Metagenome Family F087672

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087672
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	65 residues
Representative Sequence	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPITTAKRKPKRRS
Number of Associated Samples	91
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.18 %
% of genes near scaffold ends (potentially truncated)	22.73 %
% of genes from short scaffolds (< 2000 bps)	71.82 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.273 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.182 % of family members)
Environment Ontology (ENVO)	Unclassified (30.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.091 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.64% β-sheet: 26.60% Coil/Unstructured: 62.77%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF12704	MacB_PCD	2.73
PF13561	adh_short_C2	1.82
PF03551	PadR	1.82
PF03572	Peptidase_S41	1.82
PF13620	CarboxypepD_reg	1.82
PF00239	Resolvase	1.82
PF01904	DUF72	1.82
PF03100	CcmE	1.82
PF00294	PfkB	0.91
PF00206	Lyase_1	0.91
PF04471	Mrr_cat	0.91
PF13432	TPR_16	0.91
PF11104	PilM_2	0.91
PF08281	Sigma70_r4_2	0.91
PF12158	DUF3592	0.91
PF00903	Glyoxalase	0.91
PF13646	HEAT_2	0.91
PF14659	Phage_int_SAM_3	0.91
PF03544	TonB_C	0.91
PF13302	Acetyltransf_3	0.91
PF04986	Y2_Tnp	0.91
PF13360	PQQ_2	0.91
PF14384	BrnA_antitoxin	0.91
PF04956	TrbC	0.91
PF04264	YceI	0.91
PF01850	PIN	0.91
PF12679	ABC2_membrane_2	0.91
PF14094	DUF4272	0.91
PF01895	PhoU	0.91
PF13274	DUF4065	0.91
PF00166	Cpn10	0.91
PF04679	DNA_ligase_A_C	0.91
PF06737	Transglycosylas	0.91
PF00227	Proteasome	0.91
PF02687	FtsX	0.91
PF05649	Peptidase_M13_N	0.91
PF01548	DEDD_Tnp_IS110	0.91
PF04402	SIMPL	0.91
PF01545	Cation_efflux	0.91
PF01527	HTH_Tnp_1	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0793	C-terminal processing protease CtpA/Prc, contains a PDZ domain	Posttranslational modification, protein turnover, chaperones [O]	1.82
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.82
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.82
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	1.82
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.82
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.82
COG2332	Cytochrome c biogenesis protein CcmE	Posttranslational modification, protein turnover, chaperones [O]	1.82
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.82
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.91
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG0638	20S proteasome, alpha and beta subunits	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.91
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.91
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.91
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	0.91
COG2859	Outer membrane channel-forming protein BP26/OMP28, SIMPL family	Cell wall/membrane/envelope biogenesis [M]	0.91
COG2968	Uncharacterized conserved protein YggE, contains kinase-interacting SIMPL domain	Function unknown [S]	0.91
COG3471	Predicted secreted (periplasmic) protein	Function unknown [S]	0.91
COG3484	Predicted proteasome-type protease	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.91
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG3838	Type IV secretory pathway, VirB2 component (pilin)	Intracellular trafficking, secretion, and vesicular transport [U]	0.91
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.91
COG5405	ATP-dependent protease HslVU (ClpYQ), peptidase subunit	Posttranslational modification, protein turnover, chaperones [O]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.27 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.27 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.27 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	42.73 %
Unclassified	root	N/A	32.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.73 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	26.36 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.55 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.73 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.91 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	0.91 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.55 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.73 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.91 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.91 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.73 %
Paludibaculum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum	0.91 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.91 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.91 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.73 %
Paludibaculum fermentans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	0.91 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.91 %
Acidobacteria bacterium 13_1_40CM_4_58_4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	0.91 %
Acidobacteria bacterium 13_1_20CM_2_60_10	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10004420	All Organisms → cellular organisms → Bacteria	9973	Open in IMG/M
3300001593\|JGI12635J15846_10001045	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	24285	Open in IMG/M
3300001593\|JGI12635J15846_10599144	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300004091\|Ga0062387_100035595	All Organisms → cellular organisms → Bacteria → Acidobacteria	2250	Open in IMG/M
3300004092\|Ga0062389_100197177	All Organisms → cellular organisms → Bacteria → Acidobacteria	1973	Open in IMG/M
3300005445\|Ga0070708_100033554	All Organisms → cellular organisms → Bacteria	4459	Open in IMG/M
3300005467\|Ga0070706_100754406	Not Available	902	Open in IMG/M
3300005518\|Ga0070699_100540044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1061	Open in IMG/M
3300005534\|Ga0070735_10622291	Not Available	640	Open in IMG/M
3300005536\|Ga0070697_100394477	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1200	Open in IMG/M
3300005537\|Ga0070730_10925824	Not Available	545	Open in IMG/M
3300005557\|Ga0066704_10192418	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300005568\|Ga0066703_10058780	All Organisms → cellular organisms → Bacteria	2174	Open in IMG/M
3300005569\|Ga0066705_10319056	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	984	Open in IMG/M
3300005586\|Ga0066691_10015013	All Organisms → cellular organisms → Bacteria → Acidobacteria	3727	Open in IMG/M
3300005591\|Ga0070761_10209261	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1157	Open in IMG/M
3300005764\|Ga0066903_108210431	Not Available	534	Open in IMG/M
3300006050\|Ga0075028_100087552	All Organisms → cellular organisms → Bacteria	1567	Open in IMG/M
3300006173\|Ga0070716_100093642	All Organisms → cellular organisms → Bacteria → Acidobacteria	1824	Open in IMG/M
3300006176\|Ga0070765_101224955	Not Available	709	Open in IMG/M
3300009038\|Ga0099829_11173861	Not Available	636	Open in IMG/M
3300009088\|Ga0099830_11841242	Not Available	506	Open in IMG/M
3300009137\|Ga0066709_102693661	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663	Open in IMG/M
3300010159\|Ga0099796_10162328	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	886	Open in IMG/M
3300010304\|Ga0134088_10492740	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300010341\|Ga0074045_10120749	All Organisms → cellular organisms → Bacteria	1799	Open in IMG/M
3300010343\|Ga0074044_10000508	All Organisms → cellular organisms → Bacteria	37526	Open in IMG/M
3300010360\|Ga0126372_11701385	Not Available	672	Open in IMG/M
3300010361\|Ga0126378_12925793	Not Available	545	Open in IMG/M
3300010379\|Ga0136449_100364256	All Organisms → cellular organisms → Bacteria → Acidobacteria	2588	Open in IMG/M
3300011269\|Ga0137392_10014130	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5409	Open in IMG/M
3300011269\|Ga0137392_10439169	Not Available	1084	Open in IMG/M
3300011269\|Ga0137392_11254515	Not Available	600	Open in IMG/M
3300011271\|Ga0137393_11416156	Not Available	584	Open in IMG/M
3300012203\|Ga0137399_10327989	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10	1268	Open in IMG/M
3300012203\|Ga0137399_11636195	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300012205\|Ga0137362_10464951	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1095	Open in IMG/M
3300012361\|Ga0137360_10419277	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1131	Open in IMG/M
3300012685\|Ga0137397_10357526	All Organisms → cellular organisms → Bacteria → Acidobacteria	1088	Open in IMG/M
3300012918\|Ga0137396_10345000	Not Available	1102	Open in IMG/M
3300012923\|Ga0137359_10626433	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	942	Open in IMG/M
3300012924\|Ga0137413_10005599	All Organisms → cellular organisms → Bacteria	5745	Open in IMG/M
3300012924\|Ga0137413_10871513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300012927\|Ga0137416_11861120	Not Available	550	Open in IMG/M
3300012929\|Ga0137404_11939223	Not Available	549	Open in IMG/M
3300014501\|Ga0182024_10464191	All Organisms → cellular organisms → Bacteria → Acidobacteria	1620	Open in IMG/M
3300014638\|Ga0181536_10375696	All Organisms → cellular organisms → Bacteria → Acidobacteria	641	Open in IMG/M
3300015264\|Ga0137403_11501431	Not Available	524	Open in IMG/M
3300017822\|Ga0187802_10010516	All Organisms → cellular organisms → Bacteria → Proteobacteria	2977	Open in IMG/M
3300017933\|Ga0187801_10045181	Not Available	1587	Open in IMG/M
3300017942\|Ga0187808_10059601	All Organisms → cellular organisms → Bacteria	1626	Open in IMG/M
3300017961\|Ga0187778_10033976	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3119	Open in IMG/M
3300018006\|Ga0187804_10545597	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300018007\|Ga0187805_10181516	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	960	Open in IMG/M
3300018007\|Ga0187805_10280602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_58_4	765	Open in IMG/M
3300018088\|Ga0187771_10906261	Not Available	748	Open in IMG/M
3300018088\|Ga0187771_11663717	Not Available	542	Open in IMG/M
3300020199\|Ga0179592_10132680	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1142	Open in IMG/M
3300020579\|Ga0210407_10000075	All Organisms → cellular organisms → Bacteria	132704	Open in IMG/M
3300020580\|Ga0210403_10000183	All Organisms → cellular organisms → Bacteria	70123	Open in IMG/M
3300020580\|Ga0210403_10123953	All Organisms → cellular organisms → Bacteria	2104	Open in IMG/M
3300020580\|Ga0210403_10316687	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1278	Open in IMG/M
3300020580\|Ga0210403_10473307	Not Available	1019	Open in IMG/M
3300020581\|Ga0210399_10000025	All Organisms → cellular organisms → Bacteria	105692	Open in IMG/M
3300020581\|Ga0210399_10171273	Not Available	1800	Open in IMG/M
3300020582\|Ga0210395_10000074	All Organisms → cellular organisms → Bacteria	85459	Open in IMG/M
3300020583\|Ga0210401_10016301	All Organisms → cellular organisms → Bacteria → Proteobacteria	7176	Open in IMG/M
3300020583\|Ga0210401_10047978	All Organisms → cellular organisms → Bacteria	4038	Open in IMG/M
3300020583\|Ga0210401_10666114	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	901	Open in IMG/M
3300021086\|Ga0179596_10420677	Not Available	675	Open in IMG/M
3300021168\|Ga0210406_10064273	Not Available	3172	Open in IMG/M
3300021168\|Ga0210406_10097803	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2496	Open in IMG/M
3300021168\|Ga0210406_10200901	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300021170\|Ga0210400_10242523	Not Available	1472	Open in IMG/M
3300021178\|Ga0210408_10705873	All Organisms → cellular organisms → Bacteria → Acidobacteria	794	Open in IMG/M
3300021178\|Ga0210408_11502895	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300021180\|Ga0210396_10407609	Not Available	1195	Open in IMG/M
3300021401\|Ga0210393_10000133	All Organisms → cellular organisms → Bacteria → Acidobacteria	76892	Open in IMG/M
3300021405\|Ga0210387_10150817	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1988	Open in IMG/M
3300021406\|Ga0210386_11483295	Not Available	566	Open in IMG/M
3300021407\|Ga0210383_10643339	All Organisms → cellular organisms → Bacteria → Proteobacteria	913	Open in IMG/M
3300021432\|Ga0210384_10000717	All Organisms → cellular organisms → Bacteria	49321	Open in IMG/M
3300021432\|Ga0210384_10019011	All Organisms → cellular organisms → Bacteria	6668	Open in IMG/M
3300021433\|Ga0210391_10123933	All Organisms → cellular organisms → Bacteria	2034	Open in IMG/M
3300021478\|Ga0210402_10762623	Not Available	892	Open in IMG/M
3300021479\|Ga0210410_10000112	All Organisms → cellular organisms → Bacteria	121848	Open in IMG/M
3300021559\|Ga0210409_10341545	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	1346	Open in IMG/M
3300025910\|Ga0207684_11100033	Not Available	661	Open in IMG/M
3300025922\|Ga0207646_11228596	Not Available	656	Open in IMG/M
3300026333\|Ga0209158_1017438	All Organisms → cellular organisms → Bacteria → Acidobacteria	3313	Open in IMG/M
3300026467\|Ga0257154_1011928	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1204	Open in IMG/M
3300026497\|Ga0257164_1100412	Not Available	501	Open in IMG/M
3300026515\|Ga0257158_1026337	All Organisms → cellular organisms → Bacteria → Acidobacteria	1004	Open in IMG/M
3300026551\|Ga0209648_10161080	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1759	Open in IMG/M
3300026551\|Ga0209648_10705342	Not Available	551	Open in IMG/M
3300027565\|Ga0209219_1078412	Not Available	819	Open in IMG/M
3300027643\|Ga0209076_1080126	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	929	Open in IMG/M
3300027853\|Ga0209274_10550105	Not Available	598	Open in IMG/M
3300027854\|Ga0209517_10037362	All Organisms → cellular organisms → Bacteria	3914	Open in IMG/M
3300027857\|Ga0209166_10574506	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300027862\|Ga0209701_10613434	Not Available	575	Open in IMG/M
3300028047\|Ga0209526_10190461	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1424	Open in IMG/M
3300028906\|Ga0308309_11761837	Not Available	524	Open in IMG/M
3300031057\|Ga0170834_105364177	All Organisms → cellular organisms → Bacteria	1862	Open in IMG/M
3300031057\|Ga0170834_106539201	All Organisms → cellular organisms → Bacteria → Acidobacteria	638	Open in IMG/M
3300031231\|Ga0170824_123771942	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	727	Open in IMG/M
3300031715\|Ga0307476_10042998	All Organisms → cellular organisms → Bacteria	3055	Open in IMG/M
3300031753\|Ga0307477_10022634	All Organisms → cellular organisms → Bacteria	4293	Open in IMG/M
3300031823\|Ga0307478_10079223	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2503	Open in IMG/M
3300032180\|Ga0307471_101314821	Not Available	885	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.91%
Aquatic	Environmental → Aquatic	9.09%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.91%
Freshwater	Environmental → Aquatic → Freshwater	8.18%
Sediment	Environmental → Aquatic → Sediment	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.91%
Loam	Environmental → Terrestrial → Soil → Loam	14.55%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.18%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.36%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.45%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.55%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.18%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	20.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.36%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.55%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.64%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.73%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.73%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.73%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.82%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300026497	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-B	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_1000442011	3300000567	Peatlands Soil	MAKFRYEWFLFGYKDGVPDVISRPFKTKAAAEKARGKYPPKVRGGIGVGIRQIPVTRAKRKPKQHSS*
JGI12635J15846_1000104522	3300001593	Forest Soil	MVKFRYEWFLFDYKKGFPDRLSRPFKTKAGAEKAREKYPAKERGGIGVANCQIPVTRPKRKS*
JGI12635J15846_105991442	3300001593	Forest Soil	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKARGKYAPKVRGGIGVGISQIPVTTAKRKPKRKS*
Ga0062387_1000355954	3300004091	Bog Forest Soil	MAKFRYEWFLFDYKKGYPDTFSKPFKTKAAAEKARERYPLKLQGGIGVGIVQIPFATTKRKPSRKA*
Ga0062389_1001971772	3300004092	Bog Forest Soil	VPGFLSDAVTGNVPERCLIAFLMAKFRYEWFLFDYKKGYPDTFSKPFKTKAAAEKARERYPLKLQGGIGVGIAQIPFATTKRKPSRKA*
Ga0070708_1000335541	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPKVRGGIGVGISQIPITT
Ga0070706_1007544061	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MAKFRYEWFLFDYEKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVDISQIPITTAKRKPKRRS*
Ga0070699_1005400442	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPITTAIRKPKRRS*
Ga0070735_106222912	3300005534	Surface Soil	MAKFRYEWFLFGYKDGVPDVISKPFKTKAAAEKAREKYPLKLRGGIGVGIRRIPVTGAKRKTKRCSS*
Ga0070697_1003944772	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	AKFRYEWFLFDYEKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVDISQIPITTAKRKPKRRS*
Ga0070730_109258241	3300005537	Surface Soil	MAKFKYEWFLFGYKNGVPDIFSKPFKTKEAAEKARGKYPPKMQGGIGVGISQIPITRAKRKPKQHSS*
Ga0066704_101924181	3300005557	Soil	LLCNQVPERCLIGFLMAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPITTAKRKPKRRS*
Ga0066703_100587802	3300005568	Soil	MVVKQPKFTRVEEPTLLCNQVPERCLIGFFMAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPITTAKRKPKRRS*
Ga0066705_103190562	3300005569	Soil	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPKVRGGIGVGISQIPITTPKRKLRRRS*
Ga0066691_100150133	3300005586	Soil	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPITTAKRKPKRRS*
Ga0070761_102092613	3300005591	Soil	TKKGYPDRISKPFKTKAAAEKAREKYAPKMRGGIGVGISQIPVTTAKRKPKRKS*
Ga0066903_1082104312	3300005764	Tropical Forest Soil	MAKFRYEWFLFGYRDGVPDVISKPFKTKAAAEKARGKYPPKVRGGIGVGIRQIPVTGAKGRPKQ
Ga0075028_1000875522	3300006050	Watersheds	VLINAVNGQVPERCLIGFLMDKFRYEWLLFGYKDGVFEVISKPHKTRAAAEKARGKYPPKMRGGIGVGIRQIRVTGAKRKPKRNSW*
Ga0070716_1000936421	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MAKFRYEWFLFGYKDGVPDVISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPVTQAKRKPKQRSSFHEKAG*
Ga0070765_1012249551	3300006176	Soil	MGKFRYEWFLFNYKDGVPDVISKPFRTKAAAEKARGKYPPKVRGGIGVGIRQIPVTVAKRKPKQRSS*
Ga0099829_111738611	3300009038	Vadose Zone Soil	MVKFRYEWFLFDYKKGFPDRLSRPFKTKAAAEKAREKYPAKERGGIGVAICQIPVTRPKRKS*
Ga0099830_118412422	3300009088	Vadose Zone Soil	FRYEWFLFDYKDGVPDVVSKPFKTKADAEKAREKYPVKERGGIGVGIRQIPVTRPKRKT*
Ga0066709_1026936612	3300009137	Grasslands Soil	MAKFKYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPNVRGGIGVGISQIPITTPKRKLKRRS*
Ga0099796_101623282	3300010159	Vadose Zone Soil	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPKVRGGIGVGISQSPITTPKRKLKRRS*
Ga0134088_104927401	3300010304	Grasslands Soil	MAKFKYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPKVRHSIGVGISQIPITTPKRKLRRRS
Ga0074045_101207493	3300010341	Bog Forest Soil	MAKFKKEWFLFDYKKGFPDLISRAFKSKAEAEKARDKYPAKKRGGIGVGVRRIPVGQPR*
Ga0074044_1000050818	3300010343	Bog Forest Soil	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKARGGIGVGISQIPITTAKRKPKRRS*
Ga0126372_117013851	3300010360	Tropical Forest Soil	MTKFRYEWFLFGYRNGVPDVISKPFKTKAAAEKARGKYPLKVRGGIGVGIRQIPVTGSKGRPKQRSS*
Ga0126378_129257932	3300010361	Tropical Forest Soil	MAKFRYEWFLFGYRDGVPDVISKPFKIKAAAEKARGKYPPKVRGGIGVGIRQIPFTGAKGRLKQRSS*
Ga0136449_1003642564	3300010379	Peatlands Soil	MAKFRYEWFLFDYKEGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPITTAKRKPKRRS*
Ga0137392_100141306	3300011269	Vadose Zone Soil	MAKFGYEWFLFGYKDGVPDVISKPFKTKAAAEKARGKYPPKVRGGIGVGIRQIPVTRAKRKPKQRSS*
Ga0137392_104391692	3300011269	Vadose Zone Soil	MVKFRYEWFLFDYKKGFPDRLSRPFKTKAGAEKAREKYPAKERGGIGVAICQIPVTRPKRKS*
Ga0137392_112545152	3300011269	Vadose Zone Soil	MAKFRYEWFLFDYKDGVPDVVSKPFKTKADAEKAREKYPVKERGGIGVGIRQIPVTRPKRKT*
Ga0137393_114161561	3300011271	Vadose Zone Soil	NALRFRMAKFRYEWFLFDYKDGVPDVVSKPFKTKADAEKAREKYPVKERGGIGVGIRQIPVTRPKRKT*
Ga0137399_103279892	3300012203	Vadose Zone Soil	MAKFRYEWFLFGYKDGVPDVISKPFKTKAAAEKARGKYPPKVRGGIGVGIRQIAVTRAKRKRKQRSS*
Ga0137399_116361951	3300012203	Vadose Zone Soil	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPKVWGGIGVGMSQIPINTPKRKLKRTS*
Ga0137362_104649512	3300012205	Vadose Zone Soil	MVKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPKVRGGIGVGISQIPITTPKRKLKRRS*
Ga0137360_104192771	3300012361	Vadose Zone Soil	MAKFRYEWFLFDYKKGYPDRIAKPFKTKAAAEKAREKHAPKVRGGIGVGISQIPITTPKRKLKRRS
Ga0137397_103575262	3300012685	Vadose Zone Soil	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPAKVWGGIGVGMSQIPITTPKRKLKRRS*
Ga0137396_103450001	3300012918	Vadose Zone Soil	MAKFRYEWFLFGYKDGVPDVISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPVTTAKRKPKPRS*
Ga0137359_106264332	3300012923	Vadose Zone Soil	MAKFRFEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPKVRGGIGVGISQIPITTPKRKLKRRS*
Ga0137413_100055993	3300012924	Vadose Zone Soil	MAKFRYEWFLFDYKKGYPDRVSKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPITTAKRKPNRRS*
Ga0137413_108715131	3300012924	Vadose Zone Soil	MAKFRYEWFLFGYKKGFPDRISRFLKTKAGAEKAREKYPAKERGRIGVGICQIPVTKPRRKT*
Ga0137416_118611201	3300012927	Vadose Zone Soil	RYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPKVRGGIGVGISQIPITTPKRKLKRRS*
Ga0137404_119392231	3300012929	Vadose Zone Soil	CLIGFLMAKFRYEWFLFDYKKGYPDRISKPFKTKADAEKAREKYPVKKRGGIGVGISQIPVIRPKRKT*
Ga0182024_104641912	3300014501	Permafrost	MPKYRYEWFLFDYKKGFPDRISKPLKTKAGAEKAQEKYPAKERGGIGVGISQIPVTKAKRKPKRNS*
Ga0181536_103756961	3300014638	Bog	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPKVRGGIGVGISQIPITAPKRKLKRRS*
Ga0137403_115014311	3300015264	Vadose Zone Soil	KFRYEWFLFDYKKGYPDRISKPFKTKADAEKAREKYPVKKRGGIGVGISQIPVIRPKRKT
Ga0187802_100105162	3300017822	Freshwater Sediment	VQQHAGQHYKKGYPDRISKQFTTKAAAEKAREKYPPKVQGGIGVGITQIPITTAKRKPKRRA
Ga0187801_100451812	3300017933	Freshwater Sediment	VQQHAGQHYKRGYPDRISKPFTTKAAAEKAREKYPPKVQGGIGVGITQIPITTAKRKPKRRA
Ga0187808_100596012	3300017942	Freshwater Sediment	VQQHAGQHYKKGYPDRISKPFTTKAAAEKAREKYPPKVQGGIGVGITQIPITTAKRKPKRRA
Ga0187778_100339761	3300017961	Tropical Peatland	NGVIGKVRKRCLIGFLMAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPITTAKRKPKRRS
Ga0187804_105455972	3300018006	Freshwater Sediment	HYKKGYPDRISKPFTTKAAAEKAREKYPPKVQGGIGVGITQIPITTAKRKPKRRA
Ga0187805_101815162	3300018007	Freshwater Sediment	MAKFRYEWFLFDYKKGYPDRISKPFKTKEAAEKARGKYSPKVRGGIGVGISQIPITTAKRKPKRRS
Ga0187805_102806022	3300018007	Freshwater Sediment	MAKFRYEWFLFGYKDGVPDVISKPFKTKAAAEKAREKYPPKVRGGIGVGIRQIPVTGAKRKTKRRSS
Ga0187771_109062612	3300018088	Tropical Peatland	MARFRYEWFLFAYKDGVPDVISKPFKTKAAAEKARDKYTPKVRGGIGAGIRQIPVTGAKRRPKQRSS
Ga0187771_116637171	3300018088	Tropical Peatland	MAKFRYEWLLFAYKDGVPDFISKPFKTKAAAEKAREKYPPKVRGGIGVGIRQIPVTGAKRKTKRRN
Ga0179592_101326801	3300020199	Vadose Zone Soil	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPKVRGGIGVGISQIPITTPKRKLKR
Ga0210407_10000075111	3300020579	Soil	MAKFRYESFLFGYKDGVPDVISKPFKTKAAAEKARGKYPPKVRGGIGVGINQIPVTGTKRKTKRRSS
Ga0210403_100001838	3300020580	Soil	MVKFRYEWFLFDYKKGYPDRISKPFKTKTAAEKARGKYPPKVRGGIGVGISQIPITTAKRKPKRRS
Ga0210403_101239534	3300020580	Soil	MANFRCEWFLFNYKDGVPDVMSKPFKAKADAEKAREKYPVKERGGIAVGVRRIPVIEPKRRT
Ga0210403_103166872	3300020580	Soil	MVKFRYEWFLFDYKDGVPDVMSKPFKTKAAAEKAREKYPPKVRGGIGVGISQIPVNRTKRKPKQRSS
Ga0210403_104733072	3300020580	Soil	MVKFRYEWFLFDYKKGFPDRLSKPFKTKAAAEKAREKYPAKQRGGIGVAICQIPVTRSKRKS
Ga0210399_1000002565	3300020581	Soil	MVKFRYEWFLFDYKDGVPDVMSKPFKTKAAAEKAREKYPPKVRGGIGVGISQIPVNRAKRKPKQRSS
Ga0210399_101712732	3300020581	Soil	MVKFRYEWFLFDYKKGFPDRLSKPFKTKAAAEKAREKYPPKERGGIGVANCQIPVTRPKRKS
Ga0210395_1000007475	3300020582	Soil	MAKFRYEWFLFNYKKGYPHRISKPFKTKAGAEQARGKYAPKMRGGIGVGISQIPVTTAKRKPKRKS
Ga0210401_100163013	3300020583	Soil	MANFRYEWFLFNYKKGFPDRISRFFKTKAGAEKAREKYPEKERGGIGVGICQIPVTKPKRKK
Ga0210401_100479781	3300020583	Soil	MAKFRCEWFLFDYKKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPVTTGKRKPKRRS
Ga0210401_106661141	3300020583	Soil	VVKFRYEWFLFDYKDGVPDVMSKPFKTKAAAEKAREKYPPKVRGGIGVGISQIPVNRAKRKPRQRSS
Ga0179596_104206771	3300021086	Vadose Zone Soil	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPITTAKRKPNRRS
Ga0210406_100642734	3300021168	Soil	MAKFRYEWFLFDYEKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPITTVKRKPNRRSW
Ga0210406_100978031	3300021168	Soil	MVKFRYEWFLFDYKKGFPDRLSRPFKTKAAAEKAREKYPAKERGGIGVAICQIPVTRPKRKS
Ga0210406_102009013	3300021168	Soil	MANFRYEWFLFNYKDGVPDVMSKAFKAKADAEKAREKYPVKERGGIGVGVRRIPISTPKRKT
Ga0210400_102425232	3300021170	Soil	MAEFRYEWFLFDYKKGYPDRISKPFKTKAAAEKARRKYPPKVRGGIGVGISQIPVTTGKRKPKRRS
Ga0210408_107058732	3300021178	Soil	MAKFRCEWFLFDYKKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPITAS
Ga0210408_115028952	3300021178	Soil	LFDYKKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPITASKRKPKRGS
Ga0210396_104076092	3300021180	Soil	MVKFRYEWFLFDYKDGVPDVISKRFKTKAAAEKARGKYPPKVRGGIGVGINQIPVTGAKRKTKPRSA
Ga0210393_1000013337	3300021401	Soil	MAKLRYEWFLFHYKDGVPDVVSKPFKTKADAEKARDKYPVKKRGGVGVGIRQIPINRKR
Ga0210387_101508173	3300021405	Soil	MAKVRYEWFLFGYKDGVPDVISKPFKTKAAAEKARGKYPSKVRGGIGVGIRQIPVTRAKPKRKPQTV
Ga0210386_114832951	3300021406	Soil	MVKFRYEWFLFDYKDGVPDVISKRFKTKAAAEKARGKYPPKVRGGIGVGINQIPVTGAKRKTEPRSS
Ga0210383_106433392	3300021407	Soil	MAKFRYEWFLFDYKDGVPDVMSKPFKTKADAEKARERYPVKDRGGIGVGVRRIPVTKPKRKR
Ga0210384_1000071729	3300021432	Soil	MAKFRYEWFLFGYKDGVPDVISKPFKTKAAAEKARGKYPPKMRGGIGVGIRQIPVTRAKVKPA
Ga0210384_100190113	3300021432	Soil	MAKFRYEWFLFDYKKGYPDTISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPITTAKRKPKRRS
Ga0210391_101239331	3300021433	Soil	EWFLFDYKDGVPDVMSKPFKTKAAAEKAREKYPPKVRGGIGVGISQIPVNRAKRKPKQRS
Ga0210402_107626232	3300021478	Soil	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKARGKYAPKVRGGIGVGISQIPVTTAKRKPKRKS
Ga0210410_1000011297	3300021479	Soil	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPKVRGGIGVGISQIPITTPKR
Ga0210409_103415452	3300021559	Soil	MAKFRYEWFLFGYKDGVPDVISKPFKTKAAAEKARGKYPPKVRGGIGVGINQIPVTGTKRKTKRKTKRRSSR
Ga0207684_111000332	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MAKFRYEWFLFDYEKGYPDRISKPFKTKAAAEKAREKHPPKVRGGIGVGISQIPITTPKRKLKR
Ga0207646_112285961	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MAKFRYEWFLFDYEKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVDISQIPITTAKRKPKRRS
Ga0209158_10174382	3300026333	Soil	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPITTAKRKPKRRS
Ga0257154_10119284	3300026467	Soil	YEWFLFDYKEGFPDRLSKPFKTKAAAEKAREKYPAKARGGIGVAICQIPVSRPKRKS
Ga0257164_11004122	3300026497	Soil	MAKFRYEWFLFDYKDGVPDVVSKPFKTKADAEKAREKYPVKERGRIGVGIRQIPVTRPKRKT
Ga0257158_10263372	3300026515	Soil	MVKFRYEWFLFDYKKGFPDRLSKPFKTKAAAEKAREKYPAKERGGIGVANCQIPVSRPKRKS
Ga0209648_101610801	3300026551	Grasslands Soil	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPKVRGGIGVGISQIPITTPKRKLKRRS
Ga0209648_107053421	3300026551	Grasslands Soil	MAKFGYEWFLFGYKDGVPDVISKPFKTKAAAEKARGKYPPKVRGGIGVGIRQIPVTRAKRKPKQRSS
Ga0209219_10784121	3300027565	Forest Soil	MVKFRYEWFLFDYKKGFPDRLSRPFKTKAGAEKAREKYPAKERGGIGVANCQIPVTRPKRKS
Ga0209076_10801261	3300027643	Vadose Zone Soil	LMAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVGISQIPVTTAKRKPKPRS
Ga0209274_105501052	3300027853	Soil	TKKGYPDRISKPFKTKAAAEKAREKYAPKMRGGIGVGISQIPVTTAKRKPKRKS
Ga0209517_100373624	3300027854	Peatlands Soil	MAKFRYEWFLFGYKDGVPDVISRPFKTKAAAEKARGKYPPKVRGGIGVGIRQIPVTRAKRKPKQHSS
Ga0209166_105745061	3300027857	Surface Soil	MAKFKYEWFLFGYKNGVPDIFSKPFKTKEAAEKARGKYPPKMQGGIGVGISQIPITRAKRKPKQHSS
Ga0209701_106134342	3300027862	Vadose Zone Soil	MAKFRYEWFLFDYKDGVPDVVSKPFKTKADAEKAREKYPVKERGGIGVGIRQIPVTRPKRKT
Ga0209526_101904612	3300028047	Forest Soil	MVKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPKVRGGIGVGISQIPITTPKRKLKRRS
Ga0308309_117618372	3300028906	Soil	MGKFRYEWFLFNYKDGVPDVISKPFRTKAAAEKARGKYPPKVRGGIGVGIRQIPVTVAKRKPKQRSS
Ga0170834_1053641772	3300031057	Forest Soil	MPGRISGRISHGHEWFLFDYKKGFPDRISRLFKTKAGAEKAREKYPAKERGGIGVAICQIPVTRPKRKT
Ga0170834_1065392011	3300031057	Forest Soil	MQSSAAGRCLLRFLMAKFRYEWFLFGYKDGVPDVMSKPFKTKAAAEKVRAKYPPNVRGGIGVGIRQIPVIRVKRKPKQRSS
Ga0170824_1237719421	3300031231	Forest Soil	MVKFRYEWFLFDYKDGVPDVISKRFKTKAAAEKARGKYPLKVRGGIGVGINKIPVTGAKRKTKPRSA
Ga0307476_100429982	3300031715	Hardwood Forest Soil	MAKFRYEWFLFDYKKGYPDRISKPFKTKAAAEKARGKYPPRVRGGIGVGISQIPITTAKRKPKRTS
Ga0307477_100226343	3300031753	Hardwood Forest Soil	MAKFRHEWFLFDYKKGYPDRISKPFETKEAAEKARGKYPPKVRGGIGVGISQIPITTAKRKPKRRS
Ga0307478_100792233	3300031823	Hardwood Forest Soil	MAKVRYEWFLFDYKKGYPDRISKPFKTKAAAEKAREKHPPKVRGGIGVGISQIPIATPKRKLKRRS
Ga0307471_1013148212	3300032180	Hardwood Forest Soil	MAKFRYEWFLFDYEKGYPDRISKPFKTKAAAEKARGKYPPKVRGGIGVGISQILITTVKRKPKRTSW

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087672

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences