Metagenome / Metatranscriptome Family F088379

Basic Information
Family ID	F088379
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	91 residues
Representative Sequence	MMTFIPPRLRKPAIYALAGLLFAAAWLVQGGHLWFVSIMAVIGTAAGAVRQYRLGGTDTDEGARAGSRADERQQLVSLRSRALACNL
Number of Associated Samples	93
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	97.20 %
% of genes near scaffold ends (potentially truncated)	94.50 %
% of genes from short scaffolds (< 2000 bps)	96.33 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Most Common Taxonomy
Group	Unclassified (71.560 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (44.037 % of family members)
Environment Ontology (ENVO)	Unclassified (32.110 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.541 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.22% β-sheet: 0.00% Coil/Unstructured: 34.78%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF01381	HTH_3	90.83
PF00455	DeoRC	0.92
PF01261	AP_endonuc_2	0.92
PF04672	Methyltransf_19	0.92
PF00903	Glyoxalase	0.92
PF00300	His_Phos_1	0.92
PF00753	Lactamase_B	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	Transcription [K]	1.83
COG0120	Ribose 5-phosphate isomerase	Carbohydrate transport and metabolism [G]	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
All Organisms	root	All Organisms	28.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
cellular organisms	root	All Organisms → cellular organisms	28.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	22.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.67 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.92 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.92 %
Halomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.92 %
Halomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	0.92 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.92 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.92 %
Halomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.92 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.92 %
Halomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100749966	Not Available	855	Open in IMG/M
3300005332\|Ga0066388_102689160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	908	Open in IMG/M
3300005435\|Ga0070714_100172298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1964	Open in IMG/M
3300005435\|Ga0070714_100195108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1850	Open in IMG/M
3300005435\|Ga0070714_100756536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	939	Open in IMG/M
3300005436\|Ga0070713_100328672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1414	Open in IMG/M
3300005458\|Ga0070681_11777961	Not Available	543	Open in IMG/M
3300005467\|Ga0070706_100436424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1219	Open in IMG/M
3300005534\|Ga0070735_10933619	Not Available	509	Open in IMG/M
3300005602\|Ga0070762_10960323	Not Available	585	Open in IMG/M
3300005610\|Ga0070763_10475754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	712	Open in IMG/M
3300005618\|Ga0068864_102006128	Not Available	585	Open in IMG/M
3300005764\|Ga0066903_103614442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	833	Open in IMG/M
3300006028\|Ga0070717_11892784	Not Available	538	Open in IMG/M
3300006903\|Ga0075426_11261138	Not Available	561	Open in IMG/M
3300009792\|Ga0126374_11743526	Not Available	519	Open in IMG/M
3300010043\|Ga0126380_11383393	Not Available	617	Open in IMG/M
3300010046\|Ga0126384_12180352	Not Available	533	Open in IMG/M
3300010048\|Ga0126373_10800134	Not Available	1004	Open in IMG/M
3300010049\|Ga0123356_13532917	Not Available	542	Open in IMG/M
3300010343\|Ga0074044_10612792	Not Available	710	Open in IMG/M
3300010396\|Ga0134126_10641376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1212	Open in IMG/M
3300010398\|Ga0126383_11904767	Not Available	682	Open in IMG/M
3300010867\|Ga0126347_1433520	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300011120\|Ga0150983_13068622	Not Available	1026	Open in IMG/M
3300016294\|Ga0182041_10737678	Not Available	876	Open in IMG/M
3300016371\|Ga0182034_12019018	Not Available	510	Open in IMG/M
3300016404\|Ga0182037_10727186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	851	Open in IMG/M
3300016404\|Ga0182037_11118984	Not Available	690	Open in IMG/M
3300017928\|Ga0187806_1298402	Not Available	567	Open in IMG/M
3300017932\|Ga0187814_10285948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	629	Open in IMG/M
3300017937\|Ga0187809_10268342	Not Available	621	Open in IMG/M
3300017937\|Ga0187809_10401193	Not Available	522	Open in IMG/M
3300017942\|Ga0187808_10447835	Not Available	594	Open in IMG/M
3300017959\|Ga0187779_10757662	Not Available	660	Open in IMG/M
3300017961\|Ga0187778_10326326	Not Available	996	Open in IMG/M
3300017972\|Ga0187781_10661712	Not Available	754	Open in IMG/M
3300017972\|Ga0187781_10915488	Not Available	639	Open in IMG/M
3300017973\|Ga0187780_10272067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1189	Open in IMG/M
3300017974\|Ga0187777_11138853	Not Available	569	Open in IMG/M
3300017975\|Ga0187782_10537429	Not Available	896	Open in IMG/M
3300017999\|Ga0187767_10160068	Not Available	682	Open in IMG/M
3300018058\|Ga0187766_11466531	Not Available	503	Open in IMG/M
3300020581\|Ga0210399_10012355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6690	Open in IMG/M
3300021168\|Ga0210406_10926475	Not Available	654	Open in IMG/M
3300021170\|Ga0210400_11347228	Not Available	570	Open in IMG/M
3300021178\|Ga0210408_11201415	Not Available	579	Open in IMG/M
3300021180\|Ga0210396_10258375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1548	Open in IMG/M
3300021180\|Ga0210396_11189304	Not Available	638	Open in IMG/M
3300021401\|Ga0210393_11488556	Not Available	539	Open in IMG/M
3300021403\|Ga0210397_11422454	Not Available	538	Open in IMG/M
3300021403\|Ga0210397_11544250	Not Available	515	Open in IMG/M
3300021404\|Ga0210389_10353434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1154	Open in IMG/M
3300021404\|Ga0210389_11188222	Not Available	587	Open in IMG/M
3300021404\|Ga0210389_11289333	Not Available	560	Open in IMG/M
3300021404\|Ga0210389_11293514	Not Available	559	Open in IMG/M
3300021407\|Ga0210383_10808136	Not Available	802	Open in IMG/M
3300021432\|Ga0210384_11474539	Not Available	586	Open in IMG/M
3300021433\|Ga0210391_10815246	Not Available	729	Open in IMG/M
3300021474\|Ga0210390_10619028	Not Available	906	Open in IMG/M
3300021475\|Ga0210392_10246587	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300021560\|Ga0126371_13442988	Not Available	534	Open in IMG/M
3300022467\|Ga0224712_10585646	Not Available	544	Open in IMG/M
3300022714\|Ga0242671_1096822	Not Available	557	Open in IMG/M
3300024227\|Ga0228598_1098814	Not Available	589	Open in IMG/M
3300025916\|Ga0207663_10850219	Not Available	728	Open in IMG/M
3300025917\|Ga0207660_10975861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	691	Open in IMG/M
3300025924\|Ga0207694_11054788	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300025928\|Ga0207700_11160931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Halomonadaceae → Halomonas	690	Open in IMG/M
3300027080\|Ga0208237_1012988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1238	Open in IMG/M
3300027676\|Ga0209333_1174950	Not Available	572	Open in IMG/M
3300027684\|Ga0209626_1115959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	699	Open in IMG/M
3300031544\|Ga0318534_10650152	Not Available	597	Open in IMG/M
3300031546\|Ga0318538_10331699	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300031546\|Ga0318538_10431635	Not Available	713	Open in IMG/M
3300031572\|Ga0318515_10559806	Not Available	609	Open in IMG/M
3300031573\|Ga0310915_10217510	Not Available	1339	Open in IMG/M
3300031573\|Ga0310915_10948121	Not Available	602	Open in IMG/M
3300031668\|Ga0318542_10588315	Not Available	580	Open in IMG/M
3300031715\|Ga0307476_10372601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1052	Open in IMG/M
3300031782\|Ga0318552_10497895	Not Available	622	Open in IMG/M
3300031782\|Ga0318552_10594012	Not Available	565	Open in IMG/M
3300031793\|Ga0318548_10312200	Not Available	772	Open in IMG/M
3300031793\|Ga0318548_10420395	Not Available	655	Open in IMG/M
3300031793\|Ga0318548_10523203	Not Available	579	Open in IMG/M
3300031797\|Ga0318550_10294811	Not Available	787	Open in IMG/M
3300031798\|Ga0318523_10573671	Not Available	556	Open in IMG/M
3300031805\|Ga0318497_10696493	Not Available	570	Open in IMG/M
3300031821\|Ga0318567_10622688	Not Available	613	Open in IMG/M
3300031860\|Ga0318495_10177877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	959	Open in IMG/M
3300031912\|Ga0306921_10856153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1035	Open in IMG/M
3300031941\|Ga0310912_11118930	Not Available	601	Open in IMG/M
3300031942\|Ga0310916_11663154	Not Available	517	Open in IMG/M
3300031954\|Ga0306926_12980353	Not Available	506	Open in IMG/M
3300031959\|Ga0318530_10445478	Not Available	537	Open in IMG/M
3300032009\|Ga0318563_10718130	Not Available	536	Open in IMG/M
3300032025\|Ga0318507_10223586	Not Available	815	Open in IMG/M
3300032035\|Ga0310911_10420428	Not Available	774	Open in IMG/M
3300032039\|Ga0318559_10221486	Not Available	872	Open in IMG/M
3300032043\|Ga0318556_10405794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	713	Open in IMG/M
3300032066\|Ga0318514_10043956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2141	Open in IMG/M
3300032066\|Ga0318514_10777382	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300032090\|Ga0318518_10649438	Not Available	537	Open in IMG/M
3300032828\|Ga0335080_12301110	Not Available	516	Open in IMG/M
3300032895\|Ga0335074_10287628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1892	Open in IMG/M
3300032898\|Ga0335072_10960780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	790	Open in IMG/M
3300032954\|Ga0335083_11217913	Not Available	583	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.41%
Host-Associated	Host-Associated	4.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.83%
Aquatic	Environmental → Aquatic	4.59%
Plants	Host-Associated → Plants	3.67%
Arthropoda	Host-Associated → Arthropoda	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.91%
Freshwater	Environmental → Aquatic → Freshwater	4.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%
Peat	Environmental → Terrestrial → Peat	0.92%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.63%
Loam	Environmental → Terrestrial → Soil → Loam	17.43%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.84%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.92%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	50.46%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.84%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.26%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	44.04%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	8.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.59%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.92%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.92%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027080	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1007499661	3300002245	Forest Soil	MMTFVPPRLRKPAGAALAGLLFAAAWLVRGGPLWWVSINAVILTAVCVARLYWLGGKDTDEGARAGSRADERQRLVSARSRAIACNLAALTSFIGLTAG
Ga0066388_1026891601	3300005332	Tropical Forest Soil	MTFIPPRLRKPAIYALAGALFAAAWLVRGGPLWWVSIMAVIGTAVGAVRLYLLGGTDTDDGARAGSRADERQQLTSLRSRALACNLAAV
Ga0070714_1001722984	3300005435	Agricultural Soil	MMMTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVSILALIGTVAGAVRLYRLGGTDTDEGDRIGSRADERQQLVSLRSRALACNLAAITSFIGLTAAIAVKGTWGGRSWSPFSSPATDTCSG*
Ga0070714_1001951084	3300005435	Agricultural Soil	MMTFLPPRLRKPTMFTLAGLLFAGAWLVHGGPLWWVSIPAVIGTAASAARLYRLGGTDTDEGARVGSRADERQQLVSMRSRALACNLAAITSFIGLTAAIALRAPWWWPFLITLL
Ga0070714_1007565361	3300005435	Agricultural Soil	MMTFISPRLRKPAMYALAGLLFAGAWLVHGGRLWWVSIPAVILTAYHVVRLYRLGRTDTDEGARAGSRADERQQLVSLRS
Ga0070713_1003286721	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MMTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVSILALIGTVAGTVRMYRVAGTDTDEGDRVGSRADERQQLVSLRSRALACNLTAITSFIGLT
Ga0070681_117779612	3300005458	Corn Rhizosphere	MMTFISPRLRKPAMYTLAGLLFAGAWLVHGGRLWWVSIPAVILTAYHVVRLYRLGGTDTDEGARAGSRADARQQLVSLRSRALACNLAAITSFIGLTVSIAVWASWGWPFLVTL
Ga0070706_1004364243	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MMAFIPPRLRKPAVIAVAGVVFGAAWLVRGGPLWWISIPALILAPARASYLYWGGEQDTDAGALAGSRADERQQLLEQLLPLVRPR
Ga0070735_109336192	3300005534	Surface Soil	MMTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVSIPALIGTVAGTVRLYRVGGTDTDEGDRIGSRADERQQLVSLRSRALACNLTAITSFIGLTAAVAVKGTWGWPFLLTLLVT
Ga0070762_109603231	3300005602	Soil	MMRFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVSIPALIGTVAGAVRLYRLGGTDTDEGDRVGSRADERQQLVSLRSRALACNLAAITSFIGLTAAIAVKGTWGWPFLVTL
Ga0070763_104757541	3300005610	Soil	MMTFIPPRLRKPGIYALAGMLFSAAWLVQGGRLWWVAIPALIGTVAGTVRLYLVGGTDTDEGDRIGSRADERQQLVSLRSRALACNLTAITSFIGLTAAIAVKGTWGWPFLVTLLI
Ga0068864_1020061282	3300005618	Switchgrass Rhizosphere	MYALAGLLFAGAWLVHGGRLWWVSIPAVILTAYHVVRLYRLGRTDTDEGARAGSRADERQQLVSLRSRALACNLTALTSFIGLTVSIAVWASWGWPFLVTLLITGYG
Ga0066903_1036144423	3300005764	Tropical Forest Soil	MMTFIPPRLRKPAMYAAAGLLFAAAWLVRGGHLWWVSINAVILTAAAVGRLYWQGGTDTDQGARAGSRADERQQLISLRSRAWPATWPRSRRSLA*
Ga0070717_118927842	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTTFISPRMRKPAVFSLAGALFAAAWLIRGGPLWWVSIMTVIVTAVRVIAFYRMGGQDTDEGALAGSRADERQKQLSLRSRALACNAAAVATFIGLTVTIATKS
Ga0075426_112611382	3300006903	Populus Rhizosphere	MMTFISPRLRKPAMYALAGLLFAGAWLVHGGRLWWVSIPAVILTAYHVVRLYRLGRTDTDEGARAGSRADERQQLVSL
Ga0126374_117435262	3300009792	Tropical Forest Soil	MMTFIPPRLRKPAIYALAGMLFAAAWLVHGGHLWFVAIIAVIGTAAGAVRLYRLGGTDTDEGARAGSRPDERQQLISLRSRALACNVAAVTSFIGLTVAIAVWAAWGWPFLVTLLITGYG
Ga0126380_113833931	3300010043	Tropical Forest Soil	MMTFISPRLRKPAIYALAGVLFAAAWLVRGGNLWWVSIMALIGTAVGVVRMYQLGGQDTDEGARAGSRGDERQQMISLRSRALACNLTAITSFIGLTVAIALNAVWWWPFL
Ga0126384_121803522	3300010046	Tropical Forest Soil	MTTFIRPRLRKPAGIALAGVLFAAAWLVRGGPLWWVSILAVIAAAARATSLYRMGAKDTDEGALASSRADERQNLLSLRS
Ga0126373_108001341	3300010048	Tropical Forest Soil	MAFIPLRLRKPAGIAVAGVLFAAAWLVRGGPLWWVSIPALIAALARGIYLYWGSGQDTDAGALAGSRAD
Ga0123356_135329171	3300010049	Termite Gut	MMTFIPPRLRKPAVYSLAGVLFAAAWLVRGGTLRYVAIIALIGTTAAVVRMYRLGGEDSDEGARAGSRSDE
Ga0074044_106127921	3300010343	Bog Forest Soil	MITFLAPRLRKPAGVALAGAVFAAAWLVRGGPLWWVSILAVIAAAARAVSWYRMGGQDTDEGALAGSRADERQKLLSLRSRAL
Ga0134126_106413764	3300010396	Terrestrial Soil	MMTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVSILALIGTVAGTVRLYRLGGTDTDEGDRIGSRPDERQQLVS
Ga0126383_119047673	3300010398	Tropical Forest Soil	RMMTFIPPRLRKPAMYAAAGLLFAVAWLVRGGHLWWVSINAVILTAAAVGRLYWQGGTDTDQGARAGSRADERQQLISLPSRAWPATWPRSRRSLA*
Ga0126347_14335201	3300010867	Boreal Forest Soil	MMTFIPPRLRKPAVYALAGVLFAAAWLVRGGPLWWVSINAVILTAAVVARVYWLGGKDTDEGARAGSRADERQQLVSVRSRGP
Ga0150983_130686222	3300011120	Forest Soil	MMTFIPPRLRKPVIYALAGLLFSAAWLVQGGRLWWVSILALIGTVAGTVRLYRLGGTDTDEGDRIGSRADERQQLVSLRSRALA*
Ga0182041_107376783	3300016294	Soil	MMTFIPPRLRKPAIYALAGGLFAAAWLVHGGHLWFVSIMAVIGTAAGAIRLYWLGGTDTDEGARAG
Ga0182034_120190181	3300016371	Soil	MMTFIPPRLRKPAIYALAGVLFAAAWLVRGGPMWWVSIMAVIGTAAAVVRLYRLGGTDTDEGARAGSRADERQQLVSLRSRALA
Ga0182037_107271861	3300016404	Soil	MMTFIPPRLRKPAVYAVAGLSFAAAWLVHGGHLWFVSIMAVIGTAAAVVRLYRLGGTDTDEGARAGSRADERQQLVSL
Ga0182037_111189842	3300016404	Soil	MMTFIPPRLRKPAIYALAGVLFAAAWLVRGGPLWWVSIMAVIGTAAGAVRLYLLGRTDTDEGARAGSRADERQQLISLRSRALACNLAAVTSFIGLTVAIAVKATWGW
Ga0187806_12984021	3300017928	Freshwater Sediment	MMTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVSIPALIGTVAGTVRLYRLGGTDTDEGDRIGSRADERQQLVSLRSRALACNLTAITS
Ga0187814_102859483	3300017932	Freshwater Sediment	MMSFISPRLRKPVGIAIAGAVFAAAWLVRGGPLWWVSILVVIATAARAVSWYWMGGQDTDEGALAGSRADER
Ga0187809_102683421	3300017937	Freshwater Sediment	MMTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVSIPALIGTVAGTVRLYQVGGTDTDEGDRIGSRADERQQLVSLRSRALACNLTAITSFIGLTAAVAV
Ga0187809_104011931	3300017937	Freshwater Sediment	MMSFISPRLRKPVGIAIAGAVFAAAWLVRGGPLWWVSILVVIATAARAVSWYWMGGQDTDEGALAGSRADERQQLVSLRSRALAC
Ga0187808_104478352	3300017942	Freshwater Sediment	MMTFIPPRLRKPAGIALAGAVFAAAWLVRGGPLWWVSIMAVIAAAARAVSWYRMGGTDTDEGALAASRADERQHLVSLQS
Ga0187779_107576621	3300017959	Tropical Peatland	MTFISPRLRKPAIYALAGVLFAAAWLVRGGPLWWVSIMAVIGTAAGSVRLYRLGGTDTDEGARAGSRADERQQLIGLRSRALACNLAAVTSFLGLTAAIAVKATWGWPF
Ga0187778_103263263	3300017961	Tropical Peatland	MMASIPPRLRKPAGIAVAGVLFGAAWLVRGGPLWWVAIPAFIAAPARAMYLYWGAGQDTDAGALAGSRADERQQLLSLR
Ga0187781_106617123	3300017972	Tropical Peatland	MMAFIPPRLRKPAVIAVAGVVFGAAWLVRGGPLWWISIPALILAPVRASYLYWGGGQDTDAGALAGSRADERQQLLSLQSRALACNLAVIAAFIGLTVAIAVKAAWWWPFLVIL
Ga0187781_109154881	3300017972	Tropical Peatland	MKGFIPPRLRKPAGILLAGVLFAAAWLVRGGPLWWVSILAVILAAARAVSWYRMGGEDTDEGALAGSRADERQQLVSLRSRALACNLTAVAAFIGLTVEIAVKAAW
Ga0187780_102720671	3300017973	Tropical Peatland	MMAFIPPRLRKPAVIAVAGVLFAAAWLVRGGLLWWVAIPALIAAPARAIYLYWGTGQDTDAGALAGSRADERQQLLSLRS
Ga0187777_111388532	3300017974	Tropical Peatland	MMAFIPPRLRKPAGIAVAGVLFGAAWLVRGGPLWWVSIPAFIAAVARAIYLYWGGGQDTDAGALAGSRADERQKLLSLRSRALACNLAVIAAFIGLMVAIAVKAAWWWPFLVILGIAGL
Ga0187782_105374291	3300017975	Tropical Peatland	MMSFIPPRLRKPAGIALAGVVFAAAWLVRGGPLWWVSILAVILTAVRAVFLYWAGGQDTDVGALAGSRADERQKLVSLRSWALACNLAAIAAF
Ga0187767_101600681	3300017999	Tropical Peatland	MTFISPRLRKPAIYALAGVLFAAAWLVRGGPLWWVSIMAVIGTAAGSVRLYRLGGTDTDEGARAGSRADERQQLIGLRSRAL
Ga0187766_114665311	3300018058	Tropical Peatland	MTFISPRLRKPAIYALAGVLFAAAWLVRGGPLWWVSIMAVIGTAAGSVRLYRLGGTDTDEGARAGSRADERQQLIGLRSRALACNLAAVTSF
Ga0210399_1001235511	3300020581	Soil	MMTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVSIPALIGTVAGTVRLYRLGGTDTDEGDRIGSRADERQQLVSLRSRALACNLTAITSFIG
Ga0210406_109264751	3300021168	Soil	VRTFIPSRLRKPAMYALAGLLFAAAWLVHGGHLWWVSILAVIVTAAGAVRLYRLGGTDTDEGARAGSRADERQQLVSLRSRALACNLAAVTSFIGLTAAIAAW
Ga0210400_113472282	3300021170	Soil	MMTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVAIPALIGTVAGTVRLYLVGGTDTDEGDRIGSRADERQQLVSLRSRALACNLTAIASFIGLTAAIAVKGTWGWPFLVT
Ga0210408_112014151	3300021178	Soil	MMTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVAIPALIGTVAGTVRLYLVGGTDTDEGDRIGSRADERQQLVSLRSRALACNLTAIASFIGLTAAIAVKGTWGWPFL
Ga0210396_102583753	3300021180	Soil	MMRFIPPRLRKPAGIALAGVLFAAAWLVRGGPLWWISILAVIMAAARAVYLYRMGGQDTDEGALAGSRADERQKLLSLRSRALACNLAVFAAFIGLTAAIAVKGGWWWPFLVILGVAGFG
Ga0210396_111893041	3300021180	Soil	MITFIPPRLRKPAGIALAGAVFAAAWLVRGGPLWWVSILAVIAAAVRAVSWYRMGGEDTDEGALAASRADERQKLLSLRSRALA
Ga0210393_114885563	3300021401	Soil	MRTFIPPRLRKPAMYALAGLLFAAAWLVHGGHLWWVSILAVIVTAPGVVRLYQLGGTDTDEGARAGSRADERQQLVSLRS
Ga0210397_114224541	3300021403	Soil	MMTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVAIPALIGTVAGTVRLYLVGGTDTDEGDRIGSRADERQQLVSLRSRALA
Ga0210397_115442501	3300021403	Soil	MMTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVSILALIGTIAGTVRLYRLSGTDTDEGARIGSRADERQELVSL
Ga0210389_103534341	3300021404	Soil	MMRFIPPRLRKPAAIALAGVLFAAAWLVRGGPLWWISILAVIMAAARAVYLYRMGGQDTDEGALAGSRAD
Ga0210389_111882221	3300021404	Soil	MMTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVSILALIGTIAGTVRLYRLSGTDTDEGARIGSRADERQELVSLRSRALACNLTAIASFIGLT
Ga0210389_112893331	3300021404	Soil	MITFIPPRLRKPAAYGLAGLLFAAAWLVRGGPLWWVSINALILTIAVVARLYWVGGKDTDEGARAGSRADERQQLVSLRSRALACNLT
Ga0210389_112935141	3300021404	Soil	MKTIIPPRLRKPTMYSVAGLAFSGAWLVHGGHLWWVAVPSLIGTAAGAARLYRLGGTDTDEGARAGSRSDERQQLVSMRSRALACNLA
Ga0210383_108081361	3300021407	Soil	MITFIPPRLRKPAGIVLAGAVFAAGWLVRGGPLWWVSVLALIAAAVRAVSWYRIGGQDTDEGALAASRADERQQLLSLRSRALACN
Ga0210384_114745391	3300021432	Soil	MITFIPPRLRKPAGIALAGAVFAAAWLVRGGPLWWVSILAVIAAAARAVSWYRMGGEDTDEGALAASRADERQKLLSLRSRALACNL
Ga0210391_108152462	3300021433	Soil	MMTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVAIPALIGTVAGTVRLYLVGGTDTDEGDRIGSRADERQQLVSLRSRALACNLTAITSFIGLTAA
Ga0210390_106190283	3300021474	Soil	MITFIPPRLRKPAGIALAGAVFAAAWLVRGGPLWWVSILAVIAAAARAVSWYRMGGEDTDEGALAASRADERQKLLSLRSRALACNLA
Ga0210392_102465871	3300021475	Soil	MITFIPPRLRKPAWTALAGLLFAGAWLIHGGPLWWVSIMAVIATAASVARIYRLGGQDTDDGARAGSRADERQQLVGARSRALGFNLAAVASFAGLTAAVALNAGWWW
Ga0126371_134429881	3300021560	Tropical Forest Soil	MMTFIRPRLRKPAWNALAGLLFAVAWLVRGGPLWWVSILAVIATAVRAISVYRMGAADTDEGALAGSRADERQRQLSLRSRSLACNLAAVASFVGLTAAIAVNAP
Ga0224712_105856461	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MMTFISPRLRKPAMYALAGLLFAGAWLVHGGRLWWVSIPAVILTAYHVVRLYRLGGTDTDEGARAGSRADERQQLVSLRSRALACNLTALTSFIGLTVSIAVWASWGWPFLVTLLIT
Ga0242671_10968221	3300022714	Soil	MMTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVAIPALIGTVAGTVRLYLVGGTDTDEGDRIGSRADERQQLVSLRSR
Ga0228598_10988142	3300024227	Rhizosphere	MMTFISPRLRKPVAIALAGALFAAAWLVRGGPLWWVSIMAVILVAVRAVSWYRMGGTDTDEGALAGSRADERQKLL
Ga0207663_108502192	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MMTFIPPRLRKPGIYALAGLVFSAAWLVQGGRLWWVSIPALIGTIAGTVRLYRLGGTDTDEGDRIGSRPDERQQLVSLRSRALACN
Ga0207660_109758611	3300025917	Corn Rhizosphere	MMTFISPRLRKPAMYALAGLLFAGAWLVHGGRLWWVSIPAVILTAYHVVRLYRLGRTDTDEGARAGSRA
Ga0207694_110547882	3300025924	Corn Rhizosphere	MYALAGLLFAGAWLVHGGRLWWVSIPAVILTAYHVVRLYRLGGTDTDEGARAGSRADERQQLVSLRSRALACNLTALTSFIGLTVSI
Ga0207700_111609312	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MMTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVSILALIGTVAGTVRMYRVAGTDTDEGDRVGSRADERQQLVSLRSRALACNLT
Ga0208237_10129881	3300027080	Forest Soil	MMRFIPPRLRKPAGIALAGVLFAAAWLVRGGPLWWVSISAVILAAAFVGRLYWLGGKDTDEGARAGSRADERQQ
Ga0209333_11749502	3300027676	Forest Soil	MMSFIPPRLRKPVIYALAGVLFAAAWLVRGGPLWWVSILALIGTVATVVRLYRVGGTDTDDGARAGSRADERQELISLRSRALACNLAAIASFLGLAAAIAAKADWWWPFLVTF
Ga0209626_11159593	3300027684	Forest Soil	MMTFVPPRLRKPAGAALAGLLFAAAWLVRGGPLWWVSINAVILTAVCVARLYWLGGKDTDEGARAGSRADERQRLVSARSRAIACNLAALTSFIGLTAGIAANA
Ga0302179_103064843	3300030058	Palsa	MMPFIPPRLRKPAGIALAGAVFAAAWLVRDGSLWWVAILAVIAAAARAVSWYRMGGRDTDEGALAA
Ga0318534_106501521	3300031544	Soil	MMTFIPPRLRKPAIYALAGVLFAAAWLVRGGPMWWVSIMAVIGTAAGAIHLYLLGGKDTDEGAQAGSRADERQQLISLRSRALACNLAAVTSVIGLTAAIAVKATWGWPFLVTLLITGYG
Ga0318538_103316991	3300031546	Soil	MMTFIPPRLRKPAVYAVAGLSFAAAWLVHGGHLWFVSIMAVIGTAAAVVRLYRLGGTDTDEGARAGSRADERQQLVSLRSRALACNLAAVTSFIGLT
Ga0318538_104316352	3300031546	Soil	MMTFIPPRLRKPAGAALAGVLFAAAWLVRGGPLWWVSIMAVIATAAGTVRLYWLGGTDTDEGARAGSRADERQQLI
Ga0318515_105598062	3300031572	Soil	MMTFIPPRLRKPAGAALAGVLFAAAWLVRGGPLWWVSITAVILAAARAIHLYRLGGQDTDEGALAGSRADE
Ga0310915_102175101	3300031573	Soil	MMTFIPPRLRKPAVYVLAGLLFAAAWLVQGGHLWFVSIMAVIGTAAGAVRLYRLGGTDTDEGARAGSRTDERQQ
Ga0310915_109481212	3300031573	Soil	MMTFIPPRLRKPAGAALAGVLFAAAWLVRGGPLWWVSITAVILAAARAIHLYRLGGQDTDEGALAGSRADERQKLLSQRSRALACNFAVI
Ga0318542_105883152	3300031668	Soil	MMTFIPPRLRKPAIYALAGILFAAAWLVRGGPLWWVSIIAVIGTAAGSVRLYRLGGTDTDEGARAGSRADERQQLIGLRSRALACNLAAVTS
Ga0307476_103726011	3300031715	Hardwood Forest Soil	MKTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVAIPALIGTVAGTVRLYLVGGTDTDEGDRIGSRADERQQLVSLRSRALACNLTAIA
Ga0318509_104171831	3300031768	Soil	MMTFIPPRLRKPAGAALAGVLFAAAWLVRGGPLWWVSITAVILAAARAIHLYRLGGQDTDEGALAG
Ga0318552_104978951	3300031782	Soil	MMTFIPPRLRKPAVYALAGGLFAAAWLVHGGRLWWVSIIALTGTAASAARLYRLGGTDTDEGARAGSRADERQQLV
Ga0318552_105940121	3300031782	Soil	MMTFIPPRLRKPAGAALAGVLFAAAWLVRGGPLWWVSITAVILAAARAIHLYRLGGQDTDEGALAGSRADERQKLLSQ
Ga0318548_103122003	3300031793	Soil	MMTFIPPRLRKPAVYVLAGLLFAAAWLVQGGHLWFVSIMAVIGTAAGAVRLYRLGGTDTDEGARAGSRTDERQQLVSLRSRA
Ga0318548_104203952	3300031793	Soil	MMTFIPPRLRKPAIYALAGILFAAAWLVRGGPLWWVSIIAVIGTAAGSVRLYRLGGTDTDEGARAGSRADERQQLIGLRSRALACNLAAVTSFIGLTVAIAVKAT
Ga0318548_105232032	3300031793	Soil	MMTFIPPRLRKPAVYALAGGLFAAAWLVHGGRLWWVSIIALTGTAASAARLYRLGGTDTDEGARAGSRADERQQLVSLRSRA
Ga0318550_102948112	3300031797	Soil	MMTFIPPRLRKPAGAALAGVLFAAAWLVRGGPLWWVSITAVILAAARAIHLYRLGGQDTDEGALAGSRADERQKLLSQRSR
Ga0318523_105736711	3300031798	Soil	MMTFIPPRLRKPAVYALAGGLFAAAWLVHGGRLWWVSIIALTGTAASAARLYRLGGTDTDEGARAGSRADERQQLVSLRSRALACNLAAIT
Ga0318497_106964931	3300031805	Soil	MMTFIPPRLRKPAVYALAGGLFAAAWLVHGGRLWWVSIIALTGTAASAARLYRLGGTDTDEGARAGSRADERQQLVSLRSRALACNLAAITSFLGLTAAIAVGASWGWPFLVTFLITGYG
Ga0318567_106226881	3300031821	Soil	MMTFIPPRLRKPAIYALAGVLFAAAWLVRGGPMWWVSIMAVIGTAAGAIHLYLLGGKDTDEGAQAGSRADERQQLISLRSRALACNLAAVTSFIGLTAAIAVKATWGW
Ga0318495_101778771	3300031860	Soil	MMTFIPPRLRKPAVYALAGGLFAAAWLVHGGRLWWVSIIALTGTAASAARLYRLGGTDTDEGARAGSRADERQQLVSLRSRALA
Ga0306921_108561533	3300031912	Soil	MMTFIPPRLRKPAVYALAGLLFAAAWLVHGGHLWFVSIMAVIGTAAAVVRLYRLGGTDTDEGARAGSRADERQQLVSL
Ga0310912_111189301	3300031941	Soil	MMTFIPPRLRKPAGAALAGVLFAAAWLVRGGPLWWVSITAVILAAARAIHLYRLGGQDTDEGALAGSRADERQKLLSQRSRALACNFAVIAAF
Ga0310916_116631542	3300031942	Soil	MMTFIPPRLRKPAVYALAGGLFAAAWLVHGGRLWWVSIIALTGTAASAARLYRLGGTDTDEGARAGSRADERQQLVSLRSRALACNLAAITSF
Ga0306926_129803532	3300031954	Soil	MMTFIPPRLRKPAVYALAGGLFAAAWLVHGGRLWWVSIIALTGTAASAARLYRLGGTDTDEGARAGSR
Ga0318530_104454782	3300031959	Soil	MMTFIPPRLRKPAVYVLAGLLFAAAWLVQGGHLWFVSIMAVIGTAAGAVRLYRLGGTDTDEGARAGSRTDERQQLV
Ga0318563_107181302	3300032009	Soil	MMTFIPPRLRKPAVYALAGGLFAAAWLVHGGRLWWVSIIALTGTAASAARLYRLGGTDTDEGARAGSRADERQQLVSLRSRALACNL
Ga0318507_102235861	3300032025	Soil	MMTFIPPRLRKPAIYALAGVLFAAAWLVRGGPLWWVSIMAVIGTAAGAVRLYLLGRTDTDEGARAGSRADERQQLVSLRSRALACNLAAVTSFIGLTVAIAVG
Ga0310911_104204281	3300032035	Soil	MMTFIPPRLRKPAVYVLAGLLFAAAWLVQGGHLWFVSIMAVIGTAAGAVRLYRLGGTDTDEGARAGSRTDERQQLVSLRSRALACNLAAITSFLGLTAAIAVGASWGWPF
Ga0318559_102214861	3300032039	Soil	MMTFIPPRLRKPAVYVLAGLLFAAAWLVQGGHLWFVSIMAVIGTAAGAVRLYRLGGTDTDEGARAGSRADERQQLVSLRSRALACNLAAVTSFIGLTVAIAVGG
Ga0318556_104057941	3300032043	Soil	MMTFIPPRLRKPAVYALAGGLFAAAWLVHGGRLWWVSIIALTGTAASAARLYRLGGTDTDEGARAGSRADERQQLVSLRSRAL
Ga0318514_100439561	3300032066	Soil	MMTFIPPRLRKPAVYVLAGLLFAAAWLVQGGHLWFVSIMAVIGTAAGAVRLYRLGGTDTDEGARAGSRTDERQQLVSLRSRALACNLAAATSFLGLTAAIAVKAAWGWPFLV
Ga0318514_107773822	3300032066	Soil	MMTFIPPRLRKPAIYALAGLLFAAAWLVQGGHLWFVSIMAVIGTAAGAVRQYRLGGTDTDEGARAGSRADERQQLVSLRSRALACNL
Ga0318518_106494382	3300032090	Soil	MMTFIPPRLRKPAVYALAGGLFAAAWLVHGGRLWWVSIIALTGTAASAARLYRLGGTDTDEGARAGSRADERQQ
Ga0335080_123011102	3300032828	Soil	MMTFIPPRLRKPGIYALAGLLFSAAWLVQGGRLWWVSIPALIGTVAGTVQLYRLGGTDTDEGDRIGSRADERQQLVSLRSRALACNLTA
Ga0335074_102876285	3300032895	Soil	MMTFIPPRLRKPGIFALAGLLFSAAWLVQGSRLWWVSIPALIGTVATTVRLYRLGGTDTDEGDRIGSRADERQQLVSLRSRALA
Ga0335072_109607803	3300032898	Soil	MMTFIPPRLRKPGIYALAGLLFSGAWLVQGGRLWWVSIFALVGTVAGTVRLYQLGGTDTDEGDRIGS
Ga0335083_112179132	3300032954	Soil	MMTFIPPRLRKPGIFALAGLLFSAAWLVQGGRLWWVSIIALIGTVATTVRLYRLGGTDTDEGDRIGSRADERQQLVSLRSRALACNLTAIASFIGLTAAVAVKGTWGWPFL

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088379

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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