Metagenome / Metatranscriptome Family F087459

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087459
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	59 residues
Representative Sequence	MVGVGEFEQFDGRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFKRDVRNLPD
Number of Associated Samples	86
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	92.59 %
% of genes near scaffold ends (potentially truncated)	97.27 %
% of genes from short scaffolds (< 2000 bps)	84.55 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (95.455 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (26.364 % of family members)
Environment Ontology (ENVO)	Unclassified (26.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.273 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.43% β-sheet: 16.07% Coil/Unstructured: 62.50%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01872	RibD_C	2.73
PF07883	Cupin_2	2.73
PF03401	TctC	1.82
PF03551	PadR	1.82
PF14319	Zn_Tnp_IS91	1.82
PF01625	PMSR	1.82
PF13561	adh_short_C2	0.91
PF03403	PAF-AH_p_II	0.91
PF13432	TPR_16	0.91
PF01042	Ribonuc_L-PSP	0.91
PF13620	CarboxypepD_reg	0.91
PF01609	DDE_Tnp_1	0.91
PF02954	HTH_8	0.91
PF02195	ParBc	0.91
PF01161	PBP	0.91
PF12543	DUF3738	0.91
PF01726	LexA_DNA_bind	0.91
PF16859	TetR_C_11	0.91
PF06170	DUF983	0.91
PF01878	EVE	0.91
PF02416	TatA_B_E	0.91
PF13188	PAS_8	0.91
PF11199	DUF2891	0.91
PF00326	Peptidase_S9	0.91
PF07519	Tannase	0.91
PF13495	Phage_int_SAM_4	0.91
PF00745	GlutR_dimer	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	2.73
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	2.73
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	1.82
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.82
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.82
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.82
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.82
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.91
COG0373	Glutamyl-tRNA reductase	Coenzyme transport and metabolism [H]	0.91
COG1673	Predicted RNA-binding protein, contains PUA-like EVE domain	General function prediction only [R]	0.91
COG1826	Twin-arginine protein secretion pathway components TatA and TatB	Intracellular trafficking, secretion, and vesicular transport [U]	0.91
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	0.91
COG2947	Predicted RNA-binding protein, contains EVE domain	General function prediction only [R]	0.91
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.91
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.91
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.91
COG4188	Predicted dienelactone hydrolase	General function prediction only [R]	0.91
COG5349	Uncharacterized conserved protein, DUF983 family	Function unknown [S]	0.91
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.91
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.91
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.45 %
Unclassified	root	N/A	4.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.45 %
Unclassified	root	N/A	4.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.45 %
Unclassified	root	N/A	4.55 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	21.82 %
Unclassified	root	N/A	4.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.64 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.91 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	9.09 %
Unclassified	root	N/A	4.55 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.64 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.82 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	6.36 %
Unclassified	root	N/A	4.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.64 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	1.82 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.91 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.36 %
Unclassified	root	N/A	4.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.64 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	1.82 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.91 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.91 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.36 %
Unclassified	root	N/A	4.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.64 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	1.82 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.91 %
Massilia group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group	0.91 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.36 %
Unclassified	root	N/A	4.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.64 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1.82 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.91 %
Massilia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia	0.91 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.36 %
Unclassified	root	N/A	4.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.64 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1.82 %
unclassified Massilia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → unclassified Massilia	0.91 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.91 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.36 %
Unclassified	root	N/A	4.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.64 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1.82 %
Massilia sp. Root335	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → unclassified Massilia → Massilia sp. Root335	0.91 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.91 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001546\|JGI12659J15293_10107701	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300002245\|JGIcombinedJ26739_100017214	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6109	Open in IMG/M
3300002245\|JGIcombinedJ26739_100264616	All Organisms → cellular organisms → Bacteria	1606	Open in IMG/M
3300002245\|JGIcombinedJ26739_101354952	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300004598\|Ga0068975_1229004	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300005537\|Ga0070730_10441028	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300005539\|Ga0068853_102133483	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300005602\|Ga0070762_10003119	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7914	Open in IMG/M
3300005602\|Ga0070762_10121132	All Organisms → cellular organisms → Bacteria	1537	Open in IMG/M
3300005602\|Ga0070762_10188279	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300005602\|Ga0070762_10689568	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	684	Open in IMG/M
3300005712\|Ga0070764_11055846	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	513	Open in IMG/M
3300006176\|Ga0070765_102302915	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300009633\|Ga0116129_1086069	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	920	Open in IMG/M
3300010379\|Ga0136449_100946436	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1395	Open in IMG/M
3300014169\|Ga0181531_10416016	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300014654\|Ga0181525_10452879	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300014655\|Ga0181516_10696120	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300016270\|Ga0182036_11631045	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300016319\|Ga0182033_10688251	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300017927\|Ga0187824_10313860	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300017940\|Ga0187853_10061551	All Organisms → cellular organisms → Bacteria → Acidobacteria	1904	Open in IMG/M
3300017975\|Ga0187782_10707842	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300017975\|Ga0187782_11337337	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300018025\|Ga0187885_10060796	All Organisms → cellular organisms → Bacteria → Acidobacteria	1911	Open in IMG/M
3300018030\|Ga0187869_10337566	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300018033\|Ga0187867_10506474	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300018034\|Ga0187863_10044401	All Organisms → cellular organisms → Bacteria	2562	Open in IMG/M
3300018037\|Ga0187883_10018933	All Organisms → cellular organisms → Bacteria	3812	Open in IMG/M
3300018037\|Ga0187883_10439987	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300018038\|Ga0187855_10593973	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300018042\|Ga0187871_10520935	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300018043\|Ga0187887_10044005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	2763	Open in IMG/M
3300018057\|Ga0187858_10881549	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300018062\|Ga0187784_10729240	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	792	Open in IMG/M
3300018062\|Ga0187784_10893694	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300018088\|Ga0187771_11018796	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300018088\|Ga0187771_11286467	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300018090\|Ga0187770_11808628	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300019284\|Ga0187797_1443530	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300020579\|Ga0210407_10492284	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300020580\|Ga0210403_10740330	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300021168\|Ga0210406_10577352	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300021181\|Ga0210388_10016962	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5853	Open in IMG/M
3300021407\|Ga0210383_10342118	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1289	Open in IMG/M
3300021407\|Ga0210383_10633386	All Organisms → cellular organisms → Bacteria → Acidobacteria	921	Open in IMG/M
3300021420\|Ga0210394_11829752	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300021433\|Ga0210391_10926378	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300022521\|Ga0224541_1020631	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300023030\|Ga0224561_1018030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → unclassified Massilia → Massilia sp. Root335	599	Open in IMG/M
3300025414\|Ga0208935_1060400	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300027064\|Ga0208724_1021094	All Organisms → cellular organisms → Bacteria → Acidobacteria	653	Open in IMG/M
3300027576\|Ga0209003_1029656	Not Available	923	Open in IMG/M
3300027609\|Ga0209221_1040801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1235	Open in IMG/M
3300027648\|Ga0209420_1061777	All Organisms → cellular organisms → Bacteria → Acidobacteria	1106	Open in IMG/M
3300027648\|Ga0209420_1122758	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300027676\|Ga0209333_1029340	All Organisms → cellular organisms → Bacteria → Acidobacteria	1540	Open in IMG/M
3300027737\|Ga0209038_10198037	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300027783\|Ga0209448_10109309	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300027783\|Ga0209448_10229291	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300027855\|Ga0209693_10048250	All Organisms → cellular organisms → Bacteria → Proteobacteria	2092	Open in IMG/M
3300027879\|Ga0209169_10034707	All Organisms → cellular organisms → Bacteria	2664	Open in IMG/M
3300027895\|Ga0209624_10429063	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300028748\|Ga0302156_10187001	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300028866\|Ga0302278_10148768	All Organisms → cellular organisms → Bacteria	1224	Open in IMG/M
3300028882\|Ga0302154_10614596	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300029907\|Ga0311329_10814269	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	594	Open in IMG/M
3300029910\|Ga0311369_10406748	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300029910\|Ga0311369_11073900	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300029943\|Ga0311340_10122495	All Organisms → cellular organisms → Bacteria	2800	Open in IMG/M
3300029943\|Ga0311340_10278206	Not Available	1612	Open in IMG/M
3300029944\|Ga0311352_10336914	All Organisms → cellular organisms → Bacteria	1248	Open in IMG/M
3300029952\|Ga0311346_10128470	All Organisms → cellular organisms → Bacteria	3104	Open in IMG/M
3300029954\|Ga0311331_11525834	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300029955\|Ga0311342_10147869	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	2373	Open in IMG/M
3300029999\|Ga0311339_11633968	All Organisms → cellular organisms → Bacteria → Acidobacteria	567	Open in IMG/M
3300029999\|Ga0311339_11836904	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300030043\|Ga0302306_10364320	All Organisms → cellular organisms → Bacteria → Acidobacteria	553	Open in IMG/M
3300030053\|Ga0302177_10262570	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300030058\|Ga0302179_10545510	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300030399\|Ga0311353_10112950	All Organisms → cellular organisms → Bacteria	2629	Open in IMG/M
3300030503\|Ga0311370_10043818	All Organisms → cellular organisms → Bacteria	6649	Open in IMG/M
3300030503\|Ga0311370_12081536	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300030503\|Ga0311370_12393266	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300030506\|Ga0302194_10334667	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300030519\|Ga0302193_10093855	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1838	Open in IMG/M
3300030524\|Ga0311357_10750217	Not Available	881	Open in IMG/M
3300030524\|Ga0311357_11844783	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300030617\|Ga0311356_12025419	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300030618\|Ga0311354_10737768	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	937	Open in IMG/M
3300030618\|Ga0311354_10738429	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300030646\|Ga0302316_10040800	All Organisms → cellular organisms → Bacteria	2146	Open in IMG/M
3300030693\|Ga0302313_10094401	All Organisms → cellular organisms → Bacteria	1249	Open in IMG/M
3300031231\|Ga0170824_105703978	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300031231\|Ga0170824_119226437	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300031234\|Ga0302325_11471216	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	880	Open in IMG/M
3300031236\|Ga0302324_100278649	All Organisms → cellular organisms → Bacteria	2583	Open in IMG/M
3300031236\|Ga0302324_102909937	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300031236\|Ga0302324_103530395	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300031474\|Ga0170818_105544862	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300031525\|Ga0302326_11157996	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300031525\|Ga0302326_11452613	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300031525\|Ga0302326_12002828	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300031708\|Ga0310686_103200242	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300031823\|Ga0307478_11576754	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300031902\|Ga0302322_100930147	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300032515\|Ga0348332_14308094	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300032898\|Ga0335072_11668972	All Organisms → cellular organisms → Bacteria → Acidobacteria	533	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.09%
Host-Associated	Host-Associated	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.00%
Aquatic	Environmental → Aquatic	19.09%
Plants	Host-Associated → Plants	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.73%
Peat	Environmental → Terrestrial → Peat	36.36%
Freshwater	Environmental → Aquatic → Freshwater	19.09%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	36.36%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	19.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	17.27%
Loam	Environmental → Terrestrial → Soil → Loam	17.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.18%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	36.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.27%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	16.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.55%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	26.36%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	10.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.00%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	8.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.27%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.27%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.36%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.64%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.73%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.82%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.91%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.91%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.91%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004598	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 72 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014655	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300022521	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24	Environmental	Open in IMG/M
3300023030	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2	Environmental	Open in IMG/M
3300025414	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)	Environmental	Open in IMG/M
3300027064	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030506	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_1	Environmental	Open in IMG/M
3300030519	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030646	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_2	Environmental	Open in IMG/M
3300030693	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12659J15293_101077011	3300001546	Forest Soil	MVGVGEFEEFDGRAVFDYERDADAVGWTVGRNQDFAASKLGGEISHFKRDVRNLPDE
JGIcombinedJ26739_1000172146	3300002245	Forest Soil	MVGVGEFEQFDGRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFKR
JGIcombinedJ26739_1002646163	3300002245	Forest Soil	MVGVGEFDQFDGRAVFDNERDADAVGRAVGRNQDFAASKLGGEISHFKRDVRNL
JGIcombinedJ26739_1013549521	3300002245	Forest Soil	MVGVGEFEEFDGRAVFDYERDADAVGWTVGRNQDFAASKLGGEISHFKRDVRNLPDEI
Ga0068975_12290042	3300004598	Peatlands Soil	MVGVGEFEQFDGRAVFDYERDADAVGWAVRRNQDFAASKLGGEISHFERDVRNL
Ga0070730_104410281	3300005537	Surface Soil	LYQHLGPLAAARVVGVGEFEQFDGRAVFDYERDAEALGWAVRRNQDFAASKLGGEISHFKSDVRNVPDQVRDR
Ga0068853_1021334832	3300005539	Corn Rhizosphere	MVGVGEFEQFDGRAVFNYERDTDAVRWAVGRNQDFAASKLIGEISHFERDVR
Ga0070762_1000311910	3300005602	Soil	MVGVGEFEQLDGCAVFDDERDADAVGWAVGRNQDFAAGKLGGEISHFK
Ga0070762_101211325	3300005602	Soil	VVGVGEFEQFNGRAVFNYKRDTGAVGWAVRRNQDFAASQLGGEISHFKRDVRNLPDEI
Ga0070762_101882794	3300005602	Soil	MVGVGEFEQFDGRAVFDYEGDAHAVGWAVGRNQDFAASKLGGEISHFKRDVRNLPDE
Ga0070762_106895683	3300005602	Soil	MVGVGEFEQFDGRAVFDYERDADAVGWAVRRNQDFAASQLGGEISHFKRDVRN
Ga0070764_110558461	3300005712	Soil	MVGVCEFEQFDGRAVFDYERDADAVGWAVRRNQDFAASKLGGEISHFKRDVRNLPDEIRDRRVRFE
Ga0070765_1023029151	3300006176	Soil	VVGVGEFEQFDGRAVFDYERDAHAVGWAVRRNQDFAASKLGGEISHFKRDVRN
Ga0116129_10860692	3300009633	Peatland	MVGVGEFEQFDRRAVFDYERDADAVGWAVGRNQDFTASKLGGEISHFKRDVRNLPDE
Ga0136449_1009464362	3300010379	Peatlands Soil	VVGVGELEQFDGRAVFDYERDADTVGWAVRRNQDFAASKLGGEISHFKRDVRNVPDEI
Ga0181531_104160161	3300014169	Bog	MVGVGEFEQFDRRAVFDYERDADAVGWAVGRNKDFAPSKLGDEISHFKRDVRNLPDE
Ga0181537_101944142	3300014201	Bog	LDGGFLYHHLALLAAGRMVRVGKFEQFDGRAVFDDERDADAVGWAVGRDQDFAASKLGGEISHFKRDAWNSPDEIRESSAVLADFFTSSGP*
Ga0181525_104528791	3300014654	Bog	MVRVGKFEQFDGRAVFDDERDADAVGWAVGRDQDFAASKLGGEISHFKRDAWNSPDEIRESSAVLADFFTSSGP*
Ga0181516_106961201	3300014655	Bog	MLAAARMVGVGEFEQFDGSAVFDYKRDADAVGWAVGRNQDFAARKLGGEIGHSKRNVRNLPDETGDRRVRFE
Ga0182036_116310452	3300016270	Soil	MLGVCEFEQFDRRAILDDERDADTVGWAVRRNQDFAAGKLGGEVGHFK
Ga0182033_106882511	3300016319	Soil	MFGVGEFEQFDGRAILDNERDADTVGWAVRRNQDFAASKLGGKVAHFKRDV
Ga0187824_103138601	3300017927	Freshwater Sediment	VVGVGEFEQFDGRAVFDYERDADAVGWAVRRNQDFAARKLGGEISHFKRDVRNVPD
Ga0187853_100615514	3300017940	Peatland	MVGVGEFEQFDRRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFKRDVR
Ga0187782_107078422	3300017975	Tropical Peatland	MFGVCEFEQFDGCAILDDERDTDTFGWAIRRNQDFAACKLGGEVGHFKRDVRHSPDEIG
Ga0187782_113373372	3300017975	Tropical Peatland	VFGVGELEQFDGRAIFDDERHVDTVGWAVRRNQDFAASKLGGEIGHFERLERRSPD
Ga0187885_100607964	3300018025	Peatland	MVGVGEFEQFDRRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFKRDVRNL
Ga0187869_103375662	3300018030	Peatland	MVGVGEFEQFDGRAVFDGKRDADAVGWAVGRNQDFAASKLGGEIRHFKRDVRNLPDEIRD
Ga0187867_105064741	3300018033	Peatland	MVGVGEFEHFDGRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHF
Ga0187863_100444014	3300018034	Peatland	MVGVGEFEQFDGRAVFDDERDADAVGWAVGRNQDFAASQLGGEISHFKRDVRNLPD
Ga0187883_100189336	3300018037	Peatland	MVGVGEFEQFDGRAVFDDERDADAGGWAVGRNQDFAASQLGGEISHFKRDVRNLPDEIR
Ga0187883_104399871	3300018037	Peatland	MVGVGEFEHFDGRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFK
Ga0187855_105939731	3300018038	Peatland	VVGVGEFEQFDGRAVFDDESDADAVGWAVRSNQDFAASKLGGEIIHFKRDVRN
Ga0187871_105209351	3300018042	Peatland	MVGVGEFEQLDGRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFK
Ga0187887_100440055	3300018043	Peatland	MVGVGEFEQFNGRAVFDDERDADAVGWAVGRNQDFAASKLGGEISHFKRDVRNLPDEI
Ga0187858_108815491	3300018057	Peatland	MVGVGEFEQLDGRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHF
Ga0187784_107292401	3300018062	Tropical Peatland	MGGVFDRLEAGWVFGVGEFEQFDGRAIFDDEREADTVGWAVRRNQDFAASKLGGEVGHFK
Ga0187784_108936942	3300018062	Tropical Peatland	LVAGWVFGVGEFEQFDGRAIFDNERDADTVGWAVRRNQDLAASKLGGEVGHFKRDVR
Ga0187771_110187961	3300018088	Tropical Peatland	LVAGWVFGIGEFEQFDRGAIFDDERDADTVGRAVRRNQDVAASKLGGEVGHFKRDVRHSPDEIGNRRVR
Ga0187771_112864671	3300018088	Tropical Peatland	VFGVGEFQQFDGRAIFDDERHADTVGWAVRRNQDFAASKLGGEVGHFKRDVRHSPDEI
Ga0187770_118086281	3300018090	Tropical Peatland	LVAGWVFGVGEFEQLDGRAIFDDERDADTVGWAVRRNQDFAASKLGGEVGHLKRDVRHSP
Ga0187797_14435302	3300019284	Peatland	LVAGWVFGVGEFEQFDGRAIFDDERDADTVGWAVRRNQDFAASKLGGEVGHFK
Ga0210407_104922841	3300020579	Soil	MVGVGELEQFDGRAVFDYERYADAVGWAVGRNQDFAASKLGGEISHFKRDVGNLPDEIWDRRVRFETHPL
Ga0210403_107403301	3300020580	Soil	VVGVGEFEQFDGRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFKRDVRNLPDEIRDRRVRFETH
Ga0210406_105773522	3300021168	Soil	MVGVGEFEQFDGRAVFDYERNADAVGWAVGRNQDFAASKLGGEISHFKRNVRNLPDEIRDRRVRFKTHPLH
Ga0210388_100169628	3300021181	Soil	MIGVGEFEQFDGRAVFDYERDADAVGWAVGRNQDFAASKLRGEISDFKRDVRNLPDTSGTAASASK
Ga0210383_103421183	3300021407	Soil	MVGVGEFEQFDGRAVFDYERNADAVGWAVGRNQDFAASKLGGEISH
Ga0210383_106333862	3300021407	Soil	MVGVGEFEQFDGRAVFDYERDADAVGGAVGRNQDFAAGKLGGEISHFKRDVRNLP
Ga0210394_118297521	3300021420	Soil	MVGVGEFEQFDGRAVFDYERDADAVGGAVGRNQDFAAGKLGGEISHFKRDVRNLPDEIRDRRVRF
Ga0210391_109263782	3300021433	Soil	MVGVGEFEQFNGSAVFDDERDPDAVGWAVGRNQDFAASKLRGEIIHLKRD
Ga0224541_10206311	3300022521	Soil	MVGVGEFEQLDGRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFKRDVRNLPDEIRDRRVRFET
Ga0224561_10180302	3300023030	Soil	MIRHKTDVPLAAARMVGVGEFEQFDGRAVFDYERDADAVGWAVGRNQDFAASKLEGEISHFKRDVRNLPDEIRDREI
Ga0208935_10604002	3300025414	Peatland	MVGVGEFEQFDGRAVFDDERDADAVGWAVGRNQDFAASKLGGEISHFKRDVR
Ga0208724_10210942	3300027064	Forest Soil	MVGVGEFEQLDGRAVFDDERDADAVGWAVGRNQDFAAGKLGGEISHFKCDVRNLPD
Ga0209003_10296561	3300027576	Forest Soil	MVGIGEFEQFDGRAIFDYERDADAVGWAIGRNQDFAASKLGGEIIHFKRDVRNLP
Ga0209221_10408012	3300027609	Forest Soil	MVEVGELEQFNGRAVFDDERDADAVGWAVGRNQDFAASKLGGEISHFKRDVRNSPDEIRDRR
Ga0209420_10617771	3300027648	Forest Soil	MVGVGEFEQFNGRSVFDDERDADAVGWAVGRNQDFAASKLGGEISHFKRDVRNLPDEIRD
Ga0209420_11227582	3300027648	Forest Soil	MVGVGEFEQFDGRAVFDDERDADAVGWAVRRNQDFAASKLGGEISHFKRDVGNLPDEI
Ga0209333_10293401	3300027676	Forest Soil	MVGVGEFEQFDGRAVFNYERDADAVGWAVGRHQDFAASKLGGEISHFKRDVRNLPDEIRDRRVR
Ga0209038_101980371	3300027737	Bog Forest Soil	LYQHLALLAAARVVGVGEFEQFDGRAVLDYERDADAVGWAVRRNQDFAASKLGGEISHFKRDVRNVP
Ga0209448_101093091	3300027783	Bog Forest Soil	MVGVGEFEQFDGRAVFRNECDAHAVGWAVGRNQDFAASKLGGEISHFKRDVRNLPDEIRDRRVRFE
Ga0209448_102292911	3300027783	Bog Forest Soil	MVGVGEFEQFDGRAVFDYERDADAVGWAVGRNQNFAASKLGGEISHFKRDVRNLPDEIRDRRVRFE
Ga0209693_100482503	3300027855	Soil	MVGVGQFEQFDGRAVFAYERDADAVGWAVGRNQDFAAGKLGGEISHFKRD
Ga0209169_100347074	3300027879	Soil	LYQHLALLAAARVVGVGEFEQFDGRAVFDYERDADAVGWAVRRNQDFAASKLGGEISHFKRDVRNVPDE
Ga0209624_104290632	3300027895	Forest Soil	VVGVGEFEQFDGRAVFDYERDADAVGWAVRRNQDFAASKLGGEISHFKRDVRNLPDEIR
Ga0302156_101870012	3300028748	Bog	MFSARLLAAARMVGVGEFEQFDGCAVFDYERDADALGWAVGRNQDFAASKLGGEISHFKRDVRNLPDE
Ga0302278_101487683	3300028866	Bog	MVGVGEFEQFNGRAVFDDERDADAVGWAVGRNQDFAASKLGGEISHFKRD
Ga0302154_106145961	3300028882	Bog	MFSARLLAAARMVGVGEFEQFDGCAVFDYERDADALGWAVGRNQDFAASKLGGEISHFKRDVRNLPDETRDRRVRFE
Ga0311329_108142692	3300029907	Bog	MVGVGEFEQFNGRAVFDDERDADALGWAVRRNQDFAASQLGGEIRHFKRDVRNLPDEIRDRRVRVETH
Ga0311369_104067483	3300029910	Palsa	MELSSLAALPAAARMVGVGEFEQFDGRAVFDYERDADAVGWPVGRNQDFAASKLGGEISHFKRDVRNLPDE
Ga0311369_110739001	3300029910	Palsa	MVGVGEFEQLDGRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFKRDVRNLPDEIRDRRVRFETH
Ga0311340_101224952	3300029943	Palsa	MVGVGEFEQFDGRAVFDDERDADAVGWAVGRNQDFAASKLGGEISHFKRNVRN
Ga0311340_102782061	3300029943	Palsa	MVGVGEFEQFDGRAVFDDERNADAVGWAVGRNQDFAASKLGGEIGHFKRDVRNLPDQIRD
Ga0311352_103369142	3300029944	Palsa	MVGVGEFEQFDGRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFKRDVRNLPDEIRDRR
Ga0311346_101284701	3300029952	Bog	MVGVGEFEQFDERAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFKRDVRNLPDETRD
Ga0311331_115258341	3300029954	Bog	MVRVGEYEQFDGRAVFDDERDADAIGRAVGRSQDFAASKLGGEIGHFKRDVRNLPDEIRDRRVRF
Ga0311342_101478691	3300029955	Bog	MVGVGEFEQFDERAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFKRDVRNLPDET
Ga0311339_116339682	3300029999	Palsa	MVRVGKFEQFDGRAVFGDERDADAVGWAVGRDQDFAASKLGGEISHFKRDVRNLPDQIGDRRV
Ga0311339_118369041	3300029999	Palsa	MVGVGEFEQFDGRAVFDYEGDTDTVGWAVGRNQDLAASKLGGEISHFKRDVRNLPDEIRDRRV
Ga0302306_103643201	3300030043	Palsa	LYQHLALPVAGRVVGVGEFEQFDGSAVFDYERDADAVGWAVRRNQDFAASKLGGEISHFKRDVRNVPDEIR
Ga0302177_102625701	3300030053	Palsa	VVGVGEFEQFDGRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFKRDVRNLPDEIRDRR
Ga0302182_103448082	3300030054	Palsa	LYQHLALPVAGRVVGVGEFEQFDGSAVFDYERDADAVGWAVRRNQDFAAGKLGGEISHFK
Ga0302179_105455101	3300030058	Palsa	MVGVGEFEQFDGRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFKRDVRNLPD
Ga0311353_101129503	3300030399	Palsa	MVGVGEFEQFDGRAVFDDECDADALGWAVGRNQDFAASKLGGEIRHFKRDVRNLADEIGD
Ga0311370_100438181	3300030503	Palsa	MVGVGEFEQFDGRAVFDDERNADAVGWAVGRNQDFAASKLGGEIGHFKRDVRNLP
Ga0311370_120815361	3300030503	Palsa	MVGVGEFEQFDGRAVFDYERDADAVGWAVRRNQDFAAGKLGGEISHFKRD
Ga0311370_123932662	3300030503	Palsa	MVGVGEFEQFDGRAVFDYERDADAVGWAVRRNQDFAASELGGQISHFKRDVRNL
Ga0302194_103346671	3300030506	Bog	MFSARLLAAARMVGVGEFEQFDGCAVFDYERDADALGWAVGRNQDFAASKLGGEISHFKRDVRNLPDEIRDR
Ga0302193_100938553	3300030519	Bog	MFSARLLAAARMVGVGEFEQFDGCAVFDYERDADALGWAVGRNQDFAASKLGGEISHFKRDVRNLPDEIR
Ga0311357_107502172	3300030524	Palsa	MVGVGEFEEFDRRAIFDDERNADAVGWAVGRNQDFAASKLGGEISHFKRDVRNLPDEIRDRR
Ga0311357_118447831	3300030524	Palsa	VVGVGEFEQFDGRSVFDYERDADAVGWAVRRNQDFAASKLGGEISHFKRD
Ga0311356_120254192	3300030617	Palsa	MVRVGKFEQFDGRAVFGDERDADAVGWAVGRDQDFAASKLGGEISHFKRDVRNLPDEIRD
Ga0311354_107377682	3300030618	Palsa	MVGVGEFEQFDGRAVFDYERDADAVGWAVRRNQDFAASELGGQISHFKRDVRNLPDE
Ga0311354_107384292	3300030618	Palsa	MVGVGEFEQFDGRAVFDYERDLDAVGWAVGRNQDFAASKLGGEISHFKGDVRNLPDEIRDRR
Ga0302316_100408006	3300030646	Palsa	MVGVGEFEQFDGRAVFDDERDADAVGWAVGRNQDFAAGKLGGEIGHFKRDVRNLPDEIR
Ga0302313_100944012	3300030693	Palsa	MVGVGEFEQFDGRAVFDYERDADAVGWAVGRNQYFAASKLGGKISHFKRNVRNL
Ga0170824_1057039781	3300031231	Forest Soil	MVGVGEFEQFNGRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFKRDV
Ga0170824_1192264372	3300031231	Forest Soil	MVGVGEFEQFDGRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFKRDV
Ga0302325_114712162	3300031234	Palsa	MVGVGEFEQFDRRAVFDYECDADAVGWAVGRNQDFAAGKLRGEISHFK
Ga0302324_1002786495	3300031236	Palsa	MVGVGEFEQFDGRAVFDYERDADAVGWAVGRNQDFAASKLGGEISHFKRDVRNLPDEIRDRRVRFET
Ga0302324_1029099373	3300031236	Palsa	MVGVNEFEQFDGRAVFDDERDADAVGWAVGRNQDFAASKLGGQISHFKRDVRNLPDEIRD
Ga0302324_1035303951	3300031236	Palsa	MVRVGKFEQFDGRAVFGDERDADAVGWAVGRDQDFAASKLGGEISHFKRDER
Ga0170818_1055448622	3300031474	Forest Soil	MVGVGEFEQFDGRAVFDYERDADAVGWAVRRNQDFAASKLGGEISHFKRDVRNLPDEIRD
Ga0302326_111579961	3300031525	Palsa	MVGVGEFEQFDGRAVFHYERDADAVGWAVGRNQDFAASKLGGEISHFKRDVRNLPDEI
Ga0302326_114526132	3300031525	Palsa	MVGVGEFEQFDGRAVFDYERDADAVGGAVGRNQDFAASKLGGEISHFKRDVRNLPDEIRDRRVR
Ga0302326_120028281	3300031525	Palsa	MVGVGEFEQFDGRAVFDYERDSDAVGWAVGGDQDFAASKLGGEISHFKRDVRNLPDEIRDRR
Ga0310686_1032002421	3300031708	Soil	MVGVGEFEQFDGRAVFDYERDPDAVGWAVRRNQDFAASKLGGEISHFKRDVRNV
Ga0307478_115767541	3300031823	Hardwood Forest Soil	MVGVGEFEQFDGRAVFDDERDADAVGWAIGSNQNFAASQLGGEISHFKRDVRNLPD
Ga0302322_1009301471	3300031902	Fen	MVGVGEFEQFDGSAVFDNERDADAVGWAVGRNQDFAAFELGGEISYFKRDV
Ga0348332_143080942	3300032515	Plant Litter	MVRVDEFEQFDGRAVFHYERNANAVGWAVGRNQDFAASKLGGKISNFKRDVRNLPDEIRDRRVR
Ga0335072_116689722	3300032898	Soil	VVGVGEFEQFDGRAVFDYERDADAVGWAVRRNQDFAASKLGGEISHFKRDVRNLP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087459

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences