Metagenome / Metatranscriptome Family F086819

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086819
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	82 residues
Representative Sequence	LSLIDESDDDAVVEECIQELDELVMALDRYPPAAVAVAIGTYLEGLLGALLDERQCTADEVRELLREIESGVLEPQGPAKE
Number of Associated Samples	40
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.64 %
% of genes near scaffold ends (potentially truncated)	18.18 %
% of genes from short scaffolds (< 2000 bps)	70.00 %
Associated GOLD sequencing projects	31
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (83.636 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil (29.091 % of family members)
Environment Ontology (ENVO)	Unclassified (38.182 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.05% β-sheet: 0.00% Coil/Unstructured: 44.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00436	SSB	20.91
PF01047	MarR	8.18
PF05101	VirB3	4.55
PF03135	CagE_TrbE_VirB	2.73
PF00589	Phage_integrase	2.73
PF10543	ORF6N	1.82
PF05977	MFS_3	1.82
PF04542	Sigma70_r2	1.82
PF04956	TrbC	1.82
PF12728	HTH_17	1.82
PF13560	HTH_31	1.82
PF11925	DUF3443	0.91
PF03524	CagX	0.91
PF12802	MarR_2	0.91
PF08281	Sigma70_r4_2	0.91
PF01569	PAP2	0.91
PF03432	Relaxase	0.91
PF12651	RHH_3	0.91
PF08483	Obsolete Pfam Family	0.91
PF12846	AAA_10	0.91
PF04773	FecR	0.91
PF00392	GntR	0.91
PF04245	NA37	0.91
PF05713	MobC	0.91
PF11455	MazE-like	0.91
PF04616	Glyco_hydro_43	0.91
PF08448	PAS_4	0.91
PF09720	Unstab_antitox	0.91
PF11663	Toxin_YhaV	0.91
PF07702	UTRA	0.91
PF04326	AlbA_2	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	20.91
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	20.91
COG3702	Type IV secretory pathway, VirB3 component	Intracellular trafficking, secretion, and vesicular transport [U]	4.55
COG3451	Type IV secretory pathway, VirB4 component	Intracellular trafficking, secretion, and vesicular transport [U]	2.73
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.82
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.82
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.82
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	1.82
COG3838	Type IV secretory pathway, VirB2 component (pilin)	Intracellular trafficking, secretion, and vesicular transport [U]	1.82
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.82
COG2865	Predicted transcriptional regulator, contains HTH domain	Transcription [K]	0.91
COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	Replication, recombination and repair [L]	0.91
COG3504	Type IV secretory pathway, VirB9 components	Intracellular trafficking, secretion, and vesicular transport [U]	0.91
COG3843	Type IV secretory pathway, VirD2 component (relaxase)	Intracellular trafficking, secretion, and vesicular transport [U]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.64 %
Unclassified	root	N/A	16.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.64 %
Unclassified	root	N/A	16.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.64 %
Unclassified	root	N/A	16.36 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	63.64 %
Unclassified	root	N/A	16.36 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	14.55 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	9.09 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	9.09 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	7.27 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	4.55 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	7.27 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	4.55 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2.73 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	7.27 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	4.55 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	2.73 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	7.27 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	3.64 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.91 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	16.36 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	7.27 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	3.64 %
Variovorax sp. URHB0020	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. URHB0020	0.91 %
Granulicella mallensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005336\|Ga0070680_100035941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	4001	Open in IMG/M
3300005336\|Ga0070680_101348751	Not Available	617	Open in IMG/M
3300005435\|Ga0070714_101427595	All Organisms → cellular organisms → Bacteria → Proteobacteria	676	Open in IMG/M
3300005458\|Ga0070681_10559795	All Organisms → cellular organisms → Bacteria → Proteobacteria	1057	Open in IMG/M
3300005529\|Ga0070741_10001012	All Organisms → cellular organisms → Bacteria → Proteobacteria	91627	Open in IMG/M
3300005529\|Ga0070741_10002894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	44380	Open in IMG/M
3300005529\|Ga0070741_10457174	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300005531\|Ga0070738_10029888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. URHB0020	3836	Open in IMG/M
3300005531\|Ga0070738_10120567	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300005531\|Ga0070738_10121349	All Organisms → cellular organisms → Bacteria	1339	Open in IMG/M
3300005531\|Ga0070738_10186678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	964	Open in IMG/M
3300005531\|Ga0070738_10319919	Not Available	642	Open in IMG/M
3300005534\|Ga0070735_10224430	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300005541\|Ga0070733_10065944	All Organisms → cellular organisms → Bacteria → Proteobacteria	2278	Open in IMG/M
3300005563\|Ga0068855_100675454	All Organisms → cellular organisms → Bacteria → Proteobacteria	1107	Open in IMG/M
3300005563\|Ga0068855_101813806	Not Available	620	Open in IMG/M
3300005607\|Ga0070740_10078970	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella mallensis	1546	Open in IMG/M
3300005607\|Ga0070740_10082900	All Organisms → cellular organisms → Bacteria	1496	Open in IMG/M
3300005616\|Ga0068852_102594416	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300006804\|Ga0079221_10261861	All Organisms → cellular organisms → Bacteria	990	Open in IMG/M
3300006804\|Ga0079221_10884992	All Organisms → cellular organisms → Bacteria → Proteobacteria	653	Open in IMG/M
3300009093\|Ga0105240_11243837	All Organisms → cellular organisms → Bacteria → Proteobacteria	787	Open in IMG/M
3300009093\|Ga0105240_11450777	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300009093\|Ga0105240_12133221	Not Available	581	Open in IMG/M
3300009093\|Ga0105240_12738492	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300010048\|Ga0126373_11414792	All Organisms → cellular organisms → Bacteria → Proteobacteria	761	Open in IMG/M
3300010371\|Ga0134125_10001405	All Organisms → cellular organisms → Bacteria → Proteobacteria	29550	Open in IMG/M
3300010371\|Ga0134125_10007313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	12459	Open in IMG/M
3300010371\|Ga0134125_10155319	All Organisms → cellular organisms → Bacteria → Proteobacteria	2549	Open in IMG/M
3300010371\|Ga0134125_10235733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2034	Open in IMG/M
3300010371\|Ga0134125_10296739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1795	Open in IMG/M
3300010371\|Ga0134125_11075921	Not Available	881	Open in IMG/M
3300010371\|Ga0134125_11108767	All Organisms → cellular organisms → Bacteria → Proteobacteria	866	Open in IMG/M
3300010371\|Ga0134125_11177092	All Organisms → cellular organisms → Bacteria → Proteobacteria	838	Open in IMG/M
3300010371\|Ga0134125_11471698	Not Available	742	Open in IMG/M
3300010371\|Ga0134125_11543602	All Organisms → cellular organisms → Bacteria → Proteobacteria	723	Open in IMG/M
3300010371\|Ga0134125_11884304	All Organisms → cellular organisms → Bacteria → Proteobacteria	650	Open in IMG/M
3300010373\|Ga0134128_10004742	All Organisms → cellular organisms → Bacteria	16577	Open in IMG/M
3300010373\|Ga0134128_10008903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	12067	Open in IMG/M
3300010373\|Ga0134128_10011307	All Organisms → cellular organisms → Bacteria	10676	Open in IMG/M
3300010373\|Ga0134128_10048707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4913	Open in IMG/M
3300010373\|Ga0134128_10286450	All Organisms → cellular organisms → Bacteria	1846	Open in IMG/M
3300010373\|Ga0134128_10345134	All Organisms → cellular organisms → Bacteria → Proteobacteria	1664	Open in IMG/M
3300010373\|Ga0134128_10702536	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300010373\|Ga0134128_11050791	Not Available	900	Open in IMG/M
3300010373\|Ga0134128_11513016	All Organisms → cellular organisms → Bacteria → Proteobacteria	739	Open in IMG/M
3300010387\|Ga0136821_1239824	Not Available	1547	Open in IMG/M
3300010396\|Ga0134126_10016434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	9368	Open in IMG/M
3300010396\|Ga0134126_10042757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5702	Open in IMG/M
3300010396\|Ga0134126_10201699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2379	Open in IMG/M
3300010396\|Ga0134126_10273304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1992	Open in IMG/M
3300010396\|Ga0134126_10575845	All Organisms → cellular organisms → Bacteria → Proteobacteria	1290	Open in IMG/M
3300010396\|Ga0134126_10952765	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300010396\|Ga0134126_11034834	Not Available	918	Open in IMG/M
3300010396\|Ga0134126_11390894	All Organisms → cellular organisms → Bacteria → Proteobacteria	776	Open in IMG/M
3300010396\|Ga0134126_11548165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	730	Open in IMG/M
3300010396\|Ga0134126_11675035	All Organisms → cellular organisms → Bacteria → Proteobacteria	699	Open in IMG/M
3300010396\|Ga0134126_12979360	All Organisms → cellular organisms → Bacteria → Proteobacteria	512	Open in IMG/M
3300010399\|Ga0134127_10720922	All Organisms → cellular organisms → Bacteria → Proteobacteria	1039	Open in IMG/M
3300013104\|Ga0157370_10317390	All Organisms → cellular organisms → Bacteria → Proteobacteria	1438	Open in IMG/M
3300013104\|Ga0157370_11273003	Not Available	663	Open in IMG/M
3300013307\|Ga0157372_13253704	All Organisms → cellular organisms → Bacteria → Proteobacteria	518	Open in IMG/M
3300017937\|Ga0187809_10001067	All Organisms → cellular organisms → Bacteria	13387	Open in IMG/M
3300017937\|Ga0187809_10006944	All Organisms → cellular organisms → Bacteria	4021	Open in IMG/M
3300017937\|Ga0187809_10011158	All Organisms → cellular organisms → Bacteria → Proteobacteria	2997	Open in IMG/M
3300018001\|Ga0187815_10195335	All Organisms → cellular organisms → Bacteria → Proteobacteria	857	Open in IMG/M
3300020070\|Ga0206356_11483610	Not Available	833	Open in IMG/M
3300025912\|Ga0207707_10899665	All Organisms → cellular organisms → Bacteria → Proteobacteria	732	Open in IMG/M
3300025913\|Ga0207695_10070406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	3576	Open in IMG/M
3300025917\|Ga0207660_11082288	Not Available	653	Open in IMG/M
3300025929\|Ga0207664_10557058	All Organisms → cellular organisms → Bacteria → Proteobacteria	1029	Open in IMG/M
3300025949\|Ga0207667_10989004	Not Available	829	Open in IMG/M
3300027706\|Ga0209581_1025515	All Organisms → cellular organisms → Bacteria → Proteobacteria	2852	Open in IMG/M
3300027706\|Ga0209581_1083598	All Organisms → cellular organisms → Bacteria → Acidobacteria	1127	Open in IMG/M
3300027725\|Ga0209178_1208741	All Organisms → cellular organisms → Bacteria → Proteobacteria	693	Open in IMG/M
3300027867\|Ga0209167_10043887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2183	Open in IMG/M
3300027965\|Ga0209062_1062541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1717	Open in IMG/M
3300027965\|Ga0209062_1087563	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
3300027965\|Ga0209062_1293948	Not Available	549	Open in IMG/M
3300031670\|Ga0307374_10046978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	4552	Open in IMG/M
3300031708\|Ga0310686_113026648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	879	Open in IMG/M
3300032770\|Ga0335085_11815745	Not Available	624	Open in IMG/M
3300032805\|Ga0335078_10082270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	4688	Open in IMG/M
3300032895\|Ga0335074_10007066	All Organisms → cellular organisms → Bacteria → Proteobacteria	15562	Open in IMG/M
3300032895\|Ga0335074_10153853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	2903	Open in IMG/M
3300032895\|Ga0335074_10266261	All Organisms → cellular organisms → Bacteria → Proteobacteria	1998	Open in IMG/M
3300032895\|Ga0335074_10307770	All Organisms → cellular organisms → Bacteria → Proteobacteria	1803	Open in IMG/M
3300032895\|Ga0335074_10309441	All Organisms → cellular organisms → Bacteria → Proteobacteria	1797	Open in IMG/M
3300032895\|Ga0335074_10378480	All Organisms → cellular organisms → Bacteria → Proteobacteria	1552	Open in IMG/M
3300032895\|Ga0335074_10473038	All Organisms → cellular organisms → Bacteria → Proteobacteria	1316	Open in IMG/M
3300032895\|Ga0335074_10481370	All Organisms → cellular organisms → Bacteria → Proteobacteria	1299	Open in IMG/M
3300032895\|Ga0335074_10961969	All Organisms → cellular organisms → Bacteria → Proteobacteria	761	Open in IMG/M
3300032895\|Ga0335074_11274088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	611	Open in IMG/M
3300032895\|Ga0335074_11474602	All Organisms → cellular organisms → Bacteria → Proteobacteria	544	Open in IMG/M
3300032896\|Ga0335075_10000285	All Organisms → cellular organisms → Bacteria	92963	Open in IMG/M
3300032896\|Ga0335075_10003472	All Organisms → cellular organisms → Bacteria → Proteobacteria	25005	Open in IMG/M
3300032896\|Ga0335075_10008386	All Organisms → cellular organisms → Bacteria	15831	Open in IMG/M
3300032896\|Ga0335075_10011312	All Organisms → cellular organisms → Bacteria	13493	Open in IMG/M
3300032896\|Ga0335075_10013315	All Organisms → cellular organisms → Bacteria	12391	Open in IMG/M
3300032896\|Ga0335075_10015032	All Organisms → cellular organisms → Bacteria	11603	Open in IMG/M
3300032896\|Ga0335075_10187436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2500	Open in IMG/M
3300032896\|Ga0335075_10495714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1251	Open in IMG/M
3300032896\|Ga0335075_10496875	All Organisms → cellular organisms → Bacteria → Proteobacteria	1249	Open in IMG/M
3300032896\|Ga0335075_10583984	Not Available	1111	Open in IMG/M
3300032896\|Ga0335075_10664147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1012	Open in IMG/M
3300032896\|Ga0335075_11288334	Not Available	626	Open in IMG/M
3300032896\|Ga0335075_11610198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	533	Open in IMG/M
3300032896\|Ga0335075_11619856	Not Available	531	Open in IMG/M
3300033134\|Ga0335073_10509096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	1372	Open in IMG/M
3300033486\|Ga0316624_12309215	All Organisms → cellular organisms → Bacteria → Proteobacteria	501	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.09%
Host-Associated	Host-Associated	10.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.55%
Plants	Host-Associated → Plants	10.91%
Aquatic	Environmental → Aquatic	4.55%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.27%
Freshwater	Environmental → Aquatic → Freshwater	4.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.64%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	26.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.27%
Loam	Environmental → Terrestrial → Soil → Loam	6.36%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.64%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.91%
Clay	Environmental → Terrestrial → Soil → Clay	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	48.18%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	26.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.36%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.73%
Mine Drainage	Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage	0.91%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	29.09%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	26.36%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	16.36%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.55%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.82%
Sediment	Environmental → Aquatic → Freshwater → Groundwater → Mine Drainage → Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005607	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010387	Acid mine drainage microbial communities from Malanjkhand copper mine, India - M8 k-mer 51	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027706	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027965	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070680_1000359411	3300005336	Corn Rhizosphere	MLKLTIQSRNEILMSLIDDSDDDTVFEECIEELDELVMSLDRFPPAAVAVAMGTYLKGLLGALLDDGRCTTDEVRTLL
Ga0070680_1013487511	3300005336	Corn Rhizosphere	MSLIDHSGDDAALEECIEELDELVMSLDRYPAVAVAVAIGTHLEGLLGALIDERQCTAEEVRELLREIESGALKYEASTER*
Ga0070714_1014275951	3300005435	Agricultural Soil	MSLIEHSADDTILEECIEELDELVMSLDRFPPTAVAVAMGTYLESLLGALLDERQCTAEDVRELLREIESGVLEENGSMER*
Ga0070681_105597953	3300005458	Corn Rhizosphere	MSLIDDSDDDTAIEECIEELDELVMSLDRFPPAAVAVAMGTYLEGLLGALLDDGRCTTDEVRTLLREIESGVIESGPTA
Ga0070741_1000101222	3300005529	Surface Soil	MSLLDQSGDDTVLEECIEELDELVMSLDRYPAAAVAVAMGAHLEGLLGALLDERRCTAEEVRELLHKIESGALDQEAALEDETSRER*
Ga0070741_100028945	3300005529	Surface Soil	MSPTNETNDDALVEECIEELDGLFMALDHYPPAAVAIAIATYLEGLLGALLDERQCTADEVRELLREIEAGVLQPPSSAEK*
Ga0070741_104571742	3300005529	Surface Soil	MSLIDESADDPMVEECIEELDELVMGLDRYPPTAVAIAMGTYLESLLGALLDERQCTADEAREFLREIESGVIASGVEDDAPPGSKG*
Ga0070738_100298882	3300005531	Surface Soil	MSLVEQSDDDALVEECIEELDELVMSLDRFPAAAVAIALSTYLEGLLGALLDERQCTAEEIRELLREIESGAIESVLPREDEAATKR*
Ga0070738_101205672	3300005531	Surface Soil	MEGSLAMFLTDDSGGDAMVEECIAELKEMIMSLERYPPAAVAVALSTYLEGLLGALLDERQCTAAEIRELLREIESGVIDAGPPRPG*
Ga0070738_101213492	3300005531	Surface Soil	MSLVEESDDDAVVEKCIEELEELVMSLDRYPPAAIAVAIGTYLEGLLGALLDERQCTADEVRELLREIESGVLQPQGPAKE*
Ga0070738_101866782	3300005531	Surface Soil	MPLLDESDDDAVVEECLEELDELVMSLDRFPPTAVAVAMSTYLEGLLGALLDEGQCTADEVRELLREIESGVLEAQTPGKR*
Ga0070738_103199192	3300005531	Surface Soil	MSVRAESDDDAVVEECIEELGELVMSLDRYPPAAVAVALSTCLEGLLGALLDEHQCTPAEVRELLREIESGVLTGQAAATK*
Ga0070735_102244302	3300005534	Surface Soil	MSLIDESDDDAVVEECIQALDELVISLDRYPPAAVAVAIGTYLEGLLGALLDEHQCTADEIRELLREIESGVLEEQKTPER*
Ga0070733_100659442	3300005541	Surface Soil	MSLIKEPDDDAIVEECIEELDELLMSLDRFPPTAVAVAIGTCLEGLLGALLDEGHCTAAEARELLREIESGVLEEEPPAR*
Ga0068855_1006754541	3300005563	Corn Rhizosphere	MSLIDDSDDDTAIEECIEELDELVMSLDRFPPAAVAVAMGTYLEGLLGALLDDGQCTTDEVRTLLREIESGVIESGPTAKEEQAPPEG*
Ga0068855_1018138062	3300005563	Corn Rhizosphere	MPLIEHSADDNILEECIEELDELVMSLDRFPPTAVAVAMGTYLESLLGALLDERQCTAEDVRELLREIESGVLEENASKER*
Ga0070740_100789703	3300005607	Surface Soil	AMFLTDDSGGDAMVEECIAELKEMIMSLERYPPAAVAVALSTYLEGLLGALLDERQCTAAEIRELLREIESGVIDAGPPRPG*
Ga0070740_100829003	3300005607	Surface Soil	MSLIEESDDDALVEECIEELEELVMTLDRYPPATVAVAIGTYLEGLLGALLDEHQCTAEEVHELLREIEAGVLQPQTSAPK*
Ga0068852_1025944162	3300005616	Corn Rhizosphere	MPLIEHSADDNILEECIEELDELVMSLDRFPPTAVAVAMGTYLESLLGALLDERQCTAE
Ga0079221_102618613	3300006804	Agricultural Soil	VEESDDDAVVEECIEELEELFMGLDRYPPTAVAVAIGTYLEGLLGALHDERQCTPDEIRELLREIESGVLAEQPPAE*
Ga0079221_108849922	3300006804	Agricultural Soil	MSPRDETNDDALVEECIEEMDGLFMALDRYPPTAVAVAIATYLEGLLGALLDERQCTADEVR
Ga0105240_112438371	3300009093	Corn Rhizosphere	MSLNDESDNDAVIEECIQELDEIVMSLDRYPPAAVAVALGTYLEGLLGALLDEGQCTAKEVRELLREIESGVLQEKPPAKP*
Ga0105240_114507772	3300009093	Corn Rhizosphere	DDDTAIEECIEELDELVMSLDRFPPAAVAVAMGTYLEGLLGALLDDGQCTTDEVRTLLREIESGVIESGPTAKEEQAPPEG*
Ga0105240_121332212	3300009093	Corn Rhizosphere	MSRVDKSDADAVVEECIEELDELVTSLDRYPPAAVAVALGTYLEGLLGALLDEGQCTADEVRKLLWEIESGVLQPQCPAEE*
Ga0105240_127384921	3300009093	Corn Rhizosphere	MSSTDETNDDALVEECIEELDELFMALDRYPPTAVAVAIATYLEGLLGALLDERQCTADE
Ga0126373_114147922	3300010048	Tropical Forest Soil	MLTLTDVGGKAVPMSRIDESADDAVIEECIEEIDELLVGLDRYSPSAVTVAIAAYLEGLLGALLDERQCTAEEVRQLLREIEAGVIDSVAAGD
Ga0134125_1000140513	3300010371	Terrestrial Soil	MTMSLIEESDDDAVVEECIEELEELFMSLDRYPPTAVAVAIATYLEGLLGALLDERQCTADEIRELLREIESGVLAEQPPAE*
Ga0134125_100073135	3300010371	Terrestrial Soil	MLKLTIQSRKEILMSLIDDSDDDTVIEECIEELDELVMSLDRFPPAAVAVAMGTYLEGLLGALLDDGQCTTDEVRTLLREIESGVIESGPTAKEEQAPPEG*
Ga0134125_101553193	3300010371	Terrestrial Soil	MSPTNETNDDALVEECIEELDGLFMALDHYPPAAVAVAIATYLEGLLGALLDERQCTADEVRELLREIEAGVLQPPSSAEK*
Ga0134125_102357331	3300010371	Terrestrial Soil	MSLVDESDDDAAVEACIEELDELVMSLDRYPPAAVAVAMGTYLEGLLGALLDERLCTAEEVRALLREIESGAIESRPPEEQAAPARR*
Ga0134125_102967392	3300010371	Terrestrial Soil	MPADTRYARVEFSSRKEIPMSLVDESDDDAVVEECIEELDELVMTLDRYPPTAVAVAIGTYLEGLLGALLDERQCTADEVRELLREIESGVIESGPRNEKAPPATR*
Ga0134125_110759211	3300010371	Terrestrial Soil	MSPVDSSDPDAVVEECIGELEELVMSLDRYPPAAVAVALGTYLEGLLGALLDEGQCTADEIRKLLWEIESGVLQPQCPAEE*
Ga0134125_111087671	3300010371	Terrestrial Soil	MPLIDESDEEAVVEECIEELEELVMSLDRYPPAAVAVAIGTYFEGLLGALLDEHQCTADEIRDLLREIESGVLD*
Ga0134125_111770922	3300010371	Terrestrial Soil	MSPTDEADDDALVEECIEELDELVMALDRYPPAAVAVAIGTYLEGLLGALLDERQCTADEVRQLLREIEAGVLQPPSSAEK*
Ga0134125_114716982	3300010371	Terrestrial Soil	PTDETNDDALVEECIEELDGLFMALDRYPPTAVAVAIATYLEGLLGALLDERPCSADEVRELLREIEAGVLQPPSSAEK*
Ga0134125_115436022	3300010371	Terrestrial Soil	MSHGKEIAMSLIDESDDDAVVEECIEELDELVMSLDRYPPAAVAVAMGTYLEGLLGALLDEHQCTADEVRELLREIESGVIDSGPKEEPPPTRR*
Ga0134125_118843042	3300010371	Terrestrial Soil	MSLDEESDDDALVEDCIAELDKLVMSLDRYPPAAIVVALGTYFEGLLGALLDEGLCTPDDVRKILREIKSGVLEPQGSPQE*
Ga0134128_1000474210	3300010373	Terrestrial Soil	MSLLDQSGDDTVLEECIKELDELVMSLDRYPAAAVAVAMGAHLEGLLGALLDERRCTAEEVRELLHKIESGALDQEAALEDETSRER*
Ga0134128_100089038	3300010373	Terrestrial Soil	MSLIEHSADDTILEECIEELDELVMSLDRYPPTAVAVAMGTYLESLLGALLDERQCTAEDVRELLREIESGLLEESASKEH*
Ga0134128_1001130713	3300010373	Terrestrial Soil	MSQIDELGEDAMIEDCIEELGDLVMSLDRYPPAAVAVALGTYLEGLLGALLDEHQCTAEEVRKLLSEIESGVLQPQRPATE*
Ga0134128_100487075	3300010373	Terrestrial Soil	MLKLTIQSRNEILMSLIDDSDDDTVIEECIEELDELVMSLDRFPPAAVAVAMGTYLEGLLGALLDDGQCTTDEVRTLLREIESGVIESGPTAKEEQAPPEG*
Ga0134128_102864503	3300010373	Terrestrial Soil	MPLIDESHADAVVEECVEELEELMMGLDRYPPAAIAVALGTYLEGLLGALLDERRCTAEEVCELLREIESGVIGQAPEPAPL*
Ga0134128_103451342	3300010373	Terrestrial Soil	MSPRDETNDDALVEECIEELDGLFMALDRYPPTAVVVAIATYLEGLLGALLDERQCTAEEVRELLREIEAGVLQPPSPAEK*
Ga0134128_107025362	3300010373	Terrestrial Soil	MPLIDESDEEAVVEECIEELEELVMSLDRYPPAAVAVAIGTYFEGLLGALLDEHQCTADEIRELLREIESGVLD*
Ga0134128_110507911	3300010373	Terrestrial Soil	LVEECIEELDELVMALDRYPPAAVAVAIATYLEGLLGALLDERQCTADEVRQLLREIEAGVLQPPSSPEK*
Ga0134128_115130161	3300010373	Terrestrial Soil	MSPTDETDDDSLVEECIEELEDLVMSLDRYPPAAIAVAIGTYLEGLLGALLDERQCTAD
Ga0136821_12398241	3300010387	Sediment	MNDHPNCGMKDIPDSGDDAAVEECIEALDEFVATLDRYPPGAIAVAIGTYFEGLVGALLDEHQCTADEVREFLREIESGILQPQGPT*
Ga0134126_100164346	3300010396	Terrestrial Soil	MLKLTIQSRKEILMSLIDDSDDDTVFEECIEELDELVMSLDRFPPAAVAVAMGTYLEGLLGALLDDGQCTTDEVRTLLREIESGVIESGPTAKEEQAPPEG*
Ga0134126_100427573	3300010396	Terrestrial Soil	MSLVDESDDDAVVEECIEELNELVMSLDRYPAAVVAVAIGTYLEGLLGALLDDRQCTVNEVRALLREIESGVIESGPSGEQAAPAGR*
Ga0134126_102016993	3300010396	Terrestrial Soil	MSLIDESDDDAAVEECIEELEELVMTLDRYPPAAIVLAIGTYLEGLLGAMFDERQCTADEVRELLREIESGILQSQGPPKE*
Ga0134126_102733042	3300010396	Terrestrial Soil	MEIPMSLIERSADDTILEECIEELDELVMSLDRFPPTAVAVAMGTYLESLLGALLDERQCTAEDVRELLREIESGLLEESASKEH*
Ga0134126_105758452	3300010396	Terrestrial Soil	MPLIEHSADDNILEECIEELDELVMSLDRFPPTAVAVAMSTHLASLLGALLDERQCTAEDVRELLREIESGVLEENGSMER*
Ga0134126_109527652	3300010396	Terrestrial Soil	MLLIDESDDDAVVEECMEELQELVMSLDRFPPAAVAVAMGTHLEGLLGALLDDRQCTAEEVRTLLREIETGVIGSGPAA*
Ga0134126_110348342	3300010396	Terrestrial Soil	MSPTDETDDDSLVEECIEELDGLVVALDHYPPAAVAVALGTCLEGLLGALLDERQCTADEVRELLREIEAGVLQPPSSAEK*
Ga0134126_113908941	3300010396	Terrestrial Soil	MVVVPMSQIDESDEDAMIEECIEELDDLVMSLDRYPPAAVAVALGTYLEGLLGALLDEHQCTAEEVRKLLSGIESGVLQPQRPTTE*
Ga0134126_115481652	3300010396	Terrestrial Soil	TVVEECIEELEELLMSLDRFPPAAVAVAMATYLEGLLGALVDERQCTADEVRDLLREMESGVAEQKPPAER*
Ga0134126_116750351	3300010396	Terrestrial Soil	MSLIDETDDDAAVEKCIEELEELVMSLDRYRPAAIAVAIGTYLEGLLGALLDERQCTADEVRELLREIESGVLQPQIPTEK*
Ga0134126_129793601	3300010396	Terrestrial Soil	MSPTDEADDDALVEECIEELDELVMALDRYPPAAVAVAIGTYLEGLLGALLDERQCTADEVRQLLREIEAGVLQPPSSAER*
Ga0134127_107209222	3300010399	Terrestrial Soil	MLKLTIQSRNEILMSLIDDSDDDTVFEECIEELDELVMSLDRFPPAAVAVAMGTYLEGLLGALLDDGQCTTDEVRTLLREIESGVIESGPTAKEEQAPPEG*
Ga0157370_103173902	3300013104	Corn Rhizosphere	MLKLTIQSRKEILMSLIDDSDDDTAIEECIEELDELVMSLDRFPPAAVAVAMGTYLEGLLGALLDDGQCTTDEVRTLLREIESGVIESGPTAKEEQAPPEG*
Ga0157370_112730031	3300013104	Corn Rhizosphere	MIDHSADDSILEECIEELDELVMSLDRFPPTAVAVAMSTHLASLLGALLDERQCTAEDVRELLREIESGVLEENASKER*
Ga0157372_132537042	3300013307	Corn Rhizosphere	MSPTDETNDDAFVEECIEELGELVMALDRYPPAAVAVAIGTYLEGLLGALLDERQCTAEEVRELLREIESGVLQPQGPRKE*
Ga0187809_100010674	3300017937	Freshwater Sediment	MNDHPNRGMKDIPDYGDDAAVEECLEAIDKFVATLDRYPPGAIAVAMGTYFEGLVGALLDEHQCTADEVREFLREIESGILQPQGPT
Ga0187809_100069445	3300017937	Freshwater Sediment	MSLIDETCDDAAIGECIEELEELLMSLDRHDPAAVAAALATHLEGLLGALLEEGQCTARDVRELLRRIESGVLREEPGSAPG
Ga0187809_100111585	3300017937	Freshwater Sediment	MSLIHQHDADNSGADALVDECIEELDELVMNLDRYPPTAVAVAMGSHLEGLLGALLDEQLCTADEVRELLRQIEAGVLQEQPPLKR
Ga0187815_101953352	3300018001	Freshwater Sediment	MSLREESDDDAVVEECIEELDELVMSLDRYPPAAVAVALSTYLEGLLGALLDERQCTAEEVRELLREIESGVLTAHAPAKR
Ga0206356_114836102	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	VSHEKEIPMSLLDQSGDDTVLEECIEELDELVMSLDRYPAAAVAVAMGAHLEGLLGALLDERRCTAEEVRELLHKIESGALDQEAALEDETSRER
Ga0207707_108996651	3300025912	Corn Rhizosphere	MSLIDDSDDDTAIEECIEELDELVMSLDRFPPAAVAVAMGTYLEGLLGALLDDGRCTTDEVRTLLREIESGVIESGPTAKEEQAPPEG
Ga0207695_100704065	3300025913	Corn Rhizosphere	MPLIEHSADDNILEECIEELDELVMSLDRFPPTAVAVAMGTYLESLLGALLDERQCTAEDVRELLREIESGVLEENASKER
Ga0207660_110822882	3300025917	Corn Rhizosphere	MSLIDHSGDDAALEECIEELDELVMSLDRYPAVAVAVAIGTHLEGLLGALIDERQCTAEEVRELLREIESGALKYEASTER
Ga0207664_105570581	3300025929	Agricultural Soil	MSLIEHSADDTILEECIEELDELVMSLDRFPPTAVAVAMGTYLESLLGALLDERQCTAEDVRELLREIESGVLEENASKER
Ga0207667_109890042	3300025949	Corn Rhizosphere	MSLVDESDDDAAVEACIEELDELVMSLDRFPPAAVAVAMGTYLEGLLGALLDDGQCTTDEVRTLLREIESGVIESGPTAKEEQAPPEG
Ga0209581_10255152	3300027706	Surface Soil	MSLIEESDDDALVEECIEELEELVMTLDRYPPATVAVAIGTYLEGLLGALLDEHQCTAEEVHELLREIEAGVLQPQTSAPK
Ga0209581_10835981	3300027706	Surface Soil	AMFLTDDSGGDAMVEECIAELKEMIMSLERYPPAAVAVALSTYLEGLLGALLDERQCTAAEIRELLREIESGVIDAGPPRPG
Ga0209178_12087412	3300027725	Agricultural Soil	MSPTDETNDDALVEECIEELDGVFMALERYPPAAVAVAIATYLEGLLGALLDERQCTADEVRELLREIEAGVLQPPSSAQK
Ga0209167_100438872	3300027867	Surface Soil	MSLIKEPDDDAIVEECIEELDELLMSLDRFPPTAVAVAIGTCLEGLLGALLDEGHCTAAEARELLREIESGVLEEEPPAR
Ga0209062_10625413	3300027965	Surface Soil	MPLLDESDDDAVVEECLEELDELVMSLDRFPPTAVAVAMSTYLEGLLGALLDEGQCTADEVRELLREIESGVLEAQTPGKR
Ga0209062_10875632	3300027965	Surface Soil	MEGSLAMFLTDDSGGDAMVEECIAELKEMIMSLERYPPAAVAVALSTYLEGLLGALLDERQCTAAEIRELLREIESGVIDAGPPRPG
Ga0209062_12939482	3300027965	Surface Soil	MSLVEQSDDDALVEECIEELDELVMSLDRFPAAAVAIALSTYLEGLLGALLDERQCTAEEIRELLREIESGAIESVLPREDEAATKR
Ga0307374_100469786	3300031670	Soil	MSLNDGKDDDTVIEECIEELEELVMSLDRYPPAAVAVAMGTYLEGLLGALLDERQCTAAEVRELLREIERGALQLKPEPLQRER
Ga0310686_1130266482	3300031708	Soil	MALIDESNDELVVEECIQELDELIMGLDRYPPAAVAVAMGTYLEGLLGALLDEDQCTAEDVRELLREIEAGVLEEQPPAKR
Ga0335085_118157452	3300032770	Soil	MSPTNEPNDDALVEECIEELDGLVMALDRYPAAAVAVALGTYLEGLLGALLDERQCTADEVRQLLREIETGVLQPPSSADR
Ga0335078_100822705	3300032805	Soil	MSLIRQPEDETTDDDTTIDECIEELDELVMSLDRYPPTAVAVAMGAYLEGLLGALLDEQLCTTEEVRELLKEIESGVLDEPVTGR
Ga0335074_100070663	3300032895	Soil	LIDESDDDAVVEECIQELDELVMALDRYPPAAVAVAIGTYLEGLLGALLDERQCTADEVRELLREIESGVLEPQGPAKE
Ga0335074_101538534	3300032895	Soil	MSRISESDDNVLVEECIKELEELIMSLDRYPPAAIVVAMGTCLEGLLGALVDERQCTSDEVREILHEIESGVLQPQGPATE
Ga0335074_102662611	3300032895	Soil	MSLIDQSDEEAVVEECIEELDEIIMALDRYPPAAVAVAIGTYLEGLLGALMDERQCTADEVRELLREIESGVLESQDLAKE
Ga0335074_103077702	3300032895	Soil	MSLIDESDDESVVEECIQELDELMMSLDRYPPAAVAVATGTYLEGLLGALLDEDRCTAEDVRELLREIEAGVLEQQTPAGR
Ga0335074_103094413	3300032895	Soil	MSLIDESDDDAAVEECIEELEELVMSLDRFPPAAIAAAMGTYLEGLLGVLLDERQCTAEEVRELLREIESGVLGEHAAG
Ga0335074_103784802	3300032895	Soil	MTLIDERGDDAAVEECIEELDELLMSFDRYPPAAVAVAIATYLEGLLGALLDEGQCTTDEIRELLREVESGVLAQPPPDRR
Ga0335074_104730383	3300032895	Soil	MGLHESPGSRRRMGKALMSLIEESDDDAVVEECIEELDELIIALDRYPPAAVAVAIGTYLEGLLGALLNERQCTADETRELLREIELGVLQSQRPATE
Ga0335074_104813703	3300032895	Soil	MSLIDESEDEAVVEECIQELDEIVMSLDRYPPAAVAVAIGTYLEGLLGALLDEGQCTADEARQLLREIESGVLEEPPTKR
Ga0335074_109619691	3300032895	Soil	MSLIDESDDESVVEECIQELDELMMSLDRYPPAAVAVAIGNYLEGLLGALLDEEQCTAEDIRELLRELEAGVLEQQPAAER
Ga0335074_112740882	3300032895	Soil	MSLIEEPDDEAVVEECIQELDELLMSLDRYPPVAVAVAMGTCLEGLLGAILDEDQCTAEDVRELLREIEAGVLEERPPAGR
Ga0335074_114746022	3300032895	Soil	MSLIDESDDDAVVEKCIEELDELVMSLDRYPPAAVAIALGTYLEGLLGALLDERQCTADEVRELLHEIEL
Ga0335075_1000028572	3300032896	Soil	MSLIDKSDDEGLVEECVEELDELIMGMDRFPPAAVAAAMGTHLEGLLGAMLDEGQCTAEEIRQLLQEIETGVLQLQPPANP
Ga0335075_1000347229	3300032896	Soil	LSLIDESDDDAVVEECIQELDELVMALDRYPPAAVAVAIGTYLEGLLGALLDERQCTADEVRELLREIESGVLEPQGPAKE
Ga0335075_1000838621	3300032896	Soil	MSRISESDDNVLVEECIKELEELIMSLDRYPPAAIVVAMGTCLEGLLGALVDERQCTSDEVREILHEIESGVLQPQGPAT
Ga0335075_1001131213	3300032896	Soil	MTLIDERGDDAAVEECIEELDELLMSFDRYSPAAVAVAIATYLEGLLGALLDEGQCTTDEIRELLREVESGVLAQPPPDRR
Ga0335075_1001331511	3300032896	Soil	MSPTDEADDDALVEECIEELDELVMALDRYPPAAVAVAIGTYFEGLLGALLDERQCTADEVRQLLREIEAGVLQPPSSAEK
Ga0335075_100150324	3300032896	Soil	MSLTEESDDDALIQGCIEELERVVMSLDRYPPAAVVVAMGTYLEGFLGALLDEHLCTAEEARELLREIESGVFQPQGPAQE
Ga0335075_101874363	3300032896	Soil	MSPTDETNDDALVEECIEELDGLFMALDRYPPTAVAVAIATYLEGLLGALLDERQCTADEVRELLREIEAGVLQPPGSAEK
Ga0335075_104957142	3300032896	Soil	MSLIEEPDDAVVEECVQELDELVMSLDRYPPAAVAVAMGTYLEGLLGAILDEDLCTSEDVRELLREIEAGVLEEQPPARR
Ga0335075_104968752	3300032896	Soil	MSLVDPSGDDAAVEECIEELEELIMSLDRYPPAAVAVAMGTYLEGLLGALLDERQCTAEEVRELLREIESGVLEGPAPAER
Ga0335075_105839841	3300032896	Soil	DALVEECIEELDELVMALDRYPPAAVAVAIGTYLEGLLGALLDERLCTADEIRELLREIESGVLQPPGTDEK
Ga0335075_106641472	3300032896	Soil	MSLVEESDDDALVEGCIEELDELIMSLDRYPPAAVAVALSTCLEGLLGALLDERQCTADEIRELLREIESGVLQEQCPAGR
Ga0335075_112883341	3300032896	Soil	IDESGDDAAVEECIEELEELTLSLERFPPAALAVAMGTCLEGLLGALLDERRCTAAEVRELLRGIESGAIGAGGP
Ga0335075_116101982	3300032896	Soil	MSLIEEPDDEAVVEECIQELDELVMSLDRYPPAAVAVAIGTYLEGLLGAILDEDQCTPDDIRELLREIEAGVLEEQPPATR
Ga0335075_116198561	3300032896	Soil	MSRVDESDDEAVVEECIEKLDELVTSLDRYPPGAVAVAMGTYLEGLLGALLDERQCTPDEVRELLREIESGVLEAQGPAQK
Ga0335073_105090961	3300033134	Soil	MSLIEEPDDEAVVEECIQELDELLMSLDRYPPVAVAVAMGTCLEGLLGAILDEDQCTAEDVRELLREIEAGVLE
Ga0316624_123092152	3300033486	Soil	MPSIEESDDDALIEECIEELDELVMSLDRYPPAAVAVALGTYLEGLLGALLDERHCTAEEVRELLREIESGVIES

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086819

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences