Metagenome / Metatranscriptome Family F087559

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087559
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	60 residues
Representative Sequence	VTPVRLAHTIGDVLSLAIPDDMADRGRSRPLLTRRRVVDYCHVTADLCPGAPGLQTRS
Number of Associated Samples	82
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	55.45 %
% of genes near scaffold ends (potentially truncated)	43.64 %
% of genes from short scaffolds (< 2000 bps)	85.45 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.545 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil (26.364 % of family members)
Environment Ontology (ENVO)	Unclassified (42.727 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.58% β-sheet: 0.00% Coil/Unstructured: 74.42%
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Predicted 3D Structure

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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF14340	DUF4395	49.09
PF00085	Thioredoxin	28.18
PF00581	Rhodanese	12.73
PF04545	Sigma70_r4	3.64
PF07210	DUF1416	2.73
PF13490	zf-HC2	1.82
PF00486	Trans_reg_C	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.55 %
Unclassified	root	N/A	45.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.55 %
Unclassified	root	N/A	45.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.55 %
Unclassified	root	N/A	45.45 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	50.91 %
Unclassified	root	N/A	45.45 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	50.91 %
Unclassified	root	N/A	45.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	33.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	15.45 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.55 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	3.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	6.36 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.55 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	3.64 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.55 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.73 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.91 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.55 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.73 %
Actinomadura oligospora	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura oligospora	0.91 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000886\|AL3A1W_1086394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	833	Open in IMG/M
3300001384\|JGI20190J14840_1002359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2326	Open in IMG/M
3300001403\|JGI20205J14842_1005633	All Organisms → cellular organisms → Bacteria	1698	Open in IMG/M
3300001403\|JGI20205J14842_1029774	Not Available	559	Open in IMG/M
3300001418\|JGI20188J14859_1008804	Not Available	1287	Open in IMG/M
3300002245\|JGIcombinedJ26739_100069828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	3238	Open in IMG/M
3300002245\|JGIcombinedJ26739_100072214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3186	Open in IMG/M
3300002245\|JGIcombinedJ26739_101810791	Not Available	511	Open in IMG/M
3300002347\|JGIcombinedJ26865_1085878	Not Available	508	Open in IMG/M
3300004063\|Ga0055483_10008055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2808	Open in IMG/M
3300004063\|Ga0055483_10044422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1299	Open in IMG/M
3300004479\|Ga0062595_101280569	Not Available	658	Open in IMG/M
3300005435\|Ga0070714_101977346	Not Available	569	Open in IMG/M
3300005436\|Ga0070713_100495591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1152	Open in IMG/M
3300005436\|Ga0070713_102071112	Not Available	552	Open in IMG/M
3300005439\|Ga0070711_100461300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1041	Open in IMG/M
3300005467\|Ga0070706_100536577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1088	Open in IMG/M
3300005610\|Ga0070763_10010790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	3761	Open in IMG/M
3300005610\|Ga0070763_10027863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2558	Open in IMG/M
3300005712\|Ga0070764_10160118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1242	Open in IMG/M
3300005921\|Ga0070766_10122539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1564	Open in IMG/M
3300005921\|Ga0070766_10633886	Not Available	720	Open in IMG/M
3300006028\|Ga0070717_10142867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2065	Open in IMG/M
3300006028\|Ga0070717_11070305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	734	Open in IMG/M
3300006028\|Ga0070717_11183913	Not Available	696	Open in IMG/M
3300006086\|Ga0075019_10668067	Not Available	655	Open in IMG/M
3300006175\|Ga0070712_100570854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	955	Open in IMG/M
3300006176\|Ga0070765_100105346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2446	Open in IMG/M
3300006806\|Ga0079220_10317387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	972	Open in IMG/M
3300007982\|Ga0102924_1230331	Not Available	779	Open in IMG/M
3300009148\|Ga0105243_11040280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	824	Open in IMG/M
3300009665\|Ga0116135_1407100	Not Available	553	Open in IMG/M
3300009700\|Ga0116217_10170227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1445	Open in IMG/M
3300009839\|Ga0116223_10660453	Not Available	601	Open in IMG/M
3300010379\|Ga0136449_100304137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2904	Open in IMG/M
3300010854\|Ga0126360_1021988	Not Available	556	Open in IMG/M
3300010856\|Ga0126358_1005034	Not Available	1077	Open in IMG/M
3300010856\|Ga0126358_1021358	Not Available	540	Open in IMG/M
3300010856\|Ga0126358_1061187	Not Available	570	Open in IMG/M
3300010858\|Ga0126345_1031618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1025	Open in IMG/M
3300010859\|Ga0126352_1243674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	741	Open in IMG/M
3300010860\|Ga0126351_1035259	Not Available	1109	Open in IMG/M
3300010860\|Ga0126351_1252195	Not Available	728	Open in IMG/M
3300010861\|Ga0126349_1036855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1055	Open in IMG/M
3300010861\|Ga0126349_1310490	Not Available	723	Open in IMG/M
3300010862\|Ga0126348_1212443	Not Available	629	Open in IMG/M
3300010864\|Ga0126357_1048949	Not Available	621	Open in IMG/M
3300010864\|Ga0126357_1150061	Not Available	1195	Open in IMG/M
3300010865\|Ga0126346_1011053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1056	Open in IMG/M
3300010865\|Ga0126346_1219034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	990	Open in IMG/M
3300010865\|Ga0126346_1281662	Not Available	518	Open in IMG/M
3300010865\|Ga0126346_1357786	Not Available	524	Open in IMG/M
3300010865\|Ga0126346_1358330	Not Available	524	Open in IMG/M
3300010866\|Ga0126344_1029645	All Organisms → cellular organisms → Bacteria	1391	Open in IMG/M
3300010866\|Ga0126344_1330346	Not Available	1255	Open in IMG/M
3300010866\|Ga0126344_1453345	Not Available	759	Open in IMG/M
3300010867\|Ga0126347_1117073	Not Available	654	Open in IMG/M
3300010867\|Ga0126347_1286447	All Organisms → cellular organisms → Bacteria	2073	Open in IMG/M
3300010867\|Ga0126347_1523741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	925	Open in IMG/M
3300010869\|Ga0126359_1048420	Not Available	684	Open in IMG/M
3300010869\|Ga0126359_1756408	Not Available	671	Open in IMG/M
3300010876\|Ga0126361_10395882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	816	Open in IMG/M
3300010876\|Ga0126361_10534550	All Organisms → cellular organisms → Bacteria	1530	Open in IMG/M
3300010880\|Ga0126350_10843713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1523	Open in IMG/M
3300012189\|Ga0137388_10735439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	916	Open in IMG/M
3300012350\|Ga0137372_10073666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2931	Open in IMG/M
3300012361\|Ga0137360_10328094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1277	Open in IMG/M
3300012363\|Ga0137390_10382403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1387	Open in IMG/M
3300012929\|Ga0137404_11644990	Not Available	596	Open in IMG/M
3300012930\|Ga0137407_11997918	Not Available	553	Open in IMG/M
3300014165\|Ga0181523_10668155	Not Available	569	Open in IMG/M
3300014501\|Ga0182024_10042588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7412	Open in IMG/M
3300014829\|Ga0120104_1013844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1425	Open in IMG/M
3300018040\|Ga0187862_10610621	Not Available	645	Open in IMG/M
3300018060\|Ga0187765_10203037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1146	Open in IMG/M
3300019887\|Ga0193729_1012702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3769	Open in IMG/M
3300019887\|Ga0193729_1059652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1529	Open in IMG/M
3300021171\|Ga0210405_10925731	Not Available	661	Open in IMG/M
3300021181\|Ga0210388_10280910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1462	Open in IMG/M
3300021286\|Ga0179583_1084568	Not Available	683	Open in IMG/M
3300021401\|Ga0210393_11599869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	517	Open in IMG/M
3300021404\|Ga0210389_10155064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1777	Open in IMG/M
3300021406\|Ga0210386_10183717	Not Available	1764	Open in IMG/M
3300021406\|Ga0210386_11069886	Not Available	686	Open in IMG/M
3300021474\|Ga0210390_10774155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	796	Open in IMG/M
3300022557\|Ga0212123_10470958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	823	Open in IMG/M
3300022714\|Ga0242671_1110287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura oligospora	533	Open in IMG/M
3300024288\|Ga0179589_10274167	Not Available	754	Open in IMG/M
3300025474\|Ga0208479_1059250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	744	Open in IMG/M
3300025504\|Ga0208356_1067672	Not Available	695	Open in IMG/M
3300025588\|Ga0208586_1045164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1004	Open in IMG/M
3300025588\|Ga0208586_1066728	Not Available	799	Open in IMG/M
3300025928\|Ga0207700_11727499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	551	Open in IMG/M
3300026285\|Ga0209438_1055425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1307	Open in IMG/M
3300027567\|Ga0209115_1100890	Not Available	654	Open in IMG/M
3300027855\|Ga0209693_10156624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1124	Open in IMG/M
3300027884\|Ga0209275_10886885	Not Available	514	Open in IMG/M
3300027895\|Ga0209624_10194625	Not Available	1346	Open in IMG/M
3300027903\|Ga0209488_10245823	Not Available	1342	Open in IMG/M
3300027908\|Ga0209006_10111981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2415	Open in IMG/M
3300028906\|Ga0308309_10689994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	887	Open in IMG/M
3300030706\|Ga0310039_10084927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1342	Open in IMG/M
3300030730\|Ga0307482_1017093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1450	Open in IMG/M
3300031231\|Ga0170824_107148665	Not Available	782	Open in IMG/M
3300031446\|Ga0170820_10981925	Not Available	585	Open in IMG/M
3300031469\|Ga0170819_11265880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1082	Open in IMG/M
3300031718\|Ga0307474_10795625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	748	Open in IMG/M
3300031718\|Ga0307474_11314351	Not Available	571	Open in IMG/M
3300032805\|Ga0335078_10073856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	4978	Open in IMG/M
3300032893\|Ga0335069_10201660	Not Available	2424	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.09%
Host-Associated	Host-Associated	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.82%
Aquatic	Environmental → Aquatic	7.27%
Plants	Host-Associated → Plants	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.82%
Freshwater	Environmental → Aquatic → Freshwater	2.73%
Marine	Environmental → Aquatic → Marine	1.82%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.82%
Sediment	Environmental → Aquatic → Sediment	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.45%
Loam	Environmental → Terrestrial → Soil → Loam	22.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.64%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.73%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.82%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.73%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	10.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.09%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.73%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.82%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.82%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	26.36%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.18%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	8.18%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	8.18%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.45%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.73%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.82%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.82%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.82%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.91%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.91%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000886	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-65cm-3A)- 1 week illumina	Environmental	Open in IMG/M
3300001384	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012	Environmental	Open in IMG/M
3300001403	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012	Environmental	Open in IMG/M
3300001418	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002347	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-072012 (NGEE Surface samples 415 (1, 2, 3 deep-072012) AP id is 1030520, ASSEMBLY_DATE=20131219)	Environmental	Open in IMG/M
3300004063	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLB_D2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010854	Boreal forest soil eukaryotic communities from Alaska, USA - W4-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010856	Boreal forest soil eukaryotic communities from Alaska, USA - W4-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010858	Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010859	Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010860	Boreal forest soil eukaryotic communities from Alaska, USA - C5-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010861	Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010862	Boreal forest soil eukaryotic communities from Alaska, USA - C4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010864	Boreal forest soil eukaryotic communities from Alaska, USA - W3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010865	Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010869	Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014829	Permafrost microbial communities from Nunavut, Canada - A10_35cm_6M	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021286	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025474	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025504	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025588	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AL3A1W_10863941	3300000886	Permafrost	IRDVLSLAIPDVLAEGGRSRPLLTRRRVVDYCHVAAALCPGMPCLQGRS*
JGI20190J14840_10023594	3300001384	Arctic Peat Soil	VRLAHTIGDVLSLAIPDVMADRGWSRPLLTRRRVVDYCHVTADLCPGAPGLQTRS*
JGI20205J14842_10056331	3300001403	Arctic Peat Soil	IGDVLSLAIPDDMADRGRSRPLLTRRRVVDYCHVTADLCPGAPGLQTRS*
JGI20205J14842_10297741	3300001403	Arctic Peat Soil	VTPGPLAHTIGDVLSLAIPDVLVDGGRSRPPLTRRRVVDYCHVTAALCPGAPCPQGRS*
JGI20188J14859_10088042	3300001418	Arctic Peat Soil	VPDNNLPNEWGVTRGRLAHTIRDVLSLANPDDIADRGRSRPLLTRRRVVDYCHVTADLCPGTPCLQGRS*
JGIcombinedJ26739_1000698283	3300002245	Forest Soil	VRLAHNIGDVLSLAIPDVMADRGWSRPLLTRRRVVDYCHVTADLCPGAPGPQTRS*
JGIcombinedJ26739_1000722145	3300002245	Forest Soil	VTPGPRAHTIGDVLSLATPHDVLPGGWSRPLLTRRRVVDYCHVAAALCPGVACLPGRS*
JGIcombinedJ26739_1018107911	3300002245	Forest Soil	VTPVRLAHTIEDVLSLAIPDDTADRGRPRPLLTRRRVVDYCHVTADLCPGAPGLQTRS*
JGIcombinedJ26865_10858782	3300002347	Arctic Peat Soil	VTPGLLAHTIRDVLSLAIPDHLADGGRSRPLLTRRRVVDYCHVTAALCPGMPCLQ
Ga0055483_100080553	3300004063	Natural And Restored Wetlands	MRVNTLLARWGVTPGAAAHTIGDVLSLAIPFERAAGGWSRPLLTRRRVVDYCHVTAALCPGVAGPRVAG*
Ga0055483_100444223	3300004063	Natural And Restored Wetlands	VRGNTLPGEWEVTPGPGPHTIGDVLSLALPAEQAAGRRPRPLLTRRRVVDFCHVATALCPGVATPRAAG*
Ga0062595_1012805692	3300004479	Soil	VTGQILLNEWEVTPGPPAHTIGDVIPQANPDDRAGGGWSRPLLTRRRVVDYCHVATALCPGVPRQLARA*
Ga0070714_1019773461	3300005435	Agricultural Soil	LAKSGRDNILLKGWGVTPGPRAHTIGDVLSLATPDVTLLGGGPRPLLTRRRVVDYCHVTAALCPGTPRLLGRS*
Ga0070713_1004955912	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRDNNLPAWWEVTHEPPGHTIGVVLSQAVPDERAGGGWSRPLLTRRRVVDYCHVAAALCPGTPCP*
Ga0070713_1020711122	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	AHTIGDVLSLATPDVMLLGGGPRPLLTRRRVVDYCHVTAALCPGTPRLLGRS*
Ga0070711_1004613001	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VTGQILLNEWEVTPGPPAHTIGDVIPQANPDDRAGGGWSRPLLTRRRVVDYCHVATALCPGVPRQLA
Ga0070706_1005365773	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MLWAKSVRGNILPKGWGVTPGPLAHTIRDVLSLAIPDDLVGDGWSRPLLTRRRVVDYCHVAAALCPGMPCLQGSS*
Ga0070763_100107904	3300005610	Soil	VKRNTLPDWWEVTQGPPRHTIGGVLSQAVPDERAGGRLRPLLTRRRVVDYCHVAAALCPGTPCP*
Ga0070763_100278633	3300005610	Soil	VRRAHTIEDVLSLAIPDDVVDRGRSRPLLTRRRVVDYCHVTADLCPGPPGPQGRS*
Ga0070764_101601182	3300005712	Soil	VTLGPLAHTIGDVLSLATPDDMLLGGGSRPLLTRRRVVDYCHVAAALCPGLTRPPGCS*
Ga0070766_101225393	3300005921	Soil	TPVRRAHTIEDVLSLAIPDDVVDRGRSRPLLTRRRVVDYCHVTADLCPGPPGPQGRS*
Ga0070766_106338861	3300005921	Soil	MKGNTLPVWWEVTQGPPRHTIGGVLSQAVPDERAGGGWPRPLLTRRRVVDYCHVAAALCPGTPCP*
Ga0070717_101428671	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LAKSGRDNILLKEWGVTPGPRAHTIGDVLSLATPDVMLLGGGPRPLLTRRRVVDYCHVTAALCPGTPRLLGRS*
Ga0070717_110703052	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VTPGPLAHTIRDVLSLANPDDLVSDGWSRPLLTRRRVVDYCHVAGALCPGMPCLQGCS*
Ga0070717_111839132	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VTPGPLAHTIGDVLSLATPDDMLLGGWSRPLLTRRRVVDYCHVAAGLCPGLPGLPGCS*
Ga0075019_106680671	3300006086	Watersheds	PNEWGVTPVRLAHTIEDVLSLAIPDDMADRGRSRPLLTRRRVVDYCHVTADLCPGTPGLQTRS*
Ga0070712_1005708541	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	DNILPKGWGVTPGPLAHTIGDVLSLATPDDMLLGGWSRPLLTRRRVVDYCHVAAALCPGMPGLPGRS*
Ga0070765_1001053463	3300006176	Soil	VTPGLRAHTIRDVISLATPDDMLLGGWSRPLLTRRRVVDYCHVATALCPGPSCLPDRS*
Ga0079220_103173871	3300006806	Agricultural Soil	NEWEVTPGPPAHTIGDVIPQANPDDRAGGGWSRPLLTRRRVVDYCHVATALCPGVPRQLARA*
Ga0102924_12303312	3300007982	Iron-Sulfur Acid Spring	VTPGPLAHTIRDVLSLAIPDDLADGGRSRPPLTRRRVVDYCHVAAALCPGVPGLQARS*
Ga0105243_110402801	3300009148	Miscanthus Rhizosphere	VTPGPPAHTIGDVIPQANPDDRAGGGWSRPLLTRRRVVDYCHVATALCPGVPRQLARA*
Ga0116135_14071002	3300009665	Peatland	EVTRGLPAHTIRDVLSLAIPDDLADGGRSRPLLTRRRVVDYCHIAAALCPGMPCLRGRS*
Ga0116217_101702273	3300009700	Peatlands Soil	VTPGPAPHTIGDVLSLPIPPERAGGGRLRPLLTRRRVVDYCHVAAALCPGQASPQAAR*
Ga0116223_106604532	3300009839	Peatlands Soil	PHTIGDVLSLPIPPERAGGGRLRPLLTRRRVVDYCHVAAALCPGQASPQAAR*
Ga0136449_1003041373	3300010379	Peatlands Soil	VTPAPAPHTIGDVLSLPIPPERAGGGRLRPLLTRRRVVDYCHVAAALCPGQASPQAAR*
Ga0126360_10219882	3300010854	Boreal Forest Soil	VTPVRLAHTIEDVLSLAIPDDMADRGRSRPLLTRRRVVDYCHVTADLCPGAPGLQTRS*
Ga0126358_10050342	3300010856	Boreal Forest Soil	VTPGPLAHTIGDVLSLATPDDMLLGGWSRPLLTRRRVVDYCHVTAALCPGMPGLPGRS*
Ga0126358_10213581	3300010856	Boreal Forest Soil	IEDVLSLAIPDDMADRGRSRPLLTRRRVVDYCHVTADLCPGAPGLQTRS*
Ga0126358_10611871	3300010856	Boreal Forest Soil	IEDVLSLAIPDDMADRGRSRPLLTRRRVVDYCHVTADLCPGTPGLQGRS*
Ga0126345_10316182	3300010858	Boreal Forest Soil	VTPGPLAHTIRDVLSLATPDVVLLGGGSRPLLTRRRVVDYCHVAAALCPGMPGLPGRS*
Ga0126352_12436742	3300010859	Boreal Forest Soil	VLFLAIPDDLAAGGRPRPLLTRRRVVDYCHVTAALCPGPPGLQGRS*
Ga0126351_10352592	3300010860	Boreal Forest Soil	VLFLAIPDDLAAGGRPRPLLTRRRVVDYCHVTAALCPGPPGLHGRS*
Ga0126351_12521951	3300010860	Boreal Forest Soil	VTPVRLAHTIGDVLSLAIPDDMADRGRPRPLLTRRRVVDYCHVTADLCPGAPGLQTRS*
Ga0126349_10368552	3300010861	Boreal Forest Soil	VTPGPLAHTIGDVLSLATPDDMLLGGWSRPLLTRRRVVDYCHVAAALCPGMPGLPGRS*
Ga0126349_13104901	3300010861	Boreal Forest Soil	PKGWGVTPGPLAHTIGDVLSLATPDDMLLGGWSRPLLTRRRVVDYCHVTAALCPGMPGLPGRS*
Ga0126348_12124432	3300010862	Boreal Forest Soil	VTPVRQAHTIEDVLSLAIPDDMADRGRSRPLLTRRRVVDYCHVTADLCPGTPGLQGRS*
Ga0126357_10489491	3300010864	Boreal Forest Soil	RSGPDNNLPNEWGVTPVRLAHTIEDVLSLAIPDDMADRGRSRPLLTRRRVVDYCHVTADLCPGASGLQTRS*
Ga0126357_11500613	3300010864	Boreal Forest Soil	VTPVRLAHTIEDVLSLAIPDDMADRGRPRPLLTRRRVVDYCHVTADLCPGAPGLQTRS*
Ga0126346_10110532	3300010865	Boreal Forest Soil	VTPVRLAHTIEDVLSLAIPDDMADRGRSRPLLTRRRVVDYCHVTADLCPGASGLQTRS*
Ga0126346_12190342	3300010865	Boreal Forest Soil	VTPGPLAHTIGDVLSLANPDDMLLGGWSLPLLTRRRVVDYCHVAAALCPGMPGLPGRS*
Ga0126346_12816622	3300010865	Boreal Forest Soil	AIPDDMADRGRSRPLLTRRRVVDYCHVTADLCPGTPGLQGRS*
Ga0126346_13577861	3300010865	Boreal Forest Soil	PRSGPDNNLPNEWGVTPVRLAHTIEDVLSLAIPDDMADRGQPWPLLTRRRVVDYCHVTADLCPGAPGLQTRS*
Ga0126346_13583301	3300010865	Boreal Forest Soil	PRSGPDNNLPNEWGVTPVRLAHTIEDVLSLAIPDDMADRGRPRPLLTRRRVVDYCHVTADLCPGAPGLQTRS*
Ga0126344_10296453	3300010866	Boreal Forest Soil	VTPGPLAHTIRDVLSLATPDDMLLGGWSRPLLTRRRVVDYCHVAAALCPGMPCLPGRS*
Ga0126344_13303463	3300010866	Boreal Forest Soil	VTPVRLAHTIGDVLSLAIPDDMADRGRSRPLLTRRRVVDYCHVTADLCPGAPGLQTRS*
Ga0126344_14533452	3300010866	Boreal Forest Soil	DVLSLAIPDDMADRGRSRPLLTRRRVVDYCHVSADLCPGTPGLQTRS*
Ga0126347_11170731	3300010867	Boreal Forest Soil	EDVLSLAIPDDMADRGRSRPLLTRRRVVDYCHVTADLCPGAPGLQTRS*
Ga0126347_12864471	3300010867	Boreal Forest Soil	TLLVKCGRDNILLKGWGVTPGPLAHTIRDVLSLATPDVMLLGGGSRPLLTRRRVVDYCHVAAALCPGPPGLPGRS*
Ga0126347_15237411	3300010867	Boreal Forest Soil	PRSGPDNNLPNEWGVTPVRLAHTIEDVLSLAIPDDMADRGQPRPLLTRRRVVDYCHVTADLCPGAPGLQTRS*
Ga0126359_10484201	3300010869	Boreal Forest Soil	WAPWTRSGPDNNLPNEWGVTPVRLAHTIEDVLSLAIPDDMADRGRSRPLLTRRRVVDYCHVTADLCPGASGLQTRS*
Ga0126359_17564081	3300010869	Boreal Forest Soil	LAHTIGDVLSLATPDDMLLGGWSRPLLTRRRVVDYCHVAAALCPGMPGLPGRS*
Ga0126361_103958822	3300010876	Boreal Forest Soil	VLFLAIPDDLAAGGRPRPLLTRRRVVDYCHVTAALCPGAPGLQGRS*
Ga0126361_105345503	3300010876	Boreal Forest Soil	DVLSLAIPDDMADRGRSRPLLTRRRVVDYCHVTADLCPGASGLQTRS*
Ga0126350_108437133	3300010880	Boreal Forest Soil	VTPVRLAHTIEDVLSLAIPDDMADRGRSRPLLTRRRVVDYCHVSADLCPGTPGLQTRS*
Ga0137388_107354391	3300012189	Vadose Zone Soil	PDSNLPRRWGVTPGPLAHTIRDVLSLAIPDALADGGRSRPLLTKRRVVDYCHVATTLCPGTPCLQGRS*
Ga0137372_100736663	3300012350	Vadose Zone Soil	VTPGPLAHTIGDVLSLAIPAHLADGGRSRPLLTRRRVVDYCHVTAALCPGMPCLQGRS*
Ga0137360_103280942	3300012361	Vadose Zone Soil	VTPGPLAHTIGDVLSLANPDDMLLGGWSRPLLTRRRVVDYCHVAAALCPGTPGLPGRS*
Ga0137390_103824033	3300012363	Vadose Zone Soil	AKFVPDNILPKRWGVTPGPLAHTIRDVLSLAIPDDLAEGGSSWPLLTRRRVVDYCHVAAALCPGMPCLRGLS*
Ga0137404_116449902	3300012929	Vadose Zone Soil	WGVTPGPLAHTIGDVLSLANPDDMLLGGWSRPLLTRRRVVDYCHVAAALCPGTPGLPGRS
Ga0137407_119979182	3300012930	Vadose Zone Soil	VSDNNLPNEWGVTPGRLAHTIRDVLSLAIPDDLAEGGLSRPLLTRRRVVDYCHVAAALC
Ga0181523_106681551	3300014165	Bog	VTPGPAPHTISDVLSLAIPPERAAGGRLRPLLTRRRVVDYCHVAAALCPGQ
Ga0182024_100425888	3300014501	Permafrost	VLFLAIPDDMAAGGRPRPLLTRRRVVDYCHVTAALCPGTPGLQGRS*
Ga0120104_10138441	3300014829	Permafrost	VTPGPLAHTIRDVLSLAIPDVLAEGGRSRPLLTRRRVVDYCHVAAALCPGMP
Ga0187862_106106212	3300018040	Peatland	MDNFLSKRWEVTRGLPAHTIRDVLSLAIPDDLADGGRSRPLLTRRRVVDYCHIAAALCPGMPCLRGRS
Ga0187765_102030372	3300018060	Tropical Peatland	MQWEVTQVSAAHTIVGVLPQAVPDECAGGGWPRPLLTRRRDVDYCHVAAALCPGAPRPEPAG
Ga0193729_10127025	3300019887	Soil	VTPGPLAHTIGDVLSLANPDDMLLGGWSRPLLTRRRVVDYCHVAAALCPGTPGLPGRS
Ga0193729_10596523	3300019887	Soil	VTPGRLAHTIRDVLSLAIPDDVADRGRSRPLLTRRRVVDYCHVTADLCPGTPGLQGRS
Ga0210405_109257312	3300021171	Soil	MRDNNLPAWWEVTHEPPGHTIGVVLSQAVPDERAGGGWSRPLLTRRRVVDYCHVAAAL
Ga0210388_102809101	3300021181	Soil	VTPVRRAHTIEDVLSLAIPDDVVDRGRSRPLLTRRRVVDYCHVTADLCPGPPGPQGRS
Ga0179583_10845682	3300021286	Vadose Zone Soil	AIPDDVADRGRSRPLLTRRRVVDYCHVTADLCPGTPGLQGRS
Ga0210393_115998691	3300021401	Soil	WAPWTRSGPDNNLSNEWGVTPVRRAHTIEDVLSLAIPDDVVDRGRSRPLLTRRRVVDYCHVTADLCPGPPGPQGRS
Ga0210389_101550642	3300021404	Soil	VTPVRRAHTIEDVLSLAIPDDVADRGRSRPLLTRRRVVDYCHVTADLCPGPPGPQGRS
Ga0210386_101837172	3300021406	Soil	VRRAHTIEDVLSLAIPDDVVDRGRSRPLLTRRRVVDYCHVTADLCPGPPGPQGRS
Ga0210386_110698861	3300021406	Soil	IRDVHSLATPDDMLLGGGSRPLLTRRRVVDYCHVAAALCPGLTRPPGCS
Ga0210390_107741551	3300021474	Soil	SLAIPDDVADRGRSRPLLTRRRVVDYCHVTADLCPGPPGPQGRS
Ga0212123_104709582	3300022557	Iron-Sulfur Acid Spring	VTPGPLAHTIRDVLSLAIPDDLADGGRSRPPLTRRRVVDYCHVAAALCPGVPGLQARS
Ga0242671_11102872	3300022714	Soil	GPRAHTIRDVISLATPDDMLLGGWSRPLLTRRRVVDYCHVATALCPGSSRLPDRS
Ga0179589_102741671	3300024288	Vadose Zone Soil	WTRSRPDNNLPDEWGVTPVRRAHTIEGVLSLAIPDDVADRGRPQPLLTRRRVVAYCHVTADLCPGTPGLQGRS
Ga0208479_10592502	3300025474	Arctic Peat Soil	VTPGLLAHTIRDVLSLAIPDHLADGGRSRPLLTRRRVVDYCHVTAALCPGMPCLQGRS
Ga0208356_10676722	3300025504	Arctic Peat Soil	VRLAHTIGDVLSLAIPDVMADRGWSRPLLTRRRVVDYCHVTADLCPGAPGLQTRS
Ga0208586_10451642	3300025588	Arctic Peat Soil	VRLAHTIGDVLSLAIPDDMADRGRSRPLLTRRRVVDYCHVTADLCPGAPGLQTRS
Ga0208586_10667281	3300025588	Arctic Peat Soil	VPDNNLPHWWGVTRGRLAHSIGGVLFLAIPDDMAAGGRSRPLLTRRRVVDYCHVNAALC
Ga0207700_117274992	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	KEWGVTPGPRAHTIGDVLSLATPDVMLLGGGPRPLLTRRRVVDYCHVTAALCPGTPRLLGRS
Ga0209438_10554251	3300026285	Grasslands Soil	GPLAHTIRDVLSLAIPDVLAEGGRSRPLLTRRRVVDYCHIAAALCPGMPCLPGRS
Ga0209115_11008902	3300027567	Forest Soil	RSCRLSAKSGRDNILSKGWGVTPGPRAHTIRDVISLATPDDMLLGGWSRPLLTRRRVVDYCHVATALCPGPSCLPARS
Ga0209693_101566241	3300027855	Soil	CRLWAKSGRDNILSKGWGVTLGPLAHTIRDVLSLATPDDMLLGGGSRPLLTRRRVVDYCHVAAALCPGLTRPPGCS
Ga0209275_108868851	3300027884	Soil	VRRAHTIEDVLSLAIPDDVADRGRSRPLLTRRRVVDYCHVTADLCPGPPGPRGRS
Ga0209624_101946253	3300027895	Forest Soil	VRLAHNIGDVLSLAIPDVMADRGWSRPLLTRRRVVDYCHVTADLCPGAPGPQTRS
Ga0209488_102458232	3300027903	Vadose Zone Soil	VTPGPLAHTIGDVLSLANPDDMLLGGWSRPLLTRRRVVDYCHVAAALCPGMPCLRGLS
Ga0209006_101119814	3300027908	Forest Soil	VRLAHTIEDVLSLAIPDDTADRGRPRPLLTRRRVVDYCHVTADLCPGAPGLQTRS
Ga0308309_106899941	3300028906	Soil	LAKSGRDNILSKGWGVTPGLRAHTIRDVISLATPDDMLLGGWSRPLLTRRRVVDYCHVATALCPGPSCLPDRS
Ga0310039_100849273	3300030706	Peatlands Soil	VTPGPAPHTIGDVLSLPIPPERAGGGRLRPLLTRRRVVDYCHVAAALCPGQASPQAAR
Ga0307482_10170932	3300030730	Hardwood Forest Soil	VTPGPLAHTIGDVLSLATPDDMLLGGWSRPLLTRRRVVDYCHVAAALCPGMPGLPGRS
Ga0170824_1071486652	3300031231	Forest Soil	MRDNNLPAWWEVTHEPPGHTIGVVLSQAVPDERAGGGWSRPLLTRRRVVDYCHVAAALCPGTPCP
Ga0170820_109819252	3300031446	Forest Soil	VKSVRDNILPKGWGVTPGPLAHTIRDVLSLAIPDDLVSDGWSRPLLTRRRVVDYCHVAGALCPGMPCLQGCS
Ga0170819_112658802	3300031469	Forest Soil	VRDNILPKGWGVTPGPLAHTIRDVLSLAIPDDLVSDGWSRPLLTRRRVVDYCHVAGALCPGMPCLQGCS
Ga0307474_107956252	3300031718	Hardwood Forest Soil	VRRAHTIEDVLSLAIPDDVADRGRSRPLLTRRRVVDYCHVTADLCPGPPGPQGRS
Ga0307474_113143511	3300031718	Hardwood Forest Soil	VTPGLLAHTIGDVLSLATPDDMLLGGWSRPLLTRRRVVDYCHVAAALCPGMPGLPGRS
Ga0335078_100738562	3300032805	Soil	MPWTKSGPANALDDIRAHILPGRWGVTQGPRAHTIGDVLSLAIPDHLADGGRSRLLLTRRRVVDHCHIAAALCPGMFCLQSRS
Ga0335069_102016603	3300032893	Soil	MQWEVTRVPPAHTIMGVLSQAVPDEWAGGGGLRPLLTRRRDVDYCHVAAALCPGAPRP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087559

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences