Metagenome / Metatranscriptome Family F087461

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087461
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	62 residues
Representative Sequence	MQSARASPIELEVGRIRELSKDGRHSEALVAAELLAVAAPQNRDLLYLIAANQRCLNRI
Number of Associated Samples	82
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	70.00 %
% of genes near scaffold ends (potentially truncated)	99.09 %
% of genes from short scaffolds (< 2000 bps)	94.55 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.77

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.545 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (17.273 % of family members)
Environment Ontology (ENVO)	Unclassified (50.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.364 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.57% β-sheet: 0.00% Coil/Unstructured: 49.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.77
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.77
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.157.1.13: Alkylsulfatase-like	d2cfua2	2cfu	0.84408
a.234.1.1: Hypothetical protein MPN330	d1td6a_	1td6	0.82948
a.118.8.0: automated matches	d7beva1	7bev	0.82024
a.118.8.0: automated matches	d6px0a_	6px0	0.81834
a.118.8.1: Tetratricopeptide repeat (TPR)	d1ihga1	1ihg	0.81703

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF04185	Phosphoesterase	65.45
PF05506	PLipase_C_C	4.55
PF01583	APS_kinase	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	70.00
COG0529	Adenylylsulfate kinase or related kinase	Inorganic ion transport and metabolism [P]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.55 %
Unclassified	root	N/A	15.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.55 %
Unclassified	root	N/A	15.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.55 %
Unclassified	root	N/A	15.45 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	45.45 %
Unclassified	root	N/A	15.45 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.64 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	17.27 %
Unclassified	root	N/A	15.45 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	21.82 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	16.36 %
Unclassified	root	N/A	15.45 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %

Name	Rank	Taxonomy	Distribution
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	21.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	16.36 %
Unclassified	root	N/A	15.45 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	21.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	16.36 %
Unclassified	root	N/A	15.45 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.91 %

Name	Rank	Taxonomy	Distribution
Methylocapsa acidiphila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	21.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	16.36 %
Unclassified	root	N/A	15.45 %
Burkholderia cepacia complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex	0.91 %

Name	Rank	Taxonomy	Distribution
Methylocapsa acidiphila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	21.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	16.36 %
Unclassified	root	N/A	15.45 %
Burkholderia cenocepacia	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia cenocepacia	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_11934314	Not Available	610	Open in IMG/M
3300000955\|JGI1027J12803_106186193	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300002245\|JGIcombinedJ26739_100417449	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300002245\|JGIcombinedJ26739_100870189	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300004082\|Ga0062384_100795205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	660	Open in IMG/M
3300005177\|Ga0066690_10961293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	540	Open in IMG/M
3300005187\|Ga0066675_10483597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	924	Open in IMG/M
3300005332\|Ga0066388_102437098	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	950	Open in IMG/M
3300005332\|Ga0066388_103109833	All Organisms → cellular organisms → Bacteria → Proteobacteria	848	Open in IMG/M
3300005332\|Ga0066388_104373711	All Organisms → cellular organisms → Bacteria → Proteobacteria	720	Open in IMG/M
3300005332\|Ga0066388_104701510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	695	Open in IMG/M
3300005332\|Ga0066388_106761631	All Organisms → cellular organisms → Bacteria → Proteobacteria	578	Open in IMG/M
3300005332\|Ga0066388_107558806	Not Available	545	Open in IMG/M
3300005332\|Ga0066388_107719852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	539	Open in IMG/M
3300005332\|Ga0066388_107895089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	532	Open in IMG/M
3300005575\|Ga0066702_10914396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300005610\|Ga0070763_10178553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	1123	Open in IMG/M
3300005610\|Ga0070763_10739894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	578	Open in IMG/M
3300005764\|Ga0066903_107103784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	580	Open in IMG/M
3300006050\|Ga0075028_100348713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	836	Open in IMG/M
3300006052\|Ga0075029_101229564	All Organisms → cellular organisms → Bacteria → Proteobacteria	524	Open in IMG/M
3300006059\|Ga0075017_101541410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	524	Open in IMG/M
3300006162\|Ga0075030_100581611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	889	Open in IMG/M
3300006162\|Ga0075030_100790736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	750	Open in IMG/M
3300006176\|Ga0070765_102241473	Not Available	509	Open in IMG/M
3300006176\|Ga0070765_102266336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	506	Open in IMG/M
3300006358\|Ga0068871_100402235	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300006800\|Ga0066660_11062530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	645	Open in IMG/M
3300009088\|Ga0099830_10175210	All Organisms → cellular organisms → Bacteria	1665	Open in IMG/M
3300009101\|Ga0105247_11340610	Not Available	576	Open in IMG/M
3300009665\|Ga0116135_1154280	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300009826\|Ga0123355_10482204	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
3300010043\|Ga0126380_11969575	Not Available	533	Open in IMG/M
3300010046\|Ga0126384_10465833	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300010047\|Ga0126382_11485462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	622	Open in IMG/M
3300010048\|Ga0126373_11392177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	767	Open in IMG/M
3300010048\|Ga0126373_12518400	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300010048\|Ga0126373_13054566	Not Available	522	Open in IMG/M
3300010159\|Ga0099796_10362663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	627	Open in IMG/M
3300010343\|Ga0074044_10059971	All Organisms → cellular organisms → Bacteria	2591	Open in IMG/M
3300010358\|Ga0126370_10240393	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300010358\|Ga0126370_12055579	Not Available	560	Open in IMG/M
3300010359\|Ga0126376_11043444	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300010359\|Ga0126376_12002355	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300010362\|Ga0126377_13274846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	523	Open in IMG/M
3300010376\|Ga0126381_100669223	All Organisms → cellular organisms → Bacteria	1482	Open in IMG/M
3300010376\|Ga0126381_102272550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	779	Open in IMG/M
3300010376\|Ga0126381_104732838	Not Available	524	Open in IMG/M
3300010398\|Ga0126383_11388279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	792	Open in IMG/M
3300010398\|Ga0126383_11574578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	746	Open in IMG/M
3300012948\|Ga0126375_10251622	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300012971\|Ga0126369_13053674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	548	Open in IMG/M
3300014492\|Ga0182013_10264669	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300014969\|Ga0157376_12460619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	560	Open in IMG/M
3300015264\|Ga0137403_10819008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	785	Open in IMG/M
3300015373\|Ga0132257_103241879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	592	Open in IMG/M
3300015374\|Ga0132255_100403157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	1991	Open in IMG/M
3300015374\|Ga0132255_105436675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	539	Open in IMG/M
3300016270\|Ga0182036_10140921	All Organisms → cellular organisms → Bacteria	1703	Open in IMG/M
3300016319\|Ga0182033_12141558	Not Available	510	Open in IMG/M
3300016387\|Ga0182040_11257946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	624	Open in IMG/M
3300016404\|Ga0182037_10833045	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300016445\|Ga0182038_10490635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1046	Open in IMG/M
3300017975\|Ga0187782_11263119	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300018060\|Ga0187765_10423764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	827	Open in IMG/M
3300021168\|Ga0210406_10278779	All Organisms → cellular organisms → Bacteria	1365	Open in IMG/M
3300021171\|Ga0210405_11433766	Not Available	502	Open in IMG/M
3300021180\|Ga0210396_10468914	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300021403\|Ga0210397_10950256	Not Available	666	Open in IMG/M
3300021407\|Ga0210383_10097868	All Organisms → cellular organisms → Bacteria	2466	Open in IMG/M
3300021432\|Ga0210384_10077905	All Organisms → cellular organisms → Bacteria	2981	Open in IMG/M
3300021432\|Ga0210384_11139826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	684	Open in IMG/M
3300021433\|Ga0210391_10120150	All Organisms → cellular organisms → Bacteria	2069	Open in IMG/M
3300021474\|Ga0210390_10643572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	886	Open in IMG/M
3300021475\|Ga0210392_10121629	All Organisms → cellular organisms → Bacteria	1748	Open in IMG/M
3300021475\|Ga0210392_11424532	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300021477\|Ga0210398_10355898	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300021560\|Ga0126371_13139439	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300021861\|Ga0213853_10171007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	942	Open in IMG/M
3300025900\|Ga0207710_10552632	Not Available	600	Open in IMG/M
3300025930\|Ga0207701_10349033	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300025930\|Ga0207701_11570484	Not Available	530	Open in IMG/M
3300026480\|Ga0257177_1038804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	719	Open in IMG/M
3300026979\|Ga0207817_1031628	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300027652\|Ga0209007_1072248	Not Available	871	Open in IMG/M
3300027879\|Ga0209169_10046880	Not Available	2254	Open in IMG/M
3300027889\|Ga0209380_10386020	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300027894\|Ga0209068_10180977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	1153	Open in IMG/M
3300027911\|Ga0209698_11374289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	515	Open in IMG/M
3300028906\|Ga0308309_11079248	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300030000\|Ga0311337_11152988	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300031028\|Ga0302180_10320688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	793	Open in IMG/M
3300031715\|Ga0307476_11334595	Not Available	523	Open in IMG/M
3300031715\|Ga0307476_11431358	Not Available	502	Open in IMG/M
3300031718\|Ga0307474_10158567	All Organisms → cellular organisms → Bacteria	1710	Open in IMG/M
3300031718\|Ga0307474_10772941	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300031753\|Ga0307477_10223860	All Organisms → cellular organisms → Bacteria	1305	Open in IMG/M
3300031753\|Ga0307477_10758068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	646	Open in IMG/M
3300031823\|Ga0307478_10667679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia cenocepacia	870	Open in IMG/M
3300031823\|Ga0307478_10753519	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300031910\|Ga0306923_10291286	All Organisms → cellular organisms → Bacteria	1866	Open in IMG/M
3300031910\|Ga0306923_11606209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	676	Open in IMG/M
3300031910\|Ga0306923_11996725	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300032009\|Ga0318563_10517124	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300032076\|Ga0306924_11164188	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300032089\|Ga0318525_10014458	All Organisms → cellular organisms → Bacteria → Proteobacteria	3644	Open in IMG/M
3300032174\|Ga0307470_11046136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	653	Open in IMG/M
3300032180\|Ga0307471_102312324	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300032895\|Ga0335074_10939874	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300033290\|Ga0318519_10271251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	987	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.73%
Host-Associated	Host-Associated	7.27%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.64%
Aquatic	Environmental → Aquatic	9.09%
Plants	Host-Associated → Plants	6.36%
Arthropoda	Host-Associated → Arthropoda	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.82%
Sediment	Environmental → Aquatic → Sediment	6.36%
Freshwater	Environmental → Aquatic → Freshwater	2.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.73%
Peat	Environmental → Terrestrial → Peat	1.82%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.91%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.09%
Loam	Environmental → Terrestrial → Soil → Loam	18.18%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.36%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.82%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.36%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.73%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.91%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	17.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.55%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	9.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.18%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.36%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.91%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.91%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.91%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.91%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.91%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.91%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300026480	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B	Environmental	Open in IMG/M
3300026979	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 13 (SPAdes)	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_119343141	3300000789	Soil	MELEVRRIRELSMGGRYHEALTAAEIFADTAPQNRDVLYLIATNQRCLNQTKEALDT
JGI1027J12803_1061861931	3300000955	Soil	VATPAFPAVELQIGRIRELSKRCWHKEALAAAESLAVQVPQNRDALYLIAANQRCLNRP
JGIcombinedJ26739_1004174493	3300002245	Forest Soil	VPTSHALSPIEVEVDHIRELGRNGRYGEALAAAEASTAGAPADRDVLYLIAANQRCLNRISDALATLQQ
JGIcombinedJ26739_1008701892	3300002245	Forest Soil	VAGINHSFVSSPAASSPIDLGVSRIRELSRRGRHSEALSEAEMLAAGAPSNRDVLYLI
Ga0062384_1007952053	3300004082	Bog Forest Soil	MGTPSASAPIELDVGHVRELSKRGRHSEALAAAEMLAAAAPPNRDVLYLIAANQRCLNRIHEA
Ga0066690_109612932	3300005177	Soil	MQSARASPIELEVGRIRELSKDGRHSEALVAAELLAVAAPQNRDLLYLIAANQRCLNRIHAALETLR
Ga0066675_104835971	3300005187	Soil	MQSARASPIELEVSRIRELSKDGRHSEALVAAELLAVAAPQNRDLLYLIAANQRCLNRIHAALETLRRMEQLH
Ga0066388_1024370982	3300005332	Tropical Forest Soil	MQTPTPASIEQDVRRIRALSQRGLHREALVATEALVVAAPENRDLLYLVAVNQ
Ga0066388_1031098332	3300005332	Tropical Forest Soil	VPTVPESSSESAPIELQVGHIRELSKLGLHYEALAAAQALAVAAPQNREALYLIAANQR*
Ga0066388_1043737111	3300005332	Tropical Forest Soil	MTSASASSPTEIEVGRIRDLGRSGRHYEALIAAQALAVTLPDDRDLLYLIAANQRCL
Ga0066388_1047015101	3300005332	Tropical Forest Soil	MQRPTALPIKVDVSHIRELSAHGRHGEALVAAESLVVAAPQDRDLLYLVAVNQRCLDRIDEALGTLQRLE
Ga0066388_1067616311	3300005332	Tropical Forest Soil	MTSASTASPIEIEVSRICELGKSGRHYEALAAAEALAVAMPDNRDVLYLIAANQRCLNRISEA
Ga0066388_1075588061	3300005332	Tropical Forest Soil	MASLVELDVSRIRELGERGQYREALVTAEALLPAAPQHRDLLYLVAINQRCLDHIDEALETLQRLEQR
Ga0066388_1077198522	3300005332	Tropical Forest Soil	MQSPSAPSPMELEVGRIRELSKGRRHCEALSAAEALAAIAPQNRDVLYLIAANQRCLNRIHEA
Ga0066388_1078950892	3300005332	Tropical Forest Soil	MARPSSPIELEVSHIREFSKGGRHCEALAAAEVLAAGVPQNRDVLYLIAANQRCLNRIPEALATLQRL
Ga0066702_109143962	3300005575	Soil	MQSARASPIELEVARIRELSKGGRHPEALVAAEVLAVAAPQDRDLLYLIAANQRCLNRIHEALE
Ga0070763_101785531	3300005610	Soil	VPSPSASSPIELEVGRIRELSKSGRHCEALSAAEALAVAEPQNRSALYLVATNQRCLNRITEALAMLQELEQQQPRF
Ga0070763_107398941	3300005610	Soil	MASSSASLQIELIELEVRRIRELSTLGQHGEALAAAEALATAAPRNRDAVYLLAANQRCLNRILEALATLHTLEQQH
Ga0066903_1071037841	3300005764	Tropical Forest Soil	MPSVPLPIEVEVGRIRELSKSGRHGEALGAAEALAVAAPGNRDVLYLIAANQR
Ga0075028_1003487131	3300006050	Watersheds	MQSSSASSPIELEVGRIRELSKGRRHGEALAAAEVLAAAAPQNRHVLYLLAANQRCLNRIHE
Ga0075029_1012295641	3300006052	Watersheds	MQSPPPASPIELEVGRIRELSKDGRHCEALAEAEALAAAAPQNRDVLYLIAANQRCLN
Ga0075017_1015414102	3300006059	Watersheds	MPSAPPSFPIELEVGRIRELSKRGQHGEALAAAEALAAAAPQNRDVLYLMAANQRC
Ga0075030_1005816111	3300006162	Watersheds	MQSPLAPSPPLELEIGRIRELSRSGRHSEALAAAEAAAASAPLSRDVLYLIAANQRC
Ga0075030_1007907361	3300006162	Watersheds	VESPSVSSPIELEVVRIRELSKGRRHGDALAAAEVLAAAAPQNRHVLYLIAANQRCLNRIHEALA
Ga0070765_1022414732	3300006176	Soil	MQSPSASSPIELPIELEIGRIRALSKSGRHSEALAAAAALAAAAPQSRDVLYLIAANQRCVHRIHEALETLQRL
Ga0070765_1022663361	3300006176	Soil	VQSPSASSPIELEVGRIRELSMGRRHGEALAAAEVLAAAAPQNRHALYLIAAN
Ga0068871_1004022351	3300006358	Miscanthus Rhizosphere	MELEVRRIRELSMSGRYHEALTAAQALAATGPKNRDVLYLIAANQR
Ga0066660_110625302	3300006800	Soil	MQSARASPIELEVGRIRELSKDGRHSEALVAAELLAVAAPQNRDLLYLIAANQRCLNRIHAALETLRRMEQV
Ga0099830_101752102	3300009088	Vadose Zone Soil	MQSARASPIELEVGRIRELSKDGRHSEALVAAELLAVAAPQNRDLLYLIATNQRCMNRIHAALETLRRMEQLH
Ga0105247_113406102	3300009101	Switchgrass Rhizosphere	MELEVRRIRELSMSGRYHEALTAAQALAATGPKNRDVLYLIAANQRSLNQT
Ga0116135_11542801	3300009665	Peatland	MSTPAPSSPYDFEVARIRELSRRGLHGEALAKAEMLAAEAPASRDVLYLIAANLRCL
Ga0123355_104822041	3300009826	Termite Gut	MPASSALSIEVEVGRIRELSKSGRHYEALVASGELAAEAPENRDVLYLIAANQRCLN
Ga0126380_119695752	3300010043	Tropical Forest Soil	MTSASASSPIEIEVGRIRELAQSGRHYEALAAAETLAGAMPDNRDVLYLIAANQRCLNRISEALATLHHLELQHPRFTLLYQ
Ga0126384_104658331	3300010046	Tropical Forest Soil	VSPVELDVSRIRGLSERGRHHEALVAAEALALAAPKNRDLLYLVAVNQRCLNCIHEALD
Ga0126382_114854621	3300010047	Tropical Forest Soil	MGRIRALSKGRRHREALAAAEALVAAAPQNRDVLYLIATNQRCLNRIPE
Ga0126373_113921772	3300010048	Tropical Forest Soil	MVDDRIAMSSLPASSSIEREVQRIREWSKRGRHRDALNAAELLSATAPGHRDVLYVIAANQRCLNQVAAALATL
Ga0126373_125184001	3300010048	Tropical Forest Soil	MSSASATLPFELEVARIRELSESQQHSEALSAAVALAAEAPEDRDVLYLIAANQRCLRRIPEALET
Ga0126373_130545661	3300010048	Tropical Forest Soil	MSYGAGNVHVYMRSPSASSPIELELDRIRDLSKRRLHREALAAAEMLATAAPLNRDVLYLIAANQRCLNRIPEALETLRRLEQRHPCFSLVYQERGY
Ga0099796_103626631	3300010159	Vadose Zone Soil	MQSASASPIELEVGRIRELSKGGRHSEALVAAELLAVAAPKNRDLLYLIATNQRCLNRIHAALETLRR
Ga0074044_100599712	3300010343	Bog Forest Soil	MRIPSASSPIELEVGRIRELSKGGRHREALAAAEILAAAKPPSRDVLYLIAANQ
Ga0126370_102403932	3300010358	Tropical Forest Soil	MARPSSPIELEVSHIREFSKGGRHCEALAAAEVLAAGVPQNRDVLYLIAANQRCLNRIPEALA
Ga0126370_120555791	3300010358	Tropical Forest Soil	VPTPRAPSSIEVEVGRIRELSKSSHYSEALAAAEALALHVPQNRDVLYLIAANQRCLNRTIRALHTLEQLEQQH
Ga0126376_110434442	3300010359	Tropical Forest Soil	MTSASPSSPIEVEVARIRELSKNGRHYQALAAAEALAVAMPDHRDLLYLIAANQRCLNRV
Ga0126376_120023552	3300010359	Tropical Forest Soil	MPSSSASTAIELEVGRIRELSRSLRHSEALAAAEALAVTKPDDRDVLYLIAANQRCLHRIPDALATLQRLEHLHPRLSLLY
Ga0126377_132748461	3300010362	Tropical Forest Soil	MARPSSPIELEVSHIREFSKGGRHCEALAAAEVLAAGVPQNRDVLYLIAANQRCLNRIPE
Ga0126381_1006692232	3300010376	Tropical Forest Soil	MRSPTASSPIEIEVDRIRDLSKRGLHREALVAAEMLAAAAPLNRDVLYLIAANQRCLNRISDALETLRRLEQGHPCFSL
Ga0126381_1022725501	3300010376	Tropical Forest Soil	MSSASAALPFELEVARIRELSESRQHSEALSAAEALAVEAPEDRDVLYLIAANQRCLRRIPDALET
Ga0126381_1047328381	3300010376	Tropical Forest Soil	VPSLPRSLQIEPEVVQIRELSKRGQHSQALAAAEALAAAEPENRDALYLIAANLRCLNRLSEALKTLQQ
Ga0126383_113882792	3300010398	Tropical Forest Soil	MESLSVPTPIEVEVGRIRELSKGRRHCEALAAAEALAAAAPQNRDVLYLIAANQR
Ga0126383_115745782	3300010398	Tropical Forest Soil	MPMSSSHTSSTTELGLGRIRELSKCGRHREALVAAEVLAATMPRNRDVLYLIAANQRCLDRIGEALAT
Ga0126375_102516222	3300012948	Tropical Forest Soil	MPNAFASSIELELGHIRELSRSGRHSEAIVAVEALAIEVPENRDVLYLIAA
Ga0126369_130536742	3300012971	Tropical Forest Soil	MPSPSASSPIELPIEREVGRIRELSRSGRHLEALAAAEVLAARAPQNRDSLYLIAANQRCLSRIPEALATL
Ga0182013_102646691	3300014492	Bog	VPAELEVRRVRELTQGRRYAAALDAAQALAATAPESRDVLYLIAVNQRCLNRLPEALATL
Ga0157376_124606191	3300014969	Miscanthus Rhizosphere	MQSSSGPSPIELDVGRIRELSKDRRHYEALAAAEALAAVASQNRDVLYLIAANQRCLNRIHEALAT
Ga0137403_108190082	3300015264	Vadose Zone Soil	MQSARASPIELEVGRIRELSKDGRHSEALVAAELLAVAAPQNRDLLYLIAANQRCLNRI
Ga0132257_1032418792	3300015373	Arabidopsis Rhizosphere	MQSARASPIELEVAHIRELSKGGRHPEALVAAEVLAVAAPQDRDLLYLIAANQRCLNRIHEALETLRRLEQ
Ga0132255_1004031572	3300015374	Arabidopsis Rhizosphere	MQSARASPIELEVAHIRELSKGGRHPEALVAAEVLAVAAPQDRDLLYLIAANQRCLNRIHEALETLRRLEQLHPRF
Ga0132255_1054366752	3300015374	Arabidopsis Rhizosphere	MHSARPSPIEIEVGRIRELSTSGRYAEALVAAEVLAVAAPQDRDLLYLIAANQRCLKRIHEALETLRRLEEL
Ga0182036_101409211	3300016270	Soil	VPSPSASVELEVGRIRELSKRGSHREALAAAEVLAAAAPQNRDALYLIAANQRCLNR
Ga0182033_121415581	3300016319	Soil	MPSPSASPPIELELGRIRELSKGGRHCEALAAAELLATSVPQNRDVLYLIAANQRC
Ga0182040_112579462	3300016387	Soil	MPGVSASLRVELEVDRIRELSKGGRHVEALAAAEALAVAVPGNRDVLYLVAANQRCLNRIPEALA
Ga0182037_108330451	3300016404	Soil	MSSPSASPIELEVGRIRDLSKTFRHSEALAAAETLEVVVPHNRDVLYLIAANQRCLNRIPEALAT
Ga0182038_104906353	3300016445	Soil	MELEVSRIRELSKSGRHCEALAAAEALAVEGPQHRDVLYLIAANQRCL
Ga0187782_112631192	3300017975	Tropical Peatland	MLSPSVPSSIELEVGRIRELSKSGRHSEALAAAATLADSAPPNRDLLYLIAANQ
Ga0187765_104237641	3300018060	Tropical Peatland	MSIPPVASPVEVELNRIRELSRHGKHLDALAAAELLAAAAPSNRDALYLIAANQRCLSRIPDAL
Ga0210406_102787792	3300021168	Soil	MQNPSASSPIEIEVGRIRELSKGGRHCEALAAAEVLAARALENRDVLYLIAAN
Ga0210405_114337661	3300021171	Soil	MQTISPPIEFEVGRIRELSKAGRYEDALAAAEALMAAAPRYRHALFLVAANQRCLNR
Ga0210396_104689141	3300021180	Soil	MQSPSTSSGIEVELHRIRELSKSRRHSEALAAAEALANAVPENRYALYLIAANQR
Ga0210397_109502562	3300021403	Soil	VPASHTIPPIEAEVDRIRELSRKGRHEEALAVAEGFAAGTHVNRDVLYLIAANQRCLNRISDALTTL
Ga0210383_100978681	3300021407	Soil	MQNPSASSPTEIEVGRIRELSKGGRHCEALAAAEVLAAAALENRHVLYLIAANQRC
Ga0210384_100779052	3300021432	Soil	MQTSSLSPPIELEVSRIRDLSKGGRYGEALAAAEELATEAPQNRAALYLVAANQRCLNLIDEALATSQRLEQLHPRF
Ga0210384_111398261	3300021432	Soil	MRSPSASAPNELEVGRIRELSKGGRHSEALAAAEMLAAAAPSDRDALYLIAAN
Ga0210391_101201501	3300021433	Soil	MQNPAANSLIEPEVVRIRELSKCSRYREALAAAEELAVSAPQNRDALYLIATNLRCLNRIDEAL
Ga0210390_106435722	3300021474	Soil	MASASASSSRLIEVEVARIRELSKGGRHSEALAEAEALAMSAPQHRDVLYLIAANQRCLNRIPEALAMLQRLERHCPK
Ga0210392_101216291	3300021475	Soil	MQTISPPVEFEVGRIRELSKAGRYEDALAAAEALMAAAPKYRHALFLVAANQRCLNRIDEALETLRR
Ga0210392_114245321	3300021475	Soil	VSSPVEVEVARIRELSKSGLHSEALAAAEALAGVAFENRDVLYLIAANLRCL
Ga0210398_103558982	3300021477	Soil	MPSPAAHSLNEVEVVRIRELGKCGRYREALAAAEELAVAAPVNRDALYLIATNQRCLNRIDDALATLQR
Ga0126371_131394392	3300021560	Tropical Forest Soil	MSGVSAACQIELEVERIRELSRGSRHAEALAAVEALAAKAPENRDVLYLIAAIQRCLDRIRR
Ga0213853_101710072	3300021861	Watersheds	MQSLSESPPIELDVCRIRELSKGGRHSEALAAAELLAADAPQNRDVLYLIAANQRCLNRIHEALTTLQR
Ga0207710_105526322	3300025900	Switchgrass Rhizosphere	MELEVRRIRELSMSGRYHEALTAAQALAATGPKNRDVLYLIAANQRSLNQTKE
Ga0207701_103490331	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MELELRRIRELSMSGRYHEALTAAEALAATGPKNRDVLYLIAANQRSLN
Ga0207701_115704842	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MPSPSAYSLIELEIGRIRELSKSRRHDEALAAAEALAVTVPESRDVLYLIAA
Ga0257177_10388041	3300026480	Soil	MQSARASPIELEVGRIRELSKDGRHSEALVAAELLAVAAPQNRDLLYLIAANQRCLNRIHAALETLRRMEQLHPR
Ga0207817_10316281	3300026979	Tropical Forest Soil	MPSPSAPSPIELEVSRIRKLSRDGQHREALAAAEALALVAPQNRDVLYLIAAN
Ga0209007_10722481	3300027652	Forest Soil	VPSPSALSPIELEVGRIRELSKDGRHYEALAAADALAVAAPQNRNVLYLIATNQRCLNRIREALAILQRLE
Ga0209169_100468802	3300027879	Soil	MPSPSSSPVELEVGHIRELSKASRHAEALAAAEVLAAADPENRDPLYLIAANQRCLNRIPEAL
Ga0209380_103860201	3300027889	Soil	MQSTSPIELEVAHIRELSKGGRHSEALAASEALVSAAPQNRDVLYLIAIN
Ga0209068_101809771	3300027894	Watersheds	MQSPSPSSPIELEVGRIRELSKGGRHPEALAAAEALAARSPQNRDVLYLIAANQRCLNRIHEALETLQSLE
Ga0209698_113742891	3300027911	Watersheds	MQSLPASPPIELEVGRIRELSKGGRHFEALAAAELLSAAAPQNRDVLYLIAANQRCLNRTPDALANLQRLEQQ
Ga0308309_110792482	3300028906	Soil	MHSPSVQSPSASSPIELEVGRIRDLSKRGRHSEALAAANVLAAAAPRNRDALYLIAANQRCLN
Ga0311337_111529881	3300030000	Fen	MQSPSVFYPIELEVARVRDLSKGRRHNEALAAAEVLAAAAPQNRDVLYLIAANQR
Ga0302180_103206881	3300031028	Palsa	MPSPFAHTPVELELDRIRELSKGGRHSEALAAAETLTVAAPENRNVLYLIATNQRCLNRIKDALAVLQRLELQHP
Ga0307476_113345952	3300031715	Hardwood Forest Soil	MQTISPPIEFEVGRIRELSKAGRYEDALAAAEALMAAAPRYRHALFLVAANQRCLN
Ga0307476_114313581	3300031715	Hardwood Forest Soil	MASASASSQIELIGLEVRRIRELSAFGQHGEALAAAEALAAEAPQNRDVLYLIAANQRCLNQI
Ga0307474_101585672	3300031718	Hardwood Forest Soil	MQSLSASSPIELPIEIEVGRIRELSKDGRHPEAIAAAEALGATAPQNRDVLYLIAANQRCLNRIHDAL
Ga0307474_107729411	3300031718	Hardwood Forest Soil	MQSPSASSPIELEVGRIRELSRGGRHLEALGAAEALAAAAPENRDGLYLMAANQRCL
Ga0307477_102238601	3300031753	Hardwood Forest Soil	MASPSASSPIELDVGRIRDLSKSGRHREALAAAEVLAAAAPQNRDVLYLIAANQRCL
Ga0307477_107580682	3300031753	Hardwood Forest Soil	MPSAPASFSIELEVGRIRDLSKRGQHGEALAAAEALAAAAPQNRDLLYLIAANQRSLNRI
Ga0307478_106676791	3300031823	Hardwood Forest Soil	MHTLSFPPPIEQELGRIREFSKNGRHLDALSAAEALLAATPQNRHALYLIA
Ga0307478_107535192	3300031823	Hardwood Forest Soil	MQTPSESSPIELEVGRIRELSKAGHHGEALAAAEELAAAGGRGRDVLYLMAA
Ga0306923_102912861	3300031910	Soil	MPGVSASLRVELEVDRIRELSKGGRHVEALAAAEALAVAVPGNRDVLYLVAANQRCLNRI
Ga0306923_116062092	3300031910	Soil	MPSPSASSPIELPIELPLEREVGRIRELSRSGRHSEALAAAEVLAARSPQNRDSLYLIAANQRCLSRIP
Ga0306923_119967251	3300031910	Soil	MPRESASLAIDLEVARVRALSKSGRHSEALAAATELVAAAPSSRDALYLLATNQRCL
Ga0318563_105171241	3300032009	Soil	MPRDPASLTIELEVGRIRELSRSGRHSEALAAAIELVEAAPRNRDALYLLAANQRCL
Ga0306924_111641882	3300032076	Soil	VPGASASIELEVGRIRELSKRGRHREALAAAEVLAAAAPQNRDALYLIGANQRCL
Ga0318525_100144581	3300032089	Soil	MQSASASPIELDVSRIRELSERGRHREALVAAEALAVAAPPNRDLLYLVAVNQRCLNRIHEALET
Ga0307470_110461361	3300032174	Hardwood Forest Soil	MQSTFASAPIEFEVGRIRELSKGRRHSEALTAAEALAAAAPQNRDVLYLIAANQRCLNRIHEALAALRRLEQ
Ga0307471_1023123243	3300032180	Hardwood Forest Soil	MQSPSASSPIELEVGRIRELSKDRRHCEALAAAEGLAAAAPQDRRVLYLIAANQRC
Ga0335074_109398741	3300032895	Soil	MLTASSSIEPEVRRIRELSRSGRHGEALAEAQTLAAEAPGNRDLLYLMAANLRCLNRITEALS
Ga0318519_102712512	3300033290	Soil	MQSASASPIELDVSRIRELSERGRHREALVAAEALAVAAPQNRDLVYLVAVNQRCLNYVYQA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087461

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences