Metagenome Family F086466

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086466
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	65 residues
Representative Sequence	MTRAFGAVSPTIGKLLRAYAASGVALRRLSAWSGKIVAALRDPEPQSPEDYERELRERVFHPPQA
Number of Associated Samples	66
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	70.91 %
% of genes near scaffold ends (potentially truncated)	36.36 %
% of genes from short scaffolds (< 2000 bps)	79.09 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.455 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog (36.364 % of family members)
Environment Ontology (ENVO)	Unclassified (74.545 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (50.909 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.46% β-sheet: 0.00% Coil/Unstructured: 50.54%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01613	Flavin_Reduct	46.36
PF09084	NMT1	10.00
PF12974	Phosphonate-bd	8.18
PF00296	Bac_luciferase	4.55
PF00171	Aldedh	3.64
PF13379	NMT1_2	1.82
PF13454	NAD_binding_9	1.82
PF03601	Cons_hypoth698	0.91
PF01339	CheB_methylest	0.91
PF00266	Aminotran_5	0.91
PF00872	Transposase_mut	0.91
PF03466	LysR_substrate	0.91
PF03704	BTAD	0.91
PF13408	Zn_ribbon_recom	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	46.36
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	10.00
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	10.00
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	4.55
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	3.64
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	3.64
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	3.64
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	1.82
COG2855	Uncharacterized membrane protein YadS, UPF0324 family	Function unknown [S]	0.91
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.91
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	0.91
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.45 %
Unclassified	root	N/A	24.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.45 %
Unclassified	root	N/A	24.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.45 %
Unclassified	root	N/A	24.55 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	74.55 %
Unclassified	root	N/A	24.55 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	62.73 %
Unclassified	root	N/A	24.55 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	57.27 %
Unclassified	root	N/A	24.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.55 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	23.64 %
Roseiarcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae	17.27 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.55 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	22.73 %
Roseiarcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus	17.27 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	24.55 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	22.73 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	17.27 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000313\|WSSedB1CaDRAFT_10069970	Not Available	662	Open in IMG/M
3300009615\|Ga0116103_1092915	All Organisms → cellular organisms → Bacteria → Proteobacteria	779	Open in IMG/M
3300009617\|Ga0116123_1051511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1171	Open in IMG/M
3300009617\|Ga0116123_1099702	Not Available	774	Open in IMG/M
3300009634\|Ga0116124_1205502	Not Available	547	Open in IMG/M
3300009644\|Ga0116121_1036421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1554	Open in IMG/M
3300010379\|Ga0136449_104034111	Not Available	548	Open in IMG/M
3300014158\|Ga0181521_10153842	Not Available	1317	Open in IMG/M
3300014160\|Ga0181517_10001770	All Organisms → cellular organisms → Bacteria → Proteobacteria	23279	Open in IMG/M
3300014160\|Ga0181517_10022963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	4243	Open in IMG/M
3300014160\|Ga0181517_10076389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1992	Open in IMG/M
3300014160\|Ga0181517_10082955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1895	Open in IMG/M
3300014160\|Ga0181517_10355505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	759	Open in IMG/M
3300014160\|Ga0181517_10515355	Not Available	604	Open in IMG/M
3300014160\|Ga0181517_10687147	Not Available	509	Open in IMG/M
3300014161\|Ga0181529_10011642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8080	Open in IMG/M
3300014161\|Ga0181529_10023921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4926	Open in IMG/M
3300014161\|Ga0181529_10098713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1870	Open in IMG/M
3300014161\|Ga0181529_10115648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1684	Open in IMG/M
3300014161\|Ga0181529_10124011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1608	Open in IMG/M
3300014161\|Ga0181529_10361316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	794	Open in IMG/M
3300014161\|Ga0181529_10377287	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300014161\|Ga0181529_10378334	Not Available	770	Open in IMG/M
3300014161\|Ga0181529_10580346	Not Available	587	Open in IMG/M
3300014161\|Ga0181529_10725851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	511	Open in IMG/M
3300014164\|Ga0181532_10394836	Not Available	769	Open in IMG/M
3300014167\|Ga0181528_10102135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	1559	Open in IMG/M
3300014168\|Ga0181534_10025869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2940	Open in IMG/M
3300014168\|Ga0181534_10452980	Not Available	718	Open in IMG/M
3300014168\|Ga0181534_10513634	Not Available	679	Open in IMG/M
3300014168\|Ga0181534_10541767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	663	Open in IMG/M
3300014169\|Ga0181531_10700574	Not Available	630	Open in IMG/M
3300014199\|Ga0181535_10210641	Not Available	1188	Open in IMG/M
3300014201\|Ga0181537_10033009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	3562	Open in IMG/M
3300014201\|Ga0181537_10903654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	598	Open in IMG/M
3300014490\|Ga0182010_10396691	All Organisms → cellular organisms → Bacteria → Proteobacteria	752	Open in IMG/M
3300014490\|Ga0182010_10426913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	725	Open in IMG/M
3300014491\|Ga0182014_10024240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4966	Open in IMG/M
3300014491\|Ga0182014_10281508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	860	Open in IMG/M
3300014492\|Ga0182013_10040918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3678	Open in IMG/M
3300014492\|Ga0182013_10144012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1515	Open in IMG/M
3300014492\|Ga0182013_10540855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	601	Open in IMG/M
3300014493\|Ga0182016_10144465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1609	Open in IMG/M
3300014498\|Ga0182019_10130318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1574	Open in IMG/M
3300014498\|Ga0182019_10832560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	662	Open in IMG/M
3300014654\|Ga0181525_10514950	Not Available	663	Open in IMG/M
3300014655\|Ga0181516_10100704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	1459	Open in IMG/M
3300014655\|Ga0181516_10115941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1354	Open in IMG/M
3300014657\|Ga0181522_10139619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1413	Open in IMG/M
3300014658\|Ga0181519_10133322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1592	Open in IMG/M
3300014838\|Ga0182030_11697159	Not Available	512	Open in IMG/M
3300014839\|Ga0182027_10910938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	909	Open in IMG/M
3300017935\|Ga0187848_10159505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	988	Open in IMG/M
3300017935\|Ga0187848_10422583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	548	Open in IMG/M
3300017946\|Ga0187879_10299727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	893	Open in IMG/M
3300017946\|Ga0187879_10841458	Not Available	513	Open in IMG/M
3300017948\|Ga0187847_10007302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7686	Open in IMG/M
3300017988\|Ga0181520_10007935	All Organisms → cellular organisms → Bacteria → Proteobacteria	15338	Open in IMG/M
3300017988\|Ga0181520_10059037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3560	Open in IMG/M
3300017988\|Ga0181520_10081531	All Organisms → cellular organisms → Bacteria → Proteobacteria	2857	Open in IMG/M
3300017988\|Ga0181520_10157178	All Organisms → cellular organisms → Bacteria → Proteobacteria	1841	Open in IMG/M
3300017988\|Ga0181520_10162088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1804	Open in IMG/M
3300017988\|Ga0181520_10377845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	1034	Open in IMG/M
3300017988\|Ga0181520_10534178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	824	Open in IMG/M
3300018021\|Ga0187882_1090138	Not Available	1330	Open in IMG/M
3300018021\|Ga0187882_1424924	Not Available	503	Open in IMG/M
3300018035\|Ga0187875_10365986	All Organisms → cellular organisms → Bacteria → Proteobacteria	773	Open in IMG/M
3300018046\|Ga0187851_10108954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1713	Open in IMG/M
3300018047\|Ga0187859_10188987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1098	Open in IMG/M
3300023091\|Ga0224559_1250333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	599	Open in IMG/M
3300023258\|Ga0224535_1123706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	547	Open in IMG/M
3300025812\|Ga0208457_1057968	Not Available	786	Open in IMG/M
3300026456\|Ga0255351_1056167	All Organisms → cellular organisms → Bacteria → Proteobacteria	787	Open in IMG/M
3300028090\|Ga0255349_1069659	Not Available	673	Open in IMG/M
3300028745\|Ga0302267_10361415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	605	Open in IMG/M
3300028765\|Ga0302198_10413817	All Organisms → cellular organisms → Bacteria → Proteobacteria	614	Open in IMG/M
3300028867\|Ga0302146_10188427	All Organisms → cellular organisms → Bacteria → Proteobacteria	819	Open in IMG/M
3300029911\|Ga0311361_10343969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1626	Open in IMG/M
3300029953\|Ga0311343_10693441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	852	Open in IMG/M
3300029955\|Ga0311342_10736970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	770	Open in IMG/M
3300029988\|Ga0302190_10120322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	1151	Open in IMG/M
3300030000\|Ga0311337_10546742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	993	Open in IMG/M
3300031235\|Ga0265330_10025554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	2676	Open in IMG/M
3300031235\|Ga0265330_10041419	Not Available	2042	Open in IMG/M
3300031235\|Ga0265330_10050401	Not Available	1826	Open in IMG/M
3300031239\|Ga0265328_10011560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	3523	Open in IMG/M
3300031239\|Ga0265328_10070774	Not Available	1282	Open in IMG/M
3300031241\|Ga0265325_10005604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	7731	Open in IMG/M
3300031241\|Ga0265325_10034259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	2703	Open in IMG/M
3300031241\|Ga0265325_10106877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1364	Open in IMG/M
3300031242\|Ga0265329_10135393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	794	Open in IMG/M
3300031249\|Ga0265339_10006557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7626	Open in IMG/M
3300031249\|Ga0265339_10284218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	792	Open in IMG/M
3300031250\|Ga0265331_10428162	Not Available	594	Open in IMG/M
3300031344\|Ga0265316_10814103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	655	Open in IMG/M
3300031524\|Ga0302320_11315099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	728	Open in IMG/M
3300031595\|Ga0265313_10264221	All Organisms → cellular organisms → Bacteria → Proteobacteria	699	Open in IMG/M
3300031711\|Ga0265314_10043569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	3189	Open in IMG/M
3300031712\|Ga0265342_10625159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	542	Open in IMG/M
3300031759\|Ga0316219_1179441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	769	Open in IMG/M
3300031788\|Ga0302319_10227968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	2301	Open in IMG/M
3300031788\|Ga0302319_10388183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1566	Open in IMG/M
3300031884\|Ga0316220_1055217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1619	Open in IMG/M
3300032722\|Ga0316231_1246071	All Organisms → cellular organisms → Bacteria → Proteobacteria	737	Open in IMG/M
3300033405\|Ga0326727_10071034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	5021	Open in IMG/M
3300033755\|Ga0371489_0013062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	7368	Open in IMG/M
3300033755\|Ga0371489_0322075	Not Available	737	Open in IMG/M
3300033982\|Ga0371487_0455605	Not Available	544	Open in IMG/M
3300034282\|Ga0370492_0001999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	8103	Open in IMG/M
3300034282\|Ga0370492_0231868	All Organisms → cellular organisms → Bacteria → Proteobacteria	751	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.45%
Host-Associated	Host-Associated	14.55%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	54.55%
Terrestrial	Environmental → Terrestrial	30.91%
Plants	Host-Associated → Plants	14.55%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	53.64%
Peat	Environmental → Terrestrial → Peat	17.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.55%
Soil	Environmental → Terrestrial → Soil	13.64%
Marine	Environmental → Aquatic → Marine	0.91%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	50.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	17.27%
Soil	Host-Associated → Plants → Rhizosphere → Soil	14.55%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.73%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.73%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	45.45%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	17.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	14.55%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	10.91%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.45%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	2.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.82%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	36.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	14.55%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	9.09%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	9.09%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	6.36%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	5.45%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	4.55%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	3.64%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	3.64%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	2.73%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.82%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.91%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000313	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 Cattail	Environmental	Open in IMG/M
3300009615	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100	Environmental	Open in IMG/M
3300009617	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100	Environmental	Open in IMG/M
3300009634	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014161	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014655	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018021	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300023091	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34	Environmental	Open in IMG/M
3300023258	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 30-34	Environmental	Open in IMG/M
3300025812	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150 (SPAdes)	Environmental	Open in IMG/M
3300026456	Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r2	Environmental	Open in IMG/M
3300028090	Peat soil microbial communities from Stordalen Mire, Sweden - C.B.S.T-25.v15	Environmental	Open in IMG/M
3300028745	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3	Environmental	Open in IMG/M
3300028765	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2	Environmental	Open in IMG/M
3300028867	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E3_3	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029953	II_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029988	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_3	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031235	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG	Host-Associated	Open in IMG/M
3300031239	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG	Host-Associated	Open in IMG/M
3300031241	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG	Host-Associated	Open in IMG/M
3300031242	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG	Host-Associated	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031711	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG	Host-Associated	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031759	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031884	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18005	Environmental	Open in IMG/M
3300032722	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18027	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M
3300033982	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
WSSedB1CaDRAFT_100699702	3300000313	Wetland	MNVRFGVVSQTIGRIPLRRVTSSAALRGFGAWTGKIVAALRDPTPQSPEDYERELRERVFHPPQA*
Ga0116103_10929151	3300009615	Peatland	NWRLLMTRGFGAVSPTIGKLLRAYAASRIALRRLVGWSGKILAALRDPEPQSPEDYERELRERVFLPPQP*
Ga0116123_10515113	3300009617	Peatland	MTRGFGAVSPTIGKLLRAYAASRIALRRLGGWSGKILAALRDPEPQSPEDYERELRERVFLPPQP*
Ga0116123_10997022	3300009617	Peatland	MHYVYQNYQLTNSRLHMTRRLGAVSLTIGRISRAHAASGAAWRRFSAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0116124_12055021	3300009634	Peatland	MTRSFGAVSLTIAKISRARAAFGAAWRRFGAWSGEIVAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0116121_10364212	3300009644	Peatland	MQYVYKTYQLANARLQMTRSFDAVSLAIGRISRAWAASGAAWRRFGAGGANLVAALRDPQPQSPEDYERELRERVFLPPQP*
Ga0136449_1040341111	3300010379	Peatlands Soil	MTRNHDALSPTLGWFSRLRAASGAAWRRFGAWGANLVTALRDPQPQSPEDYERELRERVFLPPQP*
Ga0181521_101538422	3300014158	Bog	MQYVYQNYQLAKSRLHMTRSFGAVSLAIGRISRARAASGAAWRRFGAWGGKVVAALKDPEPQSPEDYERELRERVF
Ga0181517_1000177019	3300014160	Bog	MTRSFGAVSLTVGRFIRARAASGAAWRRFGARVGRIVAALRDPEPQSREDYERELRERVFHPPQT*
Ga0181517_100229635	3300014160	Bog	MTRSLGVVSLTIGPISRARAAFAAAWRRFGAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0181517_100763892	3300014160	Bog	MARNLRSVSPTIGRFSRLRAAWRRFGAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0181517_100829555	3300014160	Bog	YLYQNCQLTNSRLPMTRNHDALSPTLGWFSRLRAASGAAWRRFGAWGANLVAALRDPQPQSPEDYERELRERVFLPPQP*
Ga0181517_103555051	3300014160	Bog	MTRGFHVVSRAIGPISRARAASAAAWRRFGAWSGKIVAALRDPEPQSAEDYERELRERVFHPPQA*
Ga0181517_105153552	3300014160	Bog	SPVIGKFLRAYAASGVVLQRLSAWSGKIVAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0181517_106871471	3300014160	Bog	MTRDFYVVSRAIGRISRARAASGAAWRRFGAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0181529_100116424	3300014161	Bog	MNVHFGAVSRTAGRIYLLGAASGAALRRLGAWGGKVIVALRDPEPQSAEDYERELRERVFHPPQA*
Ga0181529_100239214	3300014161	Bog	MSQGFGAVSPVIGKFLRAYAASGVVLQRLSAWSGKIVAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0181529_100987132	3300014161	Bog	MTRNHDALSPTLGWFSRLRAASGAAWRRFGAGGANLVAALRDPQPQSPEDYERELRERVFLPPQP*
Ga0181529_101156482	3300014161	Bog	MARSLRSVSPTIGRFSRLRAAWRRFGAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0181529_101240113	3300014161	Bog	MTRGFGVVSPTIGKLLRAYAASGVALQRLSAWSGKIVAALRDPEPQSPEDYERELRERVFHPPQP*
Ga0181529_103613161	3300014161	Bog	MSRSFGAVSLTLTRITRARAASGVAWRRIGAWGGRILAALRDPEPQSLEDYERELRERVFHPPQP*
Ga0181529_103772873	3300014161	Bog	MTRAFHVVSDAIGRISGAGVAPAAAWRRLRVWGGKIVAALKDPEPQSPEDYERELRERVFHPPQA*
Ga0181529_103783342	3300014161	Bog	MTRGFSSASPTIGRLSRLRAASGAAWRRFGSWSGRIAAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0181529_105803462	3300014161	Bog	MTRGFHVVSHAIGRISRARAASGAAWRRFGAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0181529_107258512	3300014161	Bog	LGVVSLTIGPISRARAAFAAAWRRFGAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0181532_103948362	3300014164	Bog	MTRNHDALSPTLGWFSRLRAASGAAWRRFGAWGANLVAALRDPQPQSPEDYERELRERVFLPPQP*
Ga0181528_101021353	3300014167	Bog	MNRSFGAVSPTIGKLLRAYAASGVALQRLSAWSGKIVAALRDPEPQSPEDYERELRERVFHPPRT*
Ga0181534_100258691	3300014168	Bog	MNRSFGAVSPTIGKLLRAYAASGVALQRLSAWSGKIVAALRDPEPQSPEDYERELRERVFHPPQP*
Ga0181534_104529802	3300014168	Bog	VYQNCQLTYSRLLMARSLRSVSPTIGRFSRLRAAWRRFGAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0181534_105136341	3300014168	Bog	MTRSFDAASPTVGRLSRLRAASGAAWRRLGAWSLEVVAALRDSEPQSPEDYERELRERVFHPPRT*
Ga0181534_105417672	3300014168	Bog	MSQGFGAVSPVIGKFLRAYAASGVVLQRLSAWSGKIVAALRDPEPQSPEDYE
Ga0181531_107005741	3300014169	Bog	RLPMTRGFGAVSPAIDKLLRTHAASAVALRRLAAWSGKIVAALRDPEPQSPEDYERELRERVFHPPRT*
Ga0181535_102106412	3300014199	Bog	MSQGFGTVSPVIGKFLRAYAASGVVLQRLSAWSGKIVAALRDPEPQSPEDY
Ga0181537_100330095	3300014201	Bog	MTRGFGAVSPAIDKLLRTHAASAVALRRLAAWSGKIVAALRDPEPQSPEDYERELRERVFHPPQT*
Ga0181537_109036542	3300014201	Bog	MTRDFGAVSPTIGNLLRAYAASSVALQRLFAWGGKIVAALRDPEPQS
Ga0182010_103966911	3300014490	Fen	LINLRLSMTVRIDAVSLTIGRISLLRARSCAALRRFGAWAGRIVAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0182010_104269132	3300014490	Fen	MSRSFGAISLPISKISSARTASGAVWRRLASWSAKVVAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0182014_100242406	3300014491	Bog	MTVRIDAVSLTIGRISLLRARSCAALRRFGAWAGRIVAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0182014_102815082	3300014491	Bog	MTRSFSFVSPTIGRLSRLCAASGAAWRRFGAWSGKIAAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0182013_100409182	3300014492	Bog	MTRNHDALSPTLGWFSRLRAASGAAWRRFGAWGANLVAALRDPQPQSREDYERELRERVFLPPQP*
Ga0182013_101440123	3300014492	Bog	MTRDFGAVSPTIGNLLRAYAASGVALQRLFAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQP*
Ga0182013_105408552	3300014492	Bog	MTRTSEAASLTVGRFSRLRAAFGAAWRRFGAWSLKIIAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0182016_101444652	3300014493	Bog	MTRDFGAVSPTIGNLLRAFASSSVALQRLFAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQP*
Ga0182019_101303181	3300014498	Fen	SRRLGAVSLTIGRFSQVRAALRRFGAWSGKIVAALRDPEPQSQEDYERELRERVFHPPQA
Ga0182019_108325601	3300014498	Fen	MSRSIGAVSPTIGKLLRAYAASGVALQRLSAWSGKIVAALRDPEPQSPEDYER
Ga0181525_105149502	3300014654	Bog	MNRSFGAVSPTIGKLLRAYAASGVALQRLSAWSGKIVAALRDPEPQSPEDYERELRERVFHPPQT*
Ga0181516_101007043	3300014655	Bog	MNRSFGAVSPTIGKLLRAYAASGVALQRLSAWSGKIVAALRDPEPQSPEDY
Ga0181516_101159412	3300014655	Bog	MNVHFGAVSRTAGRIYLLGAASGAALRRLGAWGGKVIVALRDPEPQSAEDYERELRE
Ga0181522_101396192	3300014657	Bog	MTRDFGAVSPTIGNLLRAYAASSVALQRLFAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQP*
Ga0181519_101333223	3300014658	Bog	TIGRLSRLRAASGAAWRRFGSWSGRIAAALRDPEPQSPEDYERELRERVFHPPQA*
Ga0182030_116971591	3300014838	Bog	MTRGIGAVSPTVGILLRGYAALRVALQRLGAWSGKIVAALRDPEPQSPEDYERELRERVFLPPQP*
Ga0182027_109109382	3300014839	Fen	MTRNHDALSPTLTWFSRLRAASGAAWRRFGAWGANLVAALRDPQPQSREDYERELRERVFLPPQP*
Ga0187848_101595052	3300017935	Peatland	PMTRNHDALSPTLGWFSRLRAASGAAWRRFGAWGANLVAALRDPQPQSPEDYERELRERVFLPPQP
Ga0187848_104225832	3300017935	Peatland	MTRSFGAVSLTIGRISRARAAAWRRFGAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQA
Ga0187879_102997271	3300017946	Peatland	MTRNHDALSPTLGWFSRLRAASGAAWRRFGAWGANLVAALRDPQPQSPEDYERELRERVFHPPQA
Ga0187879_108414582	3300017946	Peatland	MTRSFDAVSLAIGRISRAWAASGAARRRFGAWGGKIIAALKDPEPQSPEDYERELRERVFHPPQA
Ga0187847_100073028	3300017948	Peatland	MTRNHDALSPTLGWFSRLRAASGAAWRRFGAWGANLVAALRDPQPQSREDYERELRERVFLPPQP
Ga0181520_1000793510	3300017988	Bog	MTRSFGAVSLTVGRFIRARAASGAAWRRFGARVGRIVAALRDPEPQSREDYERELRERVFHPPQT
Ga0181520_100590374	3300017988	Bog	MSQGFGAVSPVIGKFLRAYAASGVVLQRLSAWSGKIVAALRDPEPQSPEDYERELRERVFHPPQA
Ga0181520_100815313	3300017988	Bog	MTRGFSSASPPIGRLSRLRAASGAAWRRFGAWCGRIVAALRDPEPQSPEDYERELRERVFHPPQA
Ga0181520_101571783	3300017988	Bog	MTRNHDALSPTLGWFSRLRAASGAAWRRFGAWGANLVAALRDPQPQSPEDYERELRERVFLPPQP
Ga0181520_101620882	3300017988	Bog	MNVHFGAVSRTAGRIYLLGAASGAALRRLGAWGGKVIVALRDPEPQSAEDYERELRERVFHPPQA
Ga0181520_103778451	3300017988	Bog	MTRSLGVVSLTIGPISRARAAFAAAWRRLGAWSLEVVAALRDSEPQSPEDYERELRERVFHPPRT
Ga0181520_105341781	3300017988	Bog	MARNLRSVSPTIGRFSRRRAAWRRFGAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQ
Ga0187882_10901381	3300018021	Peatland	MTRSFDAVSPTIRRISRVRAASGAAWRRIGAWSRKIVAALRDPQPQSPEDYERELRERVFHPPQA
Ga0187882_14249241	3300018021	Peatland	NCQLTNSRLPMTRNHDALSPTLGWFSRLRAASGAAWRRFGAWGANLVAALRDPQPQSPEDYERELRERVFLPPQP
Ga0187875_103659861	3300018035	Peatland	QNCQLTNSRLPMTRNHDALSPTLTWFSRLRAASGAAWRRFGAWGANLVAALRDPQPQSPEDYERELRERVFLPPQP
Ga0187851_101089543	3300018046	Peatland	MTRDFHVVSRAIGRISRARAASGAAWRRFGAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQA
Ga0187859_101889871	3300018047	Peatland	ALSPTLGWFSRLRAASGAAWRRFGAWGANLVAALRDPQPQSPEDYERELRERVFLPPQP
Ga0224559_12503331	3300023091	Soil	MTRAFHVVSDAIARISGVRGAPGAAWRRLRVWVGKIVAALKDPEPQSAEDYERELRERVFHPPQA
Ga0224535_11237061	3300023258	Soil	MTRSFSFVSPTIGRLSRLCAASGAAWRRFGAWSGKIAAALRDPEPQSPEDYEREL
Ga0208457_10579681	3300025812	Peatland	MMYVYQNYQLTNSRLPMTRSFDAVSPTIRRISRVRAASGAAWRRIGAWSRKIVAALRDPQPQSPEDYERELRERVFHPPQA
Ga0255351_10561672	3300026456	Soil	MTRDFGAVSPTIGNLLRAFASSSVALQRLFAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQP
Ga0255349_10696592	3300028090	Soil	RTSEAASLTVGRFSRLRAAFGAAWRRFGAWSLKIIAALRDPEPQSPEDYERELRERVFHPPQA
Ga0302267_103614152	3300028745	Bog	MTRDFGAVSPTIGNLLRAYAASGVALQRLFAWGGKIVAALRDPEPQSPEDYERELRERVFLPPQP
Ga0302198_104138171	3300028765	Bog	LPMTRDFGAVSPTIGNLLRAFASSSVALQRLFAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQP
Ga0302146_101884271	3300028867	Bog	MHYVYQNCQLTNSRLPMTRDFGAVSPTIGNLLRAFASSSVALQRLFAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQP
Ga0311361_103439691	3300029911	Bog	MTRDFGAVSPTIGNLLRAFASSSVALQRLFAWGGKIVAALRDPEPQSPEDYE
Ga0311343_106934411	3300029953	Bog	DFGAVSPTIGNLLRAFASSSVALQRLFAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQP
Ga0311342_107369701	3300029955	Bog	MTRDFGAVSPTIGNLLRAFASSSVALQRLFAWGGKIVAALRDPEPQSPEDYEREL
Ga0302190_101203222	3300029988	Bog	MTRDFGAVSPTIGNLLRAYAASGVALQRLFAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQ
Ga0311337_105467421	3300030000	Fen	MTRAFHVVSDAIARIFAVHGAPGAAWRRLRVWGGKFVAALKDPQPQSPEDYERELRERVFHPPQA
Ga0265330_100255542	3300031235	Rhizosphere	MTRGFGAVSPTIGKLLRACAASGVALQRFAAWSGKIVAALRDPEPQSPEDYERELRERVFHPPQA
Ga0265330_100414193	3300031235	Rhizosphere	MNVPFGAVSQTIGRISLRRVTSRTLMRIGAWAGKIVAALRDPAPQSPEDYERELRERVFHPPQA
Ga0265330_100504012	3300031235	Rhizosphere	MSRGFGAVSPTIGKLLRARAASGVALQRLAAWSRKIVAALRDPEPQSPEEYERELRERVFHPPQA
Ga0265328_100115604	3300031239	Rhizosphere	MSQSFGAVSLTNGKISRARAALRRLGAWGGKVVAALRDPEPQSAEDYERELRERVFHPPQ
Ga0265328_100707741	3300031239	Rhizosphere	MTRAFGAVSPTIGKLLRAYAASGVALRRLSAWSGKIVAALRDPEPQSPEDYERELRERVFHPPQA
Ga0265325_100056044	3300031241	Rhizosphere	MSQGFGAVSPVIGKLLRACAASGVALQRLAAWSGKIVAALRDPEPQSPEDYERELRERVFYPPQA
Ga0265325_100342592	3300031241	Rhizosphere	MTRSFGAVSLIGKVLRAYAASGVGLRRFGVWSGKIVAALRDPEPQSPEDYERELRERVFHPPQA
Ga0265325_101068771	3300031241	Rhizosphere	MTRSFDPRSPTIAGRFSVRAAWRRVSAWSARIVAALRDPQPQSPEDYERELRERVFHPPH
Ga0265329_101353931	3300031242	Rhizosphere	TRNHDALSPTLGWFSRLRAASGAAWRRFGAWGANLVAALRDPQPQSPEDYERELRERVFLPPQP
Ga0265339_100065575	3300031249	Rhizosphere	MTRAFGAVSPTIGKLLRAYAASGVALRRLSAWSGKIVAALRDPEPQSPEDYERELRERVFHPPQP
Ga0265339_102842181	3300031249	Rhizosphere	MNVPFGAVSQTIGRISLRRVTSRTLMRIGAWAGKIVAALRDPAPQSPEDYER
Ga0265331_104281621	3300031250	Rhizosphere	RHSALALRSLMQYIYQNCQLTNLRLLMSQGFGAVSPVIGKLLRACAASGVALQRLAAWSGKIVAALRDPEPQSPEDYERELRERVFYPPQA
Ga0265316_108141032	3300031344	Rhizosphere	MTRAFGAVSPTIGKLLRAYAASGAALQRLFAWSGKILAALRDPEPQSPEDYERELRERVFLPPQP
Ga0302320_113150992	3300031524	Bog	MTRGFGAASPTIGKLLRAYAASGVALQRLSAWSGKIVAALRDPEPQSPEDYERELRERVFHPPQP
Ga0265313_102642212	3300031595	Rhizosphere	MTRNHDALSPTLGWFSRLRAASGAAWRRFGAWGANVVAALRDPQPQSPEDYERELRERVFLPPQP
Ga0265314_100435693	3300031711	Rhizosphere	MSQSFGAVSLTNGKISRARAALRRLGAWGGKVFAALRDPEPQSAEDYERELRERVFHPPQ
Ga0265342_106251591	3300031712	Rhizosphere	MTRNHDALSPTLGWFSRLRAASGAAWRRFGAWGANVVAALRDPQPQSPEDYERELR
Ga0316219_11794411	3300031759	Freshwater	FGAFSQTIERIVLRPFTSSAAFRRFGAWAGKIVAALRDPAPQSPEDYERELRERVFHPPQ
Ga0302319_102279683	3300031788	Bog	RDFGAVSPTIGNLLRAFASSSVALQRLFAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQP
Ga0302319_103881831	3300031788	Bog	FGAVSLTIGRISRARAAAWRRFGAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQA
Ga0316220_10552172	3300031884	Freshwater	MNVLFGAFSQTIERIVLRPFTSSAAFRRFGAWAGKIVAALRDPAPQSPEDYERELRERVFHPPQA
Ga0316231_12460711	3300032722	Freshwater	CLSTLSTNKFEAVMNVLFGAFSQTIERIVLRPFTSSAAFRRFGAWAGKIVAALRDPAPQSPEDYERELRERVFHPPQA
Ga0326727_100710344	3300033405	Peat Soil	MSRGSHAGWLAARRISRLRAAPGAAWRRLGAWCQKIFAALKDPEPLSPEDYERELRERVFHPPQP
Ga0371489_0013062_4193_4390	3300033755	Peat Soil	MTRSVGAVLLTFAKIFRVRAASGAAWRRLGAWSRKFVVALRDPEPQSPEDYERELRERVFHPPQA
Ga0371489_0322075_339_536	3300033755	Peat Soil	MTRAFDVVSDAIGRISGARAAPGAAWRRLLAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQA
Ga0371487_0455605_301_498	3300033982	Peat Soil	MTRSFGAGSLTIKRFSRARAATGAAWRRFGAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQA
Ga0370492_0001999_4948_5232	3300034282	Untreated Peat Soil	MWPAHLELALGQLMKYFYQNCQLINSRQQMTRSFGAVSPTIGKLLRAYAASRVALRRLGGWSGKILAALRDSEPQSTEDYERELRERVFLPPQP
Ga0370492_0231868_43_288	3300034282	Untreated Peat Soil	MHYVYQNCQLTNSRLPMTRDFGAVSPTIGNLLRAYAASGVALQRLFAWGGKIVAALRDPEPQSPEDYERELRERVFHPPQP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086466

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences