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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F086526 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 110 |
| Average Sequence Length | 51 residues |
| Representative Sequence | VTRPRVADDFSTIRARMEELCRERARPRAADDFPTIRARMEELRRER |
| Number of Associated Samples | 94 |
| Number of Associated Scaffolds | 110 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 100.00 % |
| % of genes near scaffold ends (potentially truncated) | 4.55 % |
| % of genes from short scaffolds (< 2000 bps) | 6.36 % |
| Associated GOLD sequencing projects | 92 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.36 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (93.636 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (40.909 % of family members) |
| Environment Ontology (ENVO) | Unclassified (41.818 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (44.545 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 38.67% β-sheet: 0.00% Coil/Unstructured: 61.33% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.36 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 110 Family Scaffolds |
|---|---|---|
| PF02586 | SRAP | 6.36 |
| PF02615 | Ldh_2 | 3.64 |
| PF12697 | Abhydrolase_6 | 2.73 |
| PF07690 | MFS_1 | 2.73 |
| PF03237 | Terminase_6N | 1.82 |
| PF05015 | HigB-like_toxin | 0.91 |
| PF01192 | RNA_pol_Rpb6 | 0.91 |
| PF00805 | Pentapeptide | 0.91 |
| PF13180 | PDZ_2 | 0.91 |
| PF02812 | ELFV_dehydrog_N | 0.91 |
| PF04352 | ProQ | 0.91 |
| PF03279 | Lip_A_acyltrans | 0.91 |
| PF07364 | DUF1485 | 0.91 |
| PF00296 | Bac_luciferase | 0.91 |
| PF02417 | Chromate_transp | 0.91 |
| PF01425 | Amidase | 0.91 |
| PF12969 | DUF3857 | 0.91 |
| PF00512 | HisKA | 0.91 |
| COG ID | Name | Functional Category | % Frequency in 110 Family Scaffolds |
|---|---|---|---|
| COG2135 | ssDNA abasic site-binding protein YedK/HMCES, SRAP family | Replication, recombination and repair [L] | 6.36 |
| COG2055 | Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family | Energy production and conversion [C] | 3.64 |
| COG0154 | Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase | Translation, ribosomal structure and biogenesis [J] | 0.91 |
| COG0334 | Glutamate dehydrogenase/leucine dehydrogenase | Amino acid transport and metabolism [E] | 0.91 |
| COG1357 | Uncharacterized conserved protein YjbI, contains pentapeptide repeats | Function unknown [S] | 0.91 |
| COG1560 | Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis) | Lipid transport and metabolism [I] | 0.91 |
| COG1758 | DNA-directed RNA polymerase, subunit K/omega | Transcription [K] | 0.91 |
| COG2059 | Chromate transport protein ChrA | Inorganic ion transport and metabolism [P] | 0.91 |
| COG2141 | Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase) | Coenzyme transport and metabolism [H] | 0.91 |
| COG3109 | sRNA-binding protein ProQ | Signal transduction mechanisms [T] | 0.91 |
| COG3549 | Plasmid maintenance system killer protein | Defense mechanisms [V] | 0.91 |
| COG4261 | Predicted acyltransferase, LPLAT superfamily | General function prediction only [R] | 0.91 |
| COG5476 | Microcystin degradation protein MlrC, contains DUF1485 domain | General function prediction only [R] | 0.91 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 93.64 % |
| All Organisms | root | All Organisms | 6.36 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300005553|Ga0066695_10721453 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 582 | Open in IMG/M |
| 3300005559|Ga0066700_11111358 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 516 | Open in IMG/M |
| 3300005602|Ga0070762_10703818 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 678 | Open in IMG/M |
| 3300006032|Ga0066696_11039455 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 521 | Open in IMG/M |
| 3300031781|Ga0318547_10411668 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 830 | Open in IMG/M |
| 3300032010|Ga0318569_10212925 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 896 | Open in IMG/M |
| 3300032893|Ga0335069_11699835 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 673 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 40.91% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 11.82% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 8.18% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 8.18% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 6.36% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 4.55% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 3.64% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 3.64% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 1.82% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 1.82% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.82% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 1.82% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.91% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 0.91% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 0.91% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 0.91% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.91% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 0.91% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000364 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
| 3300005176 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 | Environmental | Open in IMG/M |
| 3300005436 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG | Environmental | Open in IMG/M |
| 3300005447 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 | Environmental | Open in IMG/M |
| 3300005553 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 | Environmental | Open in IMG/M |
| 3300005559 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 | Environmental | Open in IMG/M |
| 3300005602 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 | Environmental | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300006032 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 | Environmental | Open in IMG/M |
| 3300009088 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG | Environmental | Open in IMG/M |
| 3300009525 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG | Environmental | Open in IMG/M |
| 3300010048 | Tropical forest soil microbial communities from Panama - MetaG Plot_11 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300011270 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG | Environmental | Open in IMG/M |
| 3300011271 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG | Environmental | Open in IMG/M |
| 3300012189 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG | Environmental | Open in IMG/M |
| 3300012351 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG | Environmental | Open in IMG/M |
| 3300012923 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG | Environmental | Open in IMG/M |
| 3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
| 3300016371 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 | Environmental | Open in IMG/M |
| 3300016404 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 | Environmental | Open in IMG/M |
| 3300016445 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 | Environmental | Open in IMG/M |
| 3300017943 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4 | Environmental | Open in IMG/M |
| 3300018422 | Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T | Environmental | Open in IMG/M |
| 3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
| 3300021170 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M | Environmental | Open in IMG/M |
| 3300021171 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M | Environmental | Open in IMG/M |
| 3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
| 3300021405 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O | Environmental | Open in IMG/M |
| 3300021406 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300022712 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022726 | Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026555 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
| 3300027071 | Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027603 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027610 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027767 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027812 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027846 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300027855 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027884 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes) | Environmental | Open in IMG/M |
| 3300030007 | I_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300031057 | Oak Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031525 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3 | Environmental | Open in IMG/M |
| 3300031546 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23 | Environmental | Open in IMG/M |
| 3300031549 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24 | Environmental | Open in IMG/M |
| 3300031561 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26 | Environmental | Open in IMG/M |
| 3300031573 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111 | Environmental | Open in IMG/M |
| 3300031640 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23 | Environmental | Open in IMG/M |
| 3300031668 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23 | Environmental | Open in IMG/M |
| 3300031679 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23 | Environmental | Open in IMG/M |
| 3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
| 3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
| 3300031724 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20 | Environmental | Open in IMG/M |
| 3300031744 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2) | Environmental | Open in IMG/M |
| 3300031753 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515 | Environmental | Open in IMG/M |
| 3300031763 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29 | Environmental | Open in IMG/M |
| 3300031768 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22 | Environmental | Open in IMG/M |
| 3300031770 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17 | Environmental | Open in IMG/M |
| 3300031781 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20 | Environmental | Open in IMG/M |
| 3300031782 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20 | Environmental | Open in IMG/M |
| 3300031796 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24 | Environmental | Open in IMG/M |
| 3300031797 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23 | Environmental | Open in IMG/M |
| 3300031798 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19 | Environmental | Open in IMG/M |
| 3300031820 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515 | Environmental | Open in IMG/M |
| 3300031832 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25 | Environmental | Open in IMG/M |
| 3300031880 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25 | Environmental | Open in IMG/M |
| 3300031893 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28 | Environmental | Open in IMG/M |
| 3300031897 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16 | Environmental | Open in IMG/M |
| 3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
| 3300031912 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) | Environmental | Open in IMG/M |
| 3300031945 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082 | Environmental | Open in IMG/M |
| 3300031947 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300031962 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515 | Environmental | Open in IMG/M |
| 3300032010 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22 | Environmental | Open in IMG/M |
| 3300032041 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22 | Environmental | Open in IMG/M |
| 3300032055 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23 | Environmental | Open in IMG/M |
| 3300032059 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27 | Environmental | Open in IMG/M |
| 3300032063 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17 | Environmental | Open in IMG/M |
| 3300032065 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20 | Environmental | Open in IMG/M |
| 3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
| 3300032094 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25 | Environmental | Open in IMG/M |
| 3300032174 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05 | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032205 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| 3300032893 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| INPhiseqgaiiFebDRAFT_1055070181 | 3300000364 | Soil | MTPTRAADDFVTIRARMEELRRTTRPRSADDFTTIRTRMEELRRERAPGSAEAVTEVLISARL* |
| JGIcombinedJ26739_1001933122 | 3300002245 | Forest Soil | VTRPRAADDFPIIRARMEELRRVPARPRAADDFAMIRARMEELRRERAQVLAE |
| Ga0066679_102562831 | 3300005176 | Soil | MLLRSPHPRAADDFATIRARMKELRSATRAADDFATIRARMEELRRERAELLARKRSAAW |
| Ga0070713_1020902683 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | VTRPRAADDFPMIRSRMEELRREHARPRAADDFRMIRARMEELRRERA |
| Ga0066689_108754151 | 3300005447 | Soil | ESQENGGNVTRPRAADDFPMIRTRMEELRRERARPRAADDFATIRARMEELRRERAPYCPKRGAVR* |
| Ga0066695_107214531 | 3300005553 | Soil | MTRPRAADDFAMIRARMEELRRERATRAADDFAAIRARMEELRRERAQISVA* |
| Ga0066700_111113581 | 3300005559 | Soil | MTRLRAADDFAVIRARIEELRRERARPRAVDDFGIIRARMEEPRRERAQ |
| Ga0066700_111447532 | 3300005559 | Soil | VTRPRAADDFPTIRTRMEELRRERARPRAADDFATIRARMEELRRER |
| Ga0070762_102821263 | 3300005602 | Soil | VTRPRAADDFPMIRARMEELRRERARPRAADDFSTIRARMEELRREKWTL* |
| Ga0070762_107038181 | 3300005602 | Soil | VTRPRAADDFTTIRARMQELRRERVRPRAADDFATIRARMEELRRERAQASAETRGHRA |
| Ga0066903_1057876022 | 3300005764 | Tropical Forest Soil | VTRPRVADDFSTIRARMEELCRERARPRAADDFPTIRARMEELRRER |
| Ga0066696_110394552 | 3300006032 | Soil | MTRPRAADDFAVIRARMEQLRRERAPRAADDFAAIRAQMEELRRERAQISVA* |
| Ga0099830_118494781 | 3300009088 | Vadose Zone Soil | MLPQSPRPRAADDFATIRTRVEELRHMTRPRAADDFAAIRARMEELRRER |
| Ga0116220_104105641 | 3300009525 | Peatlands Soil | MCPPRAADDFPVIRARMEDLRRERSRPRAADDFRAIRARTEELQRE |
| Ga0126373_122793811 | 3300010048 | Tropical Forest Soil | VTRPRVADDFSTIWAHMEELCRERIGPRAADDFPTI |
| Ga0126378_108754141 | 3300010361 | Tropical Forest Soil | MTRPRAADDFPMIRARMEELRRERARPRAADDFATIRARMEELRRERAKYWPKREAVW* |
| Ga0137391_101498175 | 3300011270 | Vadose Zone Soil | VTRTRAADDFATIRVRMEELRPVTRPRAADDFATIRERVEELRRERAQVL |
| Ga0137393_103938541 | 3300011271 | Vadose Zone Soil | VTRTRAADYFATIRVRMEELRPVTRPRAADDFATIRERVEELRRERAQVL |
| Ga0137388_114200753 | 3300012189 | Vadose Zone Soil | VTQHRAADDFPMIRARMEELRRERARPRAADDFAMIRVRMEELRRERAQV |
| Ga0137386_103002953 | 3300012351 | Vadose Zone Soil | VTRTRAADDFATIRVRMEELRPVTRPRAADDFATIRERVEELRRERAQVLADKHRGSVSG |
| Ga0137359_109384561 | 3300012923 | Vadose Zone Soil | MTRPRIADDFPMIRARMEELRRERARPRAADDFPMIRARM |
| Ga0126369_107277972 | 3300012971 | Tropical Forest Soil | VTRPRVADDFSTIRARMAELCRERTRPRAADDFPTIRARME |
| Ga0182034_105582241 | 3300016371 | Soil | VTIPRVADDFSTIRARMEELCRERARPRAADDFPTIRARMEEL |
| Ga0182034_116940231 | 3300016371 | Soil | VTRPRVADDFSTIRARMEELCRERARPRAADDFPTIRARMEEL |
| Ga0182037_103537541 | 3300016404 | Soil | VTIPRVADDFSTIRARMEELCRERARPRAADDFPTIRARMEELRRERAQVLAEARSRSVI |
| Ga0182038_102611331 | 3300016445 | Soil | MTRSRAADDFPMIRARMEELRRERAGPRAAADFATIRARMEELRRERAKYWPKREAVW |
| Ga0187819_100734283 | 3300017943 | Freshwater Sediment | VPQPRAADDFATIRGRIEELRQVTRPRAADDFATIRARVEELRRERAQLLADR |
| Ga0187819_101453551 | 3300017943 | Freshwater Sediment | MSPPRAADDFPVIRARMDELRREPIRPRAADDFRAIRARMEELRRERAQ |
| Ga0190265_103790651 | 3300018422 | Soil | VPRPRAADDFTVIRARIEELRPVRRPRAADDFETIRGRMEELRRERAQV |
| Ga0210401_103224281 | 3300020583 | Soil | VTQPRAADDFPMIRARLEELRRERARPRAADDFRVIRARME |
| Ga0210400_103150212 | 3300021170 | Soil | VTRPRAADDFPMIRARMEELRRERARPRAADDFSTIRARVEELGRERAQALAE |
| Ga0210405_103133773 | 3300021171 | Soil | VTRPRAADDFPMIRARMEELRRERARPRAADDFSTIRAHVEELG |
| Ga0210388_114349752 | 3300021181 | Soil | MPPLRAADDFPMIRARMEELRRERTQPRAADDFPMIRARMEELRRERAQLSAER |
| Ga0210387_102950904 | 3300021405 | Soil | VTRPRVADDFSTIRARMEELCRERARPRAADDFPTIRARMEELRRERAQVLAEARNRLVI |
| Ga0210387_111601332 | 3300021405 | Soil | APGNGGNVTRPRAADDFTTIRARMEELRRERVRPRAADDFATIRARMEELRRERA |
| Ga0210386_108458492 | 3300021406 | Soil | VTRPRVADDFSTIRARMEELCRERDRPRAADDFPTIRARMEELRRERAQVLAEARSRSVI |
| Ga0210390_102858543 | 3300021474 | Soil | MSPPRAADDFPVIRARMEELRRERIRPRAADDFRVIRARMEELRR |
| Ga0210410_104993802 | 3300021479 | Soil | VTRPRAADDFPMIRARMEELRRERARPRAADDFSTIRARVEELGRE |
| Ga0210410_111186501 | 3300021479 | Soil | VTRPRVADDFSTIRARMEELCRERARPRAADDFPTIRARMEELRREPAQVLAEARSRSVI |
| Ga0126371_118034562 | 3300021560 | Tropical Forest Soil | VTRPRAADDFPMIRARMEELRRERARPRAADDFATIRARMEELRRERAQIL |
| Ga0126371_129093141 | 3300021560 | Tropical Forest Soil | MSRPRAADDFAAIRARMHELRRENLTRPRAADDFATIRTRIDQLRRERTGASPAP |
| Ga0242653_11015692 | 3300022712 | Soil | VTRPRAADDFPMIHAHMLELRRERARSRAADDFATIRARVEELGRERAQALAEARGRSVI |
| Ga0242654_104026842 | 3300022726 | Soil | MTRPRAADDFAVIRARMEQLRRERAPRADDFAAIRARMEELRRERAQISVA |
| Ga0207663_101557601 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | VTRPRAADDFPMIRARMEELRRERARPRAADDFATIRARMEELRRERAQVLAEARGRSVIHPR |
| Ga0207677_122637901 | 3300026023 | Miscanthus Rhizosphere | VPRPRAADDFTAIRARMEELRPGRRPRAADDFETIRRRMEELRRERAQ |
| Ga0179593_12334481 | 3300026555 | Vadose Zone Soil | VTQPRAADDFPMIRARMEELRRERARLRAADDFGIIRARMEELR |
| Ga0209214_10533791 | 3300027071 | Forest Soil | VTRPRAADDFPMIRARMEELRRERARPRAADDFAMIRARMEELRRERAQVLAEARG |
| Ga0209331_10448771 | 3300027603 | Forest Soil | MTRPRAADDFAVIRARMEELRRERATRAADDFAAIRARMEELRRERAQISV |
| Ga0209528_11172192 | 3300027610 | Forest Soil | VSRPRAADDFPMIRSRMEELRREHARPRAADDFRMIRARMEELRRER |
| Ga0209655_101320852 | 3300027767 | Bog Forest Soil | MTRPRAADDFAVIRARIEELRRERVTRVRAADDFAAIRARMEELRSERVLIRQQSRRNSAAV |
| Ga0209656_101520811 | 3300027812 | Bog Forest Soil | VTRPRAADDFPIIRARMEELRRERARPRAADDFSTIRARMEELRRERV |
| Ga0209180_101219183 | 3300027846 | Vadose Zone Soil | VTRTRAADDFATIRVRMEELRPVTRPRAADDFATIRERVEELRRERAQVLADKH |
| Ga0209180_102769192 | 3300027846 | Vadose Zone Soil | VTQPRAADDFPMIRARMEELRRERARPRAADDFAMIRVRMEELR |
| Ga0209693_103690712 | 3300027855 | Soil | VTRPRAADDFPMIRARMEELRRERARPRAADDFSTIRARMEELRRERAQYWPKRGAVR |
| Ga0209275_103295741 | 3300027884 | Soil | VTRPRAADDFPMIRARMEELRRERARPRAADDFSTIRARREELRR |
| Ga0311338_114328562 | 3300030007 | Palsa | MLPQSSRPCAADDFATIRARMEELRPATRPRAADDFAMIRARMDELRRE |
| Ga0170834_1095037851 | 3300031057 | Forest Soil | VTRPRAADDFPMIRARMEELRRERARPRAADDFSTIRARVEELGRERPKHWPKRGAVR |
| Ga0302326_123723942 | 3300031525 | Palsa | MLPQSSRPCAADDFATIRARMEELRPATRPRAADDFAMIRARMDELRRERAQVWA |
| Ga0318538_104867412 | 3300031546 | Soil | VTRPRVADDCSTIRARMEELCREPARPRAADDFPTIRARMEELRRERAQVLAEARSRS |
| Ga0318571_102473892 | 3300031549 | Soil | VTKPRVADDFSMIRARMEELCRERARPRAADDFPTIRARMEELRRERAQVL |
| Ga0318528_106623091 | 3300031561 | Soil | VTRPRTADDFPMIRARMEELRRERARPRAADDFAM |
| Ga0310915_100665141 | 3300031573 | Soil | MTRSRAADDFPMIRARMEELRRERAGPRAADDFATIRARIEELRRERAKYWPKREAVW |
| Ga0318555_106751802 | 3300031640 | Soil | MEDNVTRPRAADDFATIRARMEELRREGARPRAADDFPKIRARMEELRHQRALLARSV |
| Ga0318542_106307431 | 3300031668 | Soil | VTRRRVADDFSTIRARMEELCRERARPRAADDFPAIRARMEELRR |
| Ga0318561_106412742 | 3300031679 | Soil | MTRSRAADDFPMIRARMEELRRERAGPRAADDFATIRARMEELRRERAKYRPKREAVW |
| Ga0318561_106827031 | 3300031679 | Soil | VTIPRVADDFSTIRARMEELCRGRARPRAADDFPTIRARMEELRRE |
| Ga0306917_100365474 | 3300031719 | Soil | MTRSRAADDFPMIRARMEELRRERARPRAADDFATIRARMEELRRERAKYWPKREAVW |
| Ga0306917_111726561 | 3300031719 | Soil | VTRPRTADDFPMIRARMEELRRERARPRAADDFAMIR |
| Ga0307469_116515571 | 3300031720 | Hardwood Forest Soil | VTRPRAADDFPVIRARMEELRGERARPRAADDFPMIRARMEELRRERARVSRS |
| Ga0318500_103408942 | 3300031724 | Soil | MTRSRAADDFPMIRARMEELRRERAGPRAADDFATIRARMEELRRERAKYWPKREAVW |
| Ga0306918_115088861 | 3300031744 | Soil | VTIPRVADDFSTIRARMEELCRERARPRAADDFPTIRA |
| Ga0306918_115745061 | 3300031744 | Soil | VTRPRAADDFPMIRARMEELRRERARPRAADDFAMIRARMEELRRERAQVLA |
| Ga0307477_106225513 | 3300031753 | Hardwood Forest Soil | VTRPRAADDFPMIRARMEELRRERARPRAADDFSTIRARMEELRRECAQV |
| Ga0318537_101799641 | 3300031763 | Soil | VTRPRVADDLSTIRAGMEELCRERARPRAADDFPAIR |
| Ga0318537_103689761 | 3300031763 | Soil | VTRPRVADDCSTIRARMEELCREPARPRAADDFPTIRARMEELRRERAQVLAEARS |
| Ga0318509_106032601 | 3300031768 | Soil | VTKPRVADDFSMIRARMEELCRERARPRAADDFPTIRARMEELR |
| Ga0318521_105537991 | 3300031770 | Soil | VTRPRVADDCSTIRARMEELCREPARPRAADDFPTIRAR |
| Ga0318547_104116682 | 3300031781 | Soil | VTRTRAADDFATIRARMKELSRERAPRAADDFAAIRARMEEFRRERAQ |
| Ga0318547_107867611 | 3300031781 | Soil | VTRPRVADDFSTIRARMEELCRERPRPRAADDFPTIRARMEELRRERTQVLAEARSRSVIYPR |
| Ga0318552_103843201 | 3300031782 | Soil | VTRPRVADDFSTIRARMEELCRERARPRAADDFPTIRARIE |
| Ga0318576_102509493 | 3300031796 | Soil | VTRPRAADDFPVIRARMEELRHQRARPRAADDFPMIRARME |
| Ga0318550_102705841 | 3300031797 | Soil | VTKPRVADDFSMIRARMEELCRERARPRAADDFPTIRARMEELRRERAQVLAEARSRSVIHSRPYH |
| Ga0318523_104420561 | 3300031798 | Soil | VTIPRVADDFSTIRARMEELCRERARPRAADDFPTIRARMEELR |
| Ga0307473_107346103 | 3300031820 | Hardwood Forest Soil | VTRPRAADDFPVIRARMEELRGERARPRAADDFPMIRARMEE |
| Ga0318499_102445022 | 3300031832 | Soil | VTIPRVADDFSTIRARMEELCRERARPRAADDFPTIRARMEELRRERAQVLAEARSRSV |
| Ga0318544_102200302 | 3300031880 | Soil | VTRPRVADDCSTIRARMEELCREPARPRAADDFPTIRARMEELRRERAQVLAEARSRSV |
| Ga0318536_103380862 | 3300031893 | Soil | VTRPRVADDFSTIRARMEELCRERARPRAADDFPTIRARMEELRRERAQVLAEARSRSVIHSRPYH |
| Ga0318520_101335243 | 3300031897 | Soil | VTKPRVADDFSMIRARMEELCRERARPRAADDFPTIRARMEELRRERAQVLAEARSRSVIHSR |
| Ga0306923_124321431 | 3300031910 | Soil | VTRPRVADDFSTIRAHMEELCRERIGPRAADDFPTIRGRWRSC |
| Ga0306921_100208441 | 3300031912 | Soil | VTKPRVADDFSMIRARMEELCRERARPRAADDFPTIRARMEELRRERAQVLAEARS |
| Ga0310913_103488613 | 3300031945 | Soil | VTIPRVADDFSTIRARMEELCRERARPRAADDFPTIRARMEE |
| Ga0310909_104055913 | 3300031947 | Soil | VTIPRVADDFSTIRARMEELCRERARPRAADDFPTIRARMEELRR |
| Ga0310909_113795371 | 3300031947 | Soil | VTRPRVADDFSTIRARMEELCRERARPRAADDFPTIRARMEELRR |
| Ga0306926_114672542 | 3300031954 | Soil | VTKPRVADDFSMIRARMEELCRERARPRAADDFPTIRARMEELRRERAQVLA |
| Ga0307479_110315871 | 3300031962 | Hardwood Forest Soil | VTRPRAADDFSMIRARMEDLRRERARPRAADDFSTTRARME |
| Ga0318569_102129251 | 3300032010 | Soil | MPRVADDFSTIRARMEELCRGRARPRAADDFPTIRARMEELRRERAQVLAEARSRSVIHPRPY |
| Ga0318549_102646991 | 3300032041 | Soil | VTRPRVADDFSTIRARMEELCRERDRPRAADDFPTIRARMEELRRERAQV |
| Ga0318575_104754121 | 3300032055 | Soil | VTRPRVADDFSTIRARMEELCRERARPRAADDFPTIRARREEL |
| Ga0318533_106453451 | 3300032059 | Soil | VTRSRAADDFPMIRARIEELRRERGRPRAADDFAMIRARMEELSRERAQVLAQARGRSL |
| Ga0318504_104720811 | 3300032063 | Soil | VTRRRVADDFSTIRARMEELCRERARPRAADDFPAIRARMEE |
| Ga0318513_105615891 | 3300032065 | Soil | VTRPRVADDFSTIRARMEELCRERARPRAADDFPTIRARMEELR |
| Ga0306924_117330511 | 3300032076 | Soil | VTRPRVADDCSTIRARMEELCREPARPRAADDFPTIRARMEELRRERAQVLAEARSRSVIHSRP |
| Ga0318540_104948492 | 3300032094 | Soil | VTRPRVADDLSTIRAGMEELCRERARPRAADDFPAIRGRMEELRRERVQVLAKAQSRS |
| Ga0307470_115861851 | 3300032174 | Hardwood Forest Soil | VTQPRAADDFPLIRARMEELRRERARPRAADDFRMIRARMEELRHERAQYCPKRGAVR |
| Ga0307471_1033258853 | 3300032180 | Hardwood Forest Soil | VTRPRAADDFPMIRARMEELRRERARPHAADDFAMIRARMEE |
| Ga0307471_1034051281 | 3300032180 | Hardwood Forest Soil | VTRPRAADDFPTIRARMEELRRERARPRAADDFAMIRARME |
| Ga0307472_1009957652 | 3300032205 | Hardwood Forest Soil | VTRPRAADDFPTIRARMEELRRERARPRAADDFAM |
| Ga0307472_1018431691 | 3300032205 | Hardwood Forest Soil | VTRPRAADDFPTIRARMEELRREGVRPRAADDFAIIRARMEEL |
| Ga0306920_1025791431 | 3300032261 | Soil | VTRPRVADDFSTIRAHMEELCRERIGPRAADDFPTIRGRWRSCAALTEARSRSVIHSRPIIVPQVRVRA |
| Ga0335069_116998352 | 3300032893 | Soil | VTRPRAADDFPAIRARMEELRRERIRPRAADDFPAIRARMEELRRERAHGSAERGSRLAIRARP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |