0070667_1005930362	3300005367	Switchgrass Rhizosphere	MSETVRRHATAAAPNGHIDGDLTVLLDRVCEQLPHNYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYPAVPMAQERAKDAPRAITPSVTPSPDRRGSHTMPASTSPRAR*
Ga0070714_1024449091	3300005435	Agricultural Soil	MSEPVTPRTTSAPNGHVDGHIDGDLAVLLDRVCEQLPHDYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYAAVPLVGERRKEHGSLITPLVTPSPDRRGSRTTPASRLPRVR*
Ga0070710_104703391	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	SEPVTPRTTSAPNGHVDGHIDGDLAVLLDRVCEQLPHDYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYAAVPLVGERRKEHGSLITPLVTPSPDRRGSRTTPASRLPRVR*
Ga0070711_1000562422	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSEPVTPRNTSAPNGHVDGHIDGDLAVLLDRVCEQLPHDYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYAAVPLVGERRKEHGSLITPLVTPSPDRRGSRTTPASRLPRVR*
Ga0070662_1002704512	3300005457	Corn Rhizosphere	MSETVRRHATAAAPNGHIDGDLTVLLDRVCEQLPHNYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYPAVPMAQERAKDAPRAITPSVTPSPDRRGSHT
Ga0068867_1005512362	3300005459	Miscanthus Rhizosphere	MSEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAQAKPVPHAITPLVTPSPDRRGSRTTPASTSPRVR*
Ga0070698_1007848592	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERAKTYRAITPSVTPSPDRRGSHTMPASTSPRAR*
Ga0068853_1000441433	3300005539	Corn Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERAKTYRAITPSVTP
Ga0068853_1005040031	3300005539	Corn Rhizosphere	MSEAVPRRDASAPNAHVDGHIDDDLAVLLDRVCEQLPNTYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAHGRQGARAITPPVTPSPDRRG
Ga0070672_1007785972	3300005543	Miscanthus Rhizosphere	MSETVRRHATAAAPNGHIDGDLTVLLDRVCEQLPHNYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYPAVPMAQERAKDAPRAITPSVTPSPDRRGS
Ga0070693_1005370941	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	PERDVYLRGTPAREAGMSEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAQAKPVPHAITPLVTPSPDRRGSRTTPASTSPRVR*
Ga0068855_1011825842	3300005563	Corn Rhizosphere	EAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYPAVPMAQERAKDAPRAITPSVTPSPDRRGSHTMPASTSPRAR*
Ga0068854_1003035592	3300005578	Corn Rhizosphere	MSEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYPAVPMAQERAKDAPRAITPSVTPSPDRRGSHTMPASTSPRAR*
Ga0068856_1009761171	3300005614	Corn Rhizosphere	MSEAVPRRDASAPNAHVDGHIDDDLAVLLDRVCEQLPNTYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEADGRQGARAITPPVTPSPDRRGSRTTPASTSPRVR*
Ga0068852_1001317022	3300005616	Corn Rhizosphere	MSEAVPRRDASAPNAHVDGHIDDDLAVLLDRVCEQLPNTYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEADGRQGARTITPPVTPSPDRRGSRTTPASTSPRVR*
Ga0068859_1022243252	3300005617	Switchgrass Rhizosphere	DDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAQAGPVPHAITPLVTPSPDRRGSRTTPASTSPRVR*
Ga0068864_1006770651	3300005618	Switchgrass Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVDERAKTYRAITPSVTPSPDRRGS
Ga0068866_109525382	3300005718	Miscanthus Rhizosphere	MSETVTRHDTSAAPNGHIDGDLTVLLDRVCEQLPHDYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEHAAVPVAERRAKDAPRAITPSATPSPDRRGSHTMPA
Ga0068870_105703602	3300005840	Miscanthus Rhizosphere	MSEAVPRRDASAPNAHVDGHIDDDLAVLLDRVCEQLPNTYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAQA
Ga0082029_11950322	3300006169	Termite Nest	MGTTVAQHEASMPNGRIDADLAVLLEQVCERLPHDYSKQLVRDVGRLKLWMGYEGSVRDYLKRRSGDYPAVSAAEERATK*
Ga0082029_15169523	3300006169	Termite Nest	MSETVTRHDTAAPNGPIDGDLALLLDRVCEQLPHDYAKQLIRDVGRLKLWLGFEGSVRDYLTRRSGEYAAVSVIEESRRGSRPITPSATPSPDQRGSRMTPASTSPRGR*
Ga0075422_101944711	3300006196	Populus Rhizosphere	MSETVTRPDTSAPNGHIDGDLAVLLDRVCEQLPHHYTKQLVRDVARLKLWLGFEGSVRDYVTRRSGEYAAVSVVEE
Ga0079220_104559162	3300006806	Agricultural Soil	MSEPVPRRAPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSSEYAAVPVVTERAQDAPRAITPLATPSPDRRGSRMTPASTSPRVR*
Ga0075428_1000272945	3300006844	Populus Rhizosphere	MGTTVARHEGAMPNGRIDADLAVLLERVCEQLPHDYSKQLVRDVGRLKLWMGFEGSVRDYLKRRSGDYAAVSVVEERAAK*
Ga0075428_1000482102	3300006844	Populus Rhizosphere	MSTSVSRQDSSAPNVQIDADLAVLLDRVCEQLPHDYTKQVVRDFGRLKLWMGYDGSVRDYVKRRSGEYPSVSVEEGAK*
Ga0075428_1005999102	3300006844	Populus Rhizosphere	MSETVTRQDTSAPNGHIDGDLAVLLDRVCEQLPHHYTKQLVRDVARLKLWLGFEGSVRDYVTRRSGEYAAVSVAEEHPKQPSRAITPSATPSPDRRGSHTTPASTSPRAR*
Ga0075431_1002744022	3300006847	Populus Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERPKTYRAITPSVTPSPDRRGSHTTPASTSPRAR*
Ga0075433_100343362	3300006852	Populus Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERPKTYRAITPSVTPSPDRRGSHTTPASRSPRAR*
Ga0075429_1001774542	3300006880	Populus Rhizosphere	MSETVTRPDTSAPNGHIDGDLAVLLDRVCEQLPHHYTKQLVRDVARLKLWLGFEGSVRDYVTRRSGEHAAVSVVEEHPKQPSRAITPSATPSPDRRGSHTTPASTSPRAR*
Ga0075418_102203322	3300009100	Populus Rhizosphere	MPNGRIDADLAVLLERVCEQLPHDYSKQLVRDVGRLKLWMGFEGSVRDYLKRRSGDYAAVSVVEERAAK*
Ga0075418_108089742	3300009100	Populus Rhizosphere	MSETVTRPDTSAPNGHIDGDLAVLLDRVCEQLPHHYTKQLVRDVARLKLWLGFEGSVRDYVTRRSGEYAAVSVAEEHPKQPSRAITPSATPSPDRRGSHTTPA
Ga0111538_101195321	3300009156	Populus Rhizosphere	MSETVTRPDTSAPNGHIDGDLAVLLDRVCEQLPHHYTKQLVRDVARLKLWLGFEGSVRDYVTRRSGEYAAVSVAEEHPKQPS
Ga0105249_108520862	3300009553	Switchgrass Rhizosphere	MSETVTRHDSPAPNGRIDSDLAALLDRVCEQLPHDYTKQLVRDVVRLKLELGFENDVRDYLKRRSGEYPVIPSPNKEKTRRW*
Ga0105239_123554281	3300010375	Corn Rhizosphere	MNEAVPRRDPSTPNVHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAQ
Ga0105246_101782252	3300011119	Miscanthus Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERAKTYRAITPSVTPSPDRRGSHTT
Ga0157323_10356701	3300012495	Arabidopsis Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAV
Ga0157351_10337601	3300012501	Unplanted Soil	MSETVTRHDSSAPNGHLDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERAKTYRAITPSVTPSPDR
Ga0157313_10004682	3300012503	Arabidopsis Rhizosphere	MSETVTRHDSSAPNGHLDADLAVLLDRVCEQLPHDYTKQLVRDVVRLKLWLGFEGSVRDYLMRRSGEHAAVPVVEERAKLASRAITPSVTPSPDRRGSHTTPASTSPRAR*
Ga0157332_10393731	3300012511	Soil	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVP
Ga0157352_10583581	3300012519	Unplanted Soil	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEER
Ga0164300_100680602	3300012951	Soil	MSETVTRHDSPAPNGRIDSDLAALLDRVCERLPHDYTKQLVRDVVRLKLSLGFEGSVRDYLERRSGEYAAVPVVRKTAK*
Ga0164298_101638182	3300012955	Soil	MSETVTRHDSPAPNGRIDSDLAALLDRVCEQLPHDYTKQLVRDVVRLKLSLGFEGSVRDYLERRSGEYAAVPVVRKTAK*
Ga0164302_100877962	3300012961	Soil	MSETVTRHDPPAPNGRIDGDLAALLDRVCEQLPHDYTKQLVRDVVRLKLSLGFEGSVRDYLERRSGEYAAVPVVRKTAK*
Ga0164305_101947932	3300012989	Soil	MGTPAIRHETSAPNATIDGDIELLLDRVCAQLPHDYTKQLVRDVVRLKLSMGFEGSVRDYLKRRSGEFPAVVAVVQDTDK*
Ga0157371_112714811	3300013102	Corn Rhizosphere	MSETVRRHATAAAPNGHIDGDLTVLLDRVCEQLPHNYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYPAVPMAQERAKDAPRAITPSVT
Ga0157374_107206691	3300013296	Miscanthus Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERAKTYRAITPSVTPSPDRRGS
Ga0157378_120199112	3300013297	Miscanthus Rhizosphere	MSETVTRHDTSAAPNGHIDGDLTVLLDRVCEQLPHDYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEHAAVPVAERRAKDAPRAITPSATPSPDRRGSHTMPASRLPRAR*
Ga0157372_109726102	3300013307	Corn Rhizosphere	MSETVRRHATAAAPNGHIDGDLTVLLDRVCEQLPHNYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYPAVPMAQERAKDAPRAITPSVTPSPDRRGSHTMPA
Ga0157372_116518752	3300013307	Corn Rhizosphere	MSEAVPRRDASAPNAHVDGHIDDDLAVLLDRVCEQLPNTYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVV
Ga0132258_116782482	3300015371	Arabidopsis Rhizosphere	MGTPAIRHETSAPNASIDGDIELLLDRVCAQLPHDYTKRLVRDVVRLKLSMGFEGSVRDYLKRRSGEFPAVTAVAQDSDG*
Ga0207666_10649842	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERAKTYRAITPSVTPSPDRRGSHTTPASRSPRAR
Ga0207656_100087662	3300025321	Corn Rhizosphere	MSEAVPRRDASAPNAHVDGHIDDDLAVLLDRVCEQLPNTYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAHGRQGARAITPPVTPSPDRRGSRTTPASTSPRVR
Ga0207656_101710192	3300025321	Corn Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVDERAKTYRAITPSVTPSPDRRGSHTTPASRSPRAR
Ga0207642_104122532	3300025899	Miscanthus Rhizosphere	MSETVTRHDTSAAPNGHIDGDLTVLLDRVCEQLPHDYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEHAAVPVAERRAKDAPRAITPSATPSPDRRGSHTMPASRLPRAR
Ga0207688_100145932	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERAKTYRAITPSVTPSPDRRGSHTMPASTSPRAR
Ga0207643_103367402	3300025908	Miscanthus Rhizosphere	MSEAVPRRDASAPNAHVDGHIDDDLAVLLDRVCEQLPNTYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAQAKPVPHAITPLVTPSPDRRGSRTTPASTSPRVR
Ga0207654_111134031	3300025911	Corn Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERAKTYRAITPSVTPSPDRRGSHTTPASTSPRAR
Ga0207695_103311801	3300025913	Corn Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERAKTYRAITPSVTPSPDRPGSHTTPASRSPRAR
Ga0207649_100298342	3300025920	Corn Rhizosphere	MSEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYVAVPVVEAQAKPVPRAITPLVTPSPDRRGSRTTPASTSPRVR
Ga0207650_100546792	3300025925	Switchgrass Rhizosphere	MSEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYVAVPVVEAQAKPVPRAITPLVTPSPDRRGSSTTPASTSPRVR
Ga0207650_103295171	3300025925	Switchgrass Rhizosphere	MSEAVPRRDASAPNAHVDGHIDDDLAVLLDRVCEQLPNTYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEADGRQGARAITPPVTPSPDRRGSRTT
Ga0207664_118576481	3300025929	Agricultural Soil	SAPNGHVDGHIDGDLAVLLDRVCEQLPHDYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYAAVPLVGERRKEHGSLITPLVTPSPDRRGSRTTPASRLPRVR
Ga0207644_101562702	3300025931	Switchgrass Rhizosphere	MSETVTRHDSPAPNGRIDSDLAALLDRVCERLPHDYTKQLVRDVVRLKLSLGFEGSVRDYLERRSGEYAAVPVVGKTAK
Ga0207706_112241821	3300025933	Corn Rhizosphere	MSEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAQAKPVPHAITPLVTPSPDRRGSRTTPASTSASAASWRTSPAST
Ga0207686_103135412	3300025934	Miscanthus Rhizosphere	MSETVTRHDSPAPNGRIDSDLAALLDRVCEQLPHDYTKQLVRDVVRLKLSLGFEGSVRDYLERRSGEYAAVPVVGKTAK
Ga0207670_118457461	3300025936	Switchgrass Rhizosphere	TVRRHATAAAPNGHIDGDLTVLLDRVCEQLPHNYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYPAVPMAQERAKDAPRAITPSVTPSPDRRGSHTMPASTSPRAR
Ga0207669_110182432	3300025937	Miscanthus Rhizosphere	MSETVTRHDTSAAPNGHIDGDLTVLLDRVCEQLPHDYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYAAVPVAERRAKDAPRAITPSATPSPDRRGSHTMPASRLPRAR
Ga0207691_116367191	3300025940	Miscanthus Rhizosphere	TAAAPNGHIDGDLTVLLDRVCEQLPHNYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYPAVPMAQERAKDAPRAITPSVTPSPDRRGSHTMPASTSPRAR
Ga0207661_100798902	3300025944	Corn Rhizosphere	MSEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYVAVPVVEAQAKPVPRAITPLVTPSPDRPGSRTTPASTSPRVR
Ga0207679_100078996	3300025945	Corn Rhizosphere	MSEAVPRRDASAPNAHVDGHIDDDLAVLLDRVCEQLPNTYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEADGRQGARAITPPVTPSPDRRGSRTTPASTSPRVR
Ga0207679_107544672	3300025945	Corn Rhizosphere	MSEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYVAVPVVEAQAKPVPRAITPLVTPSPD
Ga0207651_106595932	3300025960	Switchgrass Rhizosphere	MSEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYVAVPVVEAQAKPVPRAITPLVTPSPDRP
Ga0207640_106455712	3300025981	Corn Rhizosphere	SEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAQAKPVPHAITPLVTPSPDRRGSRTTPASTSPRVR
Ga0207708_108289272	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MSETVTRHDTSAAPNGHIDGDLTVLLDRVCEQLPHDYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYAAVPV
Ga0207648_106023742	3300026089	Miscanthus Rhizosphere	MSEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEADGRQGARTITPPVTPSPDRRGSRTTPASTSPRVR
Ga0207676_100943662	3300026095	Switchgrass Rhizosphere	MNEAVPRRDPSTPNVHVDGQIDDDLAVLLDRVCEQLPNNYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEAQAGPVPHAITPLVTPSPDRRGSRTTPASTSPRVR
Ga0207698_103692911	3300026142	Corn Rhizosphere	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLIRDVARLKLWLGFEGSVRDYVTRRSGEYAAVPVVEERAKTYRAITPSVTPSPDRPGSHTTPASR
Ga0207428_100599572	3300027907	Populus Rhizosphere	MSTSVSRQDSSAPNVQIDADLAVLLDRVCEQLPHDYTKQVVRDFGRLKLWMGYDGSVRDYVKRRSGEYPSVSVEEGAK
Ga0207428_102180602	3300027907	Populus Rhizosphere	MSETVTRPDTSAPNGHIDGDLAVLLDRVCEQLPHHYTKQLVRDVARLKLWLGFEGSVRDYVTRRSGEYAAVSVAEEHPKQPSRAITPSATPSPDRRGSHTTPASTSPRAR
Ga0209382_122719581	3300027909	Populus Rhizosphere	MGTTVARHEGAMPNGRIDADLAVLLERVCEQLPHDYSKQLVRDVGRLKLWMGFEGSVRDYLKRRSGDYAAVSVVEERAAK
Ga0268266_120374921	3300028379	Switchgrass Rhizosphere	MSEAVPRRDASAPNAHVDGHIDDDLAVLLDRVCEQLPNTYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVEADGRQGARAITPPVTPSPDRRGSRTTPAS
Ga0307408_1000019442	3300031548	Rhizosphere	MSETVTRQDTSAPNGHIDDDLAVLLDRVCEQLPHDYTKQLIRDVARLKIWLGFEGSVRDYLARRSGEYAAVSIVEEHPKQPYRAITPSATPSPDRRGSHTTPASTSPRAR
Ga0308175_1000069985	3300031938	Soil	MSEAVPRRDPSTPNAHVDGQIDDDLAVLLDRVCERLPNHYTKQLVRDVARLKLWLGFEGSVRDYLTRRSGEYAAVPVVTERATDAPRAITPLATPSPDRRGSRMTPASTSPRVR
Ga0307470_103053432	3300032174	Hardwood Forest Soil	MSETVTRHDSSAPNGHIDADLAVLLDRVCEQLPHDYTKQLVRDVVRLKLWLGFEGSVRDYLMRRSGEHAAVPVVEERAKLASRAITPSVTPSPDRRGSHTTPASTSPRAR
Ga0310810_100554562	3300033412	Soil	MSETVRRHATAAAPNGHIDGDLTVLLDRVCEQLPHNYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYPAVPMAQERAKDAPRAITPSVTPSPDRRGSHTMPASTSPRAR
Ga0310811_111907862	3300033475	Soil	MSETVRRHATAAAPNGHIDGDLTVLLDRVCEQLPHNYTKQLVRDVARLKLWLGYEGSVRDYLTRRSGEYPAVPMAQERAKDAP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086139

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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