Metagenome / Metatranscriptome Family F087499

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087499
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	67 residues
Representative Sequence	MLRTFGIALLVTAMSVGLADAKGHKAPPKALAPCATEQQVKATCACGPAKIACPAGAYCHAFMNACTR
Number of Associated Samples	74
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	90.83 %
% of genes near scaffold ends (potentially truncated)	20.00 %
% of genes from short scaffolds (< 2000 bps)	80.00 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (66.364 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.273 % of family members)
Environment Ontology (ENVO)	Unclassified (31.818 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.727 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 17.71% β-sheet: 14.58% Coil/Unstructured: 67.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01842	ACT	3.64
PF04226	Transgly_assoc	2.73
PF14759	Reductase_C	2.73
PF13376	OmdA	1.82
PF06411	HdeA	1.82
PF00383	dCMP_cyt_deam_1	1.82
PF00589	Phage_integrase	1.82
PF07286	D-Glu_cyclase	1.82
PF02543	Carbam_trans_N	1.82
PF03734	YkuD	1.82
PF08238	Sel1	0.91
PF12071	DUF3551	0.91
PF00571	CBS	0.91
PF00596	Aldolase_II	0.91
PF13624	SurA_N_3	0.91
PF07045	DUF1330	0.91
PF01227	GTP_cyclohydroI	0.91
PF07731	Cu-oxidase_2	0.91
PF06577	EipA	0.91
PF04909	Amidohydro_2	0.91
PF09539	DUF2385	0.91
PF13751	DDE_Tnp_1_6	0.91
PF05128	DUF697	0.91
PF00484	Pro_CA	0.91
PF01650	Peptidase_C13	0.91
PF00753	Lactamase_B	0.91
PF01544	CorA	0.91
PF01068	DNA_ligase_A_M	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	2.73
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	1.82
COG2192	Predicted carbamoyl transferase, NodU family	General function prediction only [R]	1.82
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	1.82
COG4336	Uncharacterized conserved protein YcsI, UPF0317/DUF1446 family	Function unknown [S]	1.82
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.91
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	0.91
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.91
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.91
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.91
COG3768	Uncharacterized membrane protein YcjF, UPF0283 family	Function unknown [S]	0.91
COG5206	Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
All Organisms	root	All Organisms	33.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
cellular organisms	root	All Organisms → cellular organisms	33.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.45 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.73 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11.82 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.73 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	1.82 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.45 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.73 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	1.82 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.91 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.64 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.73 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.82 %
Caulobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	0.91 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.91 %
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.73 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.82 %
unclassified Caulobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter	0.91 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.91 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.91 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.73 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.82 %
Bradyrhizobium sp. BR 10261	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BR 10261	0.91 %
Rhodoplanes sp. JGI PP 4-B12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	0.91 %
Caulobacter sp. S45	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp. S45	0.91 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000655\|AF_2010_repII_A100DRAFT_1092342	Not Available	531	Open in IMG/M
3300004479\|Ga0062595_102602533	Not Available	507	Open in IMG/M
3300004633\|Ga0066395_10046748	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1896	Open in IMG/M
3300004633\|Ga0066395_10047654	Not Available	1882	Open in IMG/M
3300004633\|Ga0066395_10211103	Not Available	1021	Open in IMG/M
3300005167\|Ga0066672_10333152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	990	Open in IMG/M
3300005332\|Ga0066388_100083856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3575	Open in IMG/M
3300005332\|Ga0066388_100206930	Not Available	2586	Open in IMG/M
3300005332\|Ga0066388_100424199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1973	Open in IMG/M
3300005332\|Ga0066388_100451763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1926	Open in IMG/M
3300005332\|Ga0066388_102609666	Not Available	920	Open in IMG/M
3300005332\|Ga0066388_106836009	Not Available	574	Open in IMG/M
3300005436\|Ga0070713_100021952	Not Available	4923	Open in IMG/M
3300005436\|Ga0070713_100143447	All Organisms → cellular organisms → Bacteria	2117	Open in IMG/M
3300005439\|Ga0070711_101078548	Not Available	691	Open in IMG/M
3300005445\|Ga0070708_101993921	Not Available	537	Open in IMG/M
3300005576\|Ga0066708_10244511	Not Available	1139	Open in IMG/M
3300005764\|Ga0066903_101207234	Not Available	1405	Open in IMG/M
3300005764\|Ga0066903_101942521	Not Available	1128	Open in IMG/M
3300005764\|Ga0066903_102432108	Not Available	1013	Open in IMG/M
3300005764\|Ga0066903_102611477	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300005764\|Ga0066903_104397684	Not Available	753	Open in IMG/M
3300006047\|Ga0075024_100301393	Not Available	786	Open in IMG/M
3300006176\|Ga0070765_100424784	All Organisms → cellular organisms → Bacteria → Proteobacteria	1243	Open in IMG/M
3300006755\|Ga0079222_10107197	Not Available	1485	Open in IMG/M
3300006755\|Ga0079222_10333219	Not Available	1013	Open in IMG/M
3300006800\|Ga0066660_10339363	Not Available	1215	Open in IMG/M
3300006854\|Ga0075425_100934014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	991	Open in IMG/M
3300006893\|Ga0073928_10057769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3448	Open in IMG/M
3300006954\|Ga0079219_10134013	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300009090\|Ga0099827_10721438	Not Available	862	Open in IMG/M
3300010046\|Ga0126384_10042297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3094	Open in IMG/M
3300010048\|Ga0126373_10058727	All Organisms → cellular organisms → Bacteria	3443	Open in IMG/M
3300010048\|Ga0126373_11271428	Not Available	802	Open in IMG/M
3300010358\|Ga0126370_10064455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp. S45	2394	Open in IMG/M
3300010359\|Ga0126376_10285496	Not Available	1426	Open in IMG/M
3300010361\|Ga0126378_11598638	Not Available	740	Open in IMG/M
3300010366\|Ga0126379_10661839	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1135	Open in IMG/M
3300010366\|Ga0126379_11642624	Not Available	747	Open in IMG/M
3300012019\|Ga0120139_1085708	Not Available	780	Open in IMG/M
3300012198\|Ga0137364_10065115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2475	Open in IMG/M
3300012198\|Ga0137364_10174508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1565	Open in IMG/M
3300012199\|Ga0137383_10956502	Not Available	625	Open in IMG/M
3300012206\|Ga0137380_10862446	Not Available	779	Open in IMG/M
3300012207\|Ga0137381_10209335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1691	Open in IMG/M
3300012209\|Ga0137379_10797488	Not Available	849	Open in IMG/M
3300012349\|Ga0137387_10462475	Not Available	921	Open in IMG/M
3300012356\|Ga0137371_10029110	All Organisms → cellular organisms → Bacteria → Proteobacteria	4260	Open in IMG/M
3300015371\|Ga0132258_10234492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4474	Open in IMG/M
3300016270\|Ga0182036_11519778	Not Available	562	Open in IMG/M
3300016294\|Ga0182041_11132268	Not Available	712	Open in IMG/M
3300016294\|Ga0182041_11178939	Not Available	698	Open in IMG/M
3300016319\|Ga0182033_10942497	Not Available	766	Open in IMG/M
3300016341\|Ga0182035_10661501	Not Available	907	Open in IMG/M
3300016387\|Ga0182040_10280597	Not Available	1265	Open in IMG/M
3300016422\|Ga0182039_10459675	Not Available	1092	Open in IMG/M
3300016445\|Ga0182038_10826466	Not Available	813	Open in IMG/M
3300016445\|Ga0182038_11678096	Not Available	572	Open in IMG/M
3300017974\|Ga0187777_10534200	Not Available	822	Open in IMG/M
3300018060\|Ga0187765_10061799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	1956	Open in IMG/M
3300018433\|Ga0066667_10552715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. BR 10261	955	Open in IMG/M
3300018482\|Ga0066669_12339200	Not Available	511	Open in IMG/M
3300019888\|Ga0193751_1000698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24627	Open in IMG/M
3300019888\|Ga0193751_1003539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9137	Open in IMG/M
3300019888\|Ga0193751_1043504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1986	Open in IMG/M
3300021407\|Ga0210383_11008498	Not Available	706	Open in IMG/M
3300021560\|Ga0126371_10022438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5836	Open in IMG/M
3300021560\|Ga0126371_11699967	Not Available	755	Open in IMG/M
3300021560\|Ga0126371_12102204	Not Available	680	Open in IMG/M
3300021560\|Ga0126371_12465317	Not Available	629	Open in IMG/M
3300021560\|Ga0126371_12508772	Not Available	624	Open in IMG/M
3300021560\|Ga0126371_12918461	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300022557\|Ga0212123_10224879	Not Available	1368	Open in IMG/M
3300022557\|Ga0212123_10230994	Not Available	1343	Open in IMG/M
3300025928\|Ga0207700_12025185	Not Available	503	Open in IMG/M
3300026552\|Ga0209577_10421498	Not Available	949	Open in IMG/M
3300027050\|Ga0209325_1007841	Not Available	1165	Open in IMG/M
3300027725\|Ga0209178_1110262	Not Available	926	Open in IMG/M
3300027787\|Ga0209074_10017180	Not Available	1902	Open in IMG/M
3300027874\|Ga0209465_10005736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5425	Open in IMG/M
3300027874\|Ga0209465_10020930	Not Available	3013	Open in IMG/M
3300027874\|Ga0209465_10376482	Not Available	711	Open in IMG/M
3300027915\|Ga0209069_10201138	Not Available	1016	Open in IMG/M
3300031057\|Ga0170834_109464310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	911	Open in IMG/M
3300031231\|Ga0170824_108293357	Not Available	513	Open in IMG/M
3300031231\|Ga0170824_110076672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1522	Open in IMG/M
3300031231\|Ga0170824_115935448	Not Available	1145	Open in IMG/M
3300031421\|Ga0308194_10151195	Not Available	716	Open in IMG/M
3300031446\|Ga0170820_10248017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3763	Open in IMG/M
3300031446\|Ga0170820_13034621	All Organisms → cellular organisms → Bacteria → Proteobacteria	896	Open in IMG/M
3300031543\|Ga0318516_10823009	Not Available	524	Open in IMG/M
3300031572\|Ga0318515_10131422	All Organisms → cellular organisms → Bacteria	1328	Open in IMG/M
3300031716\|Ga0310813_11551505	Not Available	618	Open in IMG/M
3300031777\|Ga0318543_10186155	Not Available	920	Open in IMG/M
3300031797\|Ga0318550_10544590	Not Available	559	Open in IMG/M
3300031833\|Ga0310917_10074973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2131	Open in IMG/M
3300031833\|Ga0310917_10271606	Not Available	1143	Open in IMG/M
3300031879\|Ga0306919_10623039	Not Available	832	Open in IMG/M
3300031890\|Ga0306925_10399837	Not Available	1472	Open in IMG/M
3300031890\|Ga0306925_10985837	Not Available	860	Open in IMG/M
3300031890\|Ga0306925_12239038	Not Available	507	Open in IMG/M
3300031910\|Ga0306923_11603478	Not Available	676	Open in IMG/M
3300031912\|Ga0306921_10996853	Not Available	945	Open in IMG/M
3300031942\|Ga0310916_11663682	Not Available	517	Open in IMG/M
3300031954\|Ga0306926_10119040	All Organisms → cellular organisms → Bacteria	3253	Open in IMG/M
3300031954\|Ga0306926_11184178	Not Available	899	Open in IMG/M
3300031954\|Ga0306926_12006809	Not Available	650	Open in IMG/M
3300032261\|Ga0306920_100192078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3047	Open in IMG/M
3300033289\|Ga0310914_10093066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2579	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.27%
Host-Associated	Host-Associated	2.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.73%
Aquatic	Environmental → Aquatic	4.55%
Plants	Host-Associated → Plants	1.82%
Fungi	Host-Associated → Fungi	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.73%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.73%
Sediment	Environmental → Aquatic → Sediment	1.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.91%
Mycelium	Host-Associated → Fungi → Mycelium	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.09%
Loam	Environmental → Terrestrial → Soil → Loam	21.82%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.91%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.27%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.55%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.82%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	15.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.73%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	6.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.55%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.64%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.73%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.82%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A100DRAFT_10923422	3300000655	Forest Soil	MLRIFAIALLATAMSVGLADAKGRKAPPKASLAPCATEQQVKTACACGPAKIACPAGMYCHAFINSCTX*
Ga0062595_1026025331	3300004479	Soil	MLKTVAVALLATAMSVGVAGAKGHMAKPKALSPCQTEQQAKDNCACGPAKIACQKGMWCHAFTNACTR*
Ga0066395_100467482	3300004633	Tropical Forest Soil	MLRIFAIALLATAMSVGLADAKGRKAPPKASLAPCATEQQVKTACACGPAKIACPAGMYCHAFINSCTR*
Ga0066395_100476542	3300004633	Tropical Forest Soil	MLKTYAVAAMSVGLAEAKGHMAKPKTLPYCQNEQQTKETCACGPAKTVCPKGMWCHAFASTCRP*
Ga0066395_102111032	3300004633	Tropical Forest Soil	MLRIFAVAVLALSMSVGLADAKGHKAPPKALAPCATEQQVKATCACGPAKIACPAGAYCHAFMNACTR*
Ga0066672_103331522	3300005167	Soil	MLRIFAIALLATAMSVGLTDAKGHKHKAPPKASLAYCQTDQPAKANCACGPAKMPCPQGMWCHAFASACTR*
Ga0066388_1000838562	3300005332	Tropical Forest Soil	MLRTLAVALLATAMSVGLADAKGAKPKPKALPYCQTEQQAKDTCACGPTKTACQKGMWCHAFTSTCRP*
Ga0066388_1002069306	3300005332	Tropical Forest Soil	MLRTFAIALLATAMLVGLADAKGHKAPPKASLAPCATEQQVKTTCACGPAKITCPAGAYCHAFMNACTQ*
Ga0066388_1004241993	3300005332	Tropical Forest Soil	MLRIFAIALLTTAMSVGLAEAKGHIAKPKALSPCQTEQQAKATCACGPAKMACPAGAYCHAFVSACTR*
Ga0066388_1004517631	3300005332	Tropical Forest Soil	MLKTYAVALLAITMSVGLAEAKGHKPKTLPYCQNEQQTKETCACGPAKTVCPKGMWCHAFASICRP*
Ga0066388_1026096662	3300005332	Tropical Forest Soil	MLRTFAIALLATAMSVGLADAKGHKAPPPKASLAPCATEQQVKTTCACGPAKITCPAGAYCHAFMNACTQ*
Ga0066388_1068360091	3300005332	Tropical Forest Soil	MVSLSSLREEETMLRTFAIALLATAMSVGLADAKGHKAPPKASLAPCATEQQVKATCACGPAKITCPAGAYCHAFMNACTR*
Ga0070713_1000219525	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLRIFAVTLLATVMSVGWAEAKGHKPKALSPCQTELQVKATCACGPAKVACPAGMYCHAFANACTR*
Ga0070713_1001434472	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLKTFAVALLATAMSVGLAEAKGHMAKPKAPAPCQTEQQAAATCVCGPAKNVCQKGQWCHAFVSACTQ*
Ga0070711_1010785482	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MLRIFAVTLLATATSVGWAEAKGHKPKALSPCQSELQVKATCACGPAKVACSAGMYCHAFANACTQ*
Ga0070708_1019939212	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLRIFAIALFATVMSVGLADAKGHKPKALSYCQNAQQTKDTCACGPAKTVCPKGMWCHS
Ga0066708_102445113	3300005576	Soil	MTKICTIALLATAMSVGFAEAKGHMSKAKALSPCQTEQQAKAACACGPAKTPCQSGMWCHAFTNACTR*
Ga0066903_1012072343	3300005764	Tropical Forest Soil	MLKTFAVALLATAMSVGLAEAKGPKAKPKALSPCQTDQQAKDTCACGPAKIVCQKGMWCHAFVNACTR*
Ga0066903_1019425211	3300005764	Tropical Forest Soil	MLRTFGIALLVTAMSVGLAEAKGAKAKAPPKALAYCQTDQPAAATCACGPAKVTCPKGAWCHAFSSTCRP*
Ga0066903_1024321081	3300005764	Tropical Forest Soil	MLRTFGIALLVTAMSVGLAEAKGAKAKAPPKSLAYCQTDQPAKDKCACGPAKVTCPKGMWCHAFSSTCSP*
Ga0066903_1026114771	3300005764	Tropical Forest Soil	MLRIFAVTTLAIAMSVGLADAKGHKHKAAPKASLAYCQTDQQAKADCACGPAKTPCQKGMWCHAFASVCRP*
Ga0066903_1043976841	3300005764	Tropical Forest Soil	MLRTFAIALLATAMSVGLADAKGHKAPPKTSLAPCATEQQVKTTCACGPAKITCPAGAYCHAFMNACTQ*
Ga0075024_1003013931	3300006047	Watersheds	MLKTFAVALLATTMSVGLAEAKGAKATPKPPPPCDMEQQTNATCLCGPGKMLCPKGMFAT
Ga0070765_1004247842	3300006176	Soil	MLKTFTVALLATAMSFALSFGLAEAKGHMPKQKAPPTCQTEAQAGATCACGPAKKLCQKGQWCHAFINACSQ*
Ga0079222_101071972	3300006755	Agricultural Soil	MLKTFAVALLATAMSVGLAEAKGHMAKPKAPAPCQTEHQAAATCVCGPAKNVCQKGQWCHAFVSACTQ*
Ga0079222_103332191	3300006755	Agricultural Soil	MLRIFAVTLLAISTSVSWAEAKGHKAPPKALSPCQTELQVKATCACGPAKVACPAGMYCHAFANACTR*
Ga0066660_103393632	3300006800	Soil	MLKIFAIALLATAMSVGLAQAKGHMSKQKAPSYCQTEQQTKATCACGPAKTLCQTGMWCHAFTSACTR*
Ga0075425_1009340142	3300006854	Populus Rhizosphere	MLKTFAVALLATAMSVGLAEAKGHMAKPKAPAPCQTEHQAAATCVCGPAKNVCQKGQGCHAFVSACTQ*
Ga0073928_100577693	3300006893	Iron-Sulfur Acid Spring	MLKTFTVALLATAMSFALSFGLAEAKGHMPKQKAPPSCQTEVQASATCACGPAKTLCQKGQWCHAFVNACSK*
Ga0079219_101340133	3300006954	Agricultural Soil	MLRTFAIALLATAMSVGLADAKGHKAPPPKASLAPCATEQQVKTTCACGPAKIACPAGAYCHAFMNACTR*
Ga0099827_107214381	3300009090	Vadose Zone Soil	MLKIFAIALLATTMSVGLAEAKGHKQKTPPKASLAYCQTDQEAKATCACGPAKMTCQKGMWCHAFTSACTR*
Ga0126384_100422973	3300010046	Tropical Forest Soil	MLKTFGIALLVAAMSVGLAEAKGAKAKAPPKALAYCQTDQPAKDTCACGPAKVTCPKGMWCHAFSSTCSP*
Ga0126373_100587272	3300010048	Tropical Forest Soil	MLRIFTVAALALSMSVGLAEAKGRAKPKALSPCQTEQQVKATCACGPAKTTCAAGAYCHAFVSACTR*
Ga0126373_112714281	3300010048	Tropical Forest Soil	MLRTFGIALLVTAMSVGLADAKGHKAPAKASLAPCATEQKVTATCACGPAKIPCPAGAYCHAFMNACTR*
Ga0126370_100644552	3300010358	Tropical Forest Soil	MLRTFAIALLATAMSVGVAHAKGHKAAPKASLPQCQTEQQAKAKCACGPAKVACPAGMWCHAFVSACTR*
Ga0126376_102854961	3300010359	Tropical Forest Soil	GTMLRTFAIALLATAMSVGLAYAKWHKASAKASLSPCATEQKVTATCACGPAKIPCPAGAYCHAFMNACTR*
Ga0126378_115986381	3300010361	Tropical Forest Soil	MLKTFAVALLATAMSVGVAGAKGHMAKPKALSPCQTEQQVKATCACGPAKITCQPGMYCHAFGNACTR*
Ga0126379_106618391	3300010366	Tropical Forest Soil	SREEETMLRIFAIALLATAMSVGLADAKGRKAPPKASLAPCATEQQVKTACACGPAKIACPAGMYCHAFINSCTR*
Ga0126379_116426241	3300010366	Tropical Forest Soil	REEETMLRTFVIALLATAMSVSLADAKGHKPKAPPKALPYCQNAQQTKDTCACGPAKVVCPKGMWCHSFISTCRP*
Ga0120139_10857081	3300012019	Permafrost	MLKTFTVALLETAMSFALSFGLAEAKGHMPKQKAPPTCQSEVQASATCACGPAKTLCQKGQWCHAFINACSK*
Ga0153922_11131861	3300012181	Attine Ant Fungus Gardens	MLKTFAITMLTIGMSVGLAQAKGSMHKRKAPPPCQMEQQASATCACGPAKTLCQKGQWCHGFINVCTQ*
Ga0137364_100651151	3300012198	Vadose Zone Soil	MLRIFAIALLATAMSVGLADAKGHKHKAPPKASLAYCQTDQPAKANCACGPAKMPCPQGMWCHAFASACTR*
Ga0137364_101745082	3300012198	Vadose Zone Soil	MMKTFTIALLATAMSVGFAEAKGHMAKPKALSPCQTEQQAKATCACGPAKTPCQSGMWCHAFANACTR*
Ga0137383_109565022	3300012199	Vadose Zone Soil	MMRTFAIALLATAMSIGLADAKGHKAPPKASLAPCATEQQVKTTCACGPAKIACPAGMYCHAFANSCTP*
Ga0137380_108624461	3300012206	Vadose Zone Soil	MLKTFAIALLATAISVGFAEAKGHKQKALSPCENGRAATATCACGPAKMVCPKGMWCQAFVSACTQ*
Ga0137381_102093353	3300012207	Vadose Zone Soil	MMRTFAIALLATAMSIGLADAKGHKAPPKASLAPCATEQQVKTTCACGPAKIACPAGMYC
Ga0137379_107974881	3300012209	Vadose Zone Soil	MMRTFAIALLATAMSIGLADAKGHKAPPKASLAPCATEQQVKTTCACGPAKIACPAGMY
Ga0137387_104624751	3300012349	Vadose Zone Soil	MLKIFAIALLATTMSVGLAEAKGHKQKTPPKASLAYCQTDQEAKATCACGPAKMTCQKGMWCHAFTGGCTR*
Ga0137371_100291104	3300012356	Vadose Zone Soil	MLKIFAIALLATTMSVGLAEAKGHKQKTPPKASLAYCQTDQEAKATCSCGPAKMTCQKGMWCHACTRACTR*
Ga0132258_102344922	3300015371	Arabidopsis Rhizosphere	MLKTFAVALLATAMSVGLAEAKGPKATPKALSPCQTDQQAKDNCACGPAKIACQKGMWCHAFVNACTR*
Ga0182036_115197781	3300016270	Soil	MLRIFAIALLATAMSVGLADAKGRKAPPKASLAPCATEQQVKTACACGPAKIACPA
Ga0182041_111322681	3300016294	Soil	LLAITMSVGLAEAKEHKLKTLPYCQNEEQTKETCACGPAKTVCPKGMWCHAFASICRP
Ga0182041_111789391	3300016294	Soil	MLRTFGIALLVTAMSVGLADAKGHKAPPKASLAPCATEQQVKTTCACGPAKIPCPAGAYCHAF
Ga0182033_109424971	3300016319	Soil	MLRIFAVAVLALSMSVGLAEAKGHMAKPKALSPCPTEQQAKDTCACGPAKTVCPKGMYCHAFISACRP
Ga0182035_106615011	3300016341	Soil	MLKTYAVALLAITMSVGLAEAKEHKLKTLPYCQNEQQTKETCACGPAKTVCPKGM
Ga0182040_102805972	3300016387	Soil	MLKTYAVALLAITMSVGLAEAKEHKLKTLPYCQNEQQTKETCACGPAKTVCPKGMWGHAFARICRP
Ga0182039_104596753	3300016422	Soil	MLRTFAIALLATAMSVGLAEAKGHKAPPKSLAPCATEQKVTATCACGPAKIPCPAGAYCHAFMNACT
Ga0182038_108264662	3300016445	Soil	MLRIFAVAVLALSMSVGLAEAKGHMAKPKALSPCPTEQQAKDTCACGPAKTVCP
Ga0182038_116780961	3300016445	Soil	MLRTFGIALLVTAMSVGLADAKGHKAPAKASLAPCATEQQVKTTCACGPAKIPCPAGAYCHA
Ga0187777_105342001	3300017974	Tropical Peatland	MLRVVVLGLLAIAMSIGFAEAKGHMAKQASLPYCQTEQQTKAPCGCGPGKMLCPKGMWCHAFTSTCRM
Ga0187765_100617995	3300018060	Tropical Peatland	MLRIVVLDLLAIAMSIGFAEAKGHMAKQASLPYCQTEQQTKAPCGCGPGKMLCPKGMWCHAFTSTCRM
Ga0066667_105527152	3300018433	Grasslands Soil	MMKTVTIALLATAMSVGFAEAKGHMAKPKALSPCQTEQQTKAACACGPAKMPCQSGMWCHAFGNACTR
Ga0066669_123392001	3300018482	Grasslands Soil	MLRIFAIALLATAMSVGLADAKGHKHKAPAKASLAYCQTDQPAKANCACGPAKMPCPQGM
Ga0193751_100069816	3300019888	Soil	MLKTFTVALLATAMSFALSFGSAEAKGHMSKQKAPPSCQTEVQASATCACGPAKTLCQKGQWCHAFMNACSK
Ga0193751_100353913	3300019888	Soil	MLKTFAIALLATAISVGFAEAKGHKQKTPPKASLAYCQTDLEAKATCACGPAKMLCPKGMWCHAFTSTCTR
Ga0193751_10435044	3300019888	Soil	MLKTFTVALLATAMSFALSFGLAEAKGHMPKQKAPPSCQSEVQASATCACGPAKTLCQKGQWCHAFMNACSK
Ga0210383_110084981	3300021407	Soil	MLRIFAVALLATTMSVGLAEAKGKPKASLAPCQSELQVKGTCACGPAK
Ga0126371_100224382	3300021560	Tropical Forest Soil	MLKTYAVAAMSVGLAEAKGHMAKPKTLPYCQNEQQTKETCACGPAKTVCPKGMWCHAFASTCRP
Ga0126371_116999671	3300021560	Tropical Forest Soil	SREEETMLRIFAIALLATAMSVGLADAKGRKAPPKASLAPCATEQQVKTACACGPAKIACPAGMYCHAFINSCTR
Ga0126371_121022041	3300021560	Tropical Forest Soil	MLKTYAVALLAITMSVGLAEAKGHKPKTLPYCQNEQQTKETCACGPAKTVCPKGMWCHAFASICRP
Ga0126371_124653172	3300021560	Tropical Forest Soil	MLRTFAIALLATSMSVGLADAKGHKAPPKTLAPCATEQKVTATCACGPAKIACPAGAYCHAFMNACTR
Ga0126371_125087721	3300021560	Tropical Forest Soil	MLKTFAVVLLATAMSVGLAEAKGHKAKPKALSPCQTEQQAKDNCACGPAKVACQKGMYCHAFANACTR
Ga0126371_129184613	3300021560	Tropical Forest Soil	MLKTFAVALLATAMSVGVAGAKGHMAKPKALSPCQTEQQAKDTCACGPAKIACQKGMYCH
Ga0212123_102248792	3300022557	Iron-Sulfur Acid Spring	MLRTFAVGLLAIGMSVGMAQAKGHKPKALSYCETDQQLKGTCACGPAKMTCPKGMWCHAFTSACTR
Ga0212123_102309943	3300022557	Iron-Sulfur Acid Spring	MLKTFTVALLATAMSFALSFGLAEAKGHMPKQKAPPSCQTEVQASATCACGPAKTLCQKGQWCHAFVNACSK
Ga0207700_120251851	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLKTFAVALLATAMSVGVAGAKGHMAKPKALSPCQTEQQAKDNCACGPAKIACQKGMYCHAFANACTR
Ga0209577_104214982	3300026552	Soil	MLKIFAIALLATAMSVGLAQAKGHMSKQKAPSYCQTEQQTKATCACGPAKTLCQTGMWCHAFTSACTR
Ga0209325_10078413	3300027050	Forest Soil	LAQIKFRCLTREEQNMLRIFAVTLLATVMSVGWAEAKGHKPKALSPCQTELQVKATCACGPAKVACPAGMYCHAFANACTR
Ga0209178_11102621	3300027725	Agricultural Soil	MLRIFAVTLLAISTSVSWAEAKGHKAPPKALSPCQTELQVKATCACGPAKVACPAGMYCHAFANACTR
Ga0209074_100171803	3300027787	Agricultural Soil	MLRIFAVTLLATVMSVGWAEAKGHKPKALSPCQTELQVKATCACGPAKVACPAGMYCHAFANACTR
Ga0209465_100057365	3300027874	Tropical Forest Soil	MLKTYAVAAMSVGLAEAKGHMAKPKTLPYCQNEQQTKGTCACGPAKTVCPKGMWCHAFASTCRP
Ga0209465_100209302	3300027874	Tropical Forest Soil	MLRIFAVAVLALSMSVGLADAKGHKAPPKALAPCATEQQVKATCACGPAKIACPAGAYCHAFMNACTR
Ga0209465_103764821	3300027874	Tropical Forest Soil	MLRIFAIALLATAMSVGLADAKGRKAPPKASLAPCATEQQVKTACACGPAKIACPAGMYCHAFIN
Ga0209069_102011382	3300027915	Watersheds	MLKTFAVALLATTMSVGLAEAKGAKATPKPPPPCDMEQQTNATCLCGPGKMLCPKGMFATPS
Ga0170834_1094643102	3300031057	Forest Soil	MMKTVTIALLATAMSVGFAEAKGHMAKAKALSPCQTEQQAKATCACGPAKTPCQSGMWCHAFTNACTR
Ga0170824_1082933571	3300031231	Forest Soil	MLRIFAITLFATVMSVGLADAKGHKPKALSYCQNAQQTKDTCACGPAKMVCPKGMWCHSFASTCRT
Ga0170824_1100766722	3300031231	Forest Soil	MMKTVTIALLATAMFVGFAEAKGHMAKPKALSPCQTEQQTKAACACGPAKMPCQSGMWCHAFANACTR
Ga0170824_1159354482	3300031231	Forest Soil	MMKICTIALLATAMSVGFAEAKGHMAKAKALSPCQTEQQAKATCACGPAKTPCQSGMWCHAFTNACTR
Ga0308194_101511951	3300031421	Soil	MLRTFAIALLATAMSVGLADAKGHKAPPKALPYCQNEQQTKDTCACGPAKMVCPKGMFCHSFASACTR
Ga0170820_102480175	3300031446	Forest Soil	MMKTFTIALLATAMSVGFAEAKGHMSKPKALSPCQTEQQTKATCACGPAKTLCQNGMWCHAFTSACTR
Ga0170820_130346212	3300031446	Forest Soil	MMKTVTIALLATAMSVGFAEAKGHMAKPKALSPCQTEQQTKAACACGPAKMPCQSGMWCHAFANACTR
Ga0318516_108230091	3300031543	Soil	MLKTYAVALLAITMSVGLAEAKEHKLKTLPYCQNEQQTKETCACGPAKTVCPKGMWCHAFASICRP
Ga0318515_101314222	3300031572	Soil	MLKAFGIALLVTAMSVGLAEAKGAKAPPKALAYCQTDQPAAATCACGPAKVTCPKGAWCHAFSSTCRP
Ga0310813_115515052	3300031716	Soil	MLKTVAVALLATAMSVGVAGAKGHMAKPKALSPCQTEQQAKDNCACGPAKIACQKGMYCHAFANACTR
Ga0318543_101861551	3300031777	Soil	MLRTFAIALLATAMSVGLADAKGHKAPAKASLPPCATEQKVTATCACGPAKIPCPAGAYCHAFMNACTR
Ga0318550_105445901	3300031797	Soil	AVALLAITMSVGLAEAKEHKLKTLPYCQNEQQTKETCACGPAKTVCPKGMWCHAFASICR
Ga0310917_100749732	3300031833	Soil	MLKTYAVALLAITMSVGLAEAKEHKLKTLPYCQNEQQTKETCACGPAKTVCPKGMWGHAFASICRP
Ga0310917_102716062	3300031833	Soil	MLRTFGIALLVTAMSVGLADAKGHKAPAKASLAPCATEQKVTATCACGPAKIPCPAGAYCHAFMNACTR
Ga0306919_106230391	3300031879	Soil	LLATAMSVGLADAKGHKAPAKASLAPCATEQKVTATCACGPAKIPCPAGAYCHAFMNACT
Ga0306925_103998373	3300031890	Soil	MLRTFGIALLVTAMSVGLAEAKGAKAKAPPKALAYCQTDQPAKDTCACGPAKVPCPKGAWCHAFSSTCRP
Ga0306925_109858372	3300031890	Soil	MLRTFGIALLVTAMSVGLADAKGHKAPPKALAPCATEQQVKATCACGPAKIACPAGAYCHAFMNACTR
Ga0306925_122390381	3300031890	Soil	MLRIFAIALLATAMSVGLADAKGRKAPPKASLAPCATEQQVKTACACGPAKIACPAGLYCHAFINSCTP
Ga0306923_116034782	3300031910	Soil	MLRTFGIALLVTAMSVGLADAKGHKAPPKASLAPCATEQQVKTTCACGPAKIPCPAGAYCHA
Ga0306921_109968533	3300031912	Soil	MLKTYAVALLAITMSVGLAEAKGHKPKTLRYCQNEQQTKETCACGPAKTVCPKGMWCHAFASICRP
Ga0310916_116636821	3300031942	Soil	IALLATAMSVGLADAKGHKAPPKASLAPCATEQQVKATCACGPAKIACPAGAYCHAFMNACTR
Ga0306926_101190404	3300031954	Soil	MLRIFTVSVLALSMSVGLAEAKGRANPKALSPCQTEQQTKATCACGPAKTACAAGAYCHAFVSACTR
Ga0306926_111841781	3300031954	Soil	MLRIFAIALLATAMSVGLADAKGRKAPPKASLAPCATEQQVKTACACGPAKIACPAGMYCHAFINSCTP
Ga0306926_120068091	3300031954	Soil	MLKTFTIVLLATVMSVGLAEAKGARHKVAPKALPVCQTEQQAKDACACGPAKTMCAKGMYCHAFISACRP
Ga0306920_1001920783	3300032261	Soil	MVSLPSLREEETMPRTFAIALLATAMSVGLADAKGHKAPAKASLPPCATEQKVTATCACGPAKIPCPAGAYCHAFMNACTR
Ga0310914_100930667	3300033289	Soil	MLRIFALAVLALSMSVGLAEAKGHMAKPKALSPCPTEQQAKDTCACGPAKTVCP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087499

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences