Metagenome / Metatranscriptome Family F088646

Basic Information
Family ID	F088646
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	72 residues
Representative Sequence	MRILMASVSLSAVLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR
Number of Associated Samples	96
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.52 %
% of genes near scaffold ends (potentially truncated)	39.45 %
% of genes from short scaffolds (< 2000 bps)	79.82 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Most Common Taxonomy
Group	Bacteria (66.055 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (10.092 % of family members)
Environment Ontology (ENVO)	Unclassified (38.532 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (63.303 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 27.00% β-sheet: 0.00% Coil/Unstructured: 73.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00158	Sigma54_activat	32.11
PF05977	MFS_3	3.67
PF12587	DUF3761	2.75
PF01370	Epimerase	2.75
PF00072	Response_reg	1.83
PF13620	CarboxypepD_reg	1.83
PF13365	Trypsin_2	1.83
PF02574	S-methyl_trans	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	3.67
COG0646	Methionine synthase I (cobalamin-dependent), methyltransferase domain	Amino acid transport and metabolism [E]	0.92
COG2040	Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)	Amino acid transport and metabolism [E]	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.06 %
Unclassified	root	N/A	33.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.06 %
Unclassified	root	N/A	33.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.06 %
Unclassified	root	N/A	33.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	31.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.59 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.94 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	28.44 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	28.44 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	28.44 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886007\|SwRhRL2b_contig_3036139	All Organisms → cellular organisms → Bacteria	2294	Open in IMG/M
3300000550\|F24TB_11489028	Not Available	960	Open in IMG/M
3300000789\|JGI1027J11758_12352811	Not Available	518	Open in IMG/M
3300000891\|JGI10214J12806_11421467	Not Available	754	Open in IMG/M
3300003267\|soilL1_10004230	All Organisms → cellular organisms → Bacteria	3534	Open in IMG/M
3300003324\|soilH2_10030153	All Organisms → cellular organisms → Bacteria → Proteobacteria	2435	Open in IMG/M
3300004114\|Ga0062593_100005381	All Organisms → cellular organisms → Bacteria → Acidobacteria	5297	Open in IMG/M
3300004114\|Ga0062593_100228393	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
3300004114\|Ga0062593_100503865	Not Available	1123	Open in IMG/M
3300004157\|Ga0062590_100010268	All Organisms → cellular organisms → Bacteria → Acidobacteria	3868	Open in IMG/M
3300004480\|Ga0062592_101258379	Not Available	696	Open in IMG/M
3300004643\|Ga0062591_100626242	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300004798\|Ga0058859_11560276	Not Available	536	Open in IMG/M
3300004800\|Ga0058861_11676648	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300004801\|Ga0058860_12107255	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	882	Open in IMG/M
3300004803\|Ga0058862_12233147	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	897	Open in IMG/M
3300005093\|Ga0062594_100240571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1312	Open in IMG/M
3300005213\|Ga0068998_10167753	Not Available	533	Open in IMG/M
3300005289\|Ga0065704_10002253	All Organisms → cellular organisms → Bacteria	7723	Open in IMG/M
3300005294\|Ga0065705_10003194	All Organisms → cellular organisms → Bacteria	16875	Open in IMG/M
3300005294\|Ga0065705_10958091	Not Available	559	Open in IMG/M
3300005295\|Ga0065707_10003534	All Organisms → cellular organisms → Bacteria	4277	Open in IMG/M
3300005332\|Ga0066388_107746322	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300005334\|Ga0068869_100663569	Not Available	886	Open in IMG/M
3300005336\|Ga0070680_100393560	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1181	Open in IMG/M
3300005338\|Ga0068868_100090223	All Organisms → cellular organisms → Bacteria	2468	Open in IMG/M
3300005353\|Ga0070669_101823849	Not Available	531	Open in IMG/M
3300005354\|Ga0070675_100306889	All Organisms → cellular organisms → Bacteria	1399	Open in IMG/M
3300005354\|Ga0070675_100684816	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	933	Open in IMG/M
3300005356\|Ga0070674_100224549	All Organisms → cellular organisms → Bacteria	1463	Open in IMG/M
3300005364\|Ga0070673_100259027	All Organisms → cellular organisms → Bacteria	1519	Open in IMG/M
3300005456\|Ga0070678_100581625	Not Available	998	Open in IMG/M
3300005458\|Ga0070681_10726040	Not Available	910	Open in IMG/M
3300005616\|Ga0068852_100837847	Not Available	935	Open in IMG/M
3300005713\|Ga0066905_100210754	All Organisms → cellular organisms → Bacteria	1461	Open in IMG/M
3300005842\|Ga0068858_101968092	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300005937\|Ga0081455_10692539	Not Available	650	Open in IMG/M
3300006046\|Ga0066652_100288667	All Organisms → cellular organisms → Bacteria	1452	Open in IMG/M
3300006049\|Ga0075417_10048584	All Organisms → cellular organisms → Bacteria	1825	Open in IMG/M
3300006791\|Ga0066653_10709981	Not Available	520	Open in IMG/M
3300006844\|Ga0075428_101065364	Not Available	854	Open in IMG/M
3300006854\|Ga0075425_100040933	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5173	Open in IMG/M
3300006854\|Ga0075425_100051061	All Organisms → cellular organisms → Bacteria	4632	Open in IMG/M
3300006871\|Ga0075434_100390289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1413	Open in IMG/M
3300006904\|Ga0075424_101069260	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	860	Open in IMG/M
3300006914\|Ga0075436_101259704	Not Available	559	Open in IMG/M
3300009092\|Ga0105250_10185596	Not Available	874	Open in IMG/M
3300009093\|Ga0105240_12689692	Not Available	513	Open in IMG/M
3300009094\|Ga0111539_10317564	All Organisms → cellular organisms → Bacteria	1813	Open in IMG/M
3300009100\|Ga0075418_10164957	All Organisms → cellular organisms → Bacteria	2358	Open in IMG/M
3300009147\|Ga0114129_11411891	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	859	Open in IMG/M
3300009156\|Ga0111538_10197199	All Organisms → cellular organisms → Bacteria	2555	Open in IMG/M
3300009176\|Ga0105242_11806557	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300009177\|Ga0105248_13040875	Not Available	534	Open in IMG/M
3300010038\|Ga0126315_11269057	Not Available	501	Open in IMG/M
3300010043\|Ga0126380_10057789	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2133	Open in IMG/M
3300010047\|Ga0126382_10358555	All Organisms → cellular organisms → Bacteria	1121	Open in IMG/M
3300010360\|Ga0126372_12899941	Not Available	531	Open in IMG/M
3300010362\|Ga0126377_11682630	Not Available	709	Open in IMG/M
3300010362\|Ga0126377_11916016	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300010366\|Ga0126379_10040585	All Organisms → cellular organisms → Bacteria → Acidobacteria	3743	Open in IMG/M
3300010403\|Ga0134123_10456399	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1190	Open in IMG/M
3300012907\|Ga0157283_10422099	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300012948\|Ga0126375_10383808	Not Available	1009	Open in IMG/M
3300012958\|Ga0164299_10176432	Not Available	1210	Open in IMG/M
3300012971\|Ga0126369_12933124	Not Available	558	Open in IMG/M
3300012989\|Ga0164305_11794507	Not Available	554	Open in IMG/M
3300013297\|Ga0157378_11539125	Not Available	710	Open in IMG/M
3300014969\|Ga0157376_10450228	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300014969\|Ga0157376_10641958	All Organisms → cellular organisms → Bacteria	1061	Open in IMG/M
3300015371\|Ga0132258_10053977	All Organisms → cellular organisms → Bacteria → Proteobacteria	9215	Open in IMG/M
3300015371\|Ga0132258_12419889	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1315	Open in IMG/M
3300015371\|Ga0132258_12713657	All Organisms → cellular organisms → Bacteria	1235	Open in IMG/M
3300015373\|Ga0132257_102993755	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300015374\|Ga0132255_100406842	All Organisms → cellular organisms → Bacteria → Proteobacteria	1982	Open in IMG/M
3300017792\|Ga0163161_10433972	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300019361\|Ga0173482_10396718	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300025901\|Ga0207688_10089260	All Organisms → cellular organisms → Bacteria	1768	Open in IMG/M
3300025907\|Ga0207645_10034601	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3246	Open in IMG/M
3300025908\|Ga0207643_10373357	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	898	Open in IMG/M
3300025910\|Ga0207684_11395892	Not Available	573	Open in IMG/M
3300025912\|Ga0207707_11385551	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300025920\|Ga0207649_10863063	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300025923\|Ga0207681_11727522	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300025924\|Ga0207694_11840543	Not Available	508	Open in IMG/M
3300025926\|Ga0207659_10902232	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300025927\|Ga0207687_11284705	Not Available	629	Open in IMG/M
3300025931\|Ga0207644_10109336	All Organisms → cellular organisms → Bacteria	2088	Open in IMG/M
3300025931\|Ga0207644_11506372	Not Available	565	Open in IMG/M
3300025932\|Ga0207690_10376139	All Organisms → cellular organisms → Bacteria	1128	Open in IMG/M
3300025937\|Ga0207669_10714394	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	825	Open in IMG/M
3300025938\|Ga0207704_11973246	Not Available	502	Open in IMG/M
3300025941\|Ga0207711_10121016	All Organisms → cellular organisms → Bacteria	2337	Open in IMG/M
3300025942\|Ga0207689_10546883	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	972	Open in IMG/M
3300025942\|Ga0207689_10722082	Not Available	841	Open in IMG/M
3300025945\|Ga0207679_10151897	All Organisms → cellular organisms → Bacteria	1886	Open in IMG/M
3300026075\|Ga0207708_10158542	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1786	Open in IMG/M
3300026089\|Ga0207648_11711837	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	590	Open in IMG/M
3300026095\|Ga0207676_10031746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3974	Open in IMG/M
3300031562\|Ga0310886_10260747	Not Available	974	Open in IMG/M
3300031716\|Ga0310813_10035932	All Organisms → cellular organisms → Bacteria	3545	Open in IMG/M
3300031720\|Ga0307469_10460255	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1104	Open in IMG/M
3300031720\|Ga0307469_11737374	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300031820\|Ga0307473_11267501	Not Available	550	Open in IMG/M
3300031943\|Ga0310885_10077441	All Organisms → cellular organisms → Bacteria	1458	Open in IMG/M
3300032003\|Ga0310897_10066178	All Organisms → cellular organisms → Bacteria	1351	Open in IMG/M
3300032012\|Ga0310902_10388729	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300032180\|Ga0307471_101459907	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	843	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	55.96%
Environmental	Environmental	44.04%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	52.29%
Terrestrial	Environmental → Terrestrial	43.12%
Human	Host-Associated → Human	3.67%
Aquatic	Environmental → Aquatic	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	32.11%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.18%
Digestive System	Host-Associated → Human → Digestive System	3.67%
Marine	Environmental → Aquatic → Marine	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.84%
Loam	Environmental → Terrestrial → Soil → Loam	7.34%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.42%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	3.67%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.92%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.51%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.84%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.67%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.67%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	3.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.34%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	7.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.42%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.59%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.67%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	3.67%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.75%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.83%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005213	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL2b_0278.00007310	2162886007	Switchgrass Rhizosphere	MAKEAAMRILMASISLTAVLFLSGCATLQKYPAFGNAAGGRTVLFDRQGAKNIYPPSHSEPVVVPQSRYSVIR
F24TB_114890282	3300000550	Soil	MRILMASISLTAVLFLSGCASFQKYPAFGRLAGAGQYVTFDRQGARNLVPPSHAEPVVVPQSRYSVIR*
JGI1027J11758_123528111	3300000789	Soil	RCTLDMAKEVAMRILLASISLSAVLLLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAAKNLVPPSNAEPVVVPQSRYSVIR*
JGI10214J12806_114214672	3300000891	Soil	DAWSTCRPPLMREGGTSDAPYVIAKEAAMRILMASISITAALLLSGCVTLQKYPAFGNAAGGRVVEFDRQGARNILPPSHSEPPIVPNSRYSVIR*
soilL1_100042302	3300003267	Sugarcane Root And Bulk Soil	MRILMASISLTAVLFFSGCTTFQKYPAFGNLTGGGRVVLFDRQAARNIYPPARSEPVVVPQSRYSVIR*
soilH2_100301533	3300003324	Sugarcane Root And Bulk Soil	MRILTACMSLTAMLLLSGCVTLQKYPAFGNAAGGRIVEYDRQGARNLVPPSHGEPVTVPNSRYSVIR*
Ga0062593_1000053812	3300004114	Soil	MREGGTSDAPYVIAKEAAMRILMASISITAALLLSGCVTLQKYPAFGNAAGGRVVEFDRQGARNILPPSHSEPPIVPNSRYSVIR*
Ga0062593_1002283932	3300004114	Soil	MHRTYAKEAAMRILMASVSLTAVLFLSGCASFQKYPAFGNAAGGRVVLFDRQGARNVYPPSRSEPVVVPQSRYSVIR*
Ga0062593_1005038652	3300004114	Soil	MRLLMASISLTAVLFLSGCASIQKYPAFGTKVGGGRVVLFDRQGARNVYPPSRSEPVVVPQSRYSVIR*
Ga0062590_1000102685	3300004157	Soil	MRILMASVSLTAVLFLSGCASFQKYPAFGNAAGGRVVLFDRQGARNVYPPSRSEPVVVPQSRYSVIR*
Ga0062592_1012583792	3300004480	Soil	AMRILMASISLTAMLFLSGCATLQKYPAFGNAAGGRVVLFDRQGAKNIYPPSHSEPVVVPQSRYSVIR*
Ga0062591_1006262423	3300004643	Soil	APPMHRTYAKEAAMRILMASVSLTAVLFLSGCASFQKYPAFGNAAGGRVVLFDRQGARNVYPPSRSEPVVVPQSRYSVIR*
Ga0058859_115602762	3300004798	Host-Associated	TVCIAKEAAMRILMASVSLSAMLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR*
Ga0058861_116766482	3300004800	Host-Associated	MRILMASVSLSAVLFLSGCASFDTSFQKNRRLDVWQGRGVVTFDRQAARNLVPPSHAEPVVVPQSQYSDPLTVGFGR
Ga0058860_121072552	3300004801	Host-Associated	MRILMASVSLSAMLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR*
Ga0058862_122331472	3300004803	Host-Associated	MRILMASISLSAMLLLSGCASVNTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR*
Ga0062594_1002405712	3300005093	Soil	MRILMASISLSAMLLLSGCASFQKYPAFGRLAGAGRIVTYDRQGARNLLPPSHAEPVVVPQSQYSVIR*
Ga0068998_101677531	3300005213	Natural And Restored Wetlands	MRILMASISLTAVLFLSGCATLQKNPAFGNLAGAGRVVLFDRQGAKNLVPPSHTEPVVVPSSRYSVIR*
Ga0065704_100022534	3300005289	Switchgrass Rhizosphere	MRILMASISLTAVLFLSGCATLQKYPAFGNAAGGRXVLFDRQGAXNIYPPSHSEPVVVPQSRYSVIR*
Ga0065705_100031946	3300005294	Switchgrass Rhizosphere	MRILMASISLTAVLFLSGCATLQKYPAFGNAAGGRTVLFDRQGAXNIYPPSHSEPVVVPQSRYSVIR*
Ga0065705_109580912	3300005294	Switchgrass Rhizosphere	MRILMASVSLSAVLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR*
Ga0065707_100035342	3300005295	Switchgrass Rhizosphere	MRILMASISLTAVLFLSGCATLQKYPAFGNAAGGRTVLFDRQGAKNIYPPSHSEPVVVPQSRYSVIR*
Ga0066388_1077463221	3300005332	Tropical Forest Soil	MRILVASISLSAVLLLSGCASVQTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSRYSVIR*
Ga0068869_1006635691	3300005334	Miscanthus Rhizosphere	DAVGDSGTCDAPNVTAKEASMRILMASVSLISVLFLSGCVTLQKSPAFGTLAGAGRYVTYDRQAARNLYPPSRHEPVPVPQSQYSVIR*
Ga0070680_1003935603	3300005336	Corn Rhizosphere	MRILMASVSLSAMLLLSGCASVNTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR*
Ga0068868_1000902235	3300005338	Miscanthus Rhizosphere	MRILMASVSLSAMLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEP
Ga0070669_1018238491	3300005353	Switchgrass Rhizosphere	KEAAMRILMASVSLSATLLLSGCASVNTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSRYSVIR*
Ga0070675_1003068892	3300005354	Miscanthus Rhizosphere	MRILMASVSLISVLFLSGCVTLQKSPAFGTLAGAGRYVTYDRQAARNLYPPSRHEPVPVPQSQYSVIR*
Ga0070675_1006848162	3300005354	Miscanthus Rhizosphere	MHRWMAKEAAMRILMASISLTATLFFSGCTTLQKYPAFGNAAGGRVVLFDRQAARNLHPPSRSEPVVVPQSRYSVIR*
Ga0070674_1002245493	3300005356	Miscanthus Rhizosphere	RILMASISLSAVLLLSGCASFQKYPAFGRLAGAGRIVTYDRQGARNLLPPSHAEPVVVPQSQYSVIR*
Ga0070673_1002590273	3300005364	Switchgrass Rhizosphere	MRILMASVSLVSGLFLSGCATLQKSDAFGTLAGAGRYVEYDRQGARNLYPPSSSEPLPVPQSRYSVIR*
Ga0070678_1005816253	3300005456	Miscanthus Rhizosphere	MRILMASVSLSAMLLLSGCASVNTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSRYSVIR*
Ga0070681_107260403	3300005458	Corn Rhizosphere	MAKEAAMRILMASISLTATLFFSGCTTLQKYPAFGNAAGGRVVLFDRQAARNLHPPSRSEPVVVPQSRYSVIR*
Ga0068852_1008378473	3300005616	Corn Rhizosphere	GSSDAYASGRPPRSRWAAPPMHRTYAKEAAMRILMASVSLSAMLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR*
Ga0066905_1002107543	3300005713	Tropical Forest Soil	MRILMASISLTAVLFLSGCASVETSWQKHPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSRYSVIR*
Ga0068858_1019680922	3300005842	Switchgrass Rhizosphere	MHRTYAKEAAMRILMASVSLTAVLFLSGCASFQKYPAFGNAAGGRVVLFDRQGARNVYPPSRSE
Ga0081455_106925392	3300005937	Tabebuia Heterophylla Rhizosphere	MRILMASISLGAALFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR*
Ga0066652_1002886672	3300006046	Soil	VGDSGTRDAPNVTAKEVAMRILMASVVVMSVLFLSGCATLQGNPAFGTLAGAGRYVEYDRQGARNFFPPSSSEPVPVPQSRYSVIR*
Ga0075417_100485842	3300006049	Populus Rhizosphere	MRILMASISLTAVLFLSGCASFDTSFQKHPAFGRLAGAGQIVTFDRQGARNLVPPSHAEPVVVPQSRYSVIR*
Ga0066653_107099812	3300006791	Soil	MRILMASVVVMSVLFLSGCATLQRNPAFGTLAGAGRYVEYDRQGARNFFPPSSSEPVPVPQSRYSVIR*
Ga0075428_1010653641	3300006844	Populus Rhizosphere	EAAMRILMASISLSALLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR*
Ga0075425_1000409332	3300006854	Populus Rhizosphere	MRILMASVSLISVLFLSGCVTLQKSPAFGTLAGAGRYVTYDRQAARNLYPPSRHEPVAVPQSQYSVIR*
Ga0075425_1000510614	3300006854	Populus Rhizosphere	MRILMASVSLISLLFLSGCATLQRNPAFGTLAGAGRYVEYDRQGARNFFPPSSSEPVPVPQSRYSVIR*
Ga0075434_1003902891	3300006871	Populus Rhizosphere	MRILMASVSLISVLFLSGCVTLQKSPAFGTLAGAGRYVTYDRQAARNLYPPSRHEPVP
Ga0075424_1010692603	3300006904	Populus Rhizosphere	MRILMASISLTATLFFSGCTTLQKYPAFGNAAGGRVVLFDRQAARNLHPPSRSEPVVVPQSRYSVIR*
Ga0075436_1012597042	3300006914	Populus Rhizosphere	MRILMASVLVMSVLFLSGCATLQRNPAFGTLAGAGRYVEYDRQGARNFFPPSSSEPVPVPQSRYSVIR*
Ga0105250_101855961	3300009092	Switchgrass Rhizosphere	SAMLLLSGCASFQKYPAFGRLAGAGRIVTYDRQGARNLLPPSHAEPVVVPQSQYSVIR*
Ga0105240_126896922	3300009093	Corn Rhizosphere	VSLSAVLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR*
Ga0111539_103175643	3300009094	Populus Rhizosphere	MRILMASISLSAVLLFSGCASFQKYPAFGRLAGAGRIVTYDRQAARNLVPPSHAEPVVVPQSQYSVIR*
Ga0075418_101649572	3300009100	Populus Rhizosphere	MRILMASISLSALLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR*
Ga0114129_114118912	3300009147	Populus Rhizosphere	MRILMASISLTAALLLSGCVTLQKYPAFGNAAGGRIVAFDRQGAKNLYPPSHAEPVVVPQSRYSVIR*
Ga0111538_101971993	3300009156	Populus Rhizosphere	MHRTDAKEAAMRILMASVSLTAVLFLSGCASFQKYPAFGNAAGGRVVLFDRQGARNVYPPSRSEPVVVPQSRYSVIR*
Ga0105242_118065572	3300009176	Miscanthus Rhizosphere	MRILMASVSLSAMLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSRYSVIR*
Ga0105248_130408752	3300009177	Switchgrass Rhizosphere	MHNVTAKEAYMRILMASVSLVSGLFLSGCATLQKSDAFGTLAGAGRYVEYDRQGARNLYPPSSSEPLPVPQSR
Ga0126315_112690572	3300010038	Serpentine Soil	LTGRDAAVPEMHVHHHKEAAMRILMASVSLTAVVFLSGCVTLQKYPAFGHAAGGRVVEFDRRGAKNIWPSSHAEPVPVPNSRYSVIR*
Ga0126380_100577893	3300010043	Tropical Forest Soil	MRILMASISLTAVLFLSGCASVETSFQKHPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSRYSVIR*
Ga0126382_103585551	3300010047	Tropical Forest Soil	MRILVASISLSAVLLLSGCASVQTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR*
Ga0126372_128999412	3300010360	Tropical Forest Soil	VRILMASVSLSAVLLFSGCASFDTSFQKHPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSRYSAIR*
Ga0126377_116826302	3300010362	Tropical Forest Soil	MRILMASVSLSAVLLFSGCASFDTSFQKHPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSRYSAIR*
Ga0126377_119160162	3300010362	Tropical Forest Soil	MRILMASISFTAVLMLSGCATTIQKYPAFGTLAGAGQTVLYDRQGARNLLPPSRSEPVVVPQSRYSVIR*
Ga0126379_100405855	3300010366	Tropical Forest Soil	MRILMAAVSLISVLFLSGCVTLQKNPAFGTLAGAGQYVTYDRQGARNFFPPSRVEPSPVPQSRYSVIR*
Ga0134123_104563993	3300010403	Terrestrial Soil	MRILMASVSLTAALLLSGCVTLQKYPAFGNAAGGRVVEFDRQGARNLLPPPHGEPVVVPK
Ga0157283_104220992	3300012907	Soil	MRILMASISLTAMLFLSGCATLQKYPAFGNAAGGRVVLFDRQGAKNIYPPSHSEPVVVPQSRYSVIR*
Ga0126375_103838083	3300012948	Tropical Forest Soil	MRILLASISLSAVLLLSGCASVQTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSRYSVIR*
Ga0164299_101764323	3300012958	Soil	VGDSGTCDAPNLTAKEASMRILMASVSLISVLFLSGCVTLQKSPAFGTLAGAGRYVTYDRQAARNLYPPSRHEPVAVPQSQYSVIR*
Ga0126369_129331242	3300012971	Tropical Forest Soil	AADAVGDSGTCDAPNIIAKETAMRILMAAVSLISVLFLSGCVTLQKNPAFGTLAGAGQYVTYDRQGARNFFPPSSAEPTPVPQSRYSVIR*
Ga0164305_117945072	3300012989	Soil	RILMASVSLISVLFLSGCVTLQKSPAFGTLAGAGRYVTYDRQAARNLYPPSRHEPVPVPQSQYSVIR*
Ga0157378_115391251	3300013297	Miscanthus Rhizosphere	AMLILMASFSLSAMLLLSGCASVNTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSRYSVIR*
Ga0157376_104502283	3300014969	Miscanthus Rhizosphere	MRILMASVSLSAMLFLSVCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR*
Ga0157376_106419583	3300014969	Miscanthus Rhizosphere	MRILMASVSLSAVLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSV
Ga0132258_100539774	3300015371	Arabidopsis Rhizosphere	MSILMASISLTAVLFLSGCATLQKNAAFGNTAGGGRVVTYDRQGARNLYPPSRSEPVVVPQSRYSVIR*
Ga0132258_124198894	3300015371	Arabidopsis Rhizosphere	MRILMASISLSALMLLSGCASFDTSFQKYPAFGRLAGAGRIVPYDRQGARTLVPPSHAEPVVVPQ
Ga0132258_127136573	3300015371	Arabidopsis Rhizosphere	VGDSGTCDAPNLTAKEASMRILMASVSLISVLFLSGCVTLQKSPAFGTLAGAGRYVTYDRQAARNLYPPSRHEPVPVPQSQYSVIR*
Ga0132257_1029937551	3300015373	Arabidopsis Rhizosphere	MAKEAAMRILMASISLTAVLFLSGCATFQKYPAFGNAAGGRAVLFDRQGAKNIYPPSHSEPVVVPQSRY
Ga0132255_1004068424	3300015374	Arabidopsis Rhizosphere	MRILMASVSLSAVLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYYVIR*
Ga0163161_104339723	3300017792	Switchgrass Rhizosphere	EVAMRILMASISLSAMLLLSGCASFQKYPAFGRLAGAGRIVTYDRQGARNLLPPSHAEPVVVPQSQYSVIR
Ga0173482_103967181	3300019361	Soil	MHRTYAKEAAMRILMASVSLTAVLFLSGCASFQKYPAFGNAAGGRVVLFDRQGARNVYPPSRSEPVVVPQSRYSVIR
Ga0207688_100892603	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MRILMASISLSAMLLLSGCASFQKYPAFGRLAGAGRIVTYDRQGARNLLPPSHAEPVVVPQSQYSVIR
Ga0207645_100346011	3300025907	Miscanthus Rhizosphere	SISLSAVLLLSGCASFQKYPAFGRLAGAGRIVTYDRQGARNLVPPSHAEPVVVPQSQYSVIR
Ga0207643_103733572	3300025908	Miscanthus Rhizosphere	MRILMASVSLSAMLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR
Ga0207684_113958922	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRILMASVSLSAVLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPLSHAEPVVVPQSQYSVIR
Ga0207707_113855512	3300025912	Corn Rhizosphere	MRILMASVSLSAMLLLSGCASVNTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSRYS
Ga0207649_108630632	3300025920	Corn Rhizosphere	MRILMASVSLSAMLLLSGCASVNTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSRYSVIR
Ga0207681_117275222	3300025923	Switchgrass Rhizosphere	MRILMASVSLSAMLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSRYSVIR
Ga0207694_118405432	3300025924	Corn Rhizosphere	RSPAADAVGDSGTCDAPNVTAKEALMRILMASVSLISVLFLSGCVTLQKSPAFGTLAGAGRYVTYDRQAARNLYPPSRHEPVPVPQSQYSVIR
Ga0207659_109022322	3300025926	Miscanthus Rhizosphere	MRILMASISLTATLFFSGCTTLQKYPAFGNAAGGRVVLFDRQAARNLHPPSRSEPVVVPQ
Ga0207687_112847051	3300025927	Miscanthus Rhizosphere	AKEVAMRILMASISLSAMLLLSGCASFQKYPAFGRLAGAGRIVTYDRQGARNLLPPSHAEPVVVPQSQYSVIR
Ga0207644_101093363	3300025931	Switchgrass Rhizosphere	MRILMASVSLISVLFLSGCVTLQKSPAFGTLAGAGRYVTYDRQAARNLYPPSRHEPVPVPQSQYSVIR
Ga0207644_115063722	3300025931	Switchgrass Rhizosphere	MRILMASVLVMSVLFLSGCATLQRNPAFGTLAGAGRYVEYDRQGARNLYPPSSSEPLPVPQSRYSVIR
Ga0207690_103761393	3300025932	Corn Rhizosphere	SLSAMLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR
Ga0207669_107143942	3300025937	Miscanthus Rhizosphere	MRILMASISLSAVLLLSGCASFQKYPAFGRLAGAGRIVTYDRQGSRNLVPPSHAEPVVVPQSQYSVIR
Ga0207704_119732462	3300025938	Miscanthus Rhizosphere	VCIAKEAAMRILMASVSLSAMLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR
Ga0207711_101210161	3300025941	Switchgrass Rhizosphere	CIAKEAAMRILMASVSLSAMLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR
Ga0207689_103865831	3300025942	Miscanthus Rhizosphere	VCGGRHPQCTVCIAKEAAMRILMASVSLSAMLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR
Ga0207689_105468831	3300025942	Miscanthus Rhizosphere	MRILMASISLSAMLLLSGCASFQKYPAFGRLAGAGRIVTYDRQGARNLLPPSHAEPVVVPQSQYSV
Ga0207689_107220821	3300025942	Miscanthus Rhizosphere	AKEASMRILMASVSLISVLFLSGCVTLQKSPAFGTLAGAGRYVTYDRQAARNLYPPSRHEPVPVPQSQYSVIR
Ga0207679_101518973	3300025945	Corn Rhizosphere	MRILMASISLSAMLLLSGCASVNTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSRYSVIR
Ga0207708_101585423	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MRILMASVSLSAVLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR
Ga0207648_117118371	3300026089	Miscanthus Rhizosphere	MRILMASVSLSAMLLLSGCASVNTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVV
Ga0207676_100317465	3300026095	Switchgrass Rhizosphere	MRILMASVSLVSGLFLSGCATLQKSDAFGTLAGAGRYVEYDRQGARNLYPPSSSEPLPVPQSRYSVIR
Ga0310886_102607473	3300031562	Soil	VCGGRHPQCTVCIAKEVAMRILMASVSLSAVLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR
Ga0310813_100359326	3300031716	Soil	MRWATAAPAMHNVTAKEAYMRILMASVSLVSGLFLSGCATLQKSDAFGTLAGAGRYVEYDRQGARNLYPPSSSEPLPVPQSRYSVIR
Ga0307469_104602552	3300031720	Hardwood Forest Soil	VGGTSDAPYIAKEAAMRILMASISLTAVLFLSGCATLQKYPAFGTLAGAGQFVTYDRQGARNLVPPSRSEPVVVPQSRYSVIR
Ga0307469_117373742	3300031720	Hardwood Forest Soil	MRILMASISLTAVLFVSGCATLQKYPAFGNAAGGRVVAFDRQGAKNLLPPSHSEPVVVPQSRYSVIR
Ga0307473_112675011	3300031820	Hardwood Forest Soil	MRILMASISLTAVLFLSGCATFQKYPAFGRLAGAGQIVTFDRQGARNLVPPSHAEPVVVP
Ga0310885_100774413	3300031943	Soil	LSAVLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR
Ga0310897_100661783	3300032003	Soil	EVAMRILMASVSLSAVLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR
Ga0310902_103887291	3300032012	Soil	KEAAMRILMASVSLSAMLFLSGCASFDTSFQKYPAFGRLAGAGRIVTFDRQAARNLVPPSHAEPVVVPQSQYSVIR
Ga0307471_1014599072	3300032180	Hardwood Forest Soil	MRILMASISLTAVLFLSGCASFDTSFQKYPAFGRLAGAGQIVTFDRQGARNLVPPSHAAPVVVPQSRYSVIR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088646

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


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