Metagenome Family F086743

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086743
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	95 residues
Representative Sequence	MKIRQLKRKFGAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDLYV
Number of Associated Samples	87
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	69.09 %
% of genes near scaffold ends (potentially truncated)	28.18 %
% of genes from short scaffolds (< 2000 bps)	80.91 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (26.364 % of family members)
Environment Ontology (ENVO)	Unclassified (33.636 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.33% β-sheet: 27.55% Coil/Unstructured: 56.12%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF04226	Transgly_assoc	10.91
PF00076	RRM_1	10.00
PF13561	adh_short_C2	4.55
PF07110	EthD	3.64
PF03118	RNA_pol_A_CTD	2.73
PF00664	ABC_membrane	1.82
PF13565	HTH_32	1.82
PF07238	PilZ	1.82
PF01161	PBP	0.91
PF02201	SWIB	0.91
PF00072	Response_reg	0.91
PF00496	SBP_bac_5	0.91
PF04392	ABC_sub_bind	0.91
PF00296	Bac_luciferase	0.91
PF00775	Dioxygenase_C	0.91
PF06480	FtsH_ext	0.91
PF01000	RNA_pol_A_bac	0.91
PF13683	rve_3	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	10.91
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	3.64
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	0.91
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.91
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.91
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.91
COG5531	DNA-binding SWIB/MDM2 domain	Chromatin structure and dynamics [B]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	12.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	12.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	12.73 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	8.18 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.91 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	8.18 %
Polaromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas	0.91 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101711239	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300000955\|JGI1027J12803_101956825	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300000955\|JGI1027J12803_102873148	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300005174\|Ga0066680_10286843	All Organisms → cellular organisms → Bacteria	1050	Open in IMG/M
3300005180\|Ga0066685_10477886	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	864	Open in IMG/M
3300005186\|Ga0066676_10061369	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2175	Open in IMG/M
3300005332\|Ga0066388_101842499	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300005445\|Ga0070708_100397495	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300005446\|Ga0066686_10003350	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	7239	Open in IMG/M
3300005468\|Ga0070707_100011088	All Organisms → cellular organisms → Bacteria	8394	Open in IMG/M
3300005552\|Ga0066701_10781221	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300005713\|Ga0066905_100076777	All Organisms → cellular organisms → Bacteria	2176	Open in IMG/M
3300005713\|Ga0066905_101479262	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300005764\|Ga0066903_101443726	All Organisms → cellular organisms → Bacteria	1295	Open in IMG/M
3300006852\|Ga0075433_10790145	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300006903\|Ga0075426_10082654	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2296	Open in IMG/M
3300006903\|Ga0075426_10699680	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300009089\|Ga0099828_10282424	All Organisms → cellular organisms → Bacteria	1492	Open in IMG/M
3300009089\|Ga0099828_11625663	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300009147\|Ga0114129_11665989	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300009147\|Ga0114129_13446564	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300009792\|Ga0126374_10603392	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300009792\|Ga0126374_10832705	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300009815\|Ga0105070_1072197	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300009818\|Ga0105072_1089627	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300009821\|Ga0105064_1079796	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300010043\|Ga0126380_10433052	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300010043\|Ga0126380_10535572	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300010046\|Ga0126384_10206168	All Organisms → cellular organisms → Bacteria	1560	Open in IMG/M
3300010046\|Ga0126384_10206790	All Organisms → cellular organisms → Bacteria	1558	Open in IMG/M
3300010047\|Ga0126382_10271560	All Organisms → cellular organisms → Bacteria	1255	Open in IMG/M
3300010047\|Ga0126382_10772798	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300010048\|Ga0126373_12993371	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300010358\|Ga0126370_10007533	All Organisms → cellular organisms → Bacteria	5621	Open in IMG/M
3300010358\|Ga0126370_11411980	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300010359\|Ga0126376_10883525	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300010360\|Ga0126372_10078643	All Organisms → cellular organisms → Bacteria	2385	Open in IMG/M
3300010360\|Ga0126372_10346202	All Organisms → cellular organisms → Bacteria	1331	Open in IMG/M
3300010360\|Ga0126372_11028434	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	837	Open in IMG/M
3300010360\|Ga0126372_11154404	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300010360\|Ga0126372_11431618	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300010361\|Ga0126378_10864894	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300010366\|Ga0126379_10923133	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300010366\|Ga0126379_12448057	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300010376\|Ga0126381_100874196	All Organisms → cellular organisms → Bacteria	1293	Open in IMG/M
3300010398\|Ga0126383_10120549	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2389	Open in IMG/M
3300010398\|Ga0126383_10425935	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300010398\|Ga0126383_10529509	All Organisms → cellular organisms → Bacteria	1241	Open in IMG/M
3300010398\|Ga0126383_10574527	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300011269\|Ga0137392_10425453	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300012096\|Ga0137389_10142441	All Organisms → cellular organisms → Bacteria	1954	Open in IMG/M
3300012189\|Ga0137388_11426016	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300012204\|Ga0137374_10930608	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300012211\|Ga0137377_10567475	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1072	Open in IMG/M
3300012349\|Ga0137387_10034312	All Organisms → cellular organisms → Bacteria	3298	Open in IMG/M
3300012355\|Ga0137369_10133177	All Organisms → cellular organisms → Bacteria	1994	Open in IMG/M
3300012363\|Ga0137390_10154618	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2280	Open in IMG/M
3300012929\|Ga0137404_10480689	All Organisms → cellular organisms → Bacteria	1106	Open in IMG/M
3300012948\|Ga0126375_11978234	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300012971\|Ga0126369_10232395	All Organisms → cellular organisms → Bacteria	1802	Open in IMG/M
3300012971\|Ga0126369_11228668	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300014154\|Ga0134075_10153503	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	984	Open in IMG/M
3300015264\|Ga0137403_10566686	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300015358\|Ga0134089_10357836	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300016319\|Ga0182033_10013925	All Organisms → cellular organisms → Bacteria	4664	Open in IMG/M
3300016371\|Ga0182034_10803973	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300016422\|Ga0182039_10846038	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300018028\|Ga0184608_10100841	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300018031\|Ga0184634_10115913	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300018053\|Ga0184626_10000615	All Organisms → cellular organisms → Bacteria	11437	Open in IMG/M
3300018076\|Ga0184609_10191087	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300018077\|Ga0184633_10005031	All Organisms → cellular organisms → Bacteria	6056	Open in IMG/M
3300018079\|Ga0184627_10040153	All Organisms → cellular organisms → Bacteria	2394	Open in IMG/M
3300018082\|Ga0184639_10046853	All Organisms → cellular organisms → Bacteria	2228	Open in IMG/M
3300018468\|Ga0066662_10041920	All Organisms → cellular organisms → Bacteria	2838	Open in IMG/M
3300021560\|Ga0126371_10160493	All Organisms → cellular organisms → Bacteria	2317	Open in IMG/M
3300022534\|Ga0224452_1170450	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300025910\|Ga0207684_10096677	All Organisms → cellular organisms → Bacteria	2521	Open in IMG/M
3300025922\|Ga0207646_10032631	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	4711	Open in IMG/M
3300025922\|Ga0207646_10239961	All Organisms → cellular organisms → Bacteria	1637	Open in IMG/M
3300026298\|Ga0209236_1067606	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1706	Open in IMG/M
3300026313\|Ga0209761_1076387	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1754	Open in IMG/M
3300026540\|Ga0209376_1255096	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300027527\|Ga0209684_1079398	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300027846\|Ga0209180_10008114	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	5378	Open in IMG/M
3300027874\|Ga0209465_10087323	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300028792\|Ga0307504_10259623	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300031543\|Ga0318516_10290013	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300031544\|Ga0318534_10522999	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300031545\|Ga0318541_10128721	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1379	Open in IMG/M
3300031545\|Ga0318541_10202454	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300031546\|Ga0318538_10812537	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300031680\|Ga0318574_10271476	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300031680\|Ga0318574_10572627	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300031682\|Ga0318560_10504757	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300031713\|Ga0318496_10148978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas	1277	Open in IMG/M
3300031736\|Ga0318501_10533385	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300031744\|Ga0306918_11063044	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300031747\|Ga0318502_10930779	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300031782\|Ga0318552_10492307	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300031805\|Ga0318497_10393075	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300031820\|Ga0307473_10822850	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300031833\|Ga0310917_10961091	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300031942\|Ga0310916_11018462	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300032076\|Ga0306924_11106143	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300032090\|Ga0318518_10548525	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300032090\|Ga0318518_10603630	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300032180\|Ga0307471_100009227	All Organisms → cellular organisms → Bacteria	6516	Open in IMG/M
3300033289\|Ga0310914_11138819	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300033815\|Ga0364946_136411	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.45%
Host-Associated	Host-Associated	4.55%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.18%
Aquatic	Environmental → Aquatic	7.27%
Plants	Host-Associated → Plants	4.55%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.27%
Sediment	Environmental → Aquatic → Sediment	7.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.55%
Floodplain	Environmental → Terrestrial → Floodplain	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.55%
Loam	Environmental → Terrestrial → Soil → Loam	10.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.55%
Sand	Environmental → Terrestrial → Soil → Sand	2.73%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.55%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.73%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	26.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.36%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.18%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.55%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.55%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.73%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009821	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033815	Sediment microbial communities from East River floodplain, Colorado, United States - 31_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1017112392	3300000364	Soil	MRIRRLKREVGGVIDSVWPPRWTFSMRPRGGDEILVGEEGVLESVKRMGEXLSLTMXYXGRERFGSLQWDAPPSLDAVERVLQTNLGKPIKTIGDLDV*
JGI1027J12803_1019568253	3300000955	Soil	MRIRRLKREVGGVIDSVWPPRWTFSMRPRGGDEILVGEEGVLESVKRMGERLSLTMSYKGRERFGSLQWDAPPSLDAVERVLQTNLGKPIKTIGDLDV*
JGI1027J12803_1028731482	3300000955	Soil	GVIESTWPPLWTFSMYPRGGEEILVGEEGVLESVKRIGEHLSLTMKYKGRERFGSLQWDAPPSLDAVERMLQANLGKPIKTIGDLDVKPVA*
Ga0066680_102868432	3300005174	Soil	MKIRHLKRKMGGVIDSVWPPRWTFSMHPRGGDEILVGDEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVEKVLLANLGQPIKTIGDLDA*
Ga0066685_104778863	3300005180	Soil	MKIRHLKRKVGGVIDSVWPPRWTFSMHPRGGDEILVGEEGVLESVKRMNDRLSLTMKYKGRERFGSLQWDAPPSLDAVERVLL
Ga0066676_100613692	3300005186	Soil	MKIRHLKRKVGGVIDSVWPPRWTFSMHPRGGDEILVGEEGVLESVKRMNDRLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTIGDLDV*
Ga0066388_1018424991	3300005332	Tropical Forest Soil	MKIRRLKRKLGGVIDSVWPPQWTSSIHPRGEDEILVGEEGVLESVKRMSERLCLTMKYKGRERFGNLQWDAPPSLDAVERVLLANLGRPIRTIGDLDV*
Ga0070708_1003974951	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKIRQLKRKFGAVIESTWPPGWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKCRGQERFGSLQWDAPPSLDAVERVLQANLGKPIKVIGDLHV*
Ga0066686_100033509	3300005446	Soil	MKIRHLKRKVGGVIDSVWPPRWTFSMHPRGGDEILVGEEGVLESVKRMNDRLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTVGDLDV*
Ga0070707_1000110882	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRIRHLKRKVGAVIDSVWPPQWTFSMHPRGGDEILVGDEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTIGDLDV*
Ga0066701_107812211	3300005552	Soil	MKIRHLKRKMGGVIDSVWPPRWTFSMHPRGGDEILVGDEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVEKVLLANLGKPIKTIGDLD
Ga0066905_1000767775	3300005713	Tropical Forest Soil	MKIRQLKRKFGAVIESTWPLRRTSSMHPRGELEVLVGEEGTLESVKRIGEHLSLTMKYKGHERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0066905_1014792621	3300005713	Tropical Forest Soil	MKIRQLKRKFGAVIESTWPRRWTSSMHPRGELEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGD
Ga0066903_1014437261	3300005764	Tropical Forest Soil	LKRKFGAVIESTWPPRWTFSMHPRGEVEILVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0075433_107901451	3300006852	Populus Rhizosphere	MRIRRLKREVGGVIDSVWPPRWTFSMHPRGGDEILVGEEGVLESVKRMGERLSLTMSYKGRERFGSLQWDAPPSLDAVERVLQTNLGKPIKTIGDLDV*
Ga0075426_100826542	3300006903	Populus Rhizosphere	MRIRRLKREVGGVIDSVWPPRWTFSMHPRGGDEILVGEEGVLESVKRMGERLSLTMSYKGRERFGSLQWDAPPSLDAVARVLQTNLGKPIKTIGDLDV*
Ga0075426_106996801	3300006903	Populus Rhizosphere	MRIRHLKRKVGAVIDSVWPPPWTFSMHPRGGDEILVGDEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTIGDLDV*
Ga0099828_102824242	3300009089	Vadose Zone Soil	VWPPRWTFSIHPRGAGEILVGEEGVLESVKRMSERLALTMKYKGRERFGSLQWDTPPSLDAVERVLLANLGKPIKTIGDLDV*
Ga0099828_116256631	3300009089	Vadose Zone Soil	LGGVIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERALLANLGKPIKTIGDLDV*
Ga0114129_116659893	3300009147	Populus Rhizosphere	MRIRRLKREVGGVIDSVWPPRWTFSMRPRGGDEILVGEEGVLESVKRMGERLSLTMSYKGRERFGSLQWDAPPSLDAVERV
Ga0114129_134465642	3300009147	Populus Rhizosphere	MRIRHLKRKVGAVIDSVWPPQWTFSMHPRGGDEILVGDEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIQTIGDLD
Ga0126374_106033922	3300009792	Tropical Forest Soil	MRLRQLKRKFGAVIESTWPPRWTFSMHPRGEVEILVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDVYV*
Ga0126374_108327052	3300009792	Tropical Forest Soil	MSDTTGMKPRGATMKIRQLKRKFGAVIESTWPPRWTFSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDTVEKVLQANLGKPIKTIGDLYV*
Ga0105070_10721971	3300009815	Groundwater Sand	MKIRRLKRKLGGVIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERALLANLGKPDW*
Ga0105072_10896271	3300009818	Groundwater Sand	VIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERALLANLGKPIKTIGDLDV*
Ga0105064_10797962	3300009821	Groundwater Sand	RKLGGVIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERALLANLGKPIKTIGDLDV*
Ga0126380_104330522	3300010043	Tropical Forest Soil	MKIRQLKRKFGAVMESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0126380_105355723	3300010043	Tropical Forest Soil	MSDTTGMKPRGATMKIRQLKRKFGAVIESTWPPRWTFSMRPRGEVEILVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0126384_102061682	3300010046	Tropical Forest Soil	MRLRQLKRKFGAVIESTWPPRWTSSMHPRGEVEILVGEEGTLESVKRIGEHLSLTLKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0126384_102067902	3300010046	Tropical Forest Soil	MKIRQLKRKFGAVIESTWPLRRTSSMHPRGELEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKMLQANLGKPIKTIGDLYV*
Ga0126382_102715604	3300010047	Tropical Forest Soil	MRLRQLKRKFGAVIESTWPPRWTFSMHPRGEVEILVGEEGTLESVKRIGEHLSLTLKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0126382_107727981	3300010047	Tropical Forest Soil	MKIRQLKRKFGAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0126373_129933711	3300010048	Tropical Forest Soil	MSDTTGMKPQGATMKIRQLKRKFGAVLESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0126370_100075338	3300010358	Tropical Forest Soil	MKIRQLKRKFGAVIESTWPPRRTSSMHPRGELEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKMLQANLGKPIKTIGDLYV*
Ga0126370_114119801	3300010358	Tropical Forest Soil	KRKLGGVIDSVWPPQWTSSIHPRGEDEILVGEEGVLESVKRMSERLCLTMKYKGRERFGNLQWDAPPSLDAVERVLLANLGRPIRTIGDLDV*
Ga0126376_108835251	3300010359	Tropical Forest Soil	MRIRQLKRKFGAVIESTWPPRWTFSMHPRGEVEILVGEEGTLESVKRIGEHLSLTLKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0126372_100786435	3300010360	Tropical Forest Soil	MKIRHLKRKFEAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0126372_103462022	3300010360	Tropical Forest Soil	MKIRQLKRKFGAVIESTWPPRRTSSMHPRGELEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVQKVLQANLGKPIKTIGDLYV*
Ga0126372_110284342	3300010360	Tropical Forest Soil	KFEAVIESTWPPRWTSSMHPRGEVEVVVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0126372_111544041	3300010360	Tropical Forest Soil	PRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKSIGDLYV*
Ga0126372_114316182	3300010360	Tropical Forest Soil	MKIRRLKRKLGGVIDSVWPPQWTSSIHPRGEDEILVGEEGVLESVKRMSERLCLTMKYKGRERFGNLQWDAPPSLDAVERVLL
Ga0126378_108648941	3300010361	Tropical Forest Soil	RKFGAVIESTWPPRWTSSMHPRGEIEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDVYV*
Ga0126379_109231331	3300010366	Tropical Forest Soil	IRQLKRKFGAVMESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLRWDAPPPLDAVEKVLQANLGKPIKTIGDLYV*
Ga0126379_124480571	3300010366	Tropical Forest Soil	MKPGGATMKIRQLKRKFGAVIESTWPPRWTSSMHPRGEIEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0126381_1008741963	3300010376	Tropical Forest Soil	MRIRQLKRKFGAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKFKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0126383_101205492	3300010398	Tropical Forest Soil	MKPGGATMKIRQLKRKFGAVIESTWPPRWTSSMHPRGEIEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDVYV*
Ga0126383_104259352	3300010398	Tropical Forest Soil	MKIRQLKRKFGAVIESTWPPRRTSSMHPRGELEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0126383_105295093	3300010398	Tropical Forest Soil	QLKRKFGAVIESTWPPRWTFSMRPRGEVEILVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0126383_105745271	3300010398	Tropical Forest Soil	MRLRQLKRKFGAVIESTWPPRWTFSMHPRGEVEILVGEEGTLESVKRIGEHLSLTMNYKGQERFGRLEWDAPPSLDAVEKVLQANLGKPIKTI
Ga0137392_104254532	3300011269	Vadose Zone Soil	VWPPRWTFSIHPRGGDEILVGEEGILESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERALLANLGKPIKTIGDLDV*
Ga0137389_101424412	3300012096	Vadose Zone Soil	VIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMSERLALTMKYKGRERFGSLQWDTPPSLDAVERVLLANLGKPIKTIGDLDV*
Ga0137388_114260161	3300012189	Vadose Zone Soil	MKIRRLKRKLGGVIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRTSERLSLTMKYKGRERFGSLQWDAPPSLDAVERALLANLGKPIKTIGDLDV*
Ga0137374_109306081	3300012204	Vadose Zone Soil	SVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERALLANLGKPIKTIGDLDV*
Ga0137377_105674751	3300012211	Vadose Zone Soil	MRIRHLKRKVGAVIDSVWPPQWTFSMHPRGGDEILVGDEGVLESVKRIGERLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTIGDLDV*
Ga0137387_100343123	3300012349	Vadose Zone Soil	MKIRRLKRKLGGVIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERALLANLGKPIKTIGDLDV*
Ga0137369_101331771	3300012355	Vadose Zone Soil	VWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERALLANLGKPIKTIGDLDV*
Ga0137390_101546183	3300012363	Vadose Zone Soil	VWPPRWTFSIHPRGADAILVGEEGVLESVKRTSERLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTIGDLDV*
Ga0137404_104806891	3300012929	Vadose Zone Soil	MRIRHLKRKVGAVIDSVWPPQWKFSMHPRGGDEILVGDEGVLESVKRMGERLFLTMRYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTIGDLDV*
Ga0126375_119782341	3300012948	Tropical Forest Soil	RGATMRLRQLKRKFGAVIESTWPPRWTFSMHPRGEVEILVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0126369_102323951	3300012971	Tropical Forest Soil	TWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKHKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDLYV*
Ga0126369_112286681	3300012971	Tropical Forest Soil	TWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKAIGDLYV*
Ga0134075_101535032	3300014154	Grasslands Soil	VIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKAIGDLDV*
Ga0137403_105666862	3300015264	Vadose Zone Soil	MRIRHLKRKVGAVIDSVWPPQWKFSMHPRGGDEILVGDEGVLESVKRIGERLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTIGDLDV*
Ga0134089_103578361	3300015358	Grasslands Soil	MRIRHLKRKVGGVIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTIGDLDV
Ga0182033_100139257	3300016319	Soil	MKIRHLKRKFGGVIDSVWPPRWTFSTHPRGGDEILVSEEGVLESVKRMGERLSLTVKYKGRQRFGSLQWDAPPSLDAVEQLLLA
Ga0182034_108039733	3300016371	Soil	MKIRQLKQKFGAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDVYV
Ga0182039_108460381	3300016422	Soil	MKIRQLKRKFGAVIESTWPPRWTSSMHPRGEIEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDLYV
Ga0184608_101008411	3300018028	Groundwater Sediment	MKIRRLKRKLGGVIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERALLANLGKPIKTIGDLDV
Ga0184634_101159132	3300018031	Groundwater Sediment	MKIRRLKRKLGGVIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTIGDLDV
Ga0184626_1000061523	3300018053	Groundwater Sediment	MKIRRLKRKLGGVIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDTPPSLDAVERVLLANLGKPIKTIGDLDV
Ga0184609_101910872	3300018076	Groundwater Sediment	MKIRRLKRKLRGVIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDTPPSLDAVERVLLANLGKPIKTIGDLDV
Ga0184633_100050316	3300018077	Groundwater Sediment	VIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTIGDLDV
Ga0184627_100401535	3300018079	Groundwater Sediment	MKIRRLKRKLGGVIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPITTIGDLDV
Ga0184639_100468533	3300018082	Groundwater Sediment	VWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTIGDLDV
Ga0066662_100419201	3300018468	Grasslands Soil	VIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKAIGDLDV
Ga0126371_101604933	3300021560	Tropical Forest Soil	MSDTTGMKPQGATMKIRQLKRKFGAVLESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDLYV
Ga0224452_11704501	3300022534	Groundwater Sediment	EPSMKIRRLKRKLGGVIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERALLANLGKPIKTIGDLDV
Ga0207684_100966771	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	GGGGIDSVWPPQWTFSMHPRGGDEILVGDEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTIGDLDV
Ga0207646_100326313	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRIRHLKRKVGAVIDSVWPPQWTFSMHPRGGDEILVGDEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTIGDLDV
Ga0207646_102399612	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKIRQLKRKFGAVIESTWPPGWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKCRGQERFGSLQWDAPPSLDAVERVLQANLGKPIKVIGDLHV
Ga0209236_10676064	3300026298	Grasslands Soil	MKIRHLKRKVGGVIDSVWPPRWTFSMHPRGGDEILVGEEGVLESVKRMNDRLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTVGDLDV
Ga0209761_10763872	3300026313	Grasslands Soil	VWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTIGDLDVSR
Ga0209376_12550961	3300026540	Soil	LKRKVGGVIDSVWPPRWTFSMHPRGGDEILVGEEGVLESVKRMNDRLSLTMKYKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTVGDLDV
Ga0209684_10793981	3300027527	Tropical Forest Soil	MKIRHLKRKFEAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDLYV
Ga0209180_1000811410	3300027846	Vadose Zone Soil	VWPPRWTFSIHPRGAGEILVGEEGVLESVKRMSERLALTMKYKGRERFGSLQWDTPPSLDAVERVLLANLGKPIKTIGDLDV
Ga0209465_100873232	3300027874	Tropical Forest Soil	MRLRQLKRKFGAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDLYV
Ga0307504_102596232	3300028792	Soil	MKIRRLKRKLGGGIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLALTMKYKGRERFGSLQWDTPPSLDAVERVLLANLGKPIKTIGDLDV
Ga0318516_102900132	3300031543	Soil	MKIRHLKRKFGGVIDSVWPPRWTFSTHPRGGDEILVSEEGVLESVKRMGERLSLTVKYKGRQRFGSLQWDAPPSLDAVEQLLLANLGKPIKTIGDLDVKPVA
Ga0318534_105229992	3300031544	Soil	MKIRQLKRKFGAVIESTWPPRWTSSMHPRGEIEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDVYV
Ga0318541_101287212	3300031545	Soil	MKIRQLKRKFGAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLSMKYKGQERFGSLQWDAPPSLDAVEKVLQANLRKPIKTIGDMYV
Ga0318541_102024541	3300031545	Soil	MKIRHLKRKFGGVIDSVWPPRWTFSTHPRGGDEILVSEEGVLESVKRMGERLSLTVKYKGRQRFGSLQWDAPPSLDAVEQLLLANLGKPIKTIGDVYV
Ga0318538_108125371	3300031546	Soil	MSDTTGMKPRGATMKIRQLKRKFGAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDVYV
Ga0318574_102714763	3300031680	Soil	MKIRHLKRKFGGVIDSVWPPRWTFSTHPRGGDEILVSEEGVLESVKRMGERLSLTVKYKGRQRFGSLQWDAPPSLDAVEQLLLANLGKPIKTIGD
Ga0318574_105726271	3300031680	Soil	TWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDVFV
Ga0318560_105047571	3300031682	Soil	MKIRQLKRKFGAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDVFV
Ga0318496_101489781	3300031713	Soil	MKIRQLKRKFGAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDVYV
Ga0318501_105333851	3300031736	Soil	MRIRQLKRKFGAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDVYV
Ga0306918_110630442	3300031744	Soil	MKIRQLKRKFEAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDVYV
Ga0318502_109307792	3300031747	Soil	MKIRQLKRKFEAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDVYV
Ga0318552_104923072	3300031782	Soil	MKIRQLKRKFGAVIESTWPPRWTSSMHSRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDVYV
Ga0318497_103930752	3300031805	Soil	MKIRQLKRKFGAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDVYV
Ga0307473_108228501	3300031820	Hardwood Forest Soil	MKIRHLKQKLGGVIDSVWPPQWMFSMHPRGGDEILVGDEGVLESVKRMGERLSLTMKHKGRERFGSLQWDAPPSLDAVERVLLANLGKPIKTIGDLDV
Ga0310917_109610911	3300031833	Soil	KIRQLKRKFGAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDVFV
Ga0310916_110184621	3300031942	Soil	MKIRQLKRKFGAVIESTWPPRWTSSMHSRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDVYV
Ga0306924_111061432	3300032076	Soil	MKIRQLKRKFGAVIESTWPPRWTSSMHSRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLGKPIKTIGDVFV
Ga0318518_105485251	3300032090	Soil	REGRARPVLYERDGGAEERSMKIRHLKRKFGGVIDSVWPPRWTFSTHPRGGDEILVSEEGVLESVKRMGERLSLTVKYKGRQRFGSLQWDAPPSLDAVEQLLLANLGKPIKTIGDLDVKPVA
Ga0318518_106036301	3300032090	Soil	AGMKPRGATMKIRQLKRKFGAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLEWDAPPSLDAVEKVLQANLGKPIKTIGDVFV
Ga0307471_10000922712	3300032180	Hardwood Forest Soil	MRIRRLKREVGGVIDSVWPPRWTFSMRPRGGDEILVGEEGVLESVKRMGERLSLTMSYKGRERFGSLQWDAPPSLDAVERVLQTNLGKPIKTIGDLDV
Ga0310914_111388192	3300033289	Soil	MKIRQLKRKFGAVIESTWPPRWTSSMHPRGEVEVLVGEEGTLESVKRIGEHLSLTMKYKGQERFGSLQWDAPPSLDAVEKVLQANLRKPIKTIGDMYV
Ga0364946_136411_140_436	3300033815	Sediment	MKIRRLKRKSGGVIDSVWPPRWTFSIHPRGGDEILVGEEGVLESVKRMGERLSLTMKYKGRERFGSLQWDTPPSLDAVERVLLANLGKPIKTIGDLDV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086743

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences