Metagenome / Metatranscriptome Family F087815

Basic Information
Family ID	F087815
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	58 residues
Representative Sequence	MRDVLKELNDRNPSDVRALDERGLRRFEVLCEAWAKIAEAERARRQSLPDTER
Number of Associated Samples	84
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	71.82 %
% of genes near scaffold ends (potentially truncated)	29.09 %
% of genes from short scaffolds (< 2000 bps)	90.91 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Most Common Taxonomy
Group	Unclassified (68.182 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (29.091 % of family members)
Environment Ontology (ENVO)	Unclassified (26.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.091 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.56% β-sheet: 0.00% Coil/Unstructured: 44.44%
Feature Viewer

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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF06472	ABC_membrane_2	3.64
PF12073	DUF3553	2.73
PF00072	Response_reg	1.82
PF00011	HSP20	1.82
PF01272	GreA_GreB	1.82
PF12973	Cupin_7	1.82
PF01925	TauE	0.91
PF07729	FCD	0.91
PF13472	Lipase_GDSL_2	0.91
PF02163	Peptidase_M50	0.91
PF07045	DUF1330	0.91
PF12161	HsdM_N	0.91
PF04519	Bactofilin	0.91
PF07883	Cupin_2	0.91
PF04028	DUF374	0.91
PF14375	Cys_rich_CWC	0.91
PF01068	DNA_ligase_A_M	0.91
PF01814	Hemerythrin	0.91
PF12655	DUF3787	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	1.82
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	1.82
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.91
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.91
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.91
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.91
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.91
COG2121	Uncharacterized conserved protein, lysophospholipid acyltransferase (LPLAT) superfamily	Function unknown [S]	0.91
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.91
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.91

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.18 %
All Organisms	root	All Organisms	31.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.18 %
cellular organisms	root	All Organisms → cellular organisms	31.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.18 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	31.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.18 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.82 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.18 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.27 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.64 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.18 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.64 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	2.73 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.82 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.18 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.64 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	2.73 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1.82 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.18 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.64 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	2.73 %
Methylobacterium nodulans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nodulans	1.82 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.18 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.64 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	2.73 %
Methylobacterium nodulans ORS 2060	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nodulans → Methylobacterium nodulans ORS 2060	1.82 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_117513353	Not Available	1016	Open in IMG/M
3300004114\|Ga0062593_100164501	Not Available	1708	Open in IMG/M
3300004114\|Ga0062593_100883544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	901	Open in IMG/M
3300004157\|Ga0062590_103009355	Not Available	505	Open in IMG/M
3300004480\|Ga0062592_101010856	Not Available	761	Open in IMG/M
3300004643\|Ga0062591_100458832	Not Available	1078	Open in IMG/M
3300005466\|Ga0070685_11367739	Not Available	542	Open in IMG/M
3300005561\|Ga0066699_10347443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	1060	Open in IMG/M
3300005842\|Ga0068858_101891136	Not Available	590	Open in IMG/M
3300005994\|Ga0066789_10367222	Not Available	601	Open in IMG/M
3300006042\|Ga0075368_10192264	Not Available	862	Open in IMG/M
3300006046\|Ga0066652_101205808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	716	Open in IMG/M
3300006046\|Ga0066652_101457676	Not Available	637	Open in IMG/M
3300006048\|Ga0075363_100284655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	957	Open in IMG/M
3300006049\|Ga0075417_10227578	Not Available	889	Open in IMG/M
3300006163\|Ga0070715_10269842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	897	Open in IMG/M
3300006172\|Ga0075018_10354542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	736	Open in IMG/M
3300006178\|Ga0075367_10045017	Not Available	2589	Open in IMG/M
3300006755\|Ga0079222_11040849	Not Available	710	Open in IMG/M
3300006844\|Ga0075428_100025667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6525	Open in IMG/M
3300006844\|Ga0075428_100070725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3814	Open in IMG/M
3300006844\|Ga0075428_100413654	Not Available	1445	Open in IMG/M
3300006844\|Ga0075428_100432631	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1410	Open in IMG/M
3300006844\|Ga0075428_100551690	Not Available	1232	Open in IMG/M
3300006844\|Ga0075428_100923956	Not Available	925	Open in IMG/M
3300006844\|Ga0075428_100937251	Not Available	918	Open in IMG/M
3300006844\|Ga0075428_101846291	Not Available	628	Open in IMG/M
3300006845\|Ga0075421_100611395	All Organisms → cellular organisms → Bacteria → Proteobacteria	1279	Open in IMG/M
3300006846\|Ga0075430_100562057	Not Available	941	Open in IMG/M
3300006847\|Ga0075431_102118090	Not Available	517	Open in IMG/M
3300006871\|Ga0075434_102224097	Not Available	552	Open in IMG/M
3300006880\|Ga0075429_100027873	All Organisms → cellular organisms → Bacteria → Proteobacteria	4903	Open in IMG/M
3300006880\|Ga0075429_100469457	Not Available	1102	Open in IMG/M
3300006880\|Ga0075429_101609557	Not Available	564	Open in IMG/M
3300006903\|Ga0075426_10120794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nodulans → Methylobacterium nodulans ORS 2060	1883	Open in IMG/M
3300006903\|Ga0075426_10268282	Not Available	1245	Open in IMG/M
3300006904\|Ga0075424_102147123	Not Available	588	Open in IMG/M
3300006969\|Ga0075419_10232063	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300007004\|Ga0079218_12228085	Not Available	638	Open in IMG/M
3300009012\|Ga0066710_103300990	Not Available	616	Open in IMG/M
3300009012\|Ga0066710_103824179	Not Available	565	Open in IMG/M
3300009100\|Ga0075418_10861548	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300009100\|Ga0075418_11733202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	679	Open in IMG/M
3300009137\|Ga0066709_101614610	Not Available	927	Open in IMG/M
3300009147\|Ga0114129_10914873	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1111	Open in IMG/M
3300009147\|Ga0114129_11259635	Not Available	918	Open in IMG/M
3300009148\|Ga0105243_11261562	Not Available	755	Open in IMG/M
3300009162\|Ga0075423_11803941	Not Available	660	Open in IMG/M
3300009177\|Ga0105248_11875504	Not Available	680	Open in IMG/M
3300009553\|Ga0105249_10407165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1392	Open in IMG/M
3300010154\|Ga0127503_10853232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1121	Open in IMG/M
3300010375\|Ga0105239_13441774	Not Available	515	Open in IMG/M
3300010399\|Ga0134127_11548383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	736	Open in IMG/M
3300010400\|Ga0134122_11533977	Not Available	687	Open in IMG/M
3300010400\|Ga0134122_13221830	Not Available	512	Open in IMG/M
3300012198\|Ga0137364_11311816	Not Available	539	Open in IMG/M
3300012685\|Ga0137397_10683003	Not Available	763	Open in IMG/M
3300012925\|Ga0137419_11737558	Not Available	533	Open in IMG/M
3300012957\|Ga0164303_10187916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1132	Open in IMG/M
3300013297\|Ga0157378_12633320	Not Available	555	Open in IMG/M
3300013308\|Ga0157375_11498261	Not Available	796	Open in IMG/M
3300014325\|Ga0163163_11177109	Not Available	829	Open in IMG/M
3300015084\|Ga0167654_1009853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1644	Open in IMG/M
3300015195\|Ga0167658_1005550	All Organisms → cellular organisms → Bacteria	4303	Open in IMG/M
3300015195\|Ga0167658_1029461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1458	Open in IMG/M
3300015201\|Ga0173478_10438172	Not Available	637	Open in IMG/M
3300015258\|Ga0180093_1071133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	816	Open in IMG/M
3300015371\|Ga0132258_10096100	All Organisms → cellular organisms → Bacteria → Proteobacteria	6964	Open in IMG/M
3300015371\|Ga0132258_10100506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6813	Open in IMG/M
3300015374\|Ga0132255_106128870	Not Available	509	Open in IMG/M
3300017792\|Ga0163161_12109163	Not Available	501	Open in IMG/M
3300018027\|Ga0184605_10470817	Not Available	551	Open in IMG/M
3300018028\|Ga0184608_10254630	Not Available	772	Open in IMG/M
3300018071\|Ga0184618_10460410	Not Available	535	Open in IMG/M
3300018072\|Ga0184635_10160220	Not Available	899	Open in IMG/M
3300018083\|Ga0184628_10136283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1274	Open in IMG/M
3300018429\|Ga0190272_10414288	Not Available	1106	Open in IMG/M
3300018429\|Ga0190272_10421919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1099	Open in IMG/M
3300018429\|Ga0190272_11805338	Not Available	638	Open in IMG/M
3300018429\|Ga0190272_12594175	Not Available	554	Open in IMG/M
3300018468\|Ga0066662_12048034	Not Available	599	Open in IMG/M
3300018469\|Ga0190270_12201000	Not Available	612	Open in IMG/M
3300018469\|Ga0190270_12537051	Not Available	575	Open in IMG/M
3300018476\|Ga0190274_12092790	Not Available	663	Open in IMG/M
3300018482\|Ga0066669_11659066	Not Available	585	Open in IMG/M
3300019884\|Ga0193741_1048541	Not Available	1095	Open in IMG/M
3300020020\|Ga0193738_1050255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1259	Open in IMG/M
3300020020\|Ga0193738_1064083	Not Available	1092	Open in IMG/M
3300021082\|Ga0210380_10341889	Not Available	683	Open in IMG/M
3300021168\|Ga0210406_10087758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium nodulans → Methylobacterium nodulans ORS 2060	2654	Open in IMG/M
3300021478\|Ga0210402_11208185	Not Available	683	Open in IMG/M
3300024288\|Ga0179589_10439307	Not Available	601	Open in IMG/M
3300025914\|Ga0207671_10962925	Not Available	673	Open in IMG/M
3300025923\|Ga0207681_10568300	Not Available	935	Open in IMG/M
3300026075\|Ga0207708_10481641	Not Available	1037	Open in IMG/M
3300026118\|Ga0207675_101578731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300026498\|Ga0257156_1087647	Not Available	647	Open in IMG/M
3300027669\|Ga0208981_1175554	Not Available	541	Open in IMG/M
3300027821\|Ga0209811_10316520	Not Available	602	Open in IMG/M
3300027866\|Ga0209813_10164084	Not Available	803	Open in IMG/M
3300027873\|Ga0209814_10210185	Not Available	841	Open in IMG/M
3300027880\|Ga0209481_10010469	All Organisms → cellular organisms → Bacteria	3989	Open in IMG/M
3300027880\|Ga0209481_10020224	All Organisms → cellular organisms → Bacteria → Proteobacteria	2940	Open in IMG/M
3300027880\|Ga0209481_10397340	Not Available	707	Open in IMG/M
3300027880\|Ga0209481_10413534	Not Available	692	Open in IMG/M
3300027907\|Ga0207428_11276862	Not Available	509	Open in IMG/M
3300027909\|Ga0209382_10571518	All Organisms → cellular organisms → Bacteria	1235	Open in IMG/M
3300030990\|Ga0308178_1076567	Not Available	673	Open in IMG/M
3300031740\|Ga0307468_100360981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1089	Open in IMG/M
3300032000\|Ga0310903_10811555	Not Available	512	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.64%
Host-Associated	Host-Associated	46.36%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	46.36%
Terrestrial	Environmental → Terrestrial	45.45%
Aquatic	Environmental → Aquatic	8.18%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.36%
Sediment	Environmental → Aquatic → Sediment	6.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.45%
Roots	Host-Associated → Plants → Roots	4.55%
Freshwater	Environmental → Aquatic → Freshwater	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	35.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.36%
Loam	Environmental → Terrestrial → Soil → Loam	3.64%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.73%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	35.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.18%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.36%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.64%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	3.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	29.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.55%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.64%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	3.64%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.73%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.91%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.91%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015084	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-5a, rocky medial moraine)	Environmental	Open in IMG/M
3300015195	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-6c, vegetation/snow interface)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015258	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1175133534	3300000956	Soil	MQHILKQLNDCNPSEVQALDERALRRFEALCEAWAKIAEAERARRSSLPSRARVSNAPH*
Ga0062593_1001645013	3300004114	Soil	MRDILKELNDRNPGDVRVLDDRGLHRFEALCEVWAKIAEAERARRQALPRPSPN*
Ga0062593_1008835442	3300004114	Soil	MHDILKQLNDRNPSDVRALDERGLRRLEVLCEAWAKIAEAELARRRSLPLQAPPLSARN*
Ga0062590_1030093553	3300004157	Soil	RNPGDVRVLDDRGLHRFEALCEVWAKIAEAERARRQALPRPSPN*
Ga0062592_1010108561	3300004480	Soil	LNDRNPGDVRVLDDRGLHRFEALCEVWAKIAEAERARRQALPRPSPN*
Ga0062591_1004588324	3300004643	Soil	NDRNPGDVRVLDDRGLHRFEALCEVWAKIAEAERARRQALPRPSPN*
Ga0070685_113677391	3300005466	Switchgrass Rhizosphere	MDHVGVPMQHILKQLNDCNPSEVQALDERALRRFEALCEAWAKIAEAERARRSSLPS
Ga0066699_103474432	3300005561	Soil	MHDILKQLNDRNPSDVRTLDDRGLRRLEVLCEHWAKIAEAELARRKSLPLQASALSSQN*
Ga0068858_1018911361	3300005842	Switchgrass Rhizosphere	NILKQLNDCNPSEVQALDERALGRFEALCEAWAKIAEAERARRRSLPAHERVSNTPH*
Ga0066789_103672222	3300005994	Soil	NFGTWGSAMHDVLKQLNDRNPSDLQVLDERSLRRLEVLCEAWAKIAEAELARRKSLPLQASALSSQN*
Ga0075368_101922641	3300006042	Populus Endosphere	QLNDRNPSDLQSLDDGALQRLESLCETWAKKAEAELARRRQLPMPAASKSH*
Ga0066652_1012058082	3300006046	Soil	MHDILKQLNDRNPSDVRALDERGLRRLEVLCEAWAKIAEAELARRRSLPLQAPPLSAQN*
Ga0066652_1014576762	3300006046	Soil	MHDILKQLNDRNPCDVRALDERGLRRFEVLCETWAKIAEAELARRRSQPAQASGLISPN*
Ga0075363_1002846552	3300006048	Populus Endosphere	MHDVLKQLNDRNPSDLQSLDDGALQRLESLCETWAKKAEAELARRRQLPMPAASKSH*
Ga0075417_102275781	3300006049	Populus Rhizosphere	MRDVLKELNDRNPSDVRALDERGLLRFEVLCEAWAKIAEAERARRQSLPETERTFAPRPRTPS*
Ga0070715_102698421	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	LKQLNDRNPSDVRILDERALRRFEALCEAWAKIAETELARRRSLPFQAPPSNAQN*
Ga0075018_103545422	3300006172	Watersheds	MHDILKQLNDRNPCDVRALDERGLRRFEVLCEKWAKIAEAELARRKSLPTHASALSSQN*
Ga0075367_100450173	3300006178	Populus Endosphere	MHDVLKQLNDRNPSDLQSLDEPALRRLESLCESWAKKAEAELARRKQLPITDAGGIGH*
Ga0079222_110408491	3300006755	Agricultural Soil	MHEVLKQLNDHIPSDVRILDERALRRFEALCDAWAKIAEAELARRRSLPSDASQSNAAP*
Ga0075428_1000256677	3300006844	Populus Rhizosphere	MRDVLKELNDRNPSDVRALDERGLLRFEVLCEAWAKIAEAERARRQSLPETERTFTPRPRTLS*
Ga0075428_1000707257	3300006844	Populus Rhizosphere	MRDILKELNDRNPSDVRALDERGLRRFEVLCEAWAKIAEAERARRQSLPETQRDPGHS*
Ga0075428_1004136543	3300006844	Populus Rhizosphere	MRDVLKELNDRNPSDVRVLDERGLRRFEVLCEAWAKIAEAERARRQSLPETERTFTPRPRTLS*
Ga0075428_1004326311	3300006844	Populus Rhizosphere	SAMRDILKELNDRSPSDVRALDERGLRRFEALCETWAKIAEAERARRQALPRPSPDLNSQH*
Ga0075428_1005516904	3300006844	Populus Rhizosphere	MILAAYGSQSAMRDILKELNDGNPSDVRVLDERGLRRFEVLREVWAKIAEAERARRQSLPEPQLKAPGDS*
Ga0075428_1009239563	3300006844	Populus Rhizosphere	MRDILKELNDRNPGDVRVLDDRGLHRFEALCEVWAKIAEAERARRQALPRPSSEPNSQH*
Ga0075428_1009372511	3300006844	Populus Rhizosphere	MRDVLKELNDRNPSDVRALDERGLRRFEVLCEAWAKIAEAERARRQSLPETERNFTSRSRTLS*
Ga0075428_1018462912	3300006844	Populus Rhizosphere	MRDVLKELNDRNPSDVRALDERGLRRFEVLCEAWAKIAEAERARRQSLPDTERNFAPRS*
Ga0075421_1006113953	3300006845	Populus Rhizosphere	MRDILKELNDRNPSDVRVLDERGLRRFEVLCEAWAKIAEAERARRQSLPEPQRKPPGDF*
Ga0075430_1005620572	3300006846	Populus Rhizosphere	SWITGGSAMRDILKELNDRNPSDVRVLDERGLRRFEVLCEAWAKIAEAERARRQSLPETQRDPGHS*
Ga0075431_1021180902	3300006847	Populus Rhizosphere	MRDVLKELNDRNPSDVRALDERGLQRFEVLCEAWAKIAEAERARRQSLPGTERISLRDP
Ga0075434_1022240972	3300006871	Populus Rhizosphere	MRDILKELNDRNPSDVQQLDERGLRRFEALCETWAKIAEAERARRQALPRPSLDLTSQH*
Ga0075429_1000278736	3300006880	Populus Rhizosphere	MRDVLKELNDRNPSDVRALDERGLLRFEVLCEAWAKIAEAERARRQSLPETERTFTPSPRTLS*
Ga0075429_1004694573	3300006880	Populus Rhizosphere	SAMRDILKELNDRNPSDVRALDERGLRRFEVLCEAWAKIAEAERARRQSLPETQRDPGHS
Ga0075429_1016095571	3300006880	Populus Rhizosphere	MRDILKELNDRNPSDVRALDERGLRRFEVLCEVWAKIAEAERARRTSLPETERNSPPRAQCS*
Ga0075426_101207943	3300006903	Populus Rhizosphere	MQDVLKQLNDRNPSDVRILDERALRRFEALCEAWAKIAETELARRRSLPFQAPPSNAQN*
Ga0075426_102682823	3300006903	Populus Rhizosphere	MQDVLKQLNDRNPSDVRILDGRALRRFEALCEAWAKIAEAELARRRSLPSQVSQSDAPI*
Ga0075424_1021471231	3300006904	Populus Rhizosphere	MHDVLKQLNDRNPSDLHTLDERALQRLESLCENWAKKAEAELARRRALPLTVAGADRS
Ga0075419_102320631	3300006969	Populus Rhizosphere	MRDVLKELNDRNPSDVRALDERGLRRFEVLCEAWAKIAEAERARRQSLPDAERNFAPRPRTLS*
Ga0079218_122280851	3300007004	Agricultural Soil	MRDVLKELNDRNPSDVRALDERGLRRFEVLCEAWAKIAEAERARRQSLPDTERNFAPRSK
Ga0066710_1033009901	3300009012	Grasslands Soil	WITGGSAMRDILKELNDRNPSDVQQLDERGLRRFEALCETWAKIAEAERARRQALPRPSPKLNTQH
Ga0066710_1038241792	3300009012	Grasslands Soil	MRDILKELNDRNPSDVRALDEVALHRFEVLCEAWAKIAEAELARRKSLPRSAIECTSADH
Ga0075418_108615481	3300009100	Populus Rhizosphere	DILKELNDRNPSDVRALDERGLRRFEVLCEVWAKIAEAERARRKSLPETERNFPT*
Ga0075418_117332022	3300009100	Populus Rhizosphere	MRDILKELNDRNPGDVRVLDERGLQRFEALCEVWAKIAEAERARRQALPRPSPERIPVNHS*
Ga0066709_1016146102	3300009137	Grasslands Soil	MQDILKQLNDRNPSDVRALDERGLRRLEVLCEAWAKIAEAELARRKSLPLQAPALSSQN*
Ga0114129_109148733	3300009147	Populus Rhizosphere	GSAMRDILKELNDRNPSDVRVLDERGLRRFEALCETWAKIAEAECARRQALPRPSPDLNSQH*
Ga0114129_112596352	3300009147	Populus Rhizosphere	DHEGGSVMRDVLKELNDRNPSDVRALDERGLRRFEVLCEAWAKIAEAERARRQSLPDTERNFAPRS*
Ga0105243_112615623	3300009148	Miscanthus Rhizosphere	LNDRNPSDVRALDERGLRRFEALCETWAKIAEAERARRQALPRPSPDSNSQH*
Ga0075423_118039412	3300009162	Populus Rhizosphere	MRDILKELNDRNPSDVQDLDERGLRRFEALCETWAKIAEAERARRQALPRPRPN*
Ga0105248_118755041	3300009177	Switchgrass Rhizosphere	MQNILKQLNDCNPSEVQALDERALGRFEALCEAWAKIAEAERARRRSLPARAPVSDTPH*
Ga0105249_104071653	3300009553	Switchgrass Rhizosphere	MRDILKELNDRNPCDVRALDERGLQRFEALCETWAKIAEAERARRQALPKPSSEPNSQH*
Ga0127503_108532323	3300010154	Soil	MHDVLKQLNDRNPSDLQTLDERALQRLESLCENWARKAEAELARRGALPLAVAGRR*
Ga0105239_134417743	3300010375	Corn Rhizosphere	MQNNLKQLNDCNPSEVQALDERALGRFEALCEAWAKIAEAERARRRSLPARARVSNTPH*
Ga0134127_115483832	3300010399	Terrestrial Soil	MRDILKELNDRNPCDVRALDERGLQRFEALCETWAKIAEAERARRQALPRSFREPNSQH*
Ga0134122_115339771	3300010400	Terrestrial Soil	ILKELNDRNPGDVRVLDDRGLHRFEALCEVWAKIAEAERARRQALPRPSPN*
Ga0134122_132218302	3300010400	Terrestrial Soil	MHDILKQLNDRNPSDVRALDERGLRRLEVLCEAWAKIAEAELARRKSLPMR
Ga0137364_113118161	3300012198	Vadose Zone Soil	MHDILKQLNDRNPSDVRALDERGLRRLEVLCEAWAKIAEAELARRKSLPLQAPALSSQN*
Ga0137397_106830031	3300012685	Vadose Zone Soil	MRDILKELNDRSPGDVRVLDDRGLHRFEALCEVWAKIAEAERARRQALPRPSPN*
Ga0137419_117375582	3300012925	Vadose Zone Soil	MHDILKQLNDRNPCDVRALDERGLRRFEVLCETWAKIAETELARRRSQPAQASGLISPN*
Ga0164303_101879163	3300012957	Soil	VIHDILKQLNDRNPCDVRALDERGLRRFEVLCEKWAKIAEAELARRKSLPTHASALSSQN
Ga0157378_126333202	3300013297	Miscanthus Rhizosphere	MENILKQLNDCNPSEVQALDERALGRFEALCESWAKIAEAERARRRSLPAHERVSNTPH*
Ga0157375_114982612	3300013308	Miscanthus Rhizosphere	MHDVLKQLNDRNPSDLQSLDEGALQRLESLCETWAKKAEAELARRKQLPVTPTVGKKGH*
Ga0163163_111771092	3300014325	Switchgrass Rhizosphere	MENILKQLNDCNPSEVQALDERALGRFEALCEAWAKIAEAERARRRSLPATRVSNTPH*
Ga0167654_10098533	3300015084	Glacier Forefield Soil	MHDVLKQLNDRNPSDLQSLDEGALQRLESLCETWAKKAEAELARRRQLPAPAVSKTH*
Ga0167658_10055507	3300015195	Glacier Forefield Soil	MHDILKQLNDRNPSDVRTLDERGLRRLEVLCETWAKIAEAELARRRSQPAQAPAQRT*
Ga0167658_10294611	3300015195	Glacier Forefield Soil	MQDILKQLNDRNPSDVRALDERGLRRLEVLCEAWAKIAEAELARRKSLPTQASELHTHAGIGDLEMR
Ga0173478_104381721	3300015201	Soil	MHDILKQLNDRNPSDVRTLDDRSLRRLEALCERWAKIAEAELARRKSLPLQASALSSQN*
Ga0180093_10711331	3300015258	Soil	MRDILKELNDRNPSEVKSLDEGGLRRFESLCEAWAKIAEAELARRKSLARNEVSAIPS*
Ga0132258_1009610012	3300015371	Arabidopsis Rhizosphere	MQDVLKQLNDRNPSDVRILDERALRRFEALCEAWAKIAEAELARRQSLPFQAPPSNARN*
Ga0132258_101005062	3300015371	Arabidopsis Rhizosphere	MQDVLKQLNDRNPSDLRILDERALRRFEALCEAWAKIAEAELARRRSLPSQASLIL*
Ga0132255_1061288701	3300015374	Arabidopsis Rhizosphere	KELNDRNPSDVQDLDERGLRRFETLCEGWAKVAEAEFARRKSQTRPSPKCS*
Ga0163161_121091631	3300017792	Switchgrass Rhizosphere	PVPIWIIVGVQVMHDILKQLNDRNPSDLQALDEGGLRRLEVLCETWAKIADAELARRRSLPRRAPPLSARN
Ga0184605_104708172	3300018027	Groundwater Sediment	MHDILKQLNDRNPSDLRALDERGLRRLEVLCEAWAKIAEAELARRKSLPIRPSELSSQH
Ga0184608_102546302	3300018028	Groundwater Sediment	MRDILKQLNDRNPSDVRALDERGLRRLEVLCEAWAKIAEAELARRRSLPMRPSELSSQH
Ga0184618_104604102	3300018071	Groundwater Sediment	MDYGGSVMHDILKQLNDRNPSDVRALDERGLRRLEALCEAWAKIAEAELARRRSLPIRPSELSSH
Ga0184635_101602201	3300018072	Groundwater Sediment	MRDILKELNDRNPGDVRVLDDRGLHRFEALCEVWAKIAEAERARRQALPRSSPN
Ga0184628_101362831	3300018083	Groundwater Sediment	MRDILKELNDRNPGDVRVLDDRGLHRFEALCEMWAKIAEEERARRQALPRPSPN
Ga0190272_104142883	3300018429	Soil	MHDILKQLNDRNPSDVRALDERGLRRFEVLCESWAKIAEAELARRKSMPTQASQLTSQN
Ga0190272_104219191	3300018429	Soil	MHDILKVLNDGNPSDVRALDQVGLHRLEVLCEAWAKIAEAELARRKSLPRPSIERNAADH
Ga0190272_118053381	3300018429	Soil	MRDILKELNDRNPSEVKSLDEGGLRRFESLCEAWAKIAEAELARRKSLAR
Ga0190272_125941751	3300018429	Soil	MQDILKQLNDRNPSDVRALDERGLRRFEVLCEAWAKIAEAELARRRSLPMRPSELSSQH
Ga0066662_120480341	3300018468	Grasslands Soil	MHDILKQLNDRNPSDVRTLDDRGLRRLEVLCEAWAKIAEAELARRRSLPLQAPPLSARN
Ga0190270_122010001	3300018469	Soil	MHDILKQLNDRNPSDVRALDERGLRRLEVLCEAWAKIAEAELARRRSLPLQAPLLSVRN
Ga0190270_125370512	3300018469	Soil	SAMRDVLKELNDRNPTDVRALDERGLQRFEVLCEAWAKIAEAERARRQSLPDTERNFAPRPQTLS
Ga0190274_120927902	3300018476	Soil	ILKQLNDRNPSDVRALDERGLRRLEVLCEAWAKIAEAELARRRSLPLQAPPLSARN
Ga0066669_116590662	3300018482	Grasslands Soil	MRDILKELNDRNPSDVQQLDARGLRRFEALCETWAKIAEAERARRQALPRSSPEQNSQH
Ga0193741_10485412	3300019884	Soil	MRDVLKELNDRNPSDVRALDERGLRRFEVLCEAWAKIAEADRARRQSLPDTERNFAPRS
Ga0193738_10502552	3300020020	Soil	MRDVLKELNDRNPSDVRALDERGLRRFEVLCEAWAKIAEAERARRHSLPESQRKVPGGS
Ga0193738_10640833	3300020020	Soil	SWITGGSAMRDILKELNDRNPSDVRALDERGLRRFEVLCEVWAKIAEVERARRKSLPETERNFPT
Ga0210380_103418892	3300021082	Groundwater Sediment	DILKQLNDRNPSDVRALDERGLRRLEVLCEAWAKIAEAELARRRSLPLQAPPLSARN
Ga0210406_100877583	3300021168	Soil	MQDVLKQLNDRNPSDVRILDERALRRFEALCEAWAKIAETELARRRSLPFQAPPSNAQN
Ga0210402_112081852	3300021478	Soil	MHDILKQLNDLNPSDMRTLDERGLRRFEVLCEAWAKTAEAELARRKSLPTQAPTANSPH
Ga0179589_104393072	3300024288	Vadose Zone Soil	MHDVLKQLNDRNPSDLQTLDERALQRLESLCENWAKKAEAELARRRALPLAVAGRR
Ga0207671_109629252	3300025914	Corn Rhizosphere	MQNILKQLNDCNPSEVQALDERALGRFEALCEAWAKIAEAERARRRSLPARARVSNTPH
Ga0207681_105683002	3300025923	Switchgrass Rhizosphere	MRDILKELNDRNPGDVRVLDDRGLHRFEALCEVWAKIAEAERARRQALPSPSPN
Ga0207708_104816412	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MHDVLKQLNDCHPSDLQSLDEQALQRLETLCETWAKKAEAELARRRQLPITAAK
Ga0207675_1015787311	3300026118	Switchgrass Rhizosphere	MHDVLKQLNDCHPSDLQSLDEQALQRLETLCETWAKKAEAELARRRQLPTTAAK
Ga0257156_10876472	3300026498	Soil	MHDILKQLNDRNPCDVRTLDERGLRRFEVLCEKWAKIAEAELARRKSLPTHASALSSQN
Ga0208981_11755542	3300027669	Forest Soil	MHDILKQLNDRNPSDVRALDERSLRRLEVLCEAWAKIAEAELARRKSLPIRPSELSSQH
Ga0209811_103165202	3300027821	Surface Soil	MQDILKQLNDRNPSDVRALDERGLRRLEVLCEAWAKIAEAELARRKSLPLQAPALSSQN
Ga0209813_101640841	3300027866	Populus Endosphere	LKQLNDRNPSDLQSLDDGALQRLESLCETWAKKAEAELARRRQLPMPAASKSH
Ga0209814_102101852	3300027873	Populus Rhizosphere	MRDVLKELNDRNPSDVRALDERGLLRFEVLCEAWAKIAEAERARRQSLPETERTFTPRPRTLS
Ga0209481_100104691	3300027880	Populus Rhizosphere	MRDVLKELNDRNPSDVRALDERGLRRFEVLCEAWAKIAEAERARRQSLPDTERNFAPRS
Ga0209481_100202243	3300027880	Populus Rhizosphere	MRDILKELNDRNPSDVRALDERGLRRFEVLCEVWAKIAEAERARRKSLPETERNFPT
Ga0209481_103973401	3300027880	Populus Rhizosphere	MRDVLKELNDRNPSDVRALDERGLRRFEVLCEAWAKIAEAERARRQSLPDTER
Ga0209481_104135341	3300027880	Populus Rhizosphere	MRDILKELNDRNPSDVRALDERGLRRFEVLCEAWAKIAEAERARRQSLPETQRDPGHS
Ga0207428_112768622	3300027907	Populus Rhizosphere	MRDVLKELNDRNPSDVRVLDERGLRRFEVLCEAWAKIAEAERARRQSLPETERTFTPRPRTLS
Ga0209382_105715183	3300027909	Populus Rhizosphere	MRDILKELNDRNPSDVRVLDERGLRRFEVLCEAWAKIAEAERARRQSLPEPQRKPPGDF
Ga0308178_10765673	3300030990	Soil	MRDILKELNDRNPGDVRALDDRGLHRFEALCEVWAKIAEAERARRQALPRPSPN
Ga0307468_1003609812	3300031740	Hardwood Forest Soil	MHDVLKQLNDRNPSDLQTLDERALQRLESLCENWAKKADAELARRRALPLAVAGRR
Ga0310903_108115552	3300032000	Soil	MRDILKELNDRNPSEVKSLDEGGLRRFESLCEAWAKIAEAELARRKSLARNEVSAIPS

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087815

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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