Metagenome Family F087303

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087303
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	51 residues
Representative Sequence	MTIEEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQQKKDKNAPAKTARSS
Number of Associated Samples	40
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	51.82 %
% of genes near scaffold ends (potentially truncated)	32.73 %
% of genes from short scaffolds (< 2000 bps)	85.45 %
Associated GOLD sequencing projects	27
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (75.455 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean (58.182 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (99.091 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.62% β-sheet: 0.00% Coil/Unstructured: 49.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13884	Peptidase_S74	9.09
PF16778	Phage_tail_APC	1.82

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
All Organisms	root	All Organisms	24.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
Viruses	superkingdom	All Organisms → Viruses	12.73 %
cellular organisms	root	All Organisms → cellular organisms	11.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	8.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	3.64 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	1.82 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	3.64 %
unclassified DNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses	1.82 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1.82 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
Candidatus Pacearchaeota	clade	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota	3.64 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	1.82 %
unclassified dsDNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses	1.82 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	3.64 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1.82 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.82 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	3.64 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1.82 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.82 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	3.64 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1.82 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.82 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	3.64 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1.82 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.82 %
unclassified Cytophagales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.45 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.27 %
Candidatus Pacearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	3.64 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1.82 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.82 %
Cytophagales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001450\|JGI24006J15134_10030373	Not Available	2376	Open in IMG/M
3300001450\|JGI24006J15134_10238957	Not Available	529	Open in IMG/M
3300002511\|JGI25131J35506_1039136	Not Available	655	Open in IMG/M
3300002511\|JGI25131J35506_1064231	Not Available	511	Open in IMG/M
3300002760\|JGI25136J39404_1035882	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300006318\|Ga0068475_1125956	Not Available	792	Open in IMG/M
3300006726\|Ga0098070_108241	Not Available	543	Open in IMG/M
3300006736\|Ga0098033_1044573	Not Available	1313	Open in IMG/M
3300006736\|Ga0098033_1075103	Not Available	975	Open in IMG/M
3300006753\|Ga0098039_1324717	Not Available	513	Open in IMG/M
3300006753\|Ga0098039_1328266	Not Available	509	Open in IMG/M
3300006754\|Ga0098044_1212856	Not Available	757	Open in IMG/M
3300008216\|Ga0114898_1002254	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	10285	Open in IMG/M
3300008216\|Ga0114898_1008610	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	4107	Open in IMG/M
3300008216\|Ga0114898_1049576	All Organisms → cellular organisms → Bacteria	1342	Open in IMG/M
3300008216\|Ga0114898_1053951	All Organisms → Viruses → Predicted Viral	1275	Open in IMG/M
3300008216\|Ga0114898_1078647	Not Available	1010	Open in IMG/M
3300008216\|Ga0114898_1126081	Not Available	749	Open in IMG/M
3300008216\|Ga0114898_1226525	Not Available	509	Open in IMG/M
3300008217\|Ga0114899_1030689	Not Available	2009	Open in IMG/M
3300008217\|Ga0114899_1126535	Not Available	845	Open in IMG/M
3300008217\|Ga0114899_1157329	Not Available	736	Open in IMG/M
3300008218\|Ga0114904_1016564	Not Available	2243	Open in IMG/M
3300008218\|Ga0114904_1029923	Not Available	1521	Open in IMG/M
3300008218\|Ga0114904_1108016	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	673	Open in IMG/M
3300008218\|Ga0114904_1151205	Not Available	545	Open in IMG/M
3300008220\|Ga0114910_1041198	Not Available	1514	Open in IMG/M
3300008220\|Ga0114910_1102069	Not Available	853	Open in IMG/M
3300008220\|Ga0114910_1216862	Not Available	521	Open in IMG/M
3300009412\|Ga0114903_1032746	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300009412\|Ga0114903_1042867	Not Available	1080	Open in IMG/M
3300009414\|Ga0114909_1011415	All Organisms → cellular organisms → Bacteria	3157	Open in IMG/M
3300009418\|Ga0114908_1038399	All Organisms → Viruses → Predicted Viral	1774	Open in IMG/M
3300009418\|Ga0114908_1053560	Not Available	1441	Open in IMG/M
3300009418\|Ga0114908_1072005	Not Available	1195	Open in IMG/M
3300009418\|Ga0114908_1080009	Not Available	1118	Open in IMG/M
3300009418\|Ga0114908_1099165	Not Available	976	Open in IMG/M
3300009418\|Ga0114908_1107864	Not Available	925	Open in IMG/M
3300009602\|Ga0114900_1032596	Not Available	1732	Open in IMG/M
3300009602\|Ga0114900_1038978	Not Available	1528	Open in IMG/M
3300009602\|Ga0114900_1050728	Not Available	1275	Open in IMG/M
3300009602\|Ga0114900_1120155	Not Available	703	Open in IMG/M
3300009603\|Ga0114911_1026528	Not Available	1904	Open in IMG/M
3300009603\|Ga0114911_1042738	Not Available	1432	Open in IMG/M
3300009604\|Ga0114901_1239728	Not Available	510	Open in IMG/M
3300009605\|Ga0114906_1023520	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium	2509	Open in IMG/M
3300009605\|Ga0114906_1120966	Not Available	924	Open in IMG/M
3300009605\|Ga0114906_1175729	Not Available	727	Open in IMG/M
3300025122\|Ga0209434_1063123	Not Available	1117	Open in IMG/M
3300025125\|Ga0209644_1010686	All Organisms → Viruses → Predicted Viral	1910	Open in IMG/M
3300025125\|Ga0209644_1013861	All Organisms → Viruses → Predicted Viral	1708	Open in IMG/M
3300025125\|Ga0209644_1017406	Not Available	1541	Open in IMG/M
3300025125\|Ga0209644_1032630	Not Available	1164	Open in IMG/M
3300025125\|Ga0209644_1046564	Not Available	988	Open in IMG/M
3300025125\|Ga0209644_1060713	Not Available	873	Open in IMG/M
3300025125\|Ga0209644_1063492	Not Available	855	Open in IMG/M
3300025125\|Ga0209644_1087628	Not Available	732	Open in IMG/M
3300025125\|Ga0209644_1087689	Not Available	732	Open in IMG/M
3300025125\|Ga0209644_1107378	Not Available	661	Open in IMG/M
3300025125\|Ga0209644_1112379	Not Available	647	Open in IMG/M
3300025125\|Ga0209644_1112901	Not Available	645	Open in IMG/M
3300025125\|Ga0209644_1113050	Not Available	645	Open in IMG/M
3300025125\|Ga0209644_1122659	Not Available	619	Open in IMG/M
3300025125\|Ga0209644_1155026	Not Available	546	Open in IMG/M
3300025125\|Ga0209644_1176595	Not Available	508	Open in IMG/M
3300025138\|Ga0209634_1113829	All Organisms → Viruses → Predicted Viral	1168	Open in IMG/M
3300025168\|Ga0209337_1044861	All Organisms → Viruses → Predicted Viral	2333	Open in IMG/M
3300025251\|Ga0208182_1001764	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	9630	Open in IMG/M
3300025251\|Ga0208182_1003264	Not Available	6037	Open in IMG/M
3300025251\|Ga0208182_1073162	Not Available	659	Open in IMG/M
3300025251\|Ga0208182_1074577	Not Available	650	Open in IMG/M
3300025264\|Ga0208029_1010963	All Organisms → cellular organisms → Bacteria	2516	Open in IMG/M
3300025267\|Ga0208179_1012377	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	2652	Open in IMG/M
3300025270\|Ga0208813_1028849	Not Available	1323	Open in IMG/M
3300025270\|Ga0208813_1068283	Not Available	752	Open in IMG/M
3300025270\|Ga0208813_1075752	Not Available	701	Open in IMG/M
3300025274\|Ga0208183_1029497	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1188	Open in IMG/M
3300025277\|Ga0208180_1010972	All Organisms → Viruses → Predicted Viral	2982	Open in IMG/M
3300025277\|Ga0208180_1040359	Not Available	1256	Open in IMG/M
3300025277\|Ga0208180_1055221	All Organisms → Viruses → Predicted Viral	1003	Open in IMG/M
3300025280\|Ga0208449_1009664	All Organisms → cellular organisms → Bacteria	3475	Open in IMG/M
3300025280\|Ga0208449_1026648	Not Available	1747	Open in IMG/M
3300025280\|Ga0208449_1043750	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1234	Open in IMG/M
3300025280\|Ga0208449_1137460	Not Available	540	Open in IMG/M
3300025282\|Ga0208030_1019851	All Organisms → Viruses	2244	Open in IMG/M
3300025282\|Ga0208030_1058776	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1065	Open in IMG/M
3300025286\|Ga0208315_1029352	Not Available	1612	Open in IMG/M
3300025286\|Ga0208315_1113162	All Organisms → Viruses	633	Open in IMG/M
3300025296\|Ga0208316_1023462	Not Available	1539	Open in IMG/M
3300025300\|Ga0208181_1029840	Not Available	1234	Open in IMG/M
3300025300\|Ga0208181_1105397	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300025301\|Ga0208450_1032623	Not Available	1388	Open in IMG/M
3300025301\|Ga0208450_1061325	Not Available	896	Open in IMG/M
3300025301\|Ga0208450_1071647	Not Available	803	Open in IMG/M
3300025305\|Ga0208684_1033851	Not Available	1492	Open in IMG/M
3300025873\|Ga0209757_10034092	Not Available	1460	Open in IMG/M
3300025873\|Ga0209757_10094003	Not Available	913	Open in IMG/M
3300025873\|Ga0209757_10099459	Not Available	890	Open in IMG/M
3300025873\|Ga0209757_10141091	Not Available	752	Open in IMG/M
3300025873\|Ga0209757_10169598	Not Available	687	Open in IMG/M
3300025873\|Ga0209757_10206262	Not Available	623	Open in IMG/M
3300025873\|Ga0209757_10217494	Not Available	606	Open in IMG/M
3300025873\|Ga0209757_10225190	Not Available	595	Open in IMG/M
3300025873\|Ga0209757_10225501	Not Available	594	Open in IMG/M
3300025873\|Ga0209757_10233364	Not Available	584	Open in IMG/M
3300025873\|Ga0209757_10243773	Not Available	571	Open in IMG/M
3300028018\|Ga0256381_1001973	Not Available	2846	Open in IMG/M
3300028018\|Ga0256381_1011005	All Organisms → cellular organisms → Bacteria → Proteobacteria	1470	Open in IMG/M
3300028022\|Ga0256382_1015039	Not Available	1562	Open in IMG/M
3300032006\|Ga0310344_11469700	Not Available	557	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	97.27%
Pelagic	Environmental → Aquatic → Marine → Pelagic	2.73%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	96.36%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	2.73%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	0.91%

Habitat	Taxonomy	Distribution
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	58.18%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	37.27%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	2.73%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.91%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300002511	Marine viral communities from the Pacific Ocean - ETNP_2_1000	Environmental	Open in IMG/M
3300002760	Marine viral communities from the Pacific Ocean - ETNP_6_1000	Environmental	Open in IMG/M
3300006318	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0200m	Environmental	Open in IMG/M
3300006726	Marine viral communities from Cariaco Basin, Caribbean Sea - 28_WHOI_OMZ	Environmental	Open in IMG/M
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental	Open in IMG/M
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental	Open in IMG/M
3300006754	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG	Environmental	Open in IMG/M
3300008216	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar	Environmental	Open in IMG/M
3300008217	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215	Environmental	Open in IMG/M
3300008218	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6	Environmental	Open in IMG/M
3300008220	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908	Environmental	Open in IMG/M
3300009412	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2	Environmental	Open in IMG/M
3300009414	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906	Environmental	Open in IMG/M
3300009418	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17	Environmental	Open in IMG/M
3300009602	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231	Environmental	Open in IMG/M
3300009603	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904	Environmental	Open in IMG/M
3300009604	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16	Environmental	Open in IMG/M
3300009605	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9	Environmental	Open in IMG/M
3300025122	Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)	Environmental	Open in IMG/M
3300025125	Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)	Environmental	Open in IMG/M
3300025138	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)	Environmental	Open in IMG/M
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental	Open in IMG/M
3300025251	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)	Environmental	Open in IMG/M
3300025264	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)	Environmental	Open in IMG/M
3300025267	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)	Environmental	Open in IMG/M
3300025270	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes)	Environmental	Open in IMG/M
3300025274	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)	Environmental	Open in IMG/M
3300025277	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)	Environmental	Open in IMG/M
3300025280	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)	Environmental	Open in IMG/M
3300025282	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)	Environmental	Open in IMG/M
3300025286	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)	Environmental	Open in IMG/M
3300025296	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231 (SPAdes)	Environmental	Open in IMG/M
3300025300	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 (SPAdes)	Environmental	Open in IMG/M
3300025301	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 (SPAdes)	Environmental	Open in IMG/M
3300025305	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 (SPAdes)	Environmental	Open in IMG/M
3300025873	Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)	Environmental	Open in IMG/M
3300028018	Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m	Environmental	Open in IMG/M
3300028022	Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m	Environmental	Open in IMG/M
3300032006	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24006J15134_100303733	3300001450	Marine	MTIKEVNKIIQDLRQQIPQLQMQLHQAEGYYQALIDMQQKKDKDAPAKNPGSS*
JGI24006J15134_102389571	3300001450	Marine	MTIEEVEAIIQELRQKIPQLQVQLNQAEGYHQALTDMKKDKNAPAKNSRSS*
JGI25131J35506_10391361	3300002511	Marine	SKNKGMTIEEVEAIIQDLRQKIPTLQVQLNQAEGYYQALVDMQQKKDKDAPAKTTRSS*
JGI25131J35506_10642311	3300002511	Marine	MTIEEVQAIIEDLRQKIPQLQVQLNQAEGYHQALVDMQQKKDKDAPAKTARSS*
JGI25136J39404_10358822	3300002760	Marine	MTIEEVQAIIEDLRQKIPQLQVQLNQAEGYHQALIDMQQKKDKNAPSKTTRSS*
Ga0068475_11259562	3300006318	Marine	MTIEEVDNIIKDLRQKIPQLQTQLHQAEGYKQALVDMEDQKKEKKKDNA*
Ga0098070_1082412	3300006726	Marine	MTIEEVEAIIQDLRQKIPQLQMQLNQAEGYHQALIDMQAKDKKDATAKNTRSG*
Ga0098033_10445731	3300006736	Marine	MTIEEVQAIIDDLRKKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPAKTARSS*
Ga0098033_10751032	3300006736	Marine	MTLEEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQQKKDKDAPAKNTRSS*
Ga0098039_13247172	3300006753	Marine	MTIEEVEKIIQDLRQQIPQMQMQLHQAEGYHQALIDLQQKKDKDAPAKNTRSG*
Ga0098039_13282661	3300006753	Marine	MTIEEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQQKKDKDAP
Ga0098044_12128562	3300006754	Marine	MTIEEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQKDKKDAPAKNTRSS*
Ga0114898_10022549	3300008216	Deep Ocean	MTIEEVTAIIGDLRLKIPDLQRQLSQAEGYLQALMDMQNNKKDKNAPAKTARSS*
Ga0114898_10086102	3300008216	Deep Ocean	MTIEEVEAIIQDLRQKIPTLQVQLNQAEGYHQALIDMQKDKKDAPAKNTRSS*
Ga0114898_10495762	3300008216	Deep Ocean	MTIEEVETIIQDLRQKIPTLQVQLNQAEGYHQALVDMQQEKDKDAPAKTTRSS*
Ga0114898_10539515	3300008216	Deep Ocean	MTIEEVQAIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPSKTTRSG*
Ga0114898_10786471	3300008216	Deep Ocean	MTIEEVQAIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAP
Ga0114898_11260811	3300008216	Deep Ocean	IIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPAKTARSG*
Ga0114898_12265252	3300008216	Deep Ocean	MTIKEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQKDKKNAPAKNTRSG*
Ga0114899_10306891	3300008217	Deep Ocean	MTIEEVQAIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPSK
Ga0114899_11265351	3300008217	Deep Ocean	MTIEEVEAIIQDLRQKIPTLQVQLNQAEGYHQALID
Ga0114899_11573292	3300008217	Deep Ocean	MTLEEVEAIIQDLRQKIPQLQVQLNQAEGYHQALVDMQKDKKDAPAKNTRSS*
Ga0114904_10165642	3300008218	Deep Ocean	MTIAEVQTIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPAKTARSG*
Ga0114904_10299234	3300008218	Deep Ocean	MTIEEVTAIIGDLRLKIPDLQRQLSQAEGYLQALMDMQQEKDKDAPAKTTRSS*
Ga0114904_11080162	3300008218	Deep Ocean	MTIEEVQAIIEDLRQKIPQLQVQLNQAEGYHQALIDMQQKKDKDAPAKTARSS*
Ga0114904_11512052	3300008218	Deep Ocean	MTIEEVQAIIEDLRQKIPQLQMQLHQAEGYHQALTDMKKDKNAPSKTARSG*
Ga0114910_10411984	3300008220	Deep Ocean	MTIAEVQTIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPAK
Ga0114910_11020691	3300008220	Deep Ocean	MTIEEVETIIQDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKN
Ga0114910_12168622	3300008220	Deep Ocean	MTIEEVQAIIEDLRQKIPTLQVQLNQAEGYAQALIDMQQKKDKNAPPKTTRSG*
Ga0114903_10327462	3300009412	Deep Ocean	MTIEEVETIIQDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPSKTARSS*
Ga0114903_10428673	3300009412	Deep Ocean	MTIEEVQAIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPAK
Ga0114909_10114152	3300009414	Deep Ocean	MTIEEVETIIQDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPSKTTRSG*
Ga0114908_10383995	3300009418	Deep Ocean	MTIEEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQKDKKDAPA
Ga0114908_10535604	3300009418	Deep Ocean	MTIEEVEAIIQDLRQKIPTLQVQLNQAEGYHQALIDMQKKDK
Ga0114908_10720051	3300009418	Deep Ocean	MTIEEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQKDKKDAPAKNS
Ga0114908_10800093	3300009418	Deep Ocean	MTIAEVQAIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPAK
Ga0114908_10991651	3300009418	Deep Ocean	MTIEEVQAIIEDLRQKIPQLQVQLNQAEGYHQALVDMQQEKDKDAPSKTARSS*
Ga0114908_11078643	3300009418	Deep Ocean	MTIAEVQAIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQK
Ga0114900_10325962	3300009602	Deep Ocean	MTIEEVQAIIEDLRQKIPQLQVQLNQAEGYHQALVDMQQEKDKDAPAKTTRSS*
Ga0114900_10389781	3300009602	Deep Ocean	MTIEEVETIIQDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAP
Ga0114900_10507283	3300009602	Deep Ocean	MTLEEVEAVIQDLRQKIPQLQMQLHQAEGYHQALIDMQKDKKDALAKNTGSS*
Ga0114900_11201552	3300009602	Deep Ocean	MTIEEVEAIIQDLRQKIPQLQMQLHQAEGYHQALIDMQKDKKDAPAKNSRSS*
Ga0114911_10265282	3300009603	Deep Ocean	MTIEEVETIIQDLRQKIPQLQVQLNQAEGYHQALVDLQPKKDKNAPSKTARSS*
Ga0114911_10427382	3300009603	Deep Ocean	MTIEEVEAIIKDLRQKIPQLQVQLNQAEGYHQALIDMNQKKDKNAPSKTTRSS*
Ga0114901_12397282	3300009604	Deep Ocean	MTIEEVQAIIEDLRQKTPQLQMQLHQAEGYHQALTDMQQKKDKNAPAKTARSG*
Ga0114906_10235202	3300009605	Deep Ocean	MTIKEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQKDKKNAPAKNSRSG*
Ga0114906_11209663	3300009605	Deep Ocean	MTIEEVQAIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPAKTTRSG*
Ga0114906_11757291	3300009605	Deep Ocean	MTLEEVEAIIKDLRQKIPQLQVQLNQAEGYHQALIDMQAKDKKDAPAKNSRSG*
Ga0209434_10631232	3300025122	Marine	MTIEEVQAIIEDLRQKIPQLQVQLNQAEGYHQALIDMQQKKDKNAPAKTARSS
Ga0209644_10106864	3300025125	Marine	MTIEEVQAIIEDLRQKIPQLQVQLNQAEGYAQALIDMQQKKDKDAPAKTARSS
Ga0209644_10138612	3300025125	Marine	MMTIEEVQAIIEDLRQKIPTLQVQLNQAEGYAQALVDMQQKKDKNAPAKTARSS
Ga0209644_10174062	3300025125	Marine	MTIEEVQAIIEDLRQKIPQLQVQLNQAEGYHQALVDMQQKKDKDAPAKTTRSS
Ga0209644_10326302	3300025125	Marine	MTIEEVQAIIEDLRQKIPQLQVQLNQAEGYHQALIDMQSKKDKDAPAKTARSS
Ga0209644_10465642	3300025125	Marine	MTIEEVEAIIQDLRQKIPQLQMQLHQAEGYLQALTDMEKKEKSGSSKTARSS
Ga0209644_10607133	3300025125	Marine	MTIEEVQAIIEDLRQKIPQLQVQLNQAEGYHQALVDMQQKKDKDAPAKTARSS
Ga0209644_10634922	3300025125	Marine	MTIEEIEAIILDLRQKIPQLQIQLNQAEGYHQALVDMQQKKDKKDGTSKAARSS
Ga0209644_10876283	3300025125	Marine	MTIEEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQQKKEKSGSPKTTRSS
Ga0209644_10876891	3300025125	Marine	VQAIIEDLRQKIPQLQVQLNQAEGYHQALIDMQQKKDKNAPAKTARSS
Ga0209644_11073782	3300025125	Marine	MTIEEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQQKKDKNAPAKTARSS
Ga0209644_11123791	3300025125	Marine	IEEVEAIIQDLRHKIPQLQVQLNQAEGYHQALVDMQQKKDKNAPAKTARSS
Ga0209644_11129012	3300025125	Marine	RNSNRMTIEEVEAIIQDLRQKIPTLQVQLNQAEGYHQALVDMQQKKDKDAPAKTTRTS
Ga0209644_11130502	3300025125	Marine	MTIEEVQAIIEDLRQKIPQLQVQLNQAEGYHQALIDMQQKKDKNAPSKTTRSS
Ga0209644_11226592	3300025125	Marine	MTIEEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQQKKDKDAPPKTARSS
Ga0209644_11550261	3300025125	Marine	MTIEEVEAIIQDLRQKIPQLQVQLNQAEGYHQALTDM
Ga0209644_11765952	3300025125	Marine	MTISEVEAIIQDLRQKIPTLQVQLNQAEGYYQALVDMQQKKDKDAPAKTTRSS
Ga0209634_11138292	3300025138	Marine	MTIEEVEAIIQELRQKIPQLQVQLNQAEGYHQALTDMKKDKNAPAKNSRSS
Ga0209337_10448614	3300025168	Marine	MTLEEIDKIITDLRQQIPNMQMQLHQAEGYHQALIDMQQKKDKDAPAKNSGSS
Ga0208182_10017645	3300025251	Deep Ocean	MTIEEVQAIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPSKTTRSG
Ga0208182_10032649	3300025251	Deep Ocean	MTIEEVTAIIGDLRLKIPDLQRQLSQAEGYLQALMDMQNNKKDKNAPAKTARSS
Ga0208182_10731621	3300025251	Deep Ocean	EVEAIIQDLRQKIPQLQVQLNQAEGYHQALVDMQKDKKDAPAKNTRSS
Ga0208182_10745771	3300025251	Deep Ocean	TSGMTIEEVQAIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPSKTTRSG
Ga0208029_10109632	3300025264	Deep Ocean	MTIEEVETIIQDLRQKIPTLQVQLNQAEGYHQALVDMQQEKDKDAPAKTTRSS
Ga0208179_10123772	3300025267	Deep Ocean	MTIEEVEAIIQDLRQKIPTLQVQLNQAEGYHQALIDMQKDKKDAPAKNTRSS
Ga0208813_10288492	3300025270	Deep Ocean	VQTIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPAKTARSG
Ga0208813_10682832	3300025270	Deep Ocean	MTLEEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQKDKKDAPAKNSRSS
Ga0208813_10757522	3300025270	Deep Ocean	MTIEEVEAIIKDLRQKIPQLQVQLNQAEGYHQALIDMNQKKDKNAPSKTTRSS
Ga0208183_10294972	3300025274	Deep Ocean	MTIEEVQAIIEDLRQKIPQLQVQLNQAEGYHQALIDMQQKKDKDAPAKTARSS
Ga0208180_10109724	3300025277	Deep Ocean	MTIAEVQTIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPAKTARSG
Ga0208180_10403595	3300025277	Deep Ocean	MTIEEVETIIQDLRQKIPQLQVQLNQAEGYHQALVDMQ
Ga0208180_10552214	3300025277	Deep Ocean	MTIEEVQAIIEDLRQKIPQLQMQLHQAEGYHQALT
Ga0208449_10096642	3300025280	Deep Ocean	MTIEEVETIIQDLRQKIPQLQVQLNQAEGYHQALVDMQQEKDKDAPSKTARSS
Ga0208449_10266483	3300025280	Deep Ocean	MTIEEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQKDKKDAPAKNSRSG
Ga0208449_10437502	3300025280	Deep Ocean	MTIEEIEAIIKDLRQKIPQLQVQLNQAEGYHQALIDMNQKKDKNAPSKTTRSS
Ga0208449_11374602	3300025280	Deep Ocean	MTIEEVQAIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPAKTTRTG
Ga0208030_10198515	3300025282	Deep Ocean	MTIKEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQKDKKNAPAKNSRSG
Ga0208030_10587762	3300025282	Deep Ocean	MTIEEIEAIIKDLRQKIPQLQVQLNQAEGYHQALIDMNQKKDKNAPSETTRSS
Ga0208315_10293525	3300025286	Deep Ocean	MTIEEVQAIIEDLRQKIPQLQVQLNQAEGYHQALVDMQQEKDKDAPAKTTRSS
Ga0208315_11131622	3300025286	Deep Ocean	MTIKEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQKDKKNAPAKNTRSG
Ga0208316_10234622	3300025296	Deep Ocean	MTIAEVQAIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPAKTARSG
Ga0208181_10298401	3300025300	Deep Ocean	MTIEEVTAIIGDLRLKIPDLQRQLSQAEGYLQALMDMQNNKKDK
Ga0208181_11053971	3300025300	Deep Ocean	MTIKEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQKDKKDAPAKNSRS
Ga0208450_10326232	3300025301	Deep Ocean	IAEVQTIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPAKTARSG
Ga0208450_10613251	3300025301	Deep Ocean	MTIEEVQAIIEDLRQKIPQLQMQLHQAEGYHQALTDMQQKKDKNAPAKTAR
Ga0208450_10716472	3300025301	Deep Ocean	EEVEAIIQDLRQKIPQLQVQLNQAEGYHQALVDMQKDKKDAPAKNTRSS
Ga0208684_10338514	3300025305	Deep Ocean	MTIEEVQAIIEDLRQKIPQLQVQLNQAEGYHQALVDMQQEKDKDAPSKTARSS
Ga0209757_100340923	3300025873	Marine	MTIEEVQAIIEDLRQKIPQLQVQLNQAEGYHQALVDMQQKKDKDAPAKTTRTS
Ga0209757_100940031	3300025873	Marine	MTIEEVQAIIQDLRQKIPQLQVQLNQAEGYHQALVDMQKKEKNAPSKTTRSS
Ga0209757_100994591	3300025873	Marine	MTIEEVEAIIQDLRQKIPQLQVQLNQAEGYHQALVDMQKK
Ga0209757_101410911	3300025873	Marine	TRRMTIEEVQAIIEDLRQKIPQLQVQLNQAEGYHQALIDMQQKKDKNAPPKTTRSS
Ga0209757_101695983	3300025873	Marine	MTIEEVEAIIQDLRQKIPQFQIQLNQAEGYHQALIDLQQKKDKNAP
Ga0209757_102062623	3300025873	Marine	MTIEEVQAIIEDLRQKIPQLQVQLNQAEGYHQALIDMQSKKDKDAPAKTARS
Ga0209757_102174942	3300025873	Marine	MTIEEVDAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQKKDKNAPTKNTGSG
Ga0209757_102251902	3300025873	Marine	MTIEEVQAIIEDLRQKIPTLQVQLNQAEGYHQALVDMQQKKDKDAPAKTARSS
Ga0209757_102255011	3300025873	Marine	MTIEEVQAIIEDLRQKIPTLQVQLNQAEGYHQALVDMQQKKDKNAPAKTARSS
Ga0209757_102333641	3300025873	Marine	MTIEEVQAIIEDLRQKIPQLQMQLNQAEGYHQALIDMQQKKDKNAPAKTARSS
Ga0209757_102437733	3300025873	Marine	MTIEEVQAIIQDLRQKIPTLQVQLNQAEGYHQALVDMQKKEK
Ga0256381_10019732	3300028018	Seawater	MTIEEVEAIIQDLRQKIPQLQVQLNQAEGYAQALVDMQQKKDKNAPAKTTRTS
Ga0256381_10110055	3300028018	Seawater	MTIEEVQAIIEDLRQKIPQLQMQLHQAEGYHQALTDMEKKDKNAPAKTARSS
Ga0256382_10150393	3300028022	Seawater	MTLEEVEAIIQDLRQKIPQLQVQLNQAEGYHQALIDMQKDKKDVPAKNTRSG
Ga0310344_114697002	3300032006	Seawater	MTIEEVDNIIKDLRQKIPQLQTQLHQAEGYKQALVDMEDQKKEKKKDNT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087303

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences