Metagenome / Metatranscriptome Family F086815

Basic Information
Family ID	F086815
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	104 residues
Representative Sequence	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTANVEKKPPIGQPRAVVWQNRVFTTDGQLRRYLHTKGLSYSRWVSRHPAAFAVLQAKPAKHGGAAVG
Number of Associated Samples	65
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	52.73 %
% of genes near scaffold ends (potentially truncated)	46.36 %
% of genes from short scaffolds (< 2000 bps)	90.00 %
Associated GOLD sequencing projects	50
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Most Common Taxonomy
Group	Unclassified (53.636 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (22.727 % of family members)
Environment Ontology (ENVO)	Unclassified (60.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (85.455 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.89% β-sheet: 4.44% Coil/Unstructured: 46.67%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00398	RrnaAD	6.36
PF07726	AAA_3	3.64

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	6.36

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
All Organisms	root	All Organisms	46.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
cellular organisms	root	All Organisms → cellular organisms	46.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	6.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	5.45 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.45 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.45 %
Blastococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.45 %
Blastococcus saxobsidens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → Blastococcus saxobsidens	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003324\|soilH2_10341450	Not Available	1313	Open in IMG/M
3300004479\|Ga0062595_100104886	All Organisms → cellular organisms → Bacteria	1515	Open in IMG/M
3300005327\|Ga0070658_10118666	All Organisms → cellular organisms → Bacteria	2197	Open in IMG/M
3300005327\|Ga0070658_10247558	All Organisms → cellular organisms → Bacteria	1512	Open in IMG/M
3300005327\|Ga0070658_10437417	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300005327\|Ga0070658_10886738	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300005329\|Ga0070683_100614071	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300005329\|Ga0070683_101130284	Not Available	752	Open in IMG/M
3300005336\|Ga0070680_101071147	Not Available	696	Open in IMG/M
3300005336\|Ga0070680_101582634	Not Available	568	Open in IMG/M
3300005336\|Ga0070680_101800070	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300005337\|Ga0070682_100437633	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300005337\|Ga0070682_100873271	Not Available	737	Open in IMG/M
3300005337\|Ga0070682_101267663	Not Available	625	Open in IMG/M
3300005339\|Ga0070660_100415505	Not Available	1113	Open in IMG/M
3300005339\|Ga0070660_100800395	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300005339\|Ga0070660_100841530	Not Available	772	Open in IMG/M
3300005339\|Ga0070660_101591574	Not Available	556	Open in IMG/M
3300005344\|Ga0070661_101011860	Not Available	690	Open in IMG/M
3300005439\|Ga0070711_101864784	Not Available	528	Open in IMG/M
3300005439\|Ga0070711_101968049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → Blastococcus saxobsidens	514	Open in IMG/M
3300005455\|Ga0070663_100846683	Not Available	787	Open in IMG/M
3300005455\|Ga0070663_101455907	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300005458\|Ga0070681_10211656	All Organisms → cellular organisms → Bacteria	1855	Open in IMG/M
3300005458\|Ga0070681_10876898	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300005458\|Ga0070681_11492313	Not Available	600	Open in IMG/M
3300005530\|Ga0070679_100259613	Not Available	1693	Open in IMG/M
3300005530\|Ga0070679_101031970	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300005539\|Ga0068853_100175703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1940	Open in IMG/M
3300005539\|Ga0068853_100729188	Not Available	946	Open in IMG/M
3300005546\|Ga0070696_101710388	Not Available	542	Open in IMG/M
3300005563\|Ga0068855_100300254	All Organisms → cellular organisms → Bacteria	1778	Open in IMG/M
3300005563\|Ga0068855_101054967	Not Available	851	Open in IMG/M
3300005563\|Ga0068855_101516221	Not Available	688	Open in IMG/M
3300005564\|Ga0070664_101459608	Not Available	647	Open in IMG/M
3300005578\|Ga0068854_101500493	Not Available	612	Open in IMG/M
3300005614\|Ga0068856_101180156	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300005614\|Ga0068856_101807721	Not Available	623	Open in IMG/M
3300006804\|Ga0079221_11318783	Not Available	569	Open in IMG/M
3300006954\|Ga0079219_12044962	Not Available	546	Open in IMG/M
3300009093\|Ga0105240_11214173	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300009174\|Ga0105241_11330784	Not Available	685	Open in IMG/M
3300009174\|Ga0105241_12381522	Not Available	528	Open in IMG/M
3300009545\|Ga0105237_11497626	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300009551\|Ga0105238_10083134	All Organisms → cellular organisms → Bacteria	3191	Open in IMG/M
3300009551\|Ga0105238_10121934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2586	Open in IMG/M
3300009551\|Ga0105238_12309964	Not Available	573	Open in IMG/M
3300010371\|Ga0134125_11426330	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300010373\|Ga0134128_10306643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1777	Open in IMG/M
3300010375\|Ga0105239_11131801	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300010399\|Ga0134127_11223638	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300010399\|Ga0134127_12321593	Not Available	616	Open in IMG/M
3300012011\|Ga0120152_1028258	All Organisms → cellular organisms → Bacteria	2014	Open in IMG/M
3300012014\|Ga0120159_1028795	All Organisms → cellular organisms → Bacteria	1940	Open in IMG/M
3300012469\|Ga0150984_118474128	Not Available	662	Open in IMG/M
3300012469\|Ga0150984_120188131	Not Available	645	Open in IMG/M
3300013100\|Ga0157373_10303252	Not Available	1134	Open in IMG/M
3300013102\|Ga0157371_11655928	Not Available	502	Open in IMG/M
3300013104\|Ga0157370_10094554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2804	Open in IMG/M
3300013104\|Ga0157370_10132812	All Organisms → cellular organisms → Bacteria	2322	Open in IMG/M
3300013105\|Ga0157369_10263243	Not Available	1798	Open in IMG/M
3300013105\|Ga0157369_10581708	Not Available	1156	Open in IMG/M
3300013296\|Ga0157374_11480080	Not Available	702	Open in IMG/M
3300013307\|Ga0157372_10185607	All Organisms → cellular organisms → Bacteria	2408	Open in IMG/M
3300013307\|Ga0157372_11553331	Not Available	762	Open in IMG/M
3300014325\|Ga0163163_11282404	Not Available	795	Open in IMG/M
3300014497\|Ga0182008_10374063	Not Available	760	Open in IMG/M
3300014497\|Ga0182008_10763883	Not Available	558	Open in IMG/M
3300018468\|Ga0066662_10903085	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300020069\|Ga0197907_10523734	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300020069\|Ga0197907_11135968	Not Available	1113	Open in IMG/M
3300020070\|Ga0206356_11177939	Not Available	727	Open in IMG/M
3300020070\|Ga0206356_11385671	Not Available	550	Open in IMG/M
3300020070\|Ga0206356_11562676	Not Available	1180	Open in IMG/M
3300020076\|Ga0206355_1168115	Not Available	644	Open in IMG/M
3300020081\|Ga0206354_10629647	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300020082\|Ga0206353_10683156	All Organisms → cellular organisms → Bacteria	1747	Open in IMG/M
3300025909\|Ga0207705_10242816	Not Available	1372	Open in IMG/M
3300025909\|Ga0207705_10650456	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300025909\|Ga0207705_10846186	Not Available	709	Open in IMG/M
3300025909\|Ga0207705_10906648	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300025911\|Ga0207654_10404911	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300025912\|Ga0207707_10096008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2590	Open in IMG/M
3300025913\|Ga0207695_11015991	Not Available	709	Open in IMG/M
3300025914\|Ga0207671_10879165	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300025914\|Ga0207671_11370449	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300025917\|Ga0207660_11576339	Not Available	530	Open in IMG/M
3300025917\|Ga0207660_11656077	Not Available	515	Open in IMG/M
3300025919\|Ga0207657_10134256	All Organisms → cellular organisms → Bacteria	2026	Open in IMG/M
3300025919\|Ga0207657_10295288	All Organisms → cellular organisms → Bacteria	1284	Open in IMG/M
3300025919\|Ga0207657_10662639	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300025919\|Ga0207657_10997476	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300025919\|Ga0207657_11293315	Not Available	551	Open in IMG/M
3300025920\|Ga0207649_11535983	Not Available	527	Open in IMG/M
3300025921\|Ga0207652_10439915	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300025924\|Ga0207694_10760161	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300025929\|Ga0207664_10273767	All Organisms → cellular organisms → Bacteria	1479	Open in IMG/M
3300025932\|Ga0207690_10453911	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300025932\|Ga0207690_11061921	Not Available	674	Open in IMG/M
3300025944\|Ga0207661_10650013	Not Available	969	Open in IMG/M
3300025944\|Ga0207661_11258653	Not Available	680	Open in IMG/M
3300025945\|Ga0207679_11913575	Not Available	541	Open in IMG/M
3300025949\|Ga0207667_10748804	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300025949\|Ga0207667_11233966	Not Available	726	Open in IMG/M
3300026041\|Ga0207639_11590773	Not Available	613	Open in IMG/M
3300031231\|Ga0170824_118042292	Not Available	685	Open in IMG/M
3300031938\|Ga0308175_100052278	All Organisms → cellular organisms → Bacteria	3539	Open in IMG/M
3300031938\|Ga0308175_102865406	Not Available	538	Open in IMG/M
3300031939\|Ga0308174_10077353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2330	Open in IMG/M
3300031996\|Ga0308176_12365027	Not Available	567	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	57.27%
Environmental	Environmental	42.73%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	57.27%
Terrestrial	Environmental → Terrestrial	42.73%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	46.36%
Soil	Environmental → Terrestrial → Soil	42.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.00%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Soil	Host-Associated → Plants → Rhizosphere → Soil	24.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	21.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.82%
Loam	Environmental → Terrestrial → Soil → Loam	20.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.00%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	24.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	20.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.64%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.64%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	22.73%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	17.27%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	11.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	10.00%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	7.27%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	7.27%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.82%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012014	Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020076	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v3)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
soilH2_103414501	3300003324	Sugarcane Root And Bulk Soil	MSLALARGFRIAITRFVTITATLVLVAALVLVWARVVSTLTKNIEPKPPIGQPRAVVWQNRVFTTEGQLRRYLNAKGLSYSRWVSRHPAAFALLQSKPAKASGAVG*
Ga0062595_1001048862	3300004479	Soil	MSVALAHGLRVAFSRFVTITMVVFLVGALVVVWAKAISTLTANVQPKPPIGQPRAVVWQNRVFMTEGQLRRYFNAKGLSYARWVSRHPAAFAVLQAKPAKRTGAVG*
Ga0070658_101186663	3300005327	Corn Rhizosphere	MSVALARGLRVAFSRFVTIMMTIVLLGALVVVWAKVVGTLTAKIDPKPPIGQPSAVVWQDRVFTTEGQIRHYLQAKGLSYSRWVSRHPAAFAVLQAKPAKGSGAVG*
Ga0070658_102475582	3300005327	Corn Rhizosphere	MSVALAHGLRVAFNRFVTITMTLVLLGALVLVWAKVVSTLTANVEKKPPIGQPQAVVWQKRVFTTDGQLRRYLHAKGVSYSRWVSRHPAAFAVLQAKPAKRGGAAAG*
Ga0070658_104374172	3300005327	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPRAVVWQNRVFTTEGQLRHYLNAKHVSYSRWVSRHPAAFAVLQAKPAKG
Ga0070658_108867382	3300005327	Corn Rhizosphere	MSVALAHGLRVAFSRFVTLVMTILLLGALVLVWAKVVGTLTANVERNPPIGQPRAVVWQSRVFTTEGQLRRYLHAKGLSYARWVSRHPAAFAVLQAKPAKHGGAAVG*
Ga0070683_1006140711	3300005329	Corn Rhizosphere	MSVALAHGLRVAFSRFVTLVMTILLLGALVLVWAKVVGTLTANVERNPPIGQPRAVVWQSRVFTTEGQLRRYLHAKGLSYARWVSRHPAAFAVLQAKPAKHGGA
Ga0070683_1011302842	3300005329	Corn Rhizosphere	SRFVTITMTLVLVGALVLVWAKVVGTLTAHIDPKPPIGQPQAVVWQSRVFTTDTQLRRFLAAKGLSYSRWVARHPAAFAVLQAKPAKHPGAGG*
Ga0070680_1010711472	3300005336	Corn Rhizosphere	FGSCSSWQSCETEQMSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPRAVVWQNRVFTTESQLRHYLNAKHISYSRWVSRHPAAFAVLQAKPAKGAGAVG
Ga0070680_1015826341	3300005336	Corn Rhizosphere	GSCGSWQSCETEDMSVALAHGLRVAFNRFVTIVMTLVLLGALILVWAKVVSTLTANVEKKPPIGQPSAVVWQNRVFTTDGQLRRYLHAKGLSYTRWVSRHPAAFAVLQAKPAKKRSGASVG*
Ga0070680_1018000702	3300005336	Corn Rhizosphere	MSVALAHGLRVAFSRFVTITMTLVLLGALVLVWAKVVSTLTANVEKKPPIGQPRAVVWQNRVFTTDGQLRRYLRAKGLSYSRWVSR
Ga0070682_1004376332	3300005337	Corn Rhizosphere	MSVAFAHGLRVAFSRFVTITMTLVLLGSLVLVWAKVVGTLTAHIDPKPPIGQPQAVVWQSRVFTTDTQLRRFLAAKGLSYSRWVARHPAAFAVLQAKPAKHPGAGG*
Ga0070682_1008732711	3300005337	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTANVEKKPPIGQPRAVVWQNRVFTTDGQLRRYLHTKGLSYSRWVSRHPAAFAVLQAKPAKHGASAVG*
Ga0070682_1012676631	3300005337	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTANVEKKPPIGQPSAVVWQNRVFTTGGQLRRYLHAKGLSYTRWVSRHPAAFAVLQAKPAKRGGAAAG*
Ga0070660_1004155052	3300005339	Corn Rhizosphere	MSVALAHGLRVAFSRFVTIVMTLVLLGALVLVWAKVVSTLTAHVEPKPAIGQPRAVVWQSRVFTTEGQLRRFLHAKGLSYTRWVSRHPAAFAVLQAKPAKGAGAIR*
Ga0070660_1008003951	3300005339	Corn Rhizosphere	MSVAVAHGLRVAFHRFVTIVMTIVLVGALVLVWAKVVSTLTAKVEKKPPIGQPRAVVWQNRVFTTEGQLRSYLHAKGISYSRWVSRHPAAFALLQSKPAKSSGAIG*
Ga0070660_1008415302	3300005339	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTVVLLGALVLVWAKVVGTLTANVEKKPPIGQPNAVVWQNRVFTTDGQLRRYLHAKGLSYTRWVSRHPAAFAVLQAKPAKHGGAAVG*
Ga0070660_1015915742	3300005339	Corn Rhizosphere	MSVALSRGLRVAFSRFVTITMTIVLLGALVLVWAKVVGTLTAKIDPKPPIGQPRAVVWQDRVFTTEGQLRHYLQAKGLSYSRWVSRHPAAFAVLQAKPAKGAGAIG*
Ga0070661_1010118602	3300005344	Corn Rhizosphere	QSCETEQMSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPRAVVWQNRVFTTEGQLRHYLNAKHVSYSRWVSRHPAAFAVLQAKPAKGAGAVG*
Ga0070711_1018647841	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPRAVVWQNRVFTTESQLRHYLNAKHISYSRWVSRHPAAFAVLQAKPAKGAGAVG*
Ga0070711_1019680491	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSVAFAHGLRVAFSRFLTITMTLVLLGALVLVWAKAISTLTAHIDPKPPIGQPQGVVWQSRVFTTEAQLRRYLNAKGLSYSRWAARHPAAFAVLQAKPAKHHGAVG*
Ga0070663_1008466832	3300005455	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVGTLTANVEKKPPIGQPNAVVWQNRVFTTDGQLRRYLHAKGLSYTRWVSRHPAAFAVLQAKPAKHGGAAVG*
Ga0070663_1014559072	3300005455	Corn Rhizosphere	MSVALAHGLRVAFNRFVTITMTLVLLGALVLVWAKVVSTLTANVEKKPPIGQPQAVVWQKRVFTTDGQLRRYLHAKGVSYSRWVSRHPAAFAVLQAKPAKRGGAA
Ga0070681_102116562	3300005458	Corn Rhizosphere	MSVAVAHGLRVAFHRFVTIVMTIVLLGALVLVWAKVVSTLTAKVEKKPPIGQPRAVVWQNRVFTTEGQLRSYLHARGISYSRWVSRHPAAFALLQSKPAKSSGAIG*
Ga0070681_108768981	3300005458	Corn Rhizosphere	MSVALAHGLRVAFSRFVTIVMTLVLLGALVLVWAKVVSTLTAHVEPKAPIGQPRAVVWQSRVFTTEGQLQRYLHAKGLSYTRWVSRHPAAFAVLQAKPAKGAGAIR*
Ga0070681_114923132	3300005458	Corn Rhizosphere	HGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTANVEKKPPIGQPSAVVWQNRVFTTGGQLRRYLHAKGLSYTRWVSRHPAAFAVLQAKPAKHGGAAVG*
Ga0070679_1002596134	3300005530	Corn Rhizosphere	MSVAVAHGLRVAFHRFVTIVMTIVLLGALVLVWAKVVSTLTAKVEKKPPIGQPRAVVWQNRVFTTEGQLRSYLHAKGISYSRWVSRHPAAFALLQSKPAKSSGAIG*
Ga0070679_1010319702	3300005530	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPSAVVWQNRVFTTDGQLQRYLRARGLSYSRWVSRHPAAFAVLQAKPAKHGASAVG*
Ga0068853_1001757031	3300005539	Corn Rhizosphere	HGLRVAFNRFVTIVMTVVLLGALVLVWAKVVGTLTANVEKKPPIGQPNAVVWQNRVFTTDGQLRRYLHAKGLSYTRWVSRHPAAFAVLQAKPAKHGGAAVG*
Ga0068853_1007291882	3300005539	Corn Rhizosphere	DPGSCRSWQSCETEWMSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTANVTPKPAIGQPRAVVWQTRVFTTEGQLRRYLHAKGLSYTRWVSRHPAAFAVLQAKPAKGAGAIR*
Ga0070696_1017103882	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSVALAHGLRVAFSRFVTIVMTLVLLGALVLVWAKVVSTLTAHVEPKPAIGQPRAVVWQSRVFTTEGQLRRFLHAKGLSYTRWVSRHPAAFAVLQAKPAKGA
Ga0068855_1003002542	3300005563	Corn Rhizosphere	MSVALSRGLRVAFSRFVTITMTIVLLGALVLVWAKVVGTLTAKIDPKPPIGQPRAVVWQDRVFTTEGQLRHYLQAKGLSYSRWVSRHPAAFAVLQAK
Ga0068855_1010549672	3300005563	Corn Rhizosphere	MSVAVAHGLRVALNRFVTIMMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPRAVVWQNRVFTTEGQLRHYLNAKHVSYSRWVSRHPAAFAVLQAKPAKGAGAVG*
Ga0068855_1015162212	3300005563	Corn Rhizosphere	MSVALAHGLRVAFNRFVTITMTLVLLGALVLVWAKVVSTLTANVEKKPPIGQPQAVVWQKRVFTTDGQLRRYLHAKGVSYSRWVSRHPAAFAVLQAKPAKRGGAAVG*
Ga0070664_1014596081	3300005564	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPRAVVWQNRVFTTQGQLRHYLNAKHVSYSRWVSRHPAAFAVLQAKPAKGAGAVG*
Ga0068854_1015004932	3300005578	Corn Rhizosphere	SSQSCETKDMSVAVAHGLRVALNRFVTIMMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPRAVVWQNRVFTTEGQLRHYLNAKHVSYSRWVSRHPAAFAVLQAKPAKGAGAVG*
Ga0068856_1011801562	3300005614	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPRAVVWQNRVFTTEGQLRHYLNAKHVSYSRWVSRHPAAFAVLQAKPAKGAGAVG*
Ga0068856_1018077212	3300005614	Corn Rhizosphere	MSVALAHGLRVAFSRFVSVLMAVVLLGALVIVWARVVSTLTANVEKKPPIGQPRAVVWQNRVFTTEAQIRRYLQAKGLSYSRWVSRHPAAFALLQSKPAKSSGAVG*
Ga0079221_113187831	3300006804	Agricultural Soil	HGLRVAVSRFVTITMAIVLVGALVLVWAKVISTLTAHVEPKPPIGQPRAVVWQHRVFTTEGQVKRYLDAKGLSYTRWASRHPAAFAVLQAKPAKGTGAIG*
Ga0079219_120449621	3300006954	Agricultural Soil	TFGSCRTAQSCKTEAMSVALAHGLRVALSRFITIVMTLVLLGALVLVWAKVISTLTAHIEPKPPIGQPRAVVWQGRVFTTEGQIRRYLHAKGLSYARWVSRHPAAFAVLQAKPAKSTGAIG*
Ga0105240_112141732	3300009093	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTANVDKKPPIGQPSAVVWQNRVFTTDGQLRRYLHTKGLSYSRWVSRHPAAFAVLQAKPAKHGASAVG*
Ga0105241_113307842	3300009174	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPRAVVWQNRVFTTESQLRHYLNAKHISYSRWVSRHPAAFAVLQAKPAKGAGAIG*
Ga0105241_123815221	3300009174	Corn Rhizosphere	MSVAFAHGLRVAFSRFVTITMTLVLLGSLVLVWAKVVGTLTAHIDPKPPIGQPQAVVWQSRVFTTDTQLRRFLTAKGLSYSRWVARHPAAFAVLQAKPAKHPGAGG*
Ga0105237_114976262	3300009545	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTVVLLGALVLVWAKVVGTLTANVEKKPPIGQPNAVVWQNRVFTTDGQLRRYLHAKGLSYTRWVSRHPAAFAVLQAKPAKH
Ga0105238_100831344	3300009551	Corn Rhizosphere	MSVALARGLRVAFSRFVTITMTIVLLGALVLVWAKVVGTLTAKIDPKPPIGQPRAVVWQDRVFTTEGQLRHYLQAKGLSYSRWVSRHPAAFAVLQAKPAKGAGAVG*
Ga0105238_101219342	3300009551	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTLVLLRALVVVWAKVVGTLTANVEKKPPIGQPNAVVWQNRVFTTDGQLRRYLHAKGLSYTRWVSRHPAAFAVLQAKPAKHGGAAVG*
Ga0105238_123099642	3300009551	Corn Rhizosphere	MSVALAHGLRVAFSRFVTLVMTILLLGALVLVWAKVVGTLTANVERNPPIGQPRAVVWQSRVFTTEGQLRRYLHAKGLSYARWVSRHPAAFAVLQAKPAKHGG
Ga0134125_114263302	3300010371	Terrestrial Soil	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTANVDKKPPIGQPSGVVWQNRVFTTDGQLRRYLHAKGLSYTRWVSRHPAAFAVLQAKPAKKRSGASVG*
Ga0134128_103066431	3300010373	Terrestrial Soil	QSCETKDMSVAVAHGLRVALNRFVTIMMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPRAVVWQNRVFTTESQLRHYLNAKHVSYSRWVSRHPAAFAVLQAKPAKGAGAVG*
Ga0105239_111318012	3300010375	Corn Rhizosphere	MSVALAHGLRVAFSRFVTLVMTILLLGALVLVWAKVVGTLTANVERNPPIGQPRAVVWQSRVFTTEGQLRRYLHAKGLSYARWVSRHPAAFAVLQAKPA
Ga0134127_112236382	3300010399	Terrestrial Soil	MSVALAHGLRVAFSRFVTLVMTILLLGALVLVWAKVVGTLTANVERNPPIGQPRAVVWQSRVFTTDTQLRRFLAAKGLSYSRWVARHPAAFAVLQAKPAKHPGAGG*
Ga0134127_123215932	3300010399	Terrestrial Soil	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTANVEKKPPIGQPRAVVWQNRVFTTDGQLRRYLHTKGLSYSRWVSRHPAAFAVLQAKPAKHGGAAVG*
Ga0120152_10282584	3300012011	Permafrost	MAVARLVTLLMALVLVAALAVVWVKVVSTLTSNIEPRPPIGQPSAVVWQNRVFTTDGQLRRYFHAKGLSYSRWVSRHPAAFAVLQAKPAKHSGAIG*
Ga0120159_10287952	3300012014	Permafrost	MAVARLVTLLMALVLVAALAVVWVKVVSTLTSNIEPRPPIGQPRAVVWNNRVFTTDGQLRRYLHAKGLSYSRWVSRHPAAFAVLQAKPAKHSGAIG*
Ga0150984_1184741282	3300012469	Avena Fatua Rhizosphere	FSRFVTLVMTILLLGALVLVWAKVVGTLTANVERNPPIGQPRAVVWQSRVFTTDTQLRRYLNARGLSYSRWAARHPSAFAVLQAKPAKHHGAVG*
Ga0150984_1201881311	3300012469	Avena Fatua Rhizosphere	LAHGLRVAFSRFVTITMTLVLLGALVLVWAKVVSTLTASIEPKPPIGQPQAVVWQNRVFTTEGQLKRYLHAKGISYSRWVSRHPAAFAVLQAKPAKHSGAAVG*
Ga0157373_103032522	3300013100	Corn Rhizosphere	MSVAVAQGLRVAFHRFVTIVMTIVLLGALVLVWAKVVSTLTAKVEKKPPIGQPLAVVWQNRVVTTEGQLRSYLHAKGISYSRWVSRHPAAFALLQSKPAKSSGAIG*
Ga0157371_116559281	3300013102	Corn Rhizosphere	GLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTANVAKKPPLGQPSAVVWQNRVFTTGGQLRRYLHAKGLSYTRWVSRHPAAFAVLQAKPAKKRSGASVG*
Ga0157370_100945545	3300013104	Corn Rhizosphere	MSVAFAHGLRVALSRFVTITMTLVLLGTLVLVWAKVVSTLTENVEKKPPIGQPRAVVWQSRVFTTDTQLRRFLAAKGLSYSRWVARHPAAFAVLQAKPAKHSGAGG*
Ga0157370_101328123	3300013104	Corn Rhizosphere	MSVALAHGLRVAFNRFVTITMTLVLLGALVLVWAKVVSTLTANVEKKPPIGQPQAVVWQKRVFTTDGQLRRYLHAKGVSYSRWVSRHPAAFA
Ga0157369_102632431	3300013105	Corn Rhizosphere	MSVALAHGLRVALNRFVTIVMTLVLLGALVLVWAKVVGTLTANVEKKPPIGQPNAVVWQNRVFTTDGQLRRYLHAKGLSYTRWVSRHPAAFAVLQAKPAKHGGAAVG*
Ga0157369_105817084	3300013105	Corn Rhizosphere	MTLVLVGALVLVWAKVVGTLTAHIDPKPPIGQPQAVVWQSRVFTTDTQLRRFLAAKGLSYSRWVARHPAAFAVLQAKPAKHPGAGG*
Ga0157374_114800801	3300013296	Miscanthus Rhizosphere	MSVAFAHGLRVAFSRFVTITMTLVLLGALVLVWAKVVGTLTAHIDPKPPIGQPQAVVWQSRVFTTDTQLRRFLTAKGLSYSRWVARHPAAFAVLQAKPAKHPGAGG*
Ga0157372_101856073	3300013307	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTVVLLGALVLVWAKVVGTLTANVEKKPPIGQPNAVVWQNRVFTTDGQLRRYLHAKGLSYTRWVSRHPAAFAVLQA
Ga0157372_115533311	3300013307	Corn Rhizosphere	SVALAHGLRVTFSRFVTIVMTLVLLAALVLVWAKVVSTLTAHVEPKPAIGQPRAVVWQSRVFTTEGQLRRFLHAKGLSYTRWVSRHPAAFAVLQAKPAKGAGAIR*
Ga0163163_112824042	3300014325	Switchgrass Rhizosphere	RGLRVAFSRFVTITMTIVLLGALVLVWAKVVGTLTAKIDPKPPIGQPSAVVWQDRVFTTEGQIRHYLQAKGLSYSRWVSRHPAAFAVLQAKPAKGSGAVG*
Ga0182008_103740632	3300014497	Rhizosphere	MSVAFAHGLRVAFSRFLTITMTLVLLAALVLVWAKAISMLTTHIDPKPPIGQPQGVVWQSRVFTTEAQLRRYLNAKGLSYSRWAARHPAAFAVLQAKPAKHHGAVG*
Ga0182008_107638832	3300014497	Rhizosphere	FNRFVTIVMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPRAVVWQNRVFTTESQLRHYLNAKHISYSRWVSRHPAAFAVLQAKPSKGAGAVG*
Ga0066662_109030852	3300018468	Grasslands Soil	MSLAFAHGLRVAVGRFVTITMTLVLLGALVLVWAKAISMLTAHVDPNPPIGQPQGVVWQSRVFTTDAQLRRYLNAKGLSYSRWAARH
Ga0197907_105237342	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MSVALAHGLRVAFSRFVTLVMTILLLGALVLVWAKVVGTLTANVERNPPIGQPRAVVWQSRVFTTEGQLRRYLHAKGLSYARWVSRHPAAFAVLQAKPAKHGGAAVG
Ga0197907_111359681	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPRAVVWQNRVFTTEGQLRHYLNAKHVSYSRWVSRHPAAFAVLQAKPAKGAGAVG
Ga0206356_111779392	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	SMSVAFAHGLRVAFSRFVTITMTLVLLGALVLVWAKVVGTLTAHIDPKPPIGQPQAVVWQSRVFTTDTQLRRFLAEKGLSYSRWVARPPAAFAVLQAKPAKHPGAGG
Ga0206356_113856712	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	VTIVMTVVLLGALVLVWAKVVSTLTANVEKKPLIGQPRAVVWQNRVFTTDGQLRRYLHTKGLSYSRWVSRHPAAFAVLQAKPAKHGASAVG
Ga0206356_115626761	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MSVALAHGLRVAFSRFVTLVMTILLLGALVLVWAKVVGTLTANVERNPPIGQPRAVVGQSRVFTTEGQLRRYLHAKGLSYARWVSRHPAAFAVLQAKPAKHGGAAVG
Ga0206355_11681151	3300020076	Corn, Switchgrass And Miscanthus Rhizosphere	HGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPRAVVWQNRVFTTEGQLRHYLNAKHVSYSRWVSRHPAAFAVLQAKPAKGAGAVG
Ga0206354_106296472	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MSVAFAHGLRVAFSRFVTITMTLVLLGSLVLVWAKVVGTLTAHIDPKPPIGQPQAVVWQSRVFTTDTQLRRFLTAKGLSYSRWVARHPA
Ga0206353_106831562	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MSVAFAHGLRVAFSRFVTITMTLVLLGSLVLVWAKVVGTLTAHIDPKPPIGQPQAVVWQSRVFTTDTQLRRFLAAKGLSYSRWVARHPAAFAVLQAKPAKHPGAGG
Ga0207705_102428164	3300025909	Corn Rhizosphere	LRVAFSRFVTLVMTILLLGALVLVWAKVVGTLTANVERNPPIGQPRAVVWQSRVFTTEGQLRRYLHAKGLSYARWVSRHPAAFAVLQAKPAKHGGAAVG
Ga0207705_106504562	3300025909	Corn Rhizosphere	MSVALAHGLRVAFNRFVTITMTLVLLGALVLVWAKVVSTLTANVEKKPPIGQPQAVVWQNRVFTTDGQLRRYLHAKGVLYSSWVSRHPAA
Ga0207705_108461861	3300025909	Corn Rhizosphere	MSVALARGLRVAFSRFVTIMMTIVLLGALVVVWAKVVGTLTAKIDPKPPIGQPSAVVWQDRVFTTEGQIRHYLQAKGLSYSRWVSRHPAAFAVLQAKPAKGSGAVG
Ga0207705_109066481	3300025909	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTANVEKKPPIGQPRAVVWQNRVFTTDGQLRRYLHTKGLSYSRWVSRHPAAFAVLQAKPAKHGASAVG
Ga0207654_104049111	3300025911	Corn Rhizosphere	MSVAFAHGLRVAFSRFVTITMTLVLLGSLVLVWAKVVGTLTAHIDPKPPIGQPQAVVWQSRVFTTDTQLRRFLTAKGLSYSRWVARHPAAFAVLQAKPAKHPGAAG
Ga0207707_100960082	3300025912	Corn Rhizosphere	MSVALAHGLRVAFSRFVTIVMTLVLLGALVLVWAKVVSTLTADVEPKAPIGQPRAVVWQSRVFTTEGQLQRYLHAKGLSYTRWVSRHPAAFAVLQAKPAKGAGAIR
Ga0207695_110159911	3300025913	Corn Rhizosphere	CETEDMSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPRAVVWQNRVFTTEGQLRHYLNAKHVSYSRWVSRHPAAFAVLQAKPAKGAGAVG
Ga0207671_108791651	3300025914	Corn Rhizosphere	MSVAFAHGLRVAFSRFVTITMTLVLLGSLVLVWAKVVGTLTAHIDPKPPIGQPQAVVWQSRVFTTDTQLRRFLAAKGLSYSRWVARHPAAFAVLQAKPAKHPG
Ga0207671_113704491	3300025914	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVGTLTANVEKKPPIGQPNAVVWQNRVFTTDGQLRRYLHAKGLSYTRWVSRHPAAFAVLQA
Ga0207660_115763391	3300025917	Corn Rhizosphere	MSVALAHGLRVAFSRFVTITMTLVLLGALVLVWAKVVSTLTANVEKKPPIGQPRAVVWQNRVFTTDGQLRRYLRAKGLSYSRWVSRHP
Ga0207660_116560771	3300025917	Corn Rhizosphere	MSVALAHGLRVAFSRFVTLVMTILLLGALVLVWAKVVGTLTANVERNPPIGQPRAVVWQSRVFTTEGQLRRYLHAKGLSYARWVSRHPAAFAVLQAKPAKHPGAGG
Ga0207657_101342562	3300025919	Corn Rhizosphere	MSVALAHGLRVAFSRFVTIVMTLVLLGALVLVWAKVVSTLTAHVEPKPAIGQPRAVVWQSRVFTTEGQLRRFLHAKGLSYTRWVSRHPAAFAVLQAKPAKGAGAIR
Ga0207657_102952882	3300025919	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTVVLLGALVLVWAKVVGTLTANVEKKPPIGQPNAVVWQNRVFTTDGQLRRYLHAKGLSYTRWVSRHPAAFAVLQAKPAKHGGAAVG
Ga0207657_106626391	3300025919	Corn Rhizosphere	MSVAVAHGLRVAFHRFVTIVMTIVLVGALVLVWAKVVSTLTAKVEKKPPIGQPRAVVWQNRVFTTEGQLRSYLHAKGISYSRWVSRHPAAFALLQSKPAKSSGAIG
Ga0207657_109974762	3300025919	Corn Rhizosphere	MSVALSRGLRVAFSRFVTITMTIVLLGALVLVWAKVVGTLTAKIDPKPPIGQPRAVVWQDRVFTTEGQLRHYLQAKGLSYSRWVSRHPAAFAVLQAKPAKGAGAIG
Ga0207657_112933151	3300025919	Corn Rhizosphere	MSVAFAHGLRVAFSRFVTITMTLVLLGSLVLVWAKVVGTLTAHIDPKPPIGQPQAVVWQSRVFTTDTQLRRFLTAKGLSYSRWVARHPAAFAVLQAKPAKHPGAGG
Ga0207649_115359831	3300025920	Corn Rhizosphere	MSVALAHGLRVAFNRFVTITMTLVLLGALVLVWAKVVSTLTANVEKKPPIGQPQAVVWQKRVFTTDGQLRRYLHAKGVSYSRWVSRHPAAFAVLQAKPAKRGGAAAG
Ga0207652_104399152	3300025921	Corn Rhizosphere	MSVAVAHGLRVAFHRFVTIVMTIVLLGALVLVWAKVVSTLTAKVEKKPPIGQPRAVVWQNRVFTTEGQLRSYLHAKGISYSRWVSRHPAAFALLQSKPAKSSGAIG
Ga0207694_107601611	3300025924	Corn Rhizosphere	MSVALAHGLRVAFSRFVTLVMTILLLGALVLVWAKVVGTLTANVERNPPIGQPRAVVWQSRVFTTEGQLRRYLHAKGLSYARWVSR
Ga0207664_102737672	3300025929	Agricultural Soil	MSVAFAHGLRVAFSRFLTITMTLVLLGALVLVWAKVIGTLTSHIDPKPPIGQPQGVVWQSRVFTTEAQLRRYLNAKGLSYSRWAARHPAAFAVLQAKPAKHHGAVG
Ga0207690_104539112	3300025932	Corn Rhizosphere	MSVALAHGLRVAFNRFVTITMTLVLLGALVLVWAKVVSTLTANVEKKPPIGQPQAVVWQKRVFTTDGQLRRYLHAKGVSYSRWVSRHPAAFAVLQAKPAKRGGAAVG
Ga0207690_110619212	3300025932	Corn Rhizosphere	MSVALSRGLRVAFSRFVTITMTIVLLGALVLVWAKVVGTLTAKIDRKPPIGQPSAVVWQDRVFTTEGQIRHYLQAKGLSYSRWVSRHPAAFAVLQAKPAKGSGAVG
Ga0207661_106500131	3300025944	Corn Rhizosphere	LAHGLRVAFSRFVTLVMTILLLGALVLVWAKVVGTLTANVERNPPIGQPRAVVWQSRVFTTEGQLRRYLHAKGLSYARWVSRHPAAFAVLQAKPAKHGGAAVG
Ga0207661_112586532	3300025944	Corn Rhizosphere	MSVAVAHGLRVAFHRFVTIVMTIVLLGALVLVWAKVVGTLTANVEKKPPIGQPRAVVWQNRVFTTDGQLRRYLHTKGLSYSRWVSRHPAAFAVLQAKPAKHGASAVG
Ga0207679_119135752	3300025945	Corn Rhizosphere	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPRAVVWQNRVFTTQGQLRHYLNAKHVSYSRWVSRHPAAFAVLQAKPAKGAGAVG
Ga0207667_107488042	3300025949	Corn Rhizosphere	MSVALAHGLRVAFSRFVTLVMTILLLGALVLVWAKVVGTLTANVERNPPIGQPRAVVWQSRVFTTEGQLRRYLHAKGLSYARWVSRHPAAFA
Ga0207667_112339662	3300025949	Corn Rhizosphere	MSVAFAHGLRVAFSRFVTITMTLVLLGSLVLVWAKVVGTLTAHIDPKPPIGQPQAVVWQSRVFTTDTQLRRFLAEKGLSYSRWVARHPAAFAVLQAKPAKHPGAGG
Ga0207639_115907732	3300026041	Corn Rhizosphere	ESMSVAFAHGLRVAFSRFVTITMTLVLLGSLVLVWAKVVGTLTAHIDPKPPIGQPQAVVWQSRVFTTDTQLRRFLAAKGLSYSRWVARHPAAFAVLQAKPAKHPGAGG
Ga0170824_1180422922	3300031231	Forest Soil	AFSRFVTITMVLVLLAALVLVWAKAISTLTSHIDPKPPIGQPQGVVWQSRVFTTDAQLRRYLNAKGLSYSRWAARHPAAFAVLQEKPPKHAGAVG
Ga0308175_1000522784	3300031938	Soil	MSVALAHGLRVAFNRFVTIVMTLVLLGALVLVWGKVVSTLTAQVEKKPPIGQPRGVVWQNRVFTTEGQLRRYLQAKGLSYSRWVSRHPAAFALLQSKPAKSSGAVG
Ga0308175_1028654061	3300031938	Soil	MSVALAHGLRVALHRFVTIVMTIVLLGALVLVWAKVVSTLTAKVDKKAPIGQPRAVVWQNRVFTTEGQLRNYLHARGISYSRWVSRHPAAFALLQS
Ga0308174_100773531	3300031939	Soil	DMSVALAHGLRVALNRFVTIVMTLVLLGALVLVWAKVVSTLTASIEKKPPIGQPRAVVWQNRVFTTESQLRHYLNAKHISYSRWVSRHPAAFAVLQAKPAKGAGAVG
Ga0308176_123650271	3300031996	Soil	MSVAVAHGLRIAFNRFVTILMTLVLLGALVLVWAKVVSTLTAKVEKKPPIGQPHGVVWQNRVFTTDGQLHRYLHAKGLSYSRWVSRHPAAFALLQSKPAKSSGAIG

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086815

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign