NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F088052

Metagenome Family F088052

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088052
Family Type Metagenome
Number of Sequences 109
Average Sequence Length 53 residues
Representative Sequence MNNSTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVPLGF
Number of Associated Samples 84
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 11.01 %
% of genes from short scaffolds (< 2000 bps) 99.08 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (93.578 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(58.716 % of family members)
Environment Ontology (ENVO) Unclassified
(88.991 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(88.991 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 35.80%    β-sheet: 0.00%    Coil/Unstructured: 64.20%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.20
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A93.58 %
All OrganismsrootAll Organisms6.42 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005618|Ga0068864_102331180Not Available542Open in IMG/M
3300005843|Ga0068860_102777090Not Available508Open in IMG/M
3300009975|Ga0105129_101493Not Available1041Open in IMG/M
3300009975|Ga0105129_104800Not Available772Open in IMG/M
3300009980|Ga0105135_108842Not Available742Open in IMG/M
3300009989|Ga0105131_122932Not Available630Open in IMG/M
3300009989|Ga0105131_130616Not Available573Open in IMG/M
3300009990|Ga0105132_138621Not Available533Open in IMG/M
3300009990|Ga0105132_145600Not Available502Open in IMG/M
3300009994|Ga0105126_1045588Not Available548Open in IMG/M
3300009995|Ga0105139_1022668Not Available953Open in IMG/M
3300009995|Ga0105139_1027955Not Available891Open in IMG/M
3300010396|Ga0134126_11825291Not Available666Open in IMG/M
3300010401|Ga0134121_12609730Not Available549Open in IMG/M
3300010403|Ga0134123_12621914Not Available571Open in IMG/M
3300014325|Ga0163163_11350347Not Available775Open in IMG/M
3300015273|Ga0182102_1017475Not Available655Open in IMG/M
3300015278|Ga0182099_1017998Not Available741Open in IMG/M
3300015278|Ga0182099_1067269Not Available517Open in IMG/M
3300015284|Ga0182101_1013090Not Available950Open in IMG/M
3300015290|Ga0182105_1092278Not Available534Open in IMG/M
3300015293|Ga0182103_1079972Not Available550Open in IMG/M
3300015297|Ga0182104_1061304Not Available640Open in IMG/M
3300015297|Ga0182104_1114058Not Available513Open in IMG/M
3300015301|Ga0182184_1035075Not Available718Open in IMG/M
3300015301|Ga0182184_1040464Not Available686Open in IMG/M
3300015310|Ga0182162_1064076Not Available653Open in IMG/M
3300015310|Ga0182162_1102738Not Available549Open in IMG/M
3300015310|Ga0182162_1117384Not Available523Open in IMG/M
3300015312|Ga0182168_1124731Not Available522Open in IMG/M
3300015313|Ga0182164_1107810Not Available553Open in IMG/M
3300015316|Ga0182121_1027997Not Available931Open in IMG/M
3300015319|Ga0182130_1101489Not Available564Open in IMG/M
3300015320|Ga0182165_1010820Not Available1235Open in IMG/M
3300015320|Ga0182165_1075835Not Available653Open in IMG/M
3300015324|Ga0182134_1015392Not Available1097Open in IMG/M
3300015325|Ga0182148_1108693Not Available565Open in IMG/M
3300015326|Ga0182166_1039072Not Available804Open in IMG/M
3300015326|Ga0182166_1068592Not Available666Open in IMG/M
3300015327|Ga0182114_1092656Not Available633Open in IMG/M
3300015328|Ga0182153_1010455Not Available1229Open in IMG/M
3300015330|Ga0182152_1073416Not Available674Open in IMG/M
3300015331|Ga0182131_1013992Not Available1158Open in IMG/M
3300015332|Ga0182117_1161529Not Available513Open in IMG/M
3300015334|Ga0182132_1091853Not Available649Open in IMG/M
3300015335|Ga0182116_1061088Not Available785Open in IMG/M
3300015335|Ga0182116_1078080Not Available715Open in IMG/M
3300015336|Ga0182150_1113002Not Available589Open in IMG/M
3300015337|Ga0182151_1144025Not Available534Open in IMG/M
3300015338|Ga0182137_1048675Not Available851Open in IMG/M
3300015338|Ga0182137_1116953Not Available606Open in IMG/M
3300015349|Ga0182185_1144495Not Available706Open in IMG/M
3300015350|Ga0182163_1067182All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta1045Open in IMG/M
3300015350|Ga0182163_1168557Not Available683Open in IMG/M
3300015350|Ga0182163_1209745All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta610Open in IMG/M
3300015352|Ga0182169_1136265Not Available798Open in IMG/M
3300015353|Ga0182179_1248803Not Available573Open in IMG/M
3300015354|Ga0182167_1013896Not Available2218Open in IMG/M
3300015354|Ga0182167_1301399Not Available568Open in IMG/M
3300017412|Ga0182199_1205815Not Available502Open in IMG/M
3300017414|Ga0182195_1150974Not Available589Open in IMG/M
3300017421|Ga0182213_1192926Not Available579Open in IMG/M
3300017422|Ga0182201_1005885Not Available1404Open in IMG/M
3300017422|Ga0182201_1101609Not Available570Open in IMG/M
3300017432|Ga0182196_1023387Not Available950Open in IMG/M
3300017432|Ga0182196_1152825Not Available506Open in IMG/M
3300017439|Ga0182200_1048802Not Available764Open in IMG/M
3300017440|Ga0182214_1135028Not Available542Open in IMG/M
3300017440|Ga0182214_1141453Not Available531Open in IMG/M
3300017445|Ga0182198_1073550Not Available740Open in IMG/M
3300017445|Ga0182198_1181893Not Available525Open in IMG/M
3300017447|Ga0182215_1129519Not Available575Open in IMG/M
3300017692|Ga0182210_1053970Not Available829Open in IMG/M
3300017693|Ga0182216_1067319Not Available805Open in IMG/M
3300017694|Ga0182211_1084281Not Available739Open in IMG/M
3300017694|Ga0182211_1107338Not Available655Open in IMG/M
3300020023|Ga0182178_1006353All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum779Open in IMG/M
3300020033|Ga0182146_101912Not Available737Open in IMG/M
3300020033|Ga0182146_104857Not Available559Open in IMG/M
3300020223|Ga0182118_100829Not Available1160Open in IMG/M
3300025986|Ga0207658_11240402Not Available682Open in IMG/M
3300026035|Ga0207703_11915117All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Cenchrinae → Setaria → Setaria viridis569Open in IMG/M
3300026088|Ga0207641_10423276All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum1283Open in IMG/M
3300026095|Ga0207676_11565885Not Available657Open in IMG/M
3300026118|Ga0207675_102020341Not Available594Open in IMG/M
3300028049|Ga0268322_1051570Not Available520Open in IMG/M
3300028050|Ga0268328_1012388Not Available906Open in IMG/M
3300028050|Ga0268328_1022744Not Available751Open in IMG/M
3300028051|Ga0268344_1003241Not Available936Open in IMG/M
3300028054|Ga0268306_1011278Not Available721Open in IMG/M
3300028055|Ga0268338_1006730Not Available882Open in IMG/M
3300028058|Ga0268332_1009299All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum1011Open in IMG/M
3300028058|Ga0268332_1050587Not Available596Open in IMG/M
3300028063|Ga0268350_1041034Not Available673Open in IMG/M
3300028141|Ga0268326_1006990Not Available621Open in IMG/M
3300028143|Ga0268348_1005626Not Available805Open in IMG/M
3300028143|Ga0268348_1006464Not Available772Open in IMG/M
3300028144|Ga0268345_1006720Not Available774Open in IMG/M
3300028152|Ga0268336_1010776Not Available693Open in IMG/M
3300028153|Ga0268320_1030437Not Available502Open in IMG/M
3300028154|Ga0268341_1014239Not Available646Open in IMG/M
3300028251|Ga0268324_1011394Not Available649Open in IMG/M
3300028381|Ga0268264_11448618Not Available697Open in IMG/M
3300028466|Ga0268321_100565Not Available1190Open in IMG/M
3300028469|Ga0268337_1000502All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta1467Open in IMG/M
3300028472|Ga0268315_1001646Not Available1133Open in IMG/M
3300028476|Ga0268329_1004239Not Available870Open in IMG/M
3300028526|Ga0268339_1012996Not Available580Open in IMG/M
3300028527|Ga0268335_1001395Not Available1071Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere58.72%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere21.10%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated9.17%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere6.42%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.75%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.92%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.92%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300009975Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_187 metaGHost-AssociatedOpen in IMG/M
3300009980Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaGHost-AssociatedOpen in IMG/M
3300009989Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaGHost-AssociatedOpen in IMG/M
3300009990Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_206 metaGHost-AssociatedOpen in IMG/M
3300009994Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_171 metaGHost-AssociatedOpen in IMG/M
3300009995Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaGHost-AssociatedOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300015273Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015278Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015284Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015290Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015293Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015297Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015301Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015310Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015312Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015313Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015316Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015319Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015320Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015324Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015325Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015326Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015327Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015328Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015330Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015331Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015332Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015334Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015335Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015336Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015337Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015338Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015349Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015350Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015352Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015353Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015354Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017412Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017414Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017421Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017422Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017432Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017439Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017440Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017445Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017447Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017692Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017693Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017694Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300020023Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_22AUG2016_LD2 MGHost-AssociatedOpen in IMG/M
3300020033Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12JUL2016_LD2 MGHost-AssociatedOpen in IMG/M
3300020223Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_31MAY2016_LD2 MGHost-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028049Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028050Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028051Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028054Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028055Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028058Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028063Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028141Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028143Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028144Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028152Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028153Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028154Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028251Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028466Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028469Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028472Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028476Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028526Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028527Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0068864_10233118023300005618Switchgrass RhizosphereMNNSTVCHEADFQHPDEYKQLIDSPNYIYAIDDNKVQELLARKPIENRVPLGFESTMNRTISQ*
Ga0068860_10277709023300005843Switchgrass RhizosphereMNNSTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVPLGF*
Ga0105129_10149313300009975Switchgrass AssociatedMNNSTVRHEADFQHPDEYKQLIGSPNYIYAINDNKAQELSARKPI*
Ga0105129_10480013300009975Switchgrass AssociatedMNNSTVRYEADFQHPDVYKQLIDSPNYIYAINDNKAQELSARKPIENRVSLGS*
Ga0105135_10884213300009980Switchgrass AssociatedMNNSTVRHEADFQHPHEYKQLIDSPNYIYAINDNKAQELSARKPIENRVPLGF*
Ga0105131_12293213300009989Switchgrass AssociatedMNNSTVCHEADLEHPDEYKQLIDSPKYIYAINDNKAQELSARKPIENRVPLGF*
Ga0105131_13061613300009989Switchgrass AssociatedMNSSTVRHEADFQYPDEYKQLIDSPNYIYAIYDNKAQELTARKPIENRVSLGF*FTMNRTCYRRKLTGLIYG
Ga0105132_13862113300009990Switchgrass AssociatedMNNNTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAHELSSRKPIEDRVSLGF*
Ga0105132_14560023300009990Switchgrass AssociatedMNKITVRHEADFQHPDEYKQLIGSPNYIYAINDNKAQELSARKPIENRVSLGF*
Ga0105126_104558813300009994Switchgrass AssociatedMNNSTVRHEADFQHPDEYKQLIDSLNYIYAINDNKAQELSARKPIGNRAMLIS*
Ga0105139_102266813300009995Switchgrass AssociatedMNNSTVRHEADFQHPDEYKQLIESLNYIYAIDDNKVQELSSRKPIENRVPLGFEPTMNRTIIQ*
Ga0105139_102795523300009995Switchgrass AssociatedMNNNTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVSLGF*
Ga0134126_1182529113300010396Terrestrial SoilMNISTVRHEADLQHPDEYKQLIDSPNYIYAINDNKAQELTARKPIENRVSLGF*
Ga0134121_1260973013300010401Terrestrial SoilMNNSTVRHEADFQHPDEYKQLIDSPKYIYAINDNKAQELSARKPIENRVSLGF*
Ga0134123_1262191423300010403Terrestrial SoilMNNSTVRHEADFQHPDEYKQLIDSLKYIYAINDNKAQELSTKKPIENRVPLDF*
Ga0163163_1135034713300014325Switchgrass RhizosphereMNSSTVRHEADSQHLDEYKQLIDSPKYIYAINDNKAQELSAKKPIENRVPLGF*
Ga0182102_101747513300015273Switchgrass PhyllosphereMNNSTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVALGS*
Ga0182099_101799813300015278Switchgrass PhyllosphereMNSSTVRHEADFQHLDEYKQLIDSPKYIYAINDNKAQELSARKPIENRMPLGF*
Ga0182099_106726923300015278Switchgrass PhyllosphereMNNSTVRHEADFQHPDEYKQLIDSPNYIYAIDDNKVQELSARKPIENIMPLGFESTMNRTISQ*
Ga0182101_101309013300015284Switchgrass PhyllosphereMNNSTVRHEADFQHPDEYKERIDSLNYIYAINDNKAQELSARKPIENRVALGS*
Ga0182105_109227813300015290Switchgrass PhyllosphereMNSSTVRHEADFQHLDEYKQLIDSPKYIYAINDNKAQELSTKKPIENRVPLGF*
Ga0182103_107997223300015293Switchgrass PhyllosphereMNSSTVRHEADFQHLDEYKQLIDSPKYIYAINDNKAQELSAKKPIENRVPLDF*
Ga0182104_106130413300015297Switchgrass PhyllosphereMNNSTVCHEADLQHPDEYKQLIDSPKYIYAINNNKAQELSARKPIENRVSLGS*
Ga0182104_111405813300015297Switchgrass PhyllosphereMKNSIVLHEADFQHPDEYKQLIDSPNYIYAINDNKALELSSRKPIEDSVSLGF*
Ga0182184_103507523300015301Switchgrass PhyllosphereMNNSTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVSLGS*
Ga0182184_104046413300015301Switchgrass PhyllosphereMHSSTVRHEADFQHLDEYKQLIDSPKYIYAINDNKAQELSAKKPIENRVPLDF*
Ga0182162_106407613300015310Switchgrass PhyllosphereMKNSIVLHEADFQHPDEYKQLIDSPNYMYAINDNKAQELSARKPIENRVPLGF*
Ga0182162_110273823300015310Switchgrass PhyllosphereMNNSTVHHEADFQHPDEYKQLIGSPNYIYAINDNKAQELSARKPI*
Ga0182162_111738413300015310Switchgrass PhyllosphereMNSSTVRHEADFQHLGEYKQLIDSPKYIYAINDNKAQELSARKPIENRVSLGS*
Ga0182168_112473113300015312Switchgrass PhyllosphereMNNITARHEADFQHPDEYKQLIDSSNYIYAIDDNKVQELSARKPIENIMPLGFESTMNRTISQ*
Ga0182164_110781023300015313Switchgrass PhyllosphereMNSSTVRHEADFQHLDEYKQLIDSPKYIYAINNNKAQELSARKPIENSVIGL*
Ga0182121_102799713300015316Switchgrass PhyllosphereMNKSIVRHEADFQHPDEYKQLIGPPNYIYAINDAKTQELSARKPIENRVPLGF*
Ga0182130_110148913300015319Switchgrass PhyllosphereMNNSTVCHEADLQHPDEYKQLIDSPKYIYAINNNKAQELSARKPIENRVSLGF*
Ga0182165_101082013300015320Switchgrass PhyllosphereMNNNTVRHEADFQHPDEYKQLVDSPKYIYAINDNKAQELSARKPIENRVSLCS*
Ga0182165_107583523300015320Switchgrass PhyllosphereMNSSTICRHEADFQHIDEYKQLIGSPKYIYAINDNKAQELSAKKPIENRVSLGF*
Ga0182134_101539213300015324Switchgrass PhyllosphereMNSSTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENGRPLGF*
Ga0182148_110869313300015325Switchgrass PhyllosphereMNSSTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSTRKPIENKVLLGF*
Ga0182166_103907213300015326Switchgrass PhyllosphereMNNSTVHHEADFQHPDEYKQLIGSLNYIYAINDNKAQELSARKPI*
Ga0182166_106859223300015326Switchgrass PhyllosphereMNNSTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELLAKKPIENRVPLGF*
Ga0182114_109265623300015327Switchgrass PhyllosphereMNNSTVRLEADFQHPDEYKQLVDSPKYIYAINDNKAQELSARKPIENRMPLGFESTMNRTISQ*
Ga0182153_101045513300015328Switchgrass PhyllosphereMNNITARHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENGMSLGF*
Ga0182152_107341613300015330Switchgrass PhyllosphereMNNNTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVSLGS*
Ga0182131_101399223300015331Switchgrass PhyllosphereMNNNTVRHEADFQHPDEYKQLINSPNYIYAINDDKTQELSARKPIENRLTLDF*
Ga0182117_116152913300015332Switchgrass PhyllosphereMNSSTICRHEADFQHLDEYKQLIGSPKYIYAINDNKAQELSAKKPIENRVPLCF*
Ga0182132_109185313300015334Switchgrass PhyllosphereMNNSTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAHELSSRKPIEDRVSLGF*
Ga0182116_106108813300015335Switchgrass PhyllosphereMNNSIVRHEADFQHLDEYKQLIGSPNYIYAINDNKAQELSARKPIENRVPLGF*
Ga0182116_107808013300015335Switchgrass PhyllosphereMNNSTVRHEADFQHPDEYKQLIDSPNYIYAIDDNKVQELSSRKPIENRVPMGF*
Ga0182150_111300213300015336Switchgrass PhyllosphereMNSSTVRHEADFQHLDEYKQLIDSPKYIYTINDNKAKELSAKKPIENRVSLGF*
Ga0182151_114402513300015337Switchgrass PhyllosphereMNSSTVRHEADFQHLDEYKQLIDSPKYIYAINDNKAQELSARKPI*
Ga0182137_104867523300015338Switchgrass PhyllosphereMNNSIVCHEADFQHPDEYKQLIDSPNYIYAIDDNKVQELSARKPIETRVPLGFESTMNRIISQ*
Ga0182137_111695313300015338Switchgrass PhyllosphereMNNSTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENSVIGL*
Ga0182185_114449513300015349Switchgrass PhyllosphereMNNNTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVPLGF*
Ga0182163_106718223300015350Switchgrass PhyllosphereMNNSTVRHKTDFQHPNEYKQLINSSNYIYAINDNKAQELSARKPIENRVSLGS*
Ga0182163_116855713300015350Switchgrass PhyllosphereMNNSTVRHEADFQHPDEYKQLIDSPNYIYSINDNKAQELSARKPIENRVSLGS*
Ga0182163_120974513300015350Switchgrass PhyllosphereMNNITARHEADFQHPDEYKQLIDSPNYIYAIDDNKVQELSARKPIENRMPLGFESTMNRTISQ*
Ga0182169_113626513300015352Switchgrass PhyllosphereMNNSIVRHEADFQHLDEYKQLIGSPNYIYAINDNKAQELSARKPIENR
Ga0182179_124880313300015353Switchgrass PhyllosphereMNNSTVRHEADFQHLDEYKQLIDSPKYIYAINDNKAQELSAKKPIENRVPLGF*
Ga0182167_101389613300015354Switchgrass PhyllosphereMNSSIVRHEADFQHLDEYKQLIDSPKYIYAINDNKAQELSAKKP
Ga0182167_130139913300015354Switchgrass PhyllosphereMNNSTVRQEADLQHPDEYKQLIDYPKYIYAINDNKARELSARKPTENRVSLGS*
Ga0182199_120581513300017412Switchgrass PhyllosphereMNNSTVCHEADLQHPDEYKQLIDSPKYIYAINNNKAQELSARKPIENRVPLGF
Ga0182195_115097413300017414Switchgrass PhyllosphereMNSSTVRHEADFQHLDEYKQLIDSPKYIYAINDNKAQELSARKPIENRVALGS
Ga0182213_119292613300017421Switchgrass PhyllosphereMNNSTVRHEADFQHPNEYKQLIDSPNYIYAINDNKAQELSARKSIENRVPLGF
Ga0182201_100588513300017422Switchgrass PhyllosphereMNNSTVCHEADLQHPDEYKQLIDSPKYIYAINNNKAQELSAKKPTENRVPLGF
Ga0182201_110160913300017422Switchgrass PhyllosphereMNSSIVRHEADFQHLDEYKQLIDSPKYIYAINDNKAQELSAKKPIENRVPLGF
Ga0182196_102338713300017432Switchgrass PhyllosphereMNNNTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVPLGF
Ga0182196_115282513300017432Switchgrass PhyllosphereMNSSTVRHEADFQHLDEYKQLIDSPKYIYAINDNKAQELSAKKPIKNRVPLGF
Ga0182200_104880213300017439Switchgrass PhyllosphereMNSSTVHHEADFQHLDEYKQLIVSPKYIYAINDNKAQELSAKKPIENRVPLGF
Ga0182214_113502813300017440Switchgrass PhyllosphereMNNITARHEADFQHPDEYKQLNDSPNYIYAIDDKKVQELSARKPIENRMPLGFESTMNRTISQ
Ga0182214_114145313300017440Switchgrass PhyllosphereMNSSTVRHEADFQHPNEYKQLIDSPNYIYAINDNKAQELSARKPIENRVPLGF
Ga0182198_107355013300017445Switchgrass PhyllosphereHEADFQHLDEYKQLIGSPNYIYAINDNKAQELLARKPIENKVSLGF
Ga0182198_118189313300017445Switchgrass PhyllosphereMNNITARHEADFQHPDEYKQLIDSLKYIYAINDNKAQELSARKPIENRVALGS
Ga0182215_112951913300017447Switchgrass PhyllosphereMNNSTVRREADFQHPDEYKQLIDSPNYIYAINDNKAHELSSRKPIEDRVSLGF
Ga0182210_105397013300017692Switchgrass PhyllosphereMNNNTVRHEADFQHPDEYKQLIDSPNYIYAIDDKKVQELSARKPIENRVPLGFEATMNRTISQ
Ga0182216_106731913300017693Switchgrass PhyllosphereMNSSTVHHEADFQHLDEYKQLIISPKYIYAINDNKAQELSAKKPIENR
Ga0182211_108428123300017694Switchgrass PhyllosphereMNSSTVRHEADFQHLDEYKQLIDSPKYIYAINDNKAQELSAKKPIENRVPLGF
Ga0182211_110733813300017694Switchgrass PhyllosphereMNNNTVCHEADFQHSDEYKQLIDSLNYIYAIDDNKVQELSARKPIENRMPLGFESTMNRTISQ
Ga0182178_100635323300020023Switchgrass PhyllosphereMNNSTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVSLGS
Ga0182146_10191213300020033Switchgrass PhyllosphereVRHEADFQHLDEYKQLIDSPKYIYAINDNKAQELSAKKPIENRVPLGF
Ga0182146_10485713300020033Switchgrass PhyllosphereMNNSTVRHEADFQHPDEYKQLIDSPNFIYAIDDNKVQELPAKKPIENRVSLGFESTMNRTISQ
Ga0182118_10082913300020223Switchgrass PhyllosphereMNNSTVRLEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVSLGS
Ga0207658_1124040223300025986Switchgrass RhizosphereMNNSTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVPLGS
Ga0207703_1191511713300026035Switchgrass RhizosphereMNSSTVRHEADLQHPDEYKQLIGSPNYIYAINDNKAQELSARKPIENRVLLGF
Ga0207641_1042327623300026088Switchgrass RhizosphereMNNSTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVSLCS
Ga0207676_1156588523300026095Switchgrass RhizosphereMNNSTVCHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVPLGF
Ga0207675_10202034113300026118Switchgrass RhizosphereMNSSTVRHEADFQHLDEYKQLIDSPKYIYAINDNKAQELSAKKPIENRVPLDF
Ga0268322_105157023300028049PhyllosphereMNNSTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENGRPLGF
Ga0268328_101238813300028050PhyllosphereMNSSTVRHEADFQHLDEYKQLIDSPKYIYAINDNKAQELSARKPIENRVSLGS
Ga0268328_102274413300028050PhyllosphereMNNITARHEADFQHPDEYKQLIDSPNYIYAIDDNKVQELSARKPIENRMPLGFESTMNRTISQ
Ga0268344_100324113300028051PhyllosphereMNSSTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELTARKPIENRVSLGF
Ga0268306_101127813300028054PhyllosphereMNNNTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPI
Ga0268338_100673013300028055PhyllosphereVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVSLGS
Ga0268332_100929913300028058PhyllosphereMNNNTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVSLGS
Ga0268332_105058713300028058PhyllosphereEADFQHLDEYKQLIGSPNYIYAINDNKAQELSVRKSIENRVSLGF
Ga0268350_104103413300028063PhyllosphereMNNSTVCHEADLQHPDEYKQLIDSPNYIYAINDDKAQELSARKPIENRVPLGF
Ga0268326_100699013300028141PhyllosphereMNNNTVCHEANLQHPDEYKQLIDSLKYIYAINDNKAQELSARKPIENRVALGS
Ga0268348_100562613300028143PhyllosphereVCHEANLQHPDEYKQLIDSPKYIYAINDNKAQELSARKPIENRVSLGS
Ga0268348_100646413300028143PhyllosphereMNNSTVCHEADLQHPDEYKQLIDSPKYIYAINDNKAQELSARKPIENRVSLG
Ga0268345_100672013300028144PhyllosphereMNSSTVRHEADFQHPDEYKQLIDSLNYIYAINDNKAQELSARKPIENRVPLGF
Ga0268336_101077613300028152PhyllosphereMNNSTVRHEADFQHPDEYKQLIDSPNYIYAIDDNKVQELSSRKPIENRVPLGFEPTMNRTIIQ
Ga0268320_103043723300028153PhyllosphereMNNSTIRHKTDFQHPNEYKQLIDSSNYIYAINDNKAQELSAKKPIENRVPLGF
Ga0268341_101423923300028154PhyllosphereMNNSTVRHEADFQHPDEYKQLIDSPNYIYAIDDNKVQELSARKPIENRELLDF
Ga0268324_101139413300028251PhyllosphereMNNSTVRHEADFQHPDVYKQLIDSPNYIYAINDNKAQELSARKPIENGRPLGF
Ga0268264_1144861823300028381Switchgrass RhizosphereMNNSIVCHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVPLGF
Ga0268321_10056513300028466PhyllosphereMNNSIVCHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENGRPLGF
Ga0268337_100050213300028469PhyllosphereMNNSTVRHEADFQHLDEYKQLIDSPKYIYAINDNKAQELSAKKPIENRVPLGF
Ga0268315_100164613300028472PhyllosphereMNNSTVRHEADFQHPDEYKQLIDSPNYIYAINDNKAQELSARKPIENRVLLGF
Ga0268329_100423913300028476PhyllosphereNEADLQHPDEYKQLIDSLKYIYAINDNKAQELSARKPIENRVALGS
Ga0268339_101299613300028526PhyllosphereMNNSTVRHEADFQHPDDYKQLIDSPNYIYAINDNKAQELSAKKPIENRVPLGF
Ga0268335_100139513300028527PhyllosphereMNSSTVRHEADFQHSDEYKQLIDSPNYIYAINDNKAQELSARKTIENRVLLGF

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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