Metagenome / Metatranscriptome Family F088612

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088612
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	57 residues
Representative Sequence	MPASFINDPEHWRHRAEEIRTLADDMKDEISKQMMLRIAQDYERLAQRAEERAKRSS
Number of Associated Samples	84
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	57.41 %
% of genes near scaffold ends (potentially truncated)	38.53 %
% of genes from short scaffolds (< 2000 bps)	85.32 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.661 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.358 % of family members)
Environment Ontology (ENVO)	Unclassified (32.110 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (69.725 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.29% β-sheet: 0.00% Coil/Unstructured: 44.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.2: Ribonucleotide reductase-like	d3n20b_	3n20	0.85936
a.25.1.1: Ferritin	d4iwka_	4iwk	0.85598
a.25.1.1: Ferritin	d3bvfa1	3bvf	0.85156
a.25.1.1: Ferritin	d2fzfa1	2fzf	0.84787
a.25.1.1: Ferritin	d1nfva_	1nfv	0.84639

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13545	HTH_Crp_2	14.68
PF07690	MFS_1	5.50
PF06823	DUF1236	4.59
PF04679	DNA_ligase_A_C	2.75
PF02211	NHase_beta	1.83
PF05974	DUF892	1.83
PF13551	HTH_29	0.92
PF00719	Pyrophosphatase	0.92
PF00072	Response_reg	0.92
PF02411	MerT	0.92
PF04392	ABC_sub_bind	0.92
PF08240	ADH_N	0.92
PF11319	VasI	0.92
PF00176	SNF2-rel_dom	0.92
PF13411	MerR_1	0.92
PF02979	NHase_alpha	0.92
PF00925	GTP_cyclohydro2	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	2.75
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	1.83
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	0.92
COG0807	GTP cyclohydrolase II	Coenzyme transport and metabolism [H]	0.92
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.66 %
Unclassified	root	N/A	7.34 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.66 %
Unclassified	root	N/A	7.34 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.66 %
Unclassified	root	N/A	7.34 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	89.91 %
Unclassified	root	N/A	7.34 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	84.40 %
Unclassified	root	N/A	7.34 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	41.28 %
Unclassified	root	N/A	7.34 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.67 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	26.61 %
Unclassified	root	N/A	7.34 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.67 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.92 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	23.85 %
Unclassified	root	N/A	7.34 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.67 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.92 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.34 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.67 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.75 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.92 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.92 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	7.34 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.67 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	2.75 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.92 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.92 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY01B0C4E	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101478702	All Organisms → cellular organisms → Bacteria → Proteobacteria	1289	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105111993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	813	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10121575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	637	Open in IMG/M
3300000955\|JGI1027J12803_104662735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	770	Open in IMG/M
3300001545\|JGI12630J15595_10079842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	643	Open in IMG/M
3300001867\|JGI12627J18819_10022053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2601	Open in IMG/M
3300002245\|JGIcombinedJ26739_100243941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1685	Open in IMG/M
3300002917\|JGI25616J43925_10028717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2464	Open in IMG/M
3300005167\|Ga0066672_10120585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1621	Open in IMG/M
3300005167\|Ga0066672_10609860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	707	Open in IMG/M
3300005172\|Ga0066683_10323273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	959	Open in IMG/M
3300005174\|Ga0066680_10674668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	638	Open in IMG/M
3300005179\|Ga0066684_10027586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3047	Open in IMG/M
3300005181\|Ga0066678_11058847	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300005332\|Ga0066388_100494512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1860	Open in IMG/M
3300005332\|Ga0066388_106616134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	584	Open in IMG/M
3300005468\|Ga0070707_100795737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	909	Open in IMG/M
3300005557\|Ga0066704_10207270	All Organisms → cellular organisms → Bacteria	1327	Open in IMG/M
3300005602\|Ga0070762_11284414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	508	Open in IMG/M
3300005713\|Ga0066905_100189635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1525	Open in IMG/M
3300005713\|Ga0066905_101931239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	547	Open in IMG/M
3300005764\|Ga0066903_100004309	All Organisms → cellular organisms → Bacteria → Proteobacteria	11996	Open in IMG/M
3300005764\|Ga0066903_100670468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1819	Open in IMG/M
3300005764\|Ga0066903_101211765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1402	Open in IMG/M
3300005764\|Ga0066903_102383637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1023	Open in IMG/M
3300005764\|Ga0066903_103251186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	878	Open in IMG/M
3300005764\|Ga0066903_104328036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	759	Open in IMG/M
3300005764\|Ga0066903_108654892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300006796\|Ga0066665_10024078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3879	Open in IMG/M
3300006797\|Ga0066659_10197883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1468	Open in IMG/M
3300006800\|Ga0066660_10055246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2617	Open in IMG/M
3300006845\|Ga0075421_102045456	Not Available	609	Open in IMG/M
3300006880\|Ga0075429_100198334	All Organisms → cellular organisms → Bacteria → Proteobacteria	1758	Open in IMG/M
3300009147\|Ga0114129_12202564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	663	Open in IMG/M
3300010043\|Ga0126380_10430176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	991	Open in IMG/M
3300010043\|Ga0126380_11594476	All Organisms → cellular organisms → Bacteria → Proteobacteria	582	Open in IMG/M
3300010366\|Ga0126379_10029301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4270	Open in IMG/M
3300010366\|Ga0126379_13181060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	550	Open in IMG/M
3300010376\|Ga0126381_104597211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	532	Open in IMG/M
3300011003\|Ga0138514_100101196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	625	Open in IMG/M
3300012198\|Ga0137364_10007574	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5995	Open in IMG/M
3300012198\|Ga0137364_10384216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1050	Open in IMG/M
3300012200\|Ga0137382_10052109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2560	Open in IMG/M
3300012207\|Ga0137381_10203286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1717	Open in IMG/M
3300012356\|Ga0137371_10546927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	892	Open in IMG/M
3300012357\|Ga0137384_11599116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	502	Open in IMG/M
3300012989\|Ga0164305_10364441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1093	Open in IMG/M
3300016357\|Ga0182032_11665008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300016371\|Ga0182034_10518798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	996	Open in IMG/M
3300016371\|Ga0182034_11861733	Not Available	531	Open in IMG/M
3300016422\|Ga0182039_10525305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1025	Open in IMG/M
3300016445\|Ga0182038_11544365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	596	Open in IMG/M
3300018431\|Ga0066655_10006767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4757	Open in IMG/M
3300018433\|Ga0066667_10259051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1324	Open in IMG/M
3300020580\|Ga0210403_10818102	Not Available	739	Open in IMG/M
3300020581\|Ga0210399_10518502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	990	Open in IMG/M
3300021168\|Ga0210406_10183546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1742	Open in IMG/M
3300021405\|Ga0210387_10270231	Not Available	1491	Open in IMG/M
3300021406\|Ga0210386_11615448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	538	Open in IMG/M
3300021432\|Ga0210384_10779661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	853	Open in IMG/M
3300021478\|Ga0210402_10890900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	816	Open in IMG/M
3300021478\|Ga0210402_11072982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	732	Open in IMG/M
3300021479\|Ga0210410_10340245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1345	Open in IMG/M
3300021479\|Ga0210410_11499397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	567	Open in IMG/M
3300021559\|Ga0210409_10426829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1184	Open in IMG/M
3300021560\|Ga0126371_11190141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	899	Open in IMG/M
3300025929\|Ga0207664_11127469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	701	Open in IMG/M
3300025939\|Ga0207665_11111730	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300026329\|Ga0209375_1089863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1402	Open in IMG/M
3300026332\|Ga0209803_1086979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1298	Open in IMG/M
3300026536\|Ga0209058_1011244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6340	Open in IMG/M
3300026551\|Ga0209648_10263783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1265	Open in IMG/M
3300027603\|Ga0209331_1044769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1124	Open in IMG/M
3300028047\|Ga0209526_10139403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1701	Open in IMG/M
3300028047\|Ga0209526_10308102	Not Available	1070	Open in IMG/M
3300028047\|Ga0209526_10384259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	935	Open in IMG/M
3300029636\|Ga0222749_10442063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	695	Open in IMG/M
3300031544\|Ga0318534_10450629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	737	Open in IMG/M
3300031545\|Ga0318541_10556724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	641	Open in IMG/M
3300031545\|Ga0318541_10820921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	519	Open in IMG/M
3300031561\|Ga0318528_10404076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	733	Open in IMG/M
3300031573\|Ga0310915_10112520	All Organisms → cellular organisms → Bacteria → Proteobacteria	1852	Open in IMG/M
3300031573\|Ga0310915_10537997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	829	Open in IMG/M
3300031573\|Ga0310915_11303693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	500	Open in IMG/M
3300031744\|Ga0306918_10488439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	964	Open in IMG/M
3300031747\|Ga0318502_10841065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	557	Open in IMG/M
3300031782\|Ga0318552_10140016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1212	Open in IMG/M
3300031805\|Ga0318497_10056837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2029	Open in IMG/M
3300031833\|Ga0310917_10431335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	897	Open in IMG/M
3300031835\|Ga0318517_10211750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	874	Open in IMG/M
3300031846\|Ga0318512_10134355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1185	Open in IMG/M
3300031890\|Ga0306925_10773130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	999	Open in IMG/M
3300031910\|Ga0306923_11938185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	600	Open in IMG/M
3300031912\|Ga0306921_11198042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	846	Open in IMG/M
3300031941\|Ga0310912_10533598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	914	Open in IMG/M
3300031941\|Ga0310912_11191300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	580	Open in IMG/M
3300031942\|Ga0310916_10390656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1184	Open in IMG/M
3300031946\|Ga0310910_11210555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	586	Open in IMG/M
3300031954\|Ga0306926_11431005	Not Available	801	Open in IMG/M
3300031954\|Ga0306926_12904053	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300032001\|Ga0306922_10040937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4761	Open in IMG/M
3300032044\|Ga0318558_10574856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	563	Open in IMG/M
3300032059\|Ga0318533_10716869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	734	Open in IMG/M
3300032076\|Ga0306924_10000140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	52290	Open in IMG/M
3300032076\|Ga0306924_10007005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	11267	Open in IMG/M
3300032261\|Ga0306920_102055090	Not Available	799	Open in IMG/M
3300033289\|Ga0310914_11285991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	634	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.25%
Host-Associated	Host-Associated	2.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.25%
Plants	Host-Associated → Plants	2.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.23%
Loam	Environmental → Terrestrial → Soil → Loam	21.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	44.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.35%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.34%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_06367800	2170459010	Grass Soil	MPASFINDPAHWRRRAEEARTIAEQMSDLQSKDSMLRIAKDYERLAERAEQRGKGSGQAT
INPhiseqgaiiFebDRAFT_1014787021	3300000364	Soil	MSLLSSEINNPEQWRRRAEEARDIAEQIKDMPSKDVMLRIAKDYERLAKRAEERAIRV*
INPhiseqgaiiFebDRAFT_1051119931	3300000364	Soil	MARASFIDDPNHWRQRAEEMRTLADDMRDAASKKMMLGIADDYELLAKRAEERSGKKTN*
AF_2010_repII_A1DRAFT_101215752	3300000597	Forest Soil	MPASFINDPAHWRQRAEEARTIAEQMNDPQSKESMARIAKDYERLAERAE
JGI1027J12803_1046627351	3300000955	Soil	MSLLSSEINNPEQWRRRAEEARDIAEQIKDMPSKDVMLRIAKDYERLAKRAEERAIR
JGI12630J15595_100798422	3300001545	Forest Soil	ANLSNRARMPASSINDPEHWRARAEEMRRLAEDINDAATKEMMLRIARDYEXLAXRAEERSRPPKVD*
JGI12627J18819_100220532	3300001867	Forest Soil	MPASFINDPAHWRRRAEEARTIAEQMGDLQSKDAMLRIAKDYERLAERAEQRAKGSGQAI
JGIcombinedJ26739_1001617522	3300002245	Forest Soil	LWGTGVPTSAINDAEHWRQRAKEARTLAESMKDEASKQIMLGIAKDYDEMAARAEERAKHPQG*
JGIcombinedJ26739_1002439414	3300002245	Forest Soil	MPASPINDPEHWLKRAEEARALAIHMEPVSKEMMLRIAKDYERLAERAAERAKGERP*
JGI25616J43925_100287173	3300002917	Grasslands Soil	MPTSPINDPEHWCKRAEEMRTLAEEVKDPQSKQMMLRIAEDYERLAKRADERARGERT*
Ga0066672_101205851	3300005167	Soil	MPACSINDSEHWRARAEEMRRLAENINDAATKEMMLRIARDYETLAVRAEERSRPPKVD*
Ga0066672_106098602	3300005167	Soil	MPASFINDPEHWRQRAGEARSVAEQMNEPQSKEAMLRIAKDYERLAERAEQRAKGSSRSG
Ga0066683_103232731	3300005172	Soil	MPGSFINDPEHWRRRADEARSIAEQMSDSPSKEAMLRIAHDYERLAERAEQRAKGSVQSR
Ga0066680_106746681	3300005174	Soil	NDPEHWRHRAQEARSIAEQMSDSPSKEAMLRIAHDYERLAERAEQRAKGSVQSR*
Ga0066684_100275862	3300005179	Soil	MPASFINDPEHWRHRAQEARSIAEQMSDSPSKEAMLRSAHDYERLAERAEQRAKGSVQSR
Ga0066678_110588472	3300005181	Soil	DAEHWRQRAKEARTIADSMNDPQSKEAMLRIAHDYDRLAARAEQRTKGLPHSN*
Ga0066388_1004945123	3300005332	Tropical Forest Soil	MPASFINDPAHWRRRAEEARAIAEQMSDSPSKDAMLRIAKDYERLAERAEERSKGSAQPR
Ga0066388_1066161341	3300005332	Tropical Forest Soil	MPASFINDPVHWRRRAEEARTIADQMSDSPSKDAMLRIAKDYEHLAERAEERAKGSAQPR
Ga0070707_1007957371	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPASFINDPAHWRQRAEEARSVAEQMNEPQSKEAMLRIAKDYERLAER
Ga0066704_102072701	3300005557	Soil	MPASFINDPEHWRHRVQEARSIAEQMSDSPSKEAMLRSAHDYERLAERAEQRAKGSVQSR
Ga0070762_112844141	3300005602	Soil	MPASSINDPEHWRARAEEMRRLAEDMKDAATKEMMLHIARDYENLAVRAEERSKRPPEAE
Ga0066905_1001896351	3300005713	Tropical Forest Soil	MSASFINDPEHWRRRAEEARIIAERMTDATSRQMMLRNAEDYEQLARRAEERLAGLPKSN
Ga0066905_1019312392	3300005713	Tropical Forest Soil	RAEEARTLADQMSDDVSRRMMLKIADDYETLAKRAEERAKRTPE*
Ga0066903_1000043096	3300005764	Tropical Forest Soil	MAQPRFVDDPEHWQHRAEEIRTLADMMKDEQSRMAMLRIAHDYDRLARYAEERQKRQQDQ
Ga0066903_1006704682	3300005764	Tropical Forest Soil	MPASHINDPAHWHQRAEEARILAEQMNDEQSRQMMLRIADDYDRLAQRAKDRLKGVPHSK
Ga0066903_1012117652	3300005764	Tropical Forest Soil	MLTSFINDPEHWRHRAEEIRTLADDMKDEISKQMMLRIAQDYERLAQRAEQRAKRSS*
Ga0066903_1023836372	3300005764	Tropical Forest Soil	VPRYVPTSFINDPEHWRQRAEEIRTLVDDMKDEISKRMMLRIAQDYERLAQRAEERAKRS
Ga0066903_1032511862	3300005764	Tropical Forest Soil	VFSSSINDPAHWRQRAEEMRALAEDIRDAETRAMMERIARDYEFLARRAEERQTGVPQSR
Ga0066903_1043280362	3300005764	Tropical Forest Soil	MPTSFINDPEHWRSRAEEARAIAEQMKDMPSREAMLRIAKDYERLATRAEQRLKRPPQAK
Ga0066903_1086548922	3300005764	Tropical Forest Soil	MPASFINDPEYWRARAKEKRRLAEGMKDQLSIEKILRIARDYEKLAQRAEERSKGAS*
Ga0066665_100240781	3300006796	Soil	MPASFINDPEHWRHRAQEARSIAEQMSDTASKEAMLRITHDYERLAERAEQRAKGSVQSR
Ga0066659_101978832	3300006797	Soil	MPVSFINDPEHWRQRAGEARSVAEQMNEPQSKEAMLRIAKDYERLAERAEQRAKGSSRSG
Ga0066660_100552463	3300006800	Soil	SFINDPEHWRRRADEARSIAEQMSDSPSKEAMLRIAHDYERLAERAEQRAKGSVQSR*
Ga0075421_1020454561	3300006845	Populus Rhizosphere	WRQRAEEMRTLADDMRDAASKKMMLGIADDYELLAKRAEERSGKKTN*
Ga0075429_1001983343	3300006880	Populus Rhizosphere	PASFINDPEHWRQRAGEARSVAEQMNEPQSKEAMLRIAKDYERLAERAEQRAKGSGPSG*
Ga0114129_122025641	3300009147	Populus Rhizosphere	MACASFIDDPNHWRQRAEEMRTLADDMRDAASKKMMLGIADDYELLAKRAEERSGKKTN*
Ga0126380_104301762	3300010043	Tropical Forest Soil	MLASFINDPAHCRQRAEEARTIAEQMNDPQSKESMLRIAKDYERLAERAEQRAKGTT
Ga0126380_115944762	3300010043	Tropical Forest Soil	MPSSFINDPQHWRGRAEEARTPAEEMSDETSKQMIADDYDRLAERAEQR
Ga0126379_100293014	3300010366	Tropical Forest Soil	MPASFINDPAHWRQRAEEARSIAEQMNDTQSKESMLRIAKDYERLAERAEQRAKGSEQPR
Ga0126379_131810602	3300010366	Tropical Forest Soil	MPASHINDPAHWHRRAEEARILAEQMNDEQSRQMMLRIADDYDRLAQRAKDRLKGVPHSR
Ga0126381_1045972111	3300010376	Tropical Forest Soil	MQTTFINDPPLWPHRAEEARTRAEEMSGLNSKDAMLRIAKDYERLAERAEQRGKGSGQAT
Ga0138514_1001011961	3300011003	Soil	MPASSINDPEHWRARAEEMRRLAEDINDAATKEMMLRIARDYETLAVRAEERSRPPKVD*
Ga0137364_100075742	3300012198	Vadose Zone Soil	MPASFINDPEHWRQRADEARSVAEQMNEPQSKEAMLRIAKDYERLAERAEQRAKGSSRSG
Ga0137364_103842162	3300012198	Vadose Zone Soil	FINDPAHWRRRTEEARTIAEQMSDLQSKDSMLRIAKDYERLAERAEQRGKGSGQAT*
Ga0137382_100521091	3300012200	Vadose Zone Soil	MPASFINDPEHWRQRAGEARSVAEQMNEPQSKEAMLRIAKDYERLAERAEQRAK
Ga0137381_102032862	3300012207	Vadose Zone Soil	MPASFINDPEHWRRRADEARSIAEQMSDSPSKEAMLRIAHDYERLAERAEQRAKGSVQPR
Ga0137371_105469272	3300012356	Vadose Zone Soil	VPASFINDPEHWRQRAEEARALAQKMSDAQSKQAMLRIADDYDRLAQRAEKRAKASSKSN
Ga0137384_115991161	3300012357	Vadose Zone Soil	DPEHWRRRADEARSIAEQMSDSPSKEAMLRIAHDYERLAERAEQRAKGSVQPR*
Ga0164305_103644411	3300012989	Soil	MPASSINDPEHWRARAEEMRRLAEDMKDAATKEMMLRIARDYEMLAVRAEERSKRLPEAE
Ga0182032_116650082	3300016357	Soil	MPASFINDPEHWRHRAEEIRTLADGMRDEISRQMMLRIAQDYDRLAQRAEERKTGSS
Ga0182034_105187981	3300016371	Soil	NDPEHWRHRAEEIRTLADDMKDEISKQMMLRIAQDYERLAQRAEERAKRSS
Ga0182034_118617331	3300016371	Soil	MPAWFVNDPEYWRDRAKEKRILAERMKDQLSKEKILRIARDYERLAQRAEERSKG
Ga0182039_105253052	3300016422	Soil	MPASFINDPEHWRHRAEEIRTLADGMRDEISRQMMLRIAQDYERLAQRAEERKT
Ga0182038_115443651	3300016445	Soil	MPASFINDPEYWRDRAKEKRMLAEGMKDQLSKEKILRIARDYEKLAQRAEERSKGTA
Ga0066655_100067672	3300018431	Grasslands Soil	MPASFINDPEHWRHRAQEARSIAEQMSDTASKEAMLRIAHDYERLAERAEQRAKGSVQSR
Ga0066667_102590512	3300018433	Grasslands Soil	MPASFINDPEHWRRRADEARSIAEQMSDSPSKEAMLRIAHDYERLAERAEQRAKGSVQSR
Ga0210403_108181021	3300020580	Soil	LTPAQMSSSFINHPEHWRARAEEMRRLAKDMKDAATKAMMLRNARDYENLAVRAVERAKRPPKVG
Ga0210399_105185021	3300020581	Soil	MPASSINDPEHWRARAEEMRRLAEDMKDAATKEMMLRIARDYENLAVRAEERSRSPKVD
Ga0210406_101835463	3300021168	Soil	PEHWRAEETRTIAEQMSDLQSKDAMLRIAKDYERLAERAEQRGKGSGQAT
Ga0210387_102702311	3300021405	Soil	MSSSFINHPEHWRARAEEMRRLAKDMKDAATKAMMLRNARDYENLAVRAVERAKRPPKVG
Ga0210386_116154481	3300021406	Soil	MPASSINDPEHWRARAEEMRRLAEDMKDAATKEMMLRNARDYENLAVRAEERSRSPKVD
Ga0210384_107796612	3300021432	Soil	TEPKLPASFINDPEHWRARAEEMRRLAEDMKDAATKEMMLRNARDYENLAVRAEERSRSPKVD
Ga0210402_108909002	3300021478	Soil	MPASSINDPGHWRARAEEMRRLAEDMKDAATKEMMLRIARDYENLAVRAEERSRSPKVD
Ga0210402_110729821	3300021478	Soil	KLPASSINDPEHWRARAEEMRRLAEDINDAATKQMMLRIARDYENLAVRAEERSKRPPEA
Ga0210410_103402451	3300021479	Soil	MPASSINDPEHWRARAEEMRRLAEDINDAATKEMMLRIARDYENLAVRAKERSKR
Ga0210410_114993971	3300021479	Soil	MPASFINDPEHWRARAEEMRRLAEDMKDAATKEMMLHIARDYENLAVRAEERS
Ga0210409_104268292	3300021559	Soil	MPASSINDPEHWRARAEEMRRLAEDINDAATKQMMLRIVRDYENLAVRAEERSKRPPEAE
Ga0126371_111901412	3300021560	Tropical Forest Soil	MPASFINDPEHWCHRAEEIRTLADDVKDEISTQMMLRIAQDYERLAQRAEERAKRSS
Ga0207664_111274693	3300025929	Agricultural Soil	MPASSINDPEHWRARAEEMRRLAEDINDAATKEMMLRIARDYENLAVRAEERSK
Ga0207665_111117301	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	QMPASSINDPEHWRARAEEMRRLAEDINDAATKEMMLRIARDYENLAVRAEERSKRPPEA
Ga0209375_10898632	3300026329	Soil	MPASFINDPEHWQHRAQEARSIAEQMSDTASKEAMLRIAHDYERLAERAEQRAKGSVQSR
Ga0209803_10869792	3300026332	Soil	MPASFINDPEHWRHRAQEARSIAEQMRLAERAEQRAKGSVQSR
Ga0209058_10112443	3300026536	Soil	MPASFINDPEHWRHRAQEARSIAEQMSDSPSKEAMLRIAHDYERLAERAEQRAKGSVQSR
Ga0209648_102637833	3300026551	Grasslands Soil	MPTSPINDPEHWCKRAEEMRTLAEEVKDPQSKQMMLRIAEDYERLAKRADERARGERT
Ga0209331_10447691	3300027603	Forest Soil	MPASSINDPEHWRARAEEMRRLAEDINDAATKEMMLRIARDYENLAVRAEARSKCPPKAE
Ga0209526_101394032	3300028047	Forest Soil	MPASPINDPEHWLKRAEEARALAIHMEPVSKEMMLRIAKDYERLAERAAERAKGERP
Ga0209526_103081022	3300028047	Forest Soil	LHWRARAEEMRRLAEDINDAATKEMMLRIARDYENLAVRAEARSKCPPKAE
Ga0209526_103842592	3300028047	Forest Soil	MPASFINYPEHWRARAEEMRRLAEDLKDAATKEMMLRIARDYETLAVRAEERSRPPKVD
Ga0222749_104420632	3300029636	Soil	MPASSINDPEHWRARAEEMRRLAEDINDAATKQMMLRIARDYENLAVRAEERSKRPPEAE
Ga0318534_104506291	3300031544	Soil	INDPEHWRKRTDEARNLADDMKDEISKQMMLQIAADYGHLARRARARRWRSRFPASSAR
Ga0318541_105567242	3300031545	Soil	MPASFINDPEHWRHRAEEIRTLADDMNDEISKQMMLRIAQDYERLAQRAEERAKRSS
Ga0318541_108209211	3300031545	Soil	MPASFINDPEYWRDRAKEKRMLAEGMKDQLSKEKILRIARDYERLAQRAEERSKG
Ga0318528_104040762	3300031561	Soil	MPASFINDPEHWRHRAEEIRTLADDMKDEISKQMMLRIAQDYERLAQRAEERAKRSS
Ga0310915_101125201	3300031573	Soil	VTIAAGGADMPASFINDPAHWRQRAGEARTIAEQMNDPQSKESMVRIAKDYERLAERAEQRAKGFGTTKISSADG
Ga0310915_105379971	3300031573	Soil	EHWRHRAEEIRTLADDMKDEISKQMMLRIAQDYERLAQRAEERAKRSS
Ga0310915_113036931	3300031573	Soil	MPASFINDPEYWRDRAKEKRMMAEGMKDQFSKEKILRIARDYERLAQRAEERSKG
Ga0306918_104884392	3300031744	Soil	MPASFINEPEHWRHRAEEIRTLADGMKDEISRQMMLRIAQDYDRLA
Ga0318502_108410652	3300031747	Soil	PEHWRHRAEEIRTLADGMKDEISKQMMLRIAQDYDRLAQRAEERKTGSS
Ga0318552_101400163	3300031782	Soil	LINDPEHWRKRTDEARNLADDMKDEISKQMMLQIAADYGHLARRARARRWRSRFPASSAR
Ga0318497_100568371	3300031805	Soil	PEHWRKRTDEARNLADDMKDEISKQMMLQIAADYGHLARRARARRWRSRFPASSAR
Ga0310917_104313351	3300031833	Soil	MPASFINDPEYWRDRAKEKWTLAERMKDQLSKEKILRIARDYERLAQRAEERSKG
Ga0318517_102117502	3300031835	Soil	MPASFINDPEHWRHRAEEIRTLADDMKDEISKQMMLRIAQDYDRLAQRAEERKTGSS
Ga0318512_101343551	3300031846	Soil	HRDCCLMPASFINDPEHWRHRAEEIRTLADDMKDEISKQMMLRIAQDYDRLAQRAEERKTGSS
Ga0306925_107731302	3300031890	Soil	MPASFINEPEHWRHRAEEIRTLADGMKDEISRQMMLRIAQDYDRLAQRAEERKTGSS
Ga0306923_119381852	3300031910	Soil	MPASFINDPEYWRARAREKRMLAEGMKDQIAKEKILRIVRDYERLAQRAEERSKDNS
Ga0306921_111980421	3300031912	Soil	MPASFINDPEYWRDRAKEKRTLAEGMKDQLSKEKILRIARDYERLAQRAEERSKGAS
Ga0310912_105335981	3300031941	Soil	GRVDMPASLVNDPEYWRDRAREKRALAEHLRNELSKETIFRIANDYERLAQRAEERSRGSPQS
Ga0310912_111913002	3300031941	Soil	TPCPMPTSFINDPEHWRHRAEEIRTLADDMKDEISKQMMLRIAQDYERLAQRAEERAKRS
Ga0310916_103906561	3300031942	Soil	MPASYINDPAHWRQRAEEARILAEQMNDEKSKQMMLRIADDYDRLAQRAKDRAKGSPQS
Ga0310910_112105552	3300031946	Soil	MPASFINDPEHWRHRAEEIRTLADGMKDEISKQMMLRIAQDYDRLAQRAEERKTGSS
Ga0306926_114310052	3300031954	Soil	NDPEYWRARAREKRMLAEGMKDQIAKEKILRIVRDYERLAQRAEERSKDNS
Ga0306926_129040531	3300031954	Soil	MPASFINDPEYWRDRAKEKRMLAEGMKDQLSKEKILRIARDYERLAQR
Ga0306922_100409376	3300032001	Soil	MPASFINDPAHWRQRAGEARTIAEQMNDPQSKESMVRIAKDYERLAERAEQRAKGFGTTKISSADG
Ga0318558_105748562	3300032044	Soil	MPASFINDPEHWRHRAEEIRTLADDMKDEISKQMMLRIAQDYERLAQRAEERAKRS
Ga0318533_107168691	3300032059	Soil	MPTSIIDDPEHWRGRVEEARAIAEQMQDMPSREAMLRIAKDYERLAKRAEQRLKRPP
Ga0306924_100001409	3300032076	Soil	VTIAAGGADMPASFINDPAHWRQRAEEVRTIAEQMNDPQSKESMVRIAKDYERLAERAEQRAKGFGTTKISSADG
Ga0306924_100070053	3300032076	Soil	MPASFLNDPEHWRHRAEEIRTLADDMKDEISKQMMLRIAQDYERLAQRAEERAKRSS
Ga0306920_1020550901	3300032261	Soil	WLRETIGGSGKMPASFINDAEYWRDRAREKRMLAEGMKDQIAKEKILRIVRDYERLAQRAEERSKDNS
Ga0310914_112859911	3300033289	Soil	MPASSINDPEYWRDRAKEKRMMAEGMKDQFSKEKILRIARDYERLAQRAEERSKG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088612

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences