Metagenome / Metatranscriptome Family F086936

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086936
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	49 residues
Representative Sequence	LEIRRIAQQMSLGLAPIDEHKQRRPFWASLLKKQSAQPNFKLQASMEKV
Number of Associated Samples	93
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.27 %
% of genes from short scaffolds (< 2000 bps)	98.18 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.727 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (10.000 % of family members)
Environment Ontology (ENVO)	Unclassified (50.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (65.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.38% β-sheet: 0.00% Coil/Unstructured: 76.62%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00437	T2SSE	68.18
PF00482	T2SSF	0.91
PF02880	PGM_PMM_III	0.91
PF00512	HisKA	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.91
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.91

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.73 %
Unclassified	root	N/A	7.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.73 %
Unclassified	root	N/A	7.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.73 %
Unclassified	root	N/A	7.27 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	45.45 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	23.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.64 %
Unclassified	root	N/A	7.27 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	45.45 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	23.64 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	11.82 %
Unclassified	root	N/A	7.27 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	45.45 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	23.64 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	11.82 %
Unclassified	root	N/A	7.27 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	45.45 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	23.64 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	8.18 %
Unclassified	root	N/A	7.27 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	2.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	45.45 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	23.64 %
unclassified Myxococcales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales	8.18 %
Unclassified	root	N/A	7.27 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	2.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	45.45 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	23.64 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	8.18 %
Unclassified	root	N/A	7.27 %
Geobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter	2.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	45.45 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	23.64 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	8.18 %
Unclassified	root	N/A	7.27 %
unclassified Geobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter	2.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	45.45 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	23.64 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	8.18 %
Unclassified	root	N/A	7.27 %
Geobacter sp. FeAm09	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp. FeAm09	2.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000953\|JGI11615J12901_10129524	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	745	Open in IMG/M
3300004643\|Ga0062591_101478898	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	678	Open in IMG/M
3300004643\|Ga0062591_102869864	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300005093\|Ga0062594_101565891	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	680	Open in IMG/M
3300005175\|Ga0066673_10524105	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	696	Open in IMG/M
3300005294\|Ga0065705_10784878	All Organisms → cellular organisms → Bacteria → Acidobacteria	616	Open in IMG/M
3300005294\|Ga0065705_10906941	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300005331\|Ga0070670_100892256	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300005331\|Ga0070670_100954550	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp. FeAm09	779	Open in IMG/M
3300005332\|Ga0066388_101534016	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1168	Open in IMG/M
3300005336\|Ga0070680_100686070	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300005343\|Ga0070687_100674629	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	719	Open in IMG/M
3300005365\|Ga0070688_101329578	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300005366\|Ga0070659_100491699	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1045	Open in IMG/M
3300005441\|Ga0070700_101775252	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300005444\|Ga0070694_100659410	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300005457\|Ga0070662_100485563	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1029	Open in IMG/M
3300005459\|Ga0068867_101750027	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300005518\|Ga0070699_100638535	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	971	Open in IMG/M
3300005548\|Ga0070665_102665698	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300005549\|Ga0070704_100607300	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	962	Open in IMG/M
3300005564\|Ga0070664_102272362	Not Available	515	Open in IMG/M
3300005614\|Ga0068856_100961001	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	873	Open in IMG/M
3300005718\|Ga0068866_10185207	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1233	Open in IMG/M
3300005841\|Ga0068863_100443790	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1273	Open in IMG/M
3300005842\|Ga0068858_100808830	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	914	Open in IMG/M
3300005844\|Ga0068862_101718834	All Organisms → cellular organisms → Bacteria → Acidobacteria	636	Open in IMG/M
3300006794\|Ga0066658_10119882	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1282	Open in IMG/M
3300006806\|Ga0079220_11201153	All Organisms → cellular organisms → Bacteria → Acidobacteria	626	Open in IMG/M
3300006845\|Ga0075421_100604295	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1288	Open in IMG/M
3300006845\|Ga0075421_101819672	All Organisms → cellular organisms → Bacteria → Acidobacteria	654	Open in IMG/M
3300006846\|Ga0075430_100211435	Not Available	1609	Open in IMG/M
3300006847\|Ga0075431_101453127	All Organisms → cellular organisms → Bacteria → Acidobacteria	644	Open in IMG/M
3300006853\|Ga0075420_101155158	All Organisms → cellular organisms → Bacteria → Acidobacteria	665	Open in IMG/M
3300006880\|Ga0075429_100158855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1979	Open in IMG/M
3300006969\|Ga0075419_10636234	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	752	Open in IMG/M
3300009093\|Ga0105240_11091714	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	849	Open in IMG/M
3300009098\|Ga0105245_11063646	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	855	Open in IMG/M
3300009101\|Ga0105247_11452050	All Organisms → cellular organisms → Bacteria → Acidobacteria	557	Open in IMG/M
3300009147\|Ga0114129_11440182	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	849	Open in IMG/M
3300009147\|Ga0114129_13144696	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300009162\|Ga0075423_10299705	Not Available	1685	Open in IMG/M
3300009162\|Ga0075423_11326890	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300009174\|Ga0105241_10301020	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1376	Open in IMG/M
3300009174\|Ga0105241_12614964	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300009176\|Ga0105242_12624425	All Organisms → cellular organisms → Bacteria → Acidobacteria	553	Open in IMG/M
3300009551\|Ga0105238_11625297	All Organisms → cellular organisms → Bacteria → Acidobacteria	676	Open in IMG/M
3300009789\|Ga0126307_11722949	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300009840\|Ga0126313_11576905	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300010037\|Ga0126304_11146447	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300010039\|Ga0126309_10763397	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
3300010044\|Ga0126310_11153922	All Organisms → cellular organisms → Bacteria → Acidobacteria	619	Open in IMG/M
3300010362\|Ga0126377_11680839	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	710	Open in IMG/M
3300010375\|Ga0105239_12797725	All Organisms → cellular organisms → Bacteria → Acidobacteria	569	Open in IMG/M
3300010399\|Ga0134127_12496860	All Organisms → cellular organisms → Bacteria → Acidobacteria	596	Open in IMG/M
3300010401\|Ga0134121_10277853	Not Available	1475	Open in IMG/M
3300010401\|Ga0134121_11050223	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300010401\|Ga0134121_11378412	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	714	Open in IMG/M
3300010403\|Ga0134123_10892078	Not Available	894	Open in IMG/M
3300010403\|Ga0134123_12572954	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300011119\|Ga0105246_11162164	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	708	Open in IMG/M
3300011119\|Ga0105246_11335785	All Organisms → cellular organisms → Bacteria → Acidobacteria	666	Open in IMG/M
3300011119\|Ga0105246_11801933	All Organisms → cellular organisms → Bacteria → Acidobacteria	585	Open in IMG/M
3300012896\|Ga0157303_10083540	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp. FeAm09	738	Open in IMG/M
3300012907\|Ga0157283_10320111	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300013100\|Ga0157373_11524033	Not Available	511	Open in IMG/M
3300013102\|Ga0157371_11386940	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300013306\|Ga0163162_12369533	All Organisms → cellular organisms → Bacteria → Acidobacteria	610	Open in IMG/M
3300014325\|Ga0163163_12295186	All Organisms → cellular organisms → Bacteria → Acidobacteria	598	Open in IMG/M
3300014497\|Ga0182008_10661525	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300014745\|Ga0157377_11362004	Not Available	558	Open in IMG/M
3300014968\|Ga0157379_11847292	All Organisms → cellular organisms → Bacteria → Acidobacteria	594	Open in IMG/M
3300021445\|Ga0182009_10648379	All Organisms → cellular organisms → Bacteria → Acidobacteria	568	Open in IMG/M
3300025796\|Ga0210113_1010791	All Organisms → cellular organisms → Bacteria	1940	Open in IMG/M
3300025901\|Ga0207688_10294594	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300025911\|Ga0207654_11019268	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300025918\|Ga0207662_10335484	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300025923\|Ga0207681_10735360	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300025925\|Ga0207650_10463676	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1055	Open in IMG/M
3300025925\|Ga0207650_11802321	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300025932\|Ga0207690_10479550	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1004	Open in IMG/M
3300025933\|Ga0207706_11551742	All Organisms → cellular organisms → Bacteria → Acidobacteria	538	Open in IMG/M
3300025935\|Ga0207709_10762403	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300025937\|Ga0207669_11100810	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300025938\|Ga0207704_10209150	All Organisms → cellular organisms → Bacteria → Acidobacteria	1434	Open in IMG/M
3300025940\|Ga0207691_10976269	All Organisms → cellular organisms → Bacteria → Acidobacteria	707	Open in IMG/M
3300025941\|Ga0207711_12129175	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300025945\|Ga0207679_11333035	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	659	Open in IMG/M
3300025945\|Ga0207679_11522906	All Organisms → cellular organisms → Bacteria → Acidobacteria	613	Open in IMG/M
3300025960\|Ga0207651_10968335	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp. FeAm09	759	Open in IMG/M
3300026035\|Ga0207703_10464068	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1185	Open in IMG/M
3300026095\|Ga0207676_10282733	Not Available	1507	Open in IMG/M
3300026095\|Ga0207676_10429642	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1241	Open in IMG/M
3300026116\|Ga0207674_10045652	All Organisms → cellular organisms → Bacteria → Proteobacteria	4505	Open in IMG/M
3300026116\|Ga0207674_10948500	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300027775\|Ga0209177_10402761	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300031538\|Ga0310888_10760924	All Organisms → cellular organisms → Bacteria → Acidobacteria	598	Open in IMG/M
3300031716\|Ga0310813_10429609	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1142	Open in IMG/M
3300031901\|Ga0307406_11117248	All Organisms → cellular organisms → Bacteria → Acidobacteria	681	Open in IMG/M
3300031911\|Ga0307412_10896845	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	777	Open in IMG/M
3300032002\|Ga0307416_100088195	All Organisms → cellular organisms → Bacteria → Acidobacteria	2652	Open in IMG/M
3300032002\|Ga0307416_103049713	All Organisms → cellular organisms → Bacteria → Acidobacteria	560	Open in IMG/M
3300032126\|Ga0307415_100472511	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1089	Open in IMG/M
3300033412\|Ga0310810_11085371	All Organisms → cellular organisms → Bacteria → Acidobacteria	669	Open in IMG/M
3300034172\|Ga0334913_079586	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	691	Open in IMG/M
3300034479\|Ga0314785_021098	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300034659\|Ga0314780_047918	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	845	Open in IMG/M
3300034668\|Ga0314793_103820	All Organisms → cellular organisms → Bacteria → Acidobacteria	595	Open in IMG/M
3300034669\|Ga0314794_040158	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	846	Open in IMG/M
3300034673\|Ga0314798_045439	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	807	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	60.00%
Environmental	Environmental	40.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	60.00%
Terrestrial	Environmental → Terrestrial	39.09%
Aquatic	Environmental → Aquatic	0.91%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	46.36%
Soil	Environmental → Terrestrial → Soil	39.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.73%
Marine	Environmental → Aquatic → Marine	0.91%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	31.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.00%
Soil	Host-Associated → Plants → Rhizosphere → Soil	14.55%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.73%
Loam	Environmental → Terrestrial → Soil → Loam	9.09%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	31.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	14.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.27%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.45%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.91%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	6.36%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.45%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.45%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.73%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.73%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.82%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.91%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025796	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M
3300034479	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034668	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034669	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034673	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11615J12901_101295241	3300000953	Soil	SKIALEIRRVAQQMALGLAPIDESKQRRPFWAGLLKKQAAQPNFKLQASMEKV*
Ga0062591_1014788982	3300004643	Soil	RVAQQLSLGLAPIDESKQKRPFWAGLLKKQSAQPNFKLQPSVEKV*
Ga0062591_1028698642	3300004643	Soil	PTSKIALEIRRIAQQMSLGVAPIDESKQRRPFWASLLKKQSAQPNFKLQASMEKV*
Ga0062594_1015658911	3300005093	Soil	EQMSVGLAPIDESKQRKSFFGSLLKKQPAPSQFKLQASMEKV*
Ga0066673_105241051	3300005175	Soil	RVAQQISISVAPIYESKQRRPFWAALLRKQSAQPNFNLQTSMEKV*
Ga0065705_107848781	3300005294	Switchgrass Rhizosphere	TSKIALEIRRIAQQMSLGVAPIDESKQRRPFWASLLKKQSAQPNFPLQTSMEKV*
Ga0065705_109069411	3300005294	Switchgrass Rhizosphere	MSMGLAPIDESKQKRPFWAALLKKQSAQPNFKLQASMEKV*
Ga0070670_1008922561	3300005331	Switchgrass Rhizosphere	QAEPTSKIALEIRRIAQQMSLGLAPIDEHKQRRPFWASLLKKQSAQPNFKLQASMEKV*
Ga0070670_1009545501	3300005331	Switchgrass Rhizosphere	EPTSKIALEIRRIAQQMSLGLAPIDEHKQRRPFWASLLKKQSAQPNFKLQASMEKV*
Ga0066388_1015340161	3300005332	Tropical Forest Soil	AQQMSLGVAPIDESKQRRPFWAGLLKKQSAQPNFKLHASMEKV*
Ga0070680_1006860702	3300005336	Corn Rhizosphere	PTSKIALEIRRIAEQMSVGLAPIDESKQRKSFFGSLLKKQPAPSQFKLQASMEKV*
Ga0070687_1006746291	3300005343	Switchgrass Rhizosphere	KIALEIRRIAQQISLGLAPIDEHKQRRPFWAGLLKKQAAQPNFKLQTSMEKV*
Ga0070688_1013295781	3300005365	Switchgrass Rhizosphere	SLGLAPIDEHKQRRPFWASLLKKQSAQPNFKLQASMEKV*
Ga0070659_1004916992	3300005366	Corn Rhizosphere	LEIRRIAQQMSLGLAPIDEHKQRRPFWASLLKKQSAQPNFKLQASMEKV*
Ga0070700_1017752521	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	RIAEQMSLGIAPIDHSKQRRPFWASLLKKQSAQPNFKLQASMEKV*
Ga0070694_1006594102	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	EPTSKIALEIRRIAQQISLGLAPIDEHKQRRPFWAGLLKKQAAQPNLKLQASMEKV*
Ga0070662_1004855631	3300005457	Corn Rhizosphere	LIQAEPTSKIALEIRRIAQQISLGVAPIDESKQRRPFWASLLKKQSAQPNFKLQASMEKV
Ga0068867_1017500271	3300005459	Miscanthus Rhizosphere	EQMSLSIAPIDHSKQRRPFWASLLKKQSAQPNLKLQASMEKV*
Ga0070699_1006385352	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	ALEIRRIAQQISLGLAPIDEHKQRRPFWAGLLKKQAAQPNLKLQASMEKV*
Ga0070665_1026656981	3300005548	Switchgrass Rhizosphere	RRIAEQISLGVAPIDNSKQRRPFWSSFLKKQPAQSNFKLQASMEKV*
Ga0070704_1006073001	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	KIALEIRRIAQQMSMGLSPIDESKQRKPFWAALLKKQSAQANFKLQTSMEKV*
Ga0070664_1022723621	3300005564	Corn Rhizosphere	PLIQAEPTSKIALEIRRVAQQISLGLAPIDEHKQRRPFWAGLLKKQAAQPNFKLQTSMEKV*
Ga0068856_1009610012	3300005614	Corn Rhizosphere	RRIAQQMELGVAPIDQLKQRRPFWASLLKKQSAQPNFKLQASMEKV*
Ga0068866_101852071	3300005718	Miscanthus Rhizosphere	APIDEHKQRRPFWAGLLKKQAAQPNLKLQASMEKV*
Ga0068863_1004437902	3300005841	Switchgrass Rhizosphere	SKIALEIRRIAQQMSLGVAPIDESKQRRPFWASLLKKQSAQPNFKLQASMEKV*
Ga0068858_1008088301	3300005842	Switchgrass Rhizosphere	LEIRRIAQQISLGLAPIDEHKQRRPFWAGLLKKQAAQPNFKLQTSMEKV*
Ga0068862_1017188342	3300005844	Switchgrass Rhizosphere	SKIALEIRRIAQQMALGLAPIDESKQRRPFWAGLLKKQAAQPNFKLQASMEKV*
Ga0066658_101198821	3300006794	Soil	ISLAVAPIDQLKQRRPFWAALLRKQAAQPNFKLQTSMEKV*
Ga0079220_112011531	3300006806	Agricultural Soil	EPTSKIALEIRRIAQQMSLGVAPIDESKQRRPFWASLLKKQSAQQNFKLQASMEKV*
Ga0075421_1006042951	3300006845	Populus Rhizosphere	TSKIALEIRRIGEQISMGLAPIDQSKQRRPFWAGLLKKQSAQPNFKLQPSVE*
Ga0075421_1018196722	3300006845	Populus Rhizosphere	SKIALEIRRIGEQISMGLAPIDQSKQRRPFWAGLLKKQSAQPNFKLQTSMEKV*
Ga0075430_1002114353	3300006846	Populus Rhizosphere	EIRRIGEQISMGLAPIDQSKQRRPFWAGLLKKQSAQPNFKLQTSMEKV*
Ga0075431_1014531272	3300006847	Populus Rhizosphere	ALEIRRIGEQISMGLAPIDQSKQRRPFWAGLLKKQSAQPNFKLQTSMEKV*
Ga0075420_1011551581	3300006853	Populus Rhizosphere	PTSKIALEIRRIGEQISMGLAPIDQSKQRRPFWAGLLKKQSAQPNFKLQTSMEKV*
Ga0075429_1001588553	3300006880	Populus Rhizosphere	GEQISMGLAPIDQSKQRRPFWAGLLKKQSAQPNFKLQTSMEKV*
Ga0075419_106362341	3300006969	Populus Rhizosphere	IRRIGEQISMGLAPIDQSKQRRPFWAGLLKKQSAQPNFKLQPSVE*
Ga0105240_110917142	3300009093	Corn Rhizosphere	IAQQISLGVAPIDESKQRRPFWASLLKKQSAQPNFKLQASMEKV*
Ga0105245_110636462	3300009098	Miscanthus Rhizosphere	IAQQISLGLAPIDEHKQRRPFWAGLLKKQAAQPNLKLQASMEKV*
Ga0105247_114520501	3300009101	Switchgrass Rhizosphere	ISMGVAPLDTKQRRPFWAGLLKKQSAQPNFKLQASMEKV*
Ga0114129_114401821	3300009147	Populus Rhizosphere	RVAQQISLGLAPIDGSKQRRPFWAALLKKQSAQPNFKLQTSMEKV*
Ga0114129_131446962	3300009147	Populus Rhizosphere	VAEQMALGIAPIDRSKQRRPFWASLIKKQSAQPNFKLQASMEKV*
Ga0075423_102997053	3300009162	Populus Rhizosphere	PLVQAEPTSKIAMEIRRIAEQMSLAIAPIDHSKQRRPFWASLLKKQSVQPNFKLQASMEKV*
Ga0075423_113268902	3300009162	Populus Rhizosphere	LEIRRIAEQMSLGIAPIDHSKQRRPFWASLLKKQSAQPNLKLQASMEKV*
Ga0105241_103010202	3300009174	Corn Rhizosphere	VQAEPTSKIATEIRRIAEQMSLGVAPIDLSKQRRPFWASLLKKQSAQPNLKLQASMEKV*
Ga0105241_126149641	3300009174	Corn Rhizosphere	TSKIALEIRRIAQQMSLGVAPIDESKQRRPFWASLLKKQSAQPNFKLQTQMEKV*
Ga0105242_126244252	3300009176	Miscanthus Rhizosphere	GLAPIDEHKQRRPFWASLLKKQSAQPNFKLQASMEKV*
Ga0105238_116252972	3300009551	Corn Rhizosphere	PTSKIALEIRRIAQQMSLGLAPIDEHKQRRPFWASLLKKQSAQPNFKLQASMEKV*
Ga0126307_117229492	3300009789	Serpentine Soil	VAQQMSLGVAPIDESKQRRPFWASLLKKQSAQPNLKLQTSMEKV*
Ga0126313_115769052	3300009840	Serpentine Soil	LAVAPIDESKQRRPFWASLLKKQSAQPNFKLQASMEKV*
Ga0126304_111464472	3300010037	Serpentine Soil	RRIAQQMSLGVAPIDESKQRRPFWASLLKKQSAQANLKLQPSMEKV*
Ga0126309_107633972	3300010039	Serpentine Soil	IAQQMSLGLAPIDEAKQRRPFWAGLLKKQSAQPNFKLQTSMEKI*
Ga0126310_111539221	3300010044	Serpentine Soil	VAPIDEKQRRPFWASLLKKQSAQPNFKLEPSMEKV*
Ga0126377_116808392	3300010362	Tropical Forest Soil	ALEIRRIAQEMSLGLAPIDQSKKSRPFWASLLKKQSAQPNFNLQTSMEKV*
Ga0105239_127977252	3300010375	Corn Rhizosphere	PIDESKQRRPFWAGLLKKQAAQPNFKLQASMEKV*
Ga0134127_124968601	3300010399	Terrestrial Soil	QAEPTSKIALEIRRIAQQMALGLAPIDESKQRRPFWAGLLKKQAAQPNFKLQASMEKV*
Ga0134121_102778532	3300010401	Terrestrial Soil	APIDEHKQRRTFRAGLLKKQAAQPNLKLQASMEKV*
Ga0134121_110502232	3300010401	Terrestrial Soil	IRRIAQQISLGLAPIDEHKQRRPFWSSLLKKQSAQPNFKLQASMEKV*
Ga0134121_113784122	3300010401	Terrestrial Soil	PTSKIALEIRRIAQQMALGLAPIDVSKQRRPFWAGLLKKQAAQPNFKLQASMEKV*
Ga0134123_108920782	3300010403	Terrestrial Soil	IAPIDHSKQRRPFWASLLKKQSAQPNFKLQASMEKV*
Ga0134123_125729541	3300010403	Terrestrial Soil	MSLGLAPIDEHKQRRPFWANLLKKQSAQPNFKLQASMEKV*
Ga0105246_111621642	3300011119	Miscanthus Rhizosphere	IAQQMALGLAPIDESKQRRPFWAGLLKKQAAQPNFKLQASMEKV*
Ga0105246_113357851	3300011119	Miscanthus Rhizosphere	IAQQMSLGLAPIDEHKQRRPFWASLLKKQSAQPNFKLQASMEKV*
Ga0105246_118019331	3300011119	Miscanthus Rhizosphere	AEPTSKIALEIRRIAQQMSLGVAPIDESKQRRPFWASLLKKQSAQPNFKLQASMEKV*
Ga0157303_100835402	3300012896	Soil	LGLAPIDEHKQRRPFWAGLLKKQAAQPNLKLQTSMEKV*
Ga0157283_103201112	3300012907	Soil	RRVAEQMALGIAPIDHSKQRRPFWASLIKKQSAQPNFKLQASMEKV*
Ga0157373_115240332	3300013100	Corn Rhizosphere	VQAEPTSKIALEIRRIAQQMALGLAPIDESKQRRPFWAGLLKKQAAQPNFKLQASMEKV*
Ga0157371_113869401	3300013102	Corn Rhizosphere	IAQQISLGLAPIDEHKQRRPFWAGLLKKQAAQPNFKLQTSMEKV*
Ga0163162_123695331	3300013306	Switchgrass Rhizosphere	SLEIRRIAQQMSLGVAPIDESKQRRPFWASLLKKQPAQPNFNLPQMEKV*
Ga0163163_122951861	3300014325	Switchgrass Rhizosphere	QAEPTSKIALEIRRIAEQISLGVAPIDNKQRRPFWAGLLKKQAPQPKLKLQASMEKV*
Ga0182008_106615251	3300014497	Rhizosphere	LEIRRIAQQTSLGVAPIDESKKRRPFWSSLLKKQPAQQNFKLQASMEKV*
Ga0157377_113620042	3300014745	Miscanthus Rhizosphere	SKIALEIRRIAQQISLGLAPIDEHKQRRPFWAGLLKKQAAQPNLKLQTSMEKV*
Ga0157379_118472922	3300014968	Switchgrass Rhizosphere	ISLGVAPIDESKQRRPFWASLLKKQSAQPNFKLQASMEKV*
Ga0182009_106483791	3300021445	Soil	LVQAEPTSKIALEIRRIAQQMSLGVAPIDESKQRRPFWASLLKKQSAQPNFKLQASMEKV
Ga0210113_10107914	3300025796	Natural And Restored Wetlands	AQQMSLGVAPIDESKQRRPFWASLLKKQSAQPNFNLQTSMEKV
Ga0207688_102945942	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	QAEPTSKIALEVRRIAQQMSLGVAPIEEASPRRGFLGSLLKKQQPQRQLKLQTSLEKV
Ga0207654_110192682	3300025911	Corn Rhizosphere	TSKIALEIRRIAQQMSLGVAPIDESKQRRPFWASLLKKQSAQPNFKLQTQMEKV
Ga0207662_103354842	3300025918	Switchgrass Rhizosphere	MIRRVAQQISLGLAPIDEHKQRRPFWAGLLKKQAAQPNLKLQTSMEKV
Ga0207681_107353601	3300025923	Switchgrass Rhizosphere	NLGTPLVQAEPTSKIALEIRRIAQQMALGLAPIDESKQRRPFWAGLLKKQAAQPNFKLQASMEKV
Ga0207650_104636762	3300025925	Switchgrass Rhizosphere	QMSLGLAPIDETRQRRPFWAGLLKKQSAQPNFKLQTSMEKV
Ga0207650_118023212	3300025925	Switchgrass Rhizosphere	MSLGVAPIDESKQRRPFWAGLLKKQAAQPNFKLQASMEKV
Ga0207690_104795501	3300025932	Corn Rhizosphere	APIDEHKQRRPFWASLLKKQSAQPNFKLQASMEKV
Ga0207706_115517421	3300025933	Corn Rhizosphere	LGTPLIQAEPTSKIALEIRRIAQQISLGLAPIDEHKQRRPFWAGLLKKQAAQPNLKLQASMEKV
Ga0207709_107624032	3300025935	Miscanthus Rhizosphere	IRRIAQQISLGLAPIDEHKQRRPFWAGLLKKQAAQPNLKLQASMEKV
Ga0207669_111008101	3300025937	Miscanthus Rhizosphere	QAEPTSKIALEIRRIAQQISLGLAPIDEHKQRRPFWAGLMKKQAAQPKLKLQTSMEKV
Ga0207704_102091502	3300025938	Miscanthus Rhizosphere	MSLGLAPIDEHKQRRPFWANLLKKQSAQPNFKLQASMEKV
Ga0207691_109762692	3300025940	Miscanthus Rhizosphere	IQAEPTSKIALEIRRVAQQISLGLAPIDEHKQRRPFWAGLLKKQAAQPNLKLQTSMEKV
Ga0207711_121291751	3300025941	Switchgrass Rhizosphere	LGLAPIDEHKQRRPFWASLLKKQSAQPNFKLQASMEKV
Ga0207679_113330351	3300025945	Corn Rhizosphere	APIDEHKQRRPFWAGLLKKQAAQPNFKLQTSMEKV
Ga0207679_115229062	3300025945	Corn Rhizosphere	AQQMSLGVAPIDESKQRRPFWASLLKKQSAQPNFKLQASMEKV
Ga0207651_109683351	3300025960	Switchgrass Rhizosphere	PTSKIALEIRRIAQQISLGLAPIDEHKQRRPFWAGLLKKQAAQPNFKLQTSMEKV
Ga0207703_104640681	3300026035	Switchgrass Rhizosphere	QMSLGVAPIDESKQRRPFWASLLKKQSAQPNFKLQASMEKV
Ga0207676_102827331	3300026095	Switchgrass Rhizosphere	RIAEQMSLGIAPIDHSKQRRPFWASLLKKQSAQPNFKLQASMEKV
Ga0207676_104296422	3300026095	Switchgrass Rhizosphere	ALEIRRIAQQISLGLAPIDEHKQRRPFWAGLLKKQAAQPNLKLQTSMEKV
Ga0207674_100456525	3300026116	Corn Rhizosphere	PLVQAEPTSKIALEIRRIAQQMSLGVAPIDESKQRRPFWASLLKKQSAQPNFPLQTSMEK
Ga0207674_109485001	3300026116	Corn Rhizosphere	EQMSLGIAPIDHSKQRRPFWASLLKKQSAQPNFKLQASMEKV
Ga0209177_104027611	3300027775	Agricultural Soil	QSEPTSKIALEIRRIAEQTSLGVAPIDESKQRRPFWSSLFKKQPAQSNFKLQASMEKV
Ga0310888_107609242	3300031538	Soil	EIRRIAQQMSLGVAPIDESKQRRPFWASLLKKQSAQPNFNLPQMEKV
Ga0310813_104296091	3300031716	Soil	EPTSKIAMEIRRIAEQMSLGIAPIDHSKQRRPFWASLLKKQSAQPNFKLQASMEKV
Ga0307406_111172482	3300031901	Rhizosphere	IQAEPTSKIALEIRRIAQQISLGLAPIDEHKQRRPFWAGLLKKQAAQPNLKLQTSMEKV
Ga0307412_108968452	3300031911	Rhizosphere	MEIRRIAQQMSLGLAPIDETKQRRPFWAGLIKKQSAQPNFKLQTSMEKV
Ga0307416_1000881951	3300032002	Rhizosphere	IAQQMSLGLAPIDETKQRRPFWAGLIKKQSAQPNFKLQTSMEKV
Ga0307416_1030497132	3300032002	Rhizosphere	QAEPTSKIATEIRRIAETISLGVAPIEEVSQRKGFLRSLLKKQPAQKQFKLQTSMEKV
Ga0307415_1004725112	3300032126	Rhizosphere	APIDESKQRRPFWASLLKKQSAQPNFKLQASMEKV
Ga0310810_110853711	3300033412	Soil	GTPLVQAEPTSKIAMEIRRIAEQMSLNVAPIDHSKQRRPFWASLLKKQSAQPNFKLQASMEKV
Ga0334913_079586_563_679	3300034172	Sub-Biocrust Soil	LGVAPIDESKQRRPFWAGLLKKQAAQPNFKLQTSMEKV
Ga0314785_021098_372_533	3300034479	Soil	SKIALEIRRVAQQISLGLAPIDEHKQRRPFWAGLLKKQAAQPNFKLQASMEKV
Ga0314780_047918_9_188	3300034659	Soil	VQAEPTSKIALEIRRIAQQMSLGVAPIDESKQRRPFWASLLKKQSAQPNFKLQTQMEKV
Ga0314793_103820_478_594	3300034668	Soil	LGIAPIDHSKQRRPFWASLLKKQSAQPNFKLQASMEKV
Ga0314794_040158_1_174	3300034669	Soil	AEPTSKIALEIRRIAQQMSLGVAPIDESKQRRPFWASLLKRQSAQPNFKLQTQMEKV
Ga0314798_045439_690_806	3300034673	Soil	LGVAPIDESKQRRPFWASLLKKQSAQPNFKLQASMEKV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086936

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences