Metagenome / Metatranscriptome Family F087545

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087545
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	42 residues
Representative Sequence	FLAPNFIFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE
Number of Associated Samples	91
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.94 %
% of genes near scaffold ends (potentially truncated)	95.45 %
% of genes from short scaffolds (< 2000 bps)	88.18 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.091 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.091 % of family members)
Environment Ontology (ENVO)	Unclassified (35.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.727 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 32.35% β-sheet: 0.00% Coil/Unstructured: 67.65%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF16917	BPL_LplA_LipB_2	24.55
PF03401	TctC	1.82
PF12727	PBP_like	1.82
PF13187	Fer4_9	0.91
PF01047	MarR	0.91
PF09278	MerR-DNA-bind	0.91
PF03466	LysR_substrate	0.91
PF00903	Glyoxalase	0.91
PF12840	HTH_20	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.82
COG0789	DNA-binding transcriptional regulator, MerR family	Transcription [K]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.09 %
Unclassified	root	N/A	20.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.09 %
Unclassified	root	N/A	20.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.09 %
Unclassified	root	N/A	20.91 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	76.36 %
Unclassified	root	N/A	20.91 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	42.73 %
Unclassified	root	N/A	20.91 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	26.36 %
Unclassified	root	N/A	20.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.36 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	2.73 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.55 %
Pseudorhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes	2.73 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.91 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	2.73 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.91 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.91 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.91 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	2.73 %
Bradyrhizobium sp. NAS80.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	0.91 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.91 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573004\|GZGWRS402GFK3I	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	505	Open in IMG/M
3300000956\|JGI10216J12902_106317959	All Organisms → cellular organisms → Bacteria → Proteobacteria	623	Open in IMG/M
3300004633\|Ga0066395_10669962	All Organisms → cellular organisms → Bacteria → Proteobacteria	613	Open in IMG/M
3300005164\|Ga0066815_10055647	All Organisms → cellular organisms → Bacteria → Proteobacteria	663	Open in IMG/M
3300005332\|Ga0066388_101350162	All Organisms → cellular organisms → Bacteria → Proteobacteria	1234	Open in IMG/M
3300005339\|Ga0070660_101589617	All Organisms → cellular organisms → Bacteria → Proteobacteria	556	Open in IMG/M
3300005406\|Ga0070703_10299216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	670	Open in IMG/M
3300005713\|Ga0066905_100757534	All Organisms → cellular organisms → Bacteria → Proteobacteria	838	Open in IMG/M
3300005764\|Ga0066903_105918099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	641	Open in IMG/M
3300006051\|Ga0075364_10490633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	840	Open in IMG/M
3300006057\|Ga0075026_100429599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	748	Open in IMG/M
3300006057\|Ga0075026_101075870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504	Open in IMG/M
3300006175\|Ga0070712_101155448	All Organisms → cellular organisms → Bacteria → Proteobacteria	673	Open in IMG/M
3300006177\|Ga0075362_10741326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300006177\|Ga0075362_10767111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	506	Open in IMG/M
3300006196\|Ga0075422_10372007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	627	Open in IMG/M
3300006880\|Ga0075429_101329203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	626	Open in IMG/M
3300009088\|Ga0099830_10003075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9042	Open in IMG/M
3300009090\|Ga0099827_10395611	Not Available	1180	Open in IMG/M
3300009176\|Ga0105242_13070087	All Organisms → cellular organisms → Bacteria → Proteobacteria	517	Open in IMG/M
3300010043\|Ga0126380_11781428	Not Available	556	Open in IMG/M
3300010046\|Ga0126384_10865211	All Organisms → cellular organisms → Bacteria → Proteobacteria	814	Open in IMG/M
3300010046\|Ga0126384_12160864	Not Available	535	Open in IMG/M
3300010047\|Ga0126382_10410674	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1060	Open in IMG/M
3300010047\|Ga0126382_12014106	Not Available	550	Open in IMG/M
3300010303\|Ga0134082_10206264	All Organisms → cellular organisms → Bacteria → Proteobacteria	806	Open in IMG/M
3300010358\|Ga0126370_11187678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	709	Open in IMG/M
3300010360\|Ga0126372_10879025	All Organisms → cellular organisms → Bacteria → Proteobacteria	896	Open in IMG/M
3300010361\|Ga0126378_12781653	Not Available	559	Open in IMG/M
3300010361\|Ga0126378_12922721	Not Available	545	Open in IMG/M
3300012096\|Ga0137389_11845052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	500	Open in IMG/M
3300012203\|Ga0137399_11416619	Not Available	581	Open in IMG/M
3300012358\|Ga0137368_10051685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3479	Open in IMG/M
3300012958\|Ga0164299_11063484	Not Available	602	Open in IMG/M
3300012958\|Ga0164299_11368426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	545	Open in IMG/M
3300012971\|Ga0126369_10475893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1303	Open in IMG/M
3300015372\|Ga0132256_100273580	All Organisms → cellular organisms → Bacteria → Proteobacteria	1765	Open in IMG/M
3300016319\|Ga0182033_10280301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1367	Open in IMG/M
3300016341\|Ga0182035_10603981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	948	Open in IMG/M
3300016404\|Ga0182037_10370377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1172	Open in IMG/M
3300018073\|Ga0184624_10426895	All Organisms → cellular organisms → Bacteria → Proteobacteria	585	Open in IMG/M
3300018077\|Ga0184633_10536212	All Organisms → cellular organisms → Bacteria → Proteobacteria	562	Open in IMG/M
3300018422\|Ga0190265_12592429	Not Available	605	Open in IMG/M
3300018465\|Ga0190269_10007990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4774	Open in IMG/M
3300018465\|Ga0190269_10671412	All Organisms → cellular organisms → Bacteria → Proteobacteria	717	Open in IMG/M
3300019362\|Ga0173479_10529907	All Organisms → cellular organisms → Bacteria → Proteobacteria	601	Open in IMG/M
3300021073\|Ga0210378_10148917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	904	Open in IMG/M
3300021344\|Ga0193719_10202581	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300021560\|Ga0126371_11959063	Not Available	704	Open in IMG/M
3300025919\|Ga0207657_11176001	All Organisms → cellular organisms → Bacteria → Proteobacteria	584	Open in IMG/M
3300025927\|Ga0207687_11184006	All Organisms → cellular organisms → Bacteria → Proteobacteria	657	Open in IMG/M
3300025937\|Ga0207669_10920844	All Organisms → cellular organisms → Bacteria → Proteobacteria	731	Open in IMG/M
3300026304\|Ga0209240_1124125	All Organisms → cellular organisms → Bacteria → Proteobacteria	875	Open in IMG/M
3300026310\|Ga0209239_1375336	Not Available	500	Open in IMG/M
3300026334\|Ga0209377_1309124	Not Available	527	Open in IMG/M
3300026356\|Ga0257150_1075489	Not Available	512	Open in IMG/M
3300026482\|Ga0257172_1024639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1071	Open in IMG/M
3300026489\|Ga0257160_1102694	Not Available	515	Open in IMG/M
3300027610\|Ga0209528_1112151	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300027862\|Ga0209701_10477874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	681	Open in IMG/M
3300027866\|Ga0209813_10060488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1208	Open in IMG/M
3300027874\|Ga0209465_10141705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1191	Open in IMG/M
3300027874\|Ga0209465_10438269	All Organisms → cellular organisms → Bacteria → Proteobacteria	654	Open in IMG/M
3300027882\|Ga0209590_10432874	Not Available	850	Open in IMG/M
3300027903\|Ga0209488_10152276	All Organisms → cellular organisms → Bacteria → Proteobacteria	1746	Open in IMG/M
3300028047\|Ga0209526_10528379	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300028707\|Ga0307291_1056913	All Organisms → cellular organisms → Bacteria → Proteobacteria	946	Open in IMG/M
3300028755\|Ga0307316_10235591	All Organisms → cellular organisms → Bacteria → Proteobacteria	663	Open in IMG/M
3300031549\|Ga0318571_10127745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	859	Open in IMG/M
3300031549\|Ga0318571_10323279	Not Available	585	Open in IMG/M
3300031561\|Ga0318528_10628431	Not Available	575	Open in IMG/M
3300031561\|Ga0318528_10708224	All Organisms → cellular organisms → Bacteria → Proteobacteria	539	Open in IMG/M
3300031640\|Ga0318555_10510505	All Organisms → cellular organisms → Bacteria → Proteobacteria	651	Open in IMG/M
3300031668\|Ga0318542_10098470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	1408	Open in IMG/M
3300031680\|Ga0318574_10185669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1191	Open in IMG/M
3300031744\|Ga0306918_10911292	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
3300031747\|Ga0318502_10186377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1196	Open in IMG/M
3300031748\|Ga0318492_10410895	All Organisms → cellular organisms → Bacteria → Proteobacteria	712	Open in IMG/M
3300031748\|Ga0318492_10411655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	712	Open in IMG/M
3300031770\|Ga0318521_10022342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2975	Open in IMG/M
3300031770\|Ga0318521_10028491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2709	Open in IMG/M
3300031771\|Ga0318546_11114069	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300031777\|Ga0318543_10226782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	831	Open in IMG/M
3300031798\|Ga0318523_10031708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	2398	Open in IMG/M
3300031819\|Ga0318568_10516711	All Organisms → cellular organisms → Bacteria → Proteobacteria	744	Open in IMG/M
3300031833\|Ga0310917_10023556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3567	Open in IMG/M
3300031833\|Ga0310917_10641175	All Organisms → cellular organisms → Bacteria → Proteobacteria	720	Open in IMG/M
3300031833\|Ga0310917_10818365	All Organisms → cellular organisms → Bacteria → Proteobacteria	628	Open in IMG/M
3300031879\|Ga0306919_10146449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1718	Open in IMG/M
3300031880\|Ga0318544_10183070	Not Available	807	Open in IMG/M
3300031912\|Ga0306921_11149135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	867	Open in IMG/M
3300031912\|Ga0306921_11677813	All Organisms → cellular organisms → Bacteria → Proteobacteria	688	Open in IMG/M
3300031941\|Ga0310912_10003035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9702	Open in IMG/M
3300031941\|Ga0310912_10320380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1201	Open in IMG/M
3300031942\|Ga0310916_10326484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1302	Open in IMG/M
3300031944\|Ga0310884_11085554	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300031954\|Ga0306926_11356490	All Organisms → cellular organisms → Bacteria → Proteobacteria	827	Open in IMG/M
3300031954\|Ga0306926_11559551	All Organisms → cellular organisms → Bacteria → Proteobacteria	759	Open in IMG/M
3300032025\|Ga0318507_10225336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	811	Open in IMG/M
3300032035\|Ga0310911_10557790	All Organisms → cellular organisms → Bacteria → Proteobacteria	664	Open in IMG/M
3300032039\|Ga0318559_10142993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	1083	Open in IMG/M
3300032068\|Ga0318553_10061912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1860	Open in IMG/M
3300032090\|Ga0318518_10027017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2592	Open in IMG/M
3300032090\|Ga0318518_10684031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	522	Open in IMG/M
3300032174\|Ga0307470_10367271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1005	Open in IMG/M
3300032261\|Ga0306920_101468662	Not Available	975	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.09%
Host-Associated	Host-Associated	10.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.64%
Plants	Host-Associated → Plants	10.91%
Aquatic	Environmental → Aquatic	5.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.27%
Sediment	Environmental → Aquatic → Sediment	3.64%
Roots	Host-Associated → Plants → Roots	3.64%
Freshwater	Environmental → Aquatic → Freshwater	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.55%
Loam	Environmental → Terrestrial → Soil → Loam	9.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.64%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.64%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	39.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.64%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.18%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.45%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	3.64%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.82%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.91%
River Water	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.91%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573004	Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009257	Microbial communities of water from Amazon river, Brazil - RCM22	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FG2_08344340	2189573004	Grass Soil	LAPSFIYSIVSTPNAFAERIRVETMKWGRVIREANVKVE
JGI10216J12902_1063179592	3300000956	Soil	FRDKFLTPNFIFPIVSSQEAFAERIRRESEKWGKVIRDANVKVE*
Ga0066395_106699621	3300004633	Tropical Forest Soil	EKFLAPNFIFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE*
Ga0066815_100556471	3300005164	Soil	REKFLAPNFIFSIVSSPEAFAERIRRESAKWGKVIRDANIKAE*
Ga0066388_1013501621	3300005332	Tropical Forest Soil	KFLAPNVIFSIAGPPEQFADRIRVDYAKWGKVIRDANVKVE*
Ga0070660_1015896172	3300005339	Corn Rhizosphere	FLAPNFIFPIVSPPEEFAERIRRESEKWGKVIRDANVKVE*
Ga0070703_102992161	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	FLAPNFIFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE*
Ga0066905_1007575341	3300005713	Tropical Forest Soil	PAFRDKFLAPNFIFSVVSSPDAFAQRIRSESAKWGQVIRDANVRVE*
Ga0066903_1059180992	3300005764	Tropical Forest Soil	APNFIFSIVSSPEAFAERIRLESAKWGKVIRGANIKAE*
Ga0075364_104906331	3300006051	Populus Endosphere	IFSVVSSPEAFAERITRESAKWGQVIRDANVRVE*
Ga0075026_1004295991	3300006057	Watersheds	FRDRFLAPSFIYSIAGPPDGFAERIRTDLAKWGKVIRETKVQVE*
Ga0075026_1010758702	3300006057	Watersheds	PNFIFPIVSSPEAFAERIRRESAKWGKIIRDANVRVE*
Ga0070712_1011554481	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LAPNMIFSIAGSPEEFAARIRTDYVKWGKVIRDANVKVE*
Ga0075362_107413261	3300006177	Populus Endosphere	NFIFPIVSAPEAFAERIRRESEKWGKVIRDANVKVE*
Ga0075362_107671112	3300006177	Populus Endosphere	DGEDEVRREKFLAPNFIFSVVSSPEAFAERIRLESAKWEQVIRDANVRVE*
Ga0075422_103720071	3300006196	Populus Rhizosphere	IFPIVSSPDAFAERIRRESEKWGKVIRDANVRVE*
Ga0075429_1013292032	3300006880	Populus Rhizosphere	DKFLAPNFIYSIVSSPEAFAERIRLDSAKWGKVIRDANIKVE*
Ga0099830_1000307510	3300009088	Vadose Zone Soil	FIFSIATPPEAFAERIRSESAKWGKVIRDANIKVE*
Ga0099827_103956113	3300009090	Vadose Zone Soil	QRIFNEAGFRDRFLTPNFIYSIVSSPEAFAERMRLDSEKWGKVIRAAKVKVE*
Ga0105242_130700872	3300009176	Miscanthus Rhizosphere	DDPTFRDKFLTPNFIFPIVTSQEAFAERIRRESEKWGKVIRDANVKVE*
Ga0103869_100501403	3300009257	River Water	VGFVALGSSPEELAAVMRSDLAKWGKVIRANNIKPE*
Ga0126380_117814282	3300010043	Tropical Forest Soil	LAPNFIFSIVSSPEAFAERIRLESAKWGKVIHDANIKAE*
Ga0126384_108652111	3300010046	Tropical Forest Soil	FREKFLAPNFIFSIVSSPEAFAERIRRESAKWGKVIRDANIRAE*
Ga0126384_121608642	3300010046	Tropical Forest Soil	REKFLAPNFIFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE*
Ga0126382_104106741	3300010047	Tropical Forest Soil	FINSIVSSPEDFGARIRADSAKWGKVIRDASIKAE*
Ga0126382_120141062	3300010047	Tropical Forest Soil	KFLTPNFIFSIASAPEAFAERIRMESGKWGKVIRDANLKAE*
Ga0134082_102062642	3300010303	Grasslands Soil	FLAPNFIFSITSSPEAFAERIRIESAKWGKLIRDANLKAE*
Ga0126370_111876781	3300010358	Tropical Forest Soil	KFLAPNFIFSIVSSPEAFAERIRLESAKWGKVIRGANIKAE*
Ga0126376_103263621	3300010359	Tropical Forest Soil	SFIDSIVSSPEDFAARIRADSAKWGKVIRAANIKAE*
Ga0126376_113414871	3300010359	Tropical Forest Soil	RDRVLAPSCIYSIDSSPEEFTARIRSDSAKWGKVIREANIKAE*
Ga0126372_108790251	3300010360	Tropical Forest Soil	IFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE*
Ga0126378_127816532	3300010361	Tropical Forest Soil	EKFLAPNFIFSIVSSPEAFAERIRLESAKWGKVIHDANIKAE*
Ga0126378_129227212	3300010361	Tropical Forest Soil	EKFLAPNFIFSIVSPPEAFAERIRLESAKWGKVIRDANIKVE*
Ga0126377_109588833	3300010362	Tropical Forest Soil	PVLRDRVLAPSFIYSIASSPEQFTARIQSDSAKWGKVIREANIKAE*
Ga0137389_118450522	3300012096	Vadose Zone Soil	GFREKFLASNFIYSIVSSPEAFAERIRLDSAKWGKVIRDAGVKVE*
Ga0137399_114166191	3300012203	Vadose Zone Soil	IFPIVSSPEAFAERIRRESAKWGKIIRDANVRVE*
Ga0137368_100516851	3300012358	Vadose Zone Soil	PNFIFSITSSPEAFAERIRIESAKWGKLIRDANLKAE*
Ga0164299_110634842	3300012958	Soil	PSFIFSIASAPEVFAARIRSEWAKWGEVIRDAGLEPE*
Ga0164299_113684261	3300012958	Soil	FIFPIVSSPETFAERIRRESEKWGKVIRDANVKVE*
Ga0126369_104758931	3300012971	Tropical Forest Soil	EKFLAPNFIFSIVSSPEAFAERIRLESAKWGKVIRGANIKAE*
Ga0132256_1002735801	3300015372	Arabidopsis Rhizosphere	IFPIVTSQEAFAERIRRESEKWGKVIRDANVKVE*
Ga0182033_102803011	3300016319	Soil	AFREKFLAPNFIFSIVSSPEVFAERIRLESAKWGKVIRDANIKAE
Ga0182035_106039811	3300016341	Soil	LTPNFIFSIVSSPEAFAQRIRSESAKWGKVIRDAGVKIE
Ga0182037_103703771	3300016404	Soil	REKFLAPNFIFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE
Ga0184624_104268952	3300018073	Groundwater Sediment	FRDKFLAPNFIYSIVSSPEAFAERVRLDSAKWGKVIRDANIKVE
Ga0184633_105362121	3300018077	Groundwater Sediment	AFREKFLAPNFIFPNVSSPEAFAERIRRESAKWGKIIRDANVRVE
Ga0190265_125924291	3300018422	Soil	VLEPSFIFSIASSPDDFAERMKRDSIKWGKVIRDANIKAE
Ga0190269_100079901	3300018465	Soil	TQKIFNDPAFQEKYLAKSFIFSIASSPATFAERLRADSERWGKVIRDAKVKVE
Ga0190269_106714122	3300018465	Soil	FIFPIVSSQEAFAERIRRESEKWGKVIRDANVKVE
Ga0173479_105299072	3300019362	Soil	FLTPNFIFSIVSSPDAFAERIRRESEKWGKVIRDANVRVE
Ga0210378_101489173	3300021073	Groundwater Sediment	GFRDKFLAPNFIYSIVSSPEAFAERIRLDSAKWGKVIRDANIKVE
Ga0193719_102025811	3300021344	Soil	ETQRIFSDAQFREKILAPNFIYSIVSPPAVFAERIRLETAKWGKIIREANVKVE
Ga0126371_119590632	3300021560	Tropical Forest Soil	LAPNFIFSIVSPPDAFAKRIRAESAKWGKLIRDTGLKME
Ga0207657_111760011	3300025919	Corn Rhizosphere	FLAPNFIFPIVSPPEEFAERIRRESEKWGKVIRDANVKVE
Ga0207687_111840062	3300025927	Miscanthus Rhizosphere	FLTPNFIFPIVSSQEAFAERIRRESEKWGKVIRDANVKVE
Ga0207669_109208442	3300025937	Miscanthus Rhizosphere	RDKFLTPNFIFSIVSSPDAFAERIRRESEKWGKVIRDANVRVE
Ga0209240_11241252	3300026304	Grasslands Soil	MIFSIAGSPEEFAARIRTDHAKWGKVIRDANVKVE
Ga0209239_13753362	3300026310	Grasslands Soil	LAPNFIFSIVSSPEAFAERIRRESAKWGKVIRDANIKAE
Ga0209377_13091242	3300026334	Soil	FLTPNFIFPIVSPPEAFAERIRLESAKWGKVIRDANIKAE
Ga0257150_10754891	3300026356	Soil	FLAPNFIFSIVSSPEAFAERIRRESAKWGKVIRDANIKAE
Ga0257172_10246393	3300026482	Soil	EKFLAPNFIFSIVSSPEAFAERIRRESAKWGKVIRDANIKAE
Ga0257160_11026941	3300026489	Soil	FRDRVLAPSFIYSIASSPEQFTARIQSDSAKWGKVIREANIKAE
Ga0209528_11121511	3300027610	Forest Soil	TVLAPNFIFSIASAPEVFAARIRLEWAKWGEVIRDAGLKPE
Ga0209701_104778742	3300027862	Vadose Zone Soil	FREKFLAPRFIFPIVSSPEEFAERVRTESAKWGKVIKDAN
Ga0209813_100604881	3300027866	Populus Endosphere	FLTPNFIFPIVSSPEGFAERIRRESEKWGKVIRDANVRVE
Ga0209465_101417053	3300027874	Tropical Forest Soil	FLAPNFIFSIVSSPEAFAERIRLESAKWGKVIHDANIKAE
Ga0209465_104382691	3300027874	Tropical Forest Soil	FLAPNFIFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE
Ga0209590_104328742	3300027882	Vadose Zone Soil	APNFIYSIVSSPEAFAERMRLDSEKWGKVIRAAKVKVE
Ga0209488_101522761	3300027903	Vadose Zone Soil	IFDDSAFRDKFLAPNFIFPIVSSPEAFAERIRRESATWGKIIRDANVRVE
Ga0209526_105283793	3300028047	Forest Soil	RDRYLAPAATFSIASSPEAFAERIAHDSARWGKVIRAAGIKVN
Ga0307291_10569131	3300028707	Soil	APNFIFPIVSSPEAFAERIRRESAKWGKIIRDANVRVE
Ga0307316_102355911	3300028755	Soil	FIFPIVSSPEAFAERIRRESAKWGKIIRDANVRVE
Ga0318571_101277451	3300031549	Soil	KFLAPNFIFSVTSSSEAFAERIRLESAKWREVIRNANVKVE
Ga0318571_103232792	3300031549	Soil	LAPNFIFSIVSSPEAFAERIRLESAKWGKVIRDAHIKAE
Ga0318528_106284312	3300031561	Soil	EKFLAPNFIFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE
Ga0318528_107082242	3300031561	Soil	RIFNDPAFRDKFLTPNFIFSIVSSPEAFAQRIRSESAKWGKVIRDAGVKIE
Ga0318555_105105052	3300031640	Soil	LAPNSIFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE
Ga0318542_100984703	3300031668	Soil	REKFLAPNFIFSIVSPPEAFAERIRLESAKWGKVIRDANIKAE
Ga0318574_101856692	3300031680	Soil	FLNAQTRRIFEDASFREQFLTPNFIFSIVSPADAFAERIRSESAKWGKLIRDTGLKVE
Ga0306918_109112922	3300031744	Soil	FREKFLAPNFIFSIVSSPEAFAERIRLESAKWGKVIRGANIKAE
Ga0318502_101863773	3300031747	Soil	SFREKFLAPNSIFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE
Ga0318492_104108952	3300031748	Soil	PNFIFSIVSSPEAFAERIRLESAKWGKVIRGANIKAE
Ga0318492_104116552	3300031748	Soil	AFREKFLAPNFIFPIVSSPEAFAERIRLESAKWGKVIRDAHIKVE
Ga0318521_100223424	3300031770	Soil	PNFIFSIVSSPEVFAERIRLESAKWGKVIRDANIKAE
Ga0318521_100284914	3300031770	Soil	NFIFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE
Ga0318546_111140691	3300031771	Soil	APSFIYSIVSSPDAFAERIRVESAKWGKVIKDANVKVE
Ga0318543_102267821	3300031777	Soil	FLAPNFIFSIVSPPEAFAERIRLESAKWGKVIRDANIKAE
Ga0318523_100317084	3300031798	Soil	FREKFLAPNFIFSIVSSPEAFAERIRLESAKWGKVIRDAHIKAE
Ga0318568_105167112	3300031819	Soil	AFREKFLTPNFIFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE
Ga0310917_100235564	3300031833	Soil	SFREQFLTPNFIFSIVSPADAFAERIRSESAKWGKLIRDTGLKVE
Ga0310917_106411751	3300031833	Soil	GELTIEKFLAPNFIFSIVSSPEAFAERIRLESAKWGKVIRGANIKAE
Ga0310917_108183652	3300031833	Soil	KFLAPNSIFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE
Ga0306919_101464494	3300031879	Soil	FREKFLAPNFIFSVTSLSEAFAERIRLESAKWREVIRNANVKVE
Ga0318544_101830701	3300031880	Soil	RRIFEDASFREQFLTPNFIFSIVSPADAFAERIRSESAKWGKLIRDTGLKVE
Ga0306921_111491351	3300031912	Soil	REKFLTPNFIFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE
Ga0306921_116778132	3300031912	Soil	QTRRIFEDASFREQFLTPNFIFSIVSPPEAFAERIRSESVKWERLIRDTGLKME
Ga0310912_1000303510	3300031941	Soil	FREKFLAPNFIFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE
Ga0310912_103203803	3300031941	Soil	REKFLAPNFIFSIVSSPEAFAERIRLESAKWGKVIRGANIKAE
Ga0310916_103264843	3300031942	Soil	PAFRDKFLTPNFIFSIVSSPEAFAQRIRSESAKWGKVIRDAGVKIE
Ga0310884_110855542	3300031944	Soil	NFIFPIVSSPDAFAERIRRESEKWGKVIRDANVRVE
Ga0306926_113564901	3300031954	Soil	FREKFLAPNFIFSIVSSPEAFAERIRLESAKWGKVIRDAKIKAE
Ga0306926_115595511	3300031954	Soil	TPNFIFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE
Ga0318507_102253361	3300032025	Soil	FIFSIVSPPDVFAERIRAESTKWGKLIRDTGLKIE
Ga0310911_105577902	3300032035	Soil	FREKFLAPNSIFSIVSSPEAFAERIRLESAKWGKVIRDANIKAE
Ga0318559_101429933	3300032039	Soil	PNFIFSVTSSSEAFAERIRLESAKWREVIRNANVKVE
Ga0318553_100619121	3300032068	Soil	DEPSFREQFLAPNFIFSIVSPPDVFAERIRAESAKWGKLIRDTGLKVE
Ga0318518_100270174	3300032090	Soil	FLAPNFIFSIVSAPEAFAERIRSESAKWGKIIRDANVKAE
Ga0318518_106840312	3300032090	Soil	VNLLNAQTRRIFEDASFREQFLTPNFIFSIVSPPEAFAERIRSESVKWERLIRDTGLKME
Ga0307470_103672713	3300032174	Hardwood Forest Soil	PNFIFSVVSSPEAFAERIRRESAKWGQVIRDANVKVE
Ga0306920_1014686621	3300032261	Soil	LAPAATFSIASSPEAFAERIAQDSARWGKLIRAAGIKVN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087545

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences