Metagenome Family F086674

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086674
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	57 residues
Representative Sequence	MRKPLTPPRTFTVADAHALADRLERNQRPQSDQAIAVKLIRALLAGRAAGDVIVLQDE
Number of Associated Samples	61
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	65.45 %
% of genes near scaffold ends (potentially truncated)	35.45 %
% of genes from short scaffolds (< 2000 bps)	86.36 %
Associated GOLD sequencing projects	51
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (59.091 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (64.546 % of family members)
Environment Ontology (ENVO)	Unclassified (50.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (64.545 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.40% β-sheet: 9.30% Coil/Unstructured: 59.30%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.64
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.64
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF12071	DUF3551	6.54
PF00999	Na_H_Exchanger	2.80
PF00313	CSD	1.87
PF04052	TolB_N	1.87
PF00135	COesterase	0.93
PF04191	PEMT	0.93
PF07519	Tannase	0.93
PF01809	YidD	0.93
PF13649	Methyltransf_25	0.93
PF00656	Peptidase_C14	0.93
PF01850	PIN	0.93
PF11000	DUF2840	0.93
PF00467	KOW	0.93
PF13340	DUF4096	0.93
PF13565	HTH_32	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	2.80
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	2.80
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	2.80
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	2.80
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	2.80
COG0823	Periplasmic component TolB of the Tol biopolymer transport system	Intracellular trafficking, secretion, and vesicular transport [U]	1.87
COG0759	Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJ	Cell wall/membrane/envelope biogenesis [M]	0.93
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.93
COG4249	Uncharacterized conserved protein, contains caspase domain	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.09 %
All Organisms	root	All Organisms	40.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.09 %
cellular organisms	root	All Organisms → cellular organisms	40.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.09 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.09 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	35.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.09 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	30.00 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.09 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.91 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Moraxellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales	0.91 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.09 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	14.55 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.82 %
Moraxellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae	0.91 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.91 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.91 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.91 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.91 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.09 %
Tardiphaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	9.09 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.55 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	3.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.82 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.91 %
Acinetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	0.91 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	0.91 %
unclassified Rhizobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae	0.91 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	0.91 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.09 %
Tardiphaga robiniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	9.09 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.64 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.82 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	0.91 %
Sphingobium scionense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium scionense	0.91 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.91 %
Rhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium	0.91 %
Acinetobacter calcoaceticus/baumannii complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex	0.91 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.09 %
Tardiphaga robiniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	9.09 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3.64 %
Bradyrhizobium sp. CCBAU 53340	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 53340	2.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.82 %
Methylobacterium sp. J-067	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. J-067	0.91 %
Bradyrhizobium sp. SRS-191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRS-191	0.91 %
Acinetobacter baumannii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	0.91 %
Sphingobium scionense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium scionense	0.91 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.91 %
Rhizobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium	0.91 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002910\|JGI25615J43890_1031267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	880	Open in IMG/M
3300002910\|JGI25615J43890_1099980	Not Available	517	Open in IMG/M
3300002917\|JGI25616J43925_10063455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	1573	Open in IMG/M
3300002917\|JGI25616J43925_10063455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	1573	Open in IMG/M
3300002917\|JGI25616J43925_10066376	Not Available	1532	Open in IMG/M
3300002917\|JGI25616J43925_10086135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1310	Open in IMG/M
3300007255\|Ga0099791_10007405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	4539	Open in IMG/M
3300007255\|Ga0099791_10254492	Not Available	833	Open in IMG/M
3300007258\|Ga0099793_10249339	Not Available	857	Open in IMG/M
3300007258\|Ga0099793_10413835	Not Available	664	Open in IMG/M
3300007788\|Ga0099795_10043869	Not Available	1602	Open in IMG/M
3300007788\|Ga0099795_10068885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	1330	Open in IMG/M
3300007788\|Ga0099795_10112638	Not Available	1080	Open in IMG/M
3300007788\|Ga0099795_10129156	Not Available	1018	Open in IMG/M
3300007788\|Ga0099795_10533272	Not Available	551	Open in IMG/M
3300009038\|Ga0099829_10161758	All Organisms → cellular organisms → Bacteria	1793	Open in IMG/M
3300009143\|Ga0099792_10128713	Not Available	1369	Open in IMG/M
3300009143\|Ga0099792_10370309	Not Available	869	Open in IMG/M
3300009143\|Ga0099792_10386843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	853	Open in IMG/M
3300009143\|Ga0099792_10706845	Not Available	653	Open in IMG/M
3300009143\|Ga0099792_10895334	Not Available	587	Open in IMG/M
3300010159\|Ga0099796_10023966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	1911	Open in IMG/M
3300010159\|Ga0099796_10028824	Not Available	1785	Open in IMG/M
3300010159\|Ga0099796_10220706	Not Available	777	Open in IMG/M
3300010159\|Ga0099796_10418105	Not Available	591	Open in IMG/M
3300010398\|Ga0126383_10433066	Not Available	1360	Open in IMG/M
3300011269\|Ga0137392_11174685	Not Available	625	Open in IMG/M
3300011271\|Ga0137393_10877056	Not Available	766	Open in IMG/M
3300011271\|Ga0137393_10905229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	753	Open in IMG/M
3300011271\|Ga0137393_10905229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	753	Open in IMG/M
3300012199\|Ga0137383_10296941	Not Available	1183	Open in IMG/M
3300012202\|Ga0137363_10419598	Not Available	1116	Open in IMG/M
3300012203\|Ga0137399_11166868	Not Available	648	Open in IMG/M
3300012205\|Ga0137362_10055578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3241	Open in IMG/M
3300012205\|Ga0137362_10266576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1481	Open in IMG/M
3300012205\|Ga0137362_10737882	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300012206\|Ga0137380_10972048	Not Available	727	Open in IMG/M
3300012211\|Ga0137377_10033512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRS-191	4674	Open in IMG/M
3300012361\|Ga0137360_10060791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2760	Open in IMG/M
3300012361\|Ga0137360_11095794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	688	Open in IMG/M
3300012361\|Ga0137360_11383708	Not Available	606	Open in IMG/M
3300012362\|Ga0137361_10242001	Not Available	1642	Open in IMG/M
3300012582\|Ga0137358_10300662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1089	Open in IMG/M
3300012683\|Ga0137398_10239528	Not Available	1206	Open in IMG/M
3300012917\|Ga0137395_10033898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3103	Open in IMG/M
3300012917\|Ga0137395_10139426	Not Available	1651	Open in IMG/M
3300012918\|Ga0137396_10156678	Not Available	1661	Open in IMG/M
3300012918\|Ga0137396_10373602	All Organisms → cellular organisms → Bacteria → Proteobacteria	1056	Open in IMG/M
3300012918\|Ga0137396_10490217	Not Available	911	Open in IMG/M
3300012923\|Ga0137359_11186413	Not Available	651	Open in IMG/M
3300012924\|Ga0137413_10325361	Not Available	1082	Open in IMG/M
3300012924\|Ga0137413_11483524	Not Available	550	Open in IMG/M
3300012925\|Ga0137419_10770285	Not Available	785	Open in IMG/M
3300012925\|Ga0137419_10918133	All Organisms → cellular organisms → Bacteria → Proteobacteria	722	Open in IMG/M
3300012925\|Ga0137419_11886963	Not Available	513	Open in IMG/M
3300012927\|Ga0137416_10816357	Not Available	825	Open in IMG/M
3300012927\|Ga0137416_11933329	Not Available	540	Open in IMG/M
3300012930\|Ga0137407_10232559	Not Available	1665	Open in IMG/M
3300012944\|Ga0137410_10063510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2661	Open in IMG/M
3300012944\|Ga0137410_10643517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	879	Open in IMG/M
3300015054\|Ga0137420_1363064	Not Available	2611	Open in IMG/M
3300015241\|Ga0137418_10261279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1464	Open in IMG/M
3300015241\|Ga0137418_10636473	Not Available	831	Open in IMG/M
3300015242\|Ga0137412_10327621	Not Available	1196	Open in IMG/M
3300020199\|Ga0179592_10352117	Not Available	648	Open in IMG/M
3300020582\|Ga0210395_10689418	Not Available	764	Open in IMG/M
3300021086\|Ga0179596_10094908	Not Available	1345	Open in IMG/M
3300021086\|Ga0179596_10199528	Not Available	973	Open in IMG/M
3300021086\|Ga0179596_10282978	Not Available	824	Open in IMG/M
3300021170\|Ga0210400_10104830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2243	Open in IMG/M
3300021170\|Ga0210400_10253974	Not Available	1438	Open in IMG/M
3300021170\|Ga0210400_10381429	Not Available	1162	Open in IMG/M
3300021170\|Ga0210400_10431178	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300021479\|Ga0210410_10350797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. J-067	1323	Open in IMG/M
3300024288\|Ga0179589_10191760	Not Available	890	Open in IMG/M
3300026304\|Ga0209240_1019196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 53340	2611	Open in IMG/M
3300026304\|Ga0209240_1019196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 53340	2611	Open in IMG/M
3300026304\|Ga0209240_1063340	Not Available	1382	Open in IMG/M
3300026304\|Ga0209240_1193408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	615	Open in IMG/M
3300026319\|Ga0209647_1063837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 53340	1900	Open in IMG/M
3300026319\|Ga0209647_1139993	Not Available	1054	Open in IMG/M
3300026319\|Ga0209647_1213503	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300026320\|Ga0209131_1381270	Not Available	526	Open in IMG/M
3300026340\|Ga0257162_1041449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300026355\|Ga0257149_1017178	All Organisms → cellular organisms → Bacteria → Proteobacteria	973	Open in IMG/M
3300026355\|Ga0257149_1019970	Not Available	912	Open in IMG/M
3300026355\|Ga0257149_1030778	Not Available	753	Open in IMG/M
3300026356\|Ga0257150_1000038	All Organisms → cellular organisms → Bacteria	10544	Open in IMG/M
3300026356\|Ga0257150_1002096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium scionense	2723	Open in IMG/M
3300026359\|Ga0257163_1051066	All Organisms → cellular organisms → Bacteria → Proteobacteria	659	Open in IMG/M
3300026360\|Ga0257173_1071439	Not Available	513	Open in IMG/M
3300026475\|Ga0257147_1015076	Not Available	1052	Open in IMG/M
3300026489\|Ga0257160_1040233	Not Available	791	Open in IMG/M
3300026494\|Ga0257159_1007916	Not Available	1617	Open in IMG/M
3300026499\|Ga0257181_1088604	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300026508\|Ga0257161_1016921	Not Available	1372	Open in IMG/M
3300026551\|Ga0209648_10073341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga → Tardiphaga robiniae	2875	Open in IMG/M
3300026551\|Ga0209648_10402810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	896	Open in IMG/M
3300026551\|Ga0209648_10669515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	567	Open in IMG/M
3300026555\|Ga0179593_1297253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2785	Open in IMG/M
3300026557\|Ga0179587_10808248	Not Available	618	Open in IMG/M
3300027643\|Ga0209076_1159927	Not Available	628	Open in IMG/M
3300027671\|Ga0209588_1026440	Not Available	1843	Open in IMG/M
3300027846\|Ga0209180_10372591	Not Available	812	Open in IMG/M
3300027903\|Ga0209488_10214415	Not Available	1449	Open in IMG/M
3300027903\|Ga0209488_10756501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → unclassified Rhizobiaceae → Rhizobiaceae bacterium	692	Open in IMG/M
3300028536\|Ga0137415_10039850	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4596	Open in IMG/M
3300028536\|Ga0137415_10493236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1032	Open in IMG/M
3300031715\|Ga0307476_10331337	Not Available	1119	Open in IMG/M
3300031910\|Ga0306923_10495693	Not Available	1382	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	65.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.09%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.45%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	64.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.27%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	15.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25615J43890_10312673	3300002910	Grasslands Soil	AAPVCGPPGQPVTRKKTTVTAADAHALADRLERNQRPQSDQAMAAKLIRALLADRAAGDVIVLQEE*
JGI25615J43890_10999801	3300002910	Grasslands Soil	PAPSSPFTFTFTVADAHALADRLERNQRPQSDQAMAVKLIRALLAGRAASDIIVLQDE*
JGI25616J43925_100634551	3300002917	Grasslands Soil	MPKPLVTPRAFMVADAHALADRLERNQRPQSDQAMAVKLIRALLAGRAAGDNITLQDG*
JGI25616J43925_100634553	3300002917	Grasslands Soil	VTRKKTTVTAADAHALADRLERNQRPQSDQAMAAKLIRALLADRAAGDVIVLQEE*
JGI25616J43925_100663762	3300002917	Grasslands Soil	LSKSPAPPRSFTVADAHALADRLERNQRPQSDQAVAVKLIRALLAGRAASDIIVLQDE*
JGI25616J43925_100861352	3300002917	Grasslands Soil	MRKTLTPPRHFTATDAHALADRLERNQRPQSDQATAVKLIRALLAGRAAGHTIMEDE*
Ga0099791_100074054	3300007255	Vadose Zone Soil	VSKSSAPPRHFTTADAHALADRLERNQRPQSDQAMAVKLIRALLAGRAAGDIIVLDD*
Ga0099791_102544921	3300007255	Vadose Zone Soil	LSKSSTLARSFTVADAHALADRLARNQRPQSDQAMAAKLIRALLAGRASGDVIVLQDE*
Ga0099793_102493393	3300007258	Vadose Zone Soil	LSKPLTPPRHFTIADAHALADRLERNQRPQSDQAMAVKLIRALLAGRAASDVIVLQDE*
Ga0099793_104138352	3300007258	Vadose Zone Soil	MRKPLTPPRTFTVADAHALADRLERNQRPQSDQAIAVKLIRALLAGRAAGDVIVLQDE*
Ga0099795_100438693	3300007788	Vadose Zone Soil	LNKSPIPPRTFTVADAHALADRLERNQRPQSDQAMAVKLIRALLASRAAGVSITLQDE*
Ga0099795_100688854	3300007788	Vadose Zone Soil	MRKPLTPPRTFTVADAHALADRLERNQRQQSDQAIAAKLIRALLAGRATGDI
Ga0099795_101126384	3300007788	Vadose Zone Soil	LTWRRTTLSKPLAPPRAFTVADAHALANRVERNQRPQSEQAMAVKLIRALLAGRAAGDVIVVQDE*
Ga0099795_101291562	3300007788	Vadose Zone Soil	MRKTLTPPRHFTAADAHALADRLERNQRPQSDQATAVKLIRALLAGRAAGHTIMEDE*
Ga0099795_105332721	3300007788	Vadose Zone Soil	ATSSTLARTFTVADAHALADRLERNQRLQSDQAMAVKLIRALLAGRAAGEVIVLQGE*
Ga0099829_101617582	3300009038	Vadose Zone Soil	MTLSKSSALARTMTGADAHALADRLERNQRPQSDQAMAAKLIRALLAGRAAGDIIVLQDE
Ga0099792_101287135	3300009143	Vadose Zone Soil	MRKPVTPPRAFTAAAHALADRLERNQRPQSDGAMASKLIRALLAGRAAGEIIVMRDE*
Ga0099792_103703092	3300009143	Vadose Zone Soil	FTAADAHALADRLERNQRPQSDQATAVKLIRALLAGRAAGHTIMEDE*
Ga0099792_103868432	3300009143	Vadose Zone Soil	LSKSPTPPRTFTVADAHALADRLERNQRPQSDQAIAVKLIRALLAGRTVGDVIALQVD*
Ga0099792_107068452	3300009143	Vadose Zone Soil	MRAASSTLARTFTVADAHALADRLERNQRPQSDQAMAAKLIRALLAGRAPADVIVLQDD*
Ga0099792_108953341	3300009143	Vadose Zone Soil	LSKSLTPPRAFTLADAHALADRLERNQRSQSDQATAVKLIRALLASRAAGDIIEQGE*
Ga0099796_100239661	3300010159	Vadose Zone Soil	MRKPLTPPRTFTVADAHALADRLERNQRPQSDQAIAVKLIRALLADRAAGDVIVLQDE*
Ga0099796_100288245	3300010159	Vadose Zone Soil	MTMRKPVTPPRAFTAAAHALADRLERNQRPQSDGAMASKLIRALLAGRAAGEIIVMRDE*
Ga0099796_102207062	3300010159	Vadose Zone Soil	LNKSPIPPRTFTVADAHALADRLVRNQRPQSDQAMAVKLIRALLASRAAGVSITLQDE*
Ga0099796_104181051	3300010159	Vadose Zone Soil	MTLGKSPTPPHAFTVADAHALADRLERNQRPQSDQAMAAKLIRALLAGRAPGDIIVLQGE
Ga0126383_104330662	3300010398	Tropical Forest Soil	MTVPKSPTPPRGFTAADAHALADRLERNQRPRSDQALAAKLIQALLARRAASDVIVMQNE
Ga0137392_111746851	3300011269	Vadose Zone Soil	MTLSKSSTVPRDFTAADAHALADRLERNQRPQSDQATALKLIRALLAGRAAGDVIVLRDE
Ga0137393_108770561	3300011271	Vadose Zone Soil	MRKPSTPPRTLTAADAHALADRLERNQRPQSDQAIAVKLIRALLAGRAAGDVIVLQDE*
Ga0137393_109052291	3300011271	Vadose Zone Soil	KTTVTAADAHALADRLERNQRPQSDQAMAAKLIRALLADRAAGDVIVLQEE*
Ga0137393_109052293	3300011271	Vadose Zone Soil	MRKPLTPPRTFTVADARALADRLERNQRQQSDQAIAAKLIRALLAGRAADDIIGLQDE*
Ga0137383_102969411	3300012199	Vadose Zone Soil	MTLSKSPTPPRTLTVADAHALADRLERSQRSQSDQAMAVTLIRALLAGRAAGDMIVVQDE
Ga0137363_104195983	3300012202	Vadose Zone Soil	MTMRKPPAAPPCTFTSSDAHALADRLERNQRPQSDQAMAAKLIRALLAGRAAGDI
Ga0137399_111668681	3300012203	Vadose Zone Soil	RATWRRTTLSKSSTLARSFTVADAHALADRLARNQRPQSDQAMAAKLIRAFLAGRAAADVIVLQDE*
Ga0137362_100555781	3300012205	Vadose Zone Soil	ATAATALEENASSKSPTPTRAFTVADAHAVADRLERNQRPQSDQAMAAKLIRALLAGRAAGATIELQGE*
Ga0137362_102665762	3300012205	Vadose Zone Soil	MTMRKTPAPPHTLTAADAHALADRLERNQRPQSDQAMAAKLIRVLLAGRAAGDTIALQDG
Ga0137362_107378821	3300012205	Vadose Zone Soil	LSKSPTASRTFTAADAHALANRLERNQSSQGDQAMAAKLIRALLAGRAAGDVIV
Ga0137380_109720483	3300012206	Vadose Zone Soil	FRPRTFTAADAHALADRLERSQRSQSDQAMAVTLIRALLAGRAAGDVITVHDE*
Ga0137377_100335124	3300012211	Vadose Zone Soil	LSKSSASPRHFTTADAHALADRLERNQRPQSDQAMAVKLIRALLAGRAAGDIIVLDD*
Ga0137360_100607911	3300012361	Vadose Zone Soil	PPRTFTVADAHALADRLERNQRPPSDQTMAAKLIRALLAGRVADDVIVLQGG*
Ga0137360_110957942	3300012361	Vadose Zone Soil	MRKPFTPPRTFTVADAHALADRLERNQRPQSDQAIAVKLIRALLAGRAAGDVIVLQDE*
Ga0137360_113837082	3300012361	Vadose Zone Soil	ERMTMRKTPAPPHTLTAADAHALADRLERNQRPQSDQAMAAKLIRVLLAGRAAGDTIALQDG*
Ga0137361_102420011	3300012362	Vadose Zone Soil	MTLSKSPTPPRTLTVADAHALADRLERSQRSQSDQAMSVKLIRALLAGRAAGDMIVVQDE
Ga0137358_103006623	3300012582	Vadose Zone Soil	MRKPFTPPRTFTVADAHALADRLERNQGPQSDQAIAVKLIRALLAGRAAGDVIVLQDE*
Ga0137398_102395281	3300012683	Vadose Zone Soil	MRKPLTPPSNFTVADAHALADRLERNQRPQSDQAIAVKLIRALLAGRAAGDVIVLQDE*
Ga0137395_100338985	3300012917	Vadose Zone Soil	LSKPLAPPRAFTVADAHALANRVERNQRPQSEQAMAVKLIRALLAGRAAGD
Ga0137395_101394264	3300012917	Vadose Zone Soil	MTMRKPPAAPPRTFTASDAHALADRLERNQRPQSDQAMAAKLIRALLAGRAAGDIVVRSLAELGE*
Ga0137396_101566783	3300012918	Vadose Zone Soil	LSKPPTPPRTFTVADAHALADRLERSQRSQSDQAMAVKLIRALLAGRAAGDIIEGE*
Ga0137396_103736021	3300012918	Vadose Zone Soil	MILSKSSTPPRTFTAADALALADRLERNQRSQGDQAMAVKLIRALLAGRGAGDVIMQNE*
Ga0137396_104902171	3300012918	Vadose Zone Soil	MLSKSPIPPRTFTVADAHALADRLERNQRPQNDEAMAVKLIRALFAGRGASDVIVLQDE*
Ga0137359_111864131	3300012923	Vadose Zone Soil	MSVQNCTIPAADAHALADRLERNQRPQSDQAIAAKLIRALRAGRAASDVIELRDE*
Ga0137413_103253611	3300012924	Vadose Zone Soil	SKSPTPPRTFTAADAHALADRLERSQRPQSDQAMAAKLIRALLAGRAPADVIVLQDD*
Ga0137413_114835241	3300012924	Vadose Zone Soil	MRKPLTPPRTFTVADAHALADRLELNQRPQSDQAIAVKLIRALLAGRAAGDVIQDE*
Ga0137419_107702851	3300012925	Vadose Zone Soil	PRTFTVADAHALADRLERNQRPQSDGAMAGKLIRALLVGRAAGDVIVLQGE*
Ga0137419_109181332	3300012925	Vadose Zone Soil	MRATSSTLARTFTVADAHALADRLERNQRLQSDQAMAVKLIRALLAGRAAGEVIVLQGE*
Ga0137419_118869631	3300012925	Vadose Zone Soil	LNKSPIPPRTFTVADAHALADRLERNQRPQSDQAMAVKLIRALLASRAAGVSITLQ
Ga0137416_108163572	3300012927	Vadose Zone Soil	MRKPVTPPRAFTAAAHALAERLERNQRPQSDGAMASKLIRALLAGRAAGEIFVMRDE*
Ga0137416_119333292	3300012927	Vadose Zone Soil	LSKSPTPPRTFTVADAHALADRLERNQRSQSDQSLAAKLIRALLAGRAAVDVIVLQGD*
Ga0137407_102325595	3300012930	Vadose Zone Soil	MTLSKSPTPPRTLTVADAHALADRLERSQRSQSDQAMAVTLIRALLAGRAAGDVIVVQDE
Ga0137410_100635105	3300012944	Vadose Zone Soil	MTLGKSPTPPHAFTVADAHALADRLERNQRPQSDQAMAVKLIRALLAGRAAGDIIVLDD*
Ga0137410_106435171	3300012944	Vadose Zone Soil	LSKSPTPPRPFTVADAHAVADRLERNQRPQSDQAIAAKLIRALRAGRAASDVIELRDE
Ga0137420_13630647	3300015054	Vadose Zone Soil	VSKSSAPPRHFTTADAHALADRLERNQRPQSDQAMAVKLIRALLAGRAA
Ga0137418_102612792	3300015241	Vadose Zone Soil	LNKSPIPPRTFTVADAHALADRLERNQRPQSDQAMAVKLIRALLAGRAAGDIIVLDD*
Ga0137418_106364732	3300015241	Vadose Zone Soil	GLTWRTTTLSKSPTPPRPFTVADAHALADRLERNQRPQSDGAMAGKLIRALLVGRAAGDVIVLQGE*
Ga0137412_103276214	3300015242	Vadose Zone Soil	MRKPLTPPRTFTVADAHALADRLERNQRPQSDQAIAVKLIRALLAGRAAGDVIQDE*
Ga0179592_103521172	3300020199	Vadose Zone Soil	LSKSPTPPRTFTVADAHALADRLERNQRPQSDQAIAVKLIRALLAGRVAGGAFRVE
Ga0210395_106894181	3300020582	Soil	MPKPPATTRAFTVADAHALADRLERNQRSQSDQATTVKLIRALLAGRTAGDIIDLQDG
Ga0179596_100949083	3300021086	Vadose Zone Soil	PHTFTTADAHALTDRLERNQRPQSDGAMASKLIRALLAGRAAGEIIVMRDE
Ga0179596_101995281	3300021086	Vadose Zone Soil	LNKSPIPPRTFTVADAHALADRLERNQRPQSDQAMAVKLIRALLASRAAGVSITLQDE
Ga0179596_102829782	3300021086	Vadose Zone Soil	LSKSPTPPRTFTVADAHALADRLERNQRPQSDQAIAVKLIRALLAGRTVGDVIALQVD
Ga0210400_101048304	3300021170	Soil	MTLSKPLTPPRTFTVADAHALADRLERNQRPQSDQAMAAKLIRALLAGRAADDVIVLQDE
Ga0210400_102539742	3300021170	Soil	MTIRKPLTPPRTTIAADAHRLADRLERNPRPQSDQAMAAKLIRALLAGRTADDVIVLQDE
Ga0210400_103814292	3300021170	Soil	MRKPPTPPRSFTVADAHALADRRERNQRPQSDHAMAATLIRALLAGRAANDVILMQGE
Ga0210400_104311781	3300021170	Soil	MRKSLTPPRTMMAADAHALADRLERNQRPQSDQAMAAKLIRALLPGRAAGDVIVLQDE
Ga0210410_103507972	3300021479	Soil	LPKLLTPPRTFTVDDADALVDRLERNQRPQSDQVTAAKLIRALFVGRSAGERYCAAGRVIPSA
Ga0179589_101917602	3300024288	Vadose Zone Soil	MRAASSTLARTFTVADAHALADRLERNQRPQSDQAMAAKLIRALLAGRAPADVIVLQDD
Ga0209240_10191962	3300026304	Grasslands Soil	VTRKKTTVTAADAHALADRLERNQRPQSDQAMAAKLIRALLADRAAGDVIVLQEE
Ga0209240_10191964	3300026304	Grasslands Soil	MPKPPAPPRTFTVADAHALADRLERNQRQQSDQAIAAKLIRALLAGRAAGDIIGLQDE
Ga0209240_10633403	3300026304	Grasslands Soil	PAPSSPFTFTFTVADAHALADRLERNQRPQSDQAMAVKLIRALLAGRAASDIIVLQDE
Ga0209240_11934081	3300026304	Grasslands Soil	MRKPLTKPCSFTAADAHALADRLDRNQHPQSDQATAAKLIRALLAGRTAGDVIV
Ga0209647_10638375	3300026319	Grasslands Soil	TVTAADAHALADRLERNQRPQSDQAMAAKLIRALLADRAAGDVIVLQEE
Ga0209647_11399932	3300026319	Grasslands Soil	LSKSPAPSSPFTFTFTVADAHALADRLERNQRPQSDQAMAVKLIRALLAGRAASDIIVLQDE
Ga0209647_12135032	3300026319	Grasslands Soil	MRKPLPPPRTFTVADAHALADRLERNQRPQSDQAIAVKLIRALLAGRAAGDVIVLQDE
Ga0209131_13812702	3300026320	Grasslands Soil	PPRAFTAAAHALADRLERNQRPQSDGAMASKLIRALLAGRAAGEIIVMRDE
Ga0257162_10414492	3300026340	Soil	MTLSKPPTPHRTFTAADAHALADRLERNQRPQSDQAMAAKLIRALLAGRAAGDIIVLQDE
Ga0257149_10171781	3300026355	Soil	MRATSSTLARTFTVADAHALADRLERNQRLQSDQAMAVKLIRALLAGRAAGEVIVLQGE
Ga0257149_10199703	3300026355	Soil	LSKPLAPPRAFTVADAHALADRLERNQRPQSDGAMAAKLIRALLAGRAADDI
Ga0257149_10307781	3300026355	Soil	LSKPLTPPRHFTIADAHALADRLERNQRPQSDQAMAVKLIRALLAGRAASDVIVLQDE
Ga0257150_10000388	3300026356	Soil	MRKTLTPPRHFTAADAHALADRLERNQRPQSDQATAVKLIRALLAGRAAGHTIMEDE
Ga0257150_10020962	3300026356	Soil	LSKPLAPPRAFTVADAHALADRLERNQRPQSDGAMAAKLIRALLAGRAADDIITMQDG
Ga0257163_10510661	3300026359	Soil	SPTPPRTFTVADAHALADRLERNQRPQSDQAIAVKLIRALLAGRTVGDVIALQVD
Ga0257173_10714392	3300026360	Soil	LSKPLTPPRHFTIADAHALADRLERNQRPQSDQAMAVKLIRALLAGRAA
Ga0257147_10150761	3300026475	Soil	LTPPRTFTVADAHALADRLERNQRPQSDQAIAVKLIRALLAGRVAGDVIVLQDE
Ga0257160_10402332	3300026489	Soil	MRKPVTPPRAFTAAAHALADRLERNQRPQSDGAMASKLIRALLAGPAAGEIIVMRDE
Ga0257159_10079163	3300026494	Soil	MRKTLTPPRHFTAADAHALADRLERNQRPQSDQATAVKLIRALLAGRAAGDVIVLRDE
Ga0257181_10886041	3300026499	Soil	LSKSPIPPRPFTAADAHALADRLERNQRPQSDQATAVKLIRALLAGRAAGH
Ga0257161_10169213	3300026508	Soil	MRKPVTPPRAFTAAAHALADRLERNQRPQSDGAMASKLIRALLAGRAAGEIIVMRDE
Ga0209648_100733414	3300026551	Grasslands Soil	MRKPLTKPCSFTAADAHALADRLDRNQHPQSDQATAAKLIRALLAGRTAGDVIVLQGD
Ga0209648_104028103	3300026551	Grasslands Soil	MRKPLTPPRTFTVADAHALADRLERNQRPQSDQAFAVKLIRALLAGRAAGDVIVLQDE
Ga0209648_106695151	3300026551	Grasslands Soil	VTRKKTTVTAADAHALADRLERNQRPQSDQAIAAKLIRALLADRAAGDVIVLQ
Ga0179593_12972532	3300026555	Vadose Zone Soil	VSKSSAPPRHFTTADAHALADRLERNQRPQSDQAMAVKLIRALLAGRAAGDIIVLDD
Ga0179587_108082481	3300026557	Vadose Zone Soil	LNKTPIPPRTFTVADAHALADRLERNQRPQSDQAMAVKLIRALLAGRAAGDIIVLDD
Ga0209076_11599272	3300027643	Vadose Zone Soil	LTPPRTFTVADAHALADRLERNQRPQSDQAIAVKLIRALLAGRAAGDVIVLQDE
Ga0209588_10264404	3300027671	Vadose Zone Soil	LSKSHTPTRAFTVADAHAVADRLERNQRPQSDQAMAAKLIRAFLAGRAAADVIVLQDD
Ga0209180_103725912	3300027846	Vadose Zone Soil	MTLSKSSTVPRDFTAADAHALADRLERNQRPQSDQARAAKLIRALLAGRAGGDVIVLQGG
Ga0209488_102144155	3300027903	Vadose Zone Soil	LSKPLTPPRHFTIADAHALADRLERNQRPQSDQAMAVKLIRALLAGRA
Ga0209488_107565011	3300027903	Vadose Zone Soil	LSKSPTPPRTFTAADAHALADRLERNQHPQSDQTMAAKLIRALLAGRAAGDIIVLQDD
Ga0137415_100398509	3300028536	Vadose Zone Soil	MRKPLTPPRTFTVADAHALADRLERNQRPQSDQAIAVKLIRALLAGRAAGDVIVLQDE
Ga0137415_104932363	3300028536	Vadose Zone Soil	PLSPPRHFTIADAHALADRLERNQRPQSDQAMAVKLIRALLAGRAASDVIVLQDE
Ga0307476_103313371	3300031715	Hardwood Forest Soil	LSKSSTPPRPFTVADAHALADRLERNQRPQSDQAIAVKVIGALLASRAAGDVIELQGG
Ga0306923_104956931	3300031910	Soil	MKQPSTLTAPRPITVADAHALADRLERNGRPQSDQVMAAKLIRALLGSRAASDTVVVQHN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086674

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences