Metagenome / Metatranscriptome Family F088688

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088688
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	95 residues
Representative Sequence	MRLLNGFGCFLCGSLAVLLCAAPANPDRHVKAALAPLDAIAALAYSDAALAGPELRTALADPNTRDPVADPVIKVPLAEPEANVSPLEASDECVLSEECIDQYLW
Number of Associated Samples	86
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.07 %
% of genes near scaffold ends (potentially truncated)	95.41 %
% of genes from short scaffolds (< 2000 bps)	99.08 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.633 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (16.514 % of family members)
Environment Ontology (ENVO)	Unclassified (38.532 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.560 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 47.37% β-sheet: 0.00% Coil/Unstructured: 52.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF04392	ABC_sub_bind	0.92
PF08327	AHSA1	0.92
PF13180	PDZ_2	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.63 %
Unclassified	root	N/A	40.37 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.63 %
Unclassified	root	N/A	40.37 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.63 %
Unclassified	root	N/A	40.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.68 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	8.26 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.50 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.50 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.67 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.83 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.50 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	1.83 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.92 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.92 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.50 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.83 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	0.92 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.92 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_17363067	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10144248	All Organisms → cellular organisms → Bacteria → Proteobacteria	575	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1034834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	707	Open in IMG/M
3300000956\|JGI10216J12902_114067436	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300002568\|C688J35102_118524571	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300004114\|Ga0062593_102630606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	572	Open in IMG/M
3300004479\|Ga0062595_102019666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	558	Open in IMG/M
3300004480\|Ga0062592_101408856	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300004633\|Ga0066395_10186154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1078	Open in IMG/M
3300005166\|Ga0066674_10033236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2289	Open in IMG/M
3300005172\|Ga0066683_10728322	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300005172\|Ga0066683_10737467	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300005174\|Ga0066680_10890735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	528	Open in IMG/M
3300005178\|Ga0066688_10843933	Not Available	569	Open in IMG/M
3300005187\|Ga0066675_11279754	Not Available	541	Open in IMG/M
3300005329\|Ga0070683_101803666	Not Available	588	Open in IMG/M
3300005332\|Ga0066388_101303103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1252	Open in IMG/M
3300005332\|Ga0066388_101335312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1239	Open in IMG/M
3300005332\|Ga0066388_102141389	Not Available	1007	Open in IMG/M
3300005332\|Ga0066388_107548832	Not Available	545	Open in IMG/M
3300005363\|Ga0008090_10041730	Not Available	1535	Open in IMG/M
3300005434\|Ga0070709_10847714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	720	Open in IMG/M
3300005439\|Ga0070711_100838293	Not Available	782	Open in IMG/M
3300005451\|Ga0066681_10701031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	616	Open in IMG/M
3300005467\|Ga0070706_100403442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1273	Open in IMG/M
3300005553\|Ga0066695_10720753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	582	Open in IMG/M
3300005557\|Ga0066704_10908679	Not Available	544	Open in IMG/M
3300005558\|Ga0066698_10996588	Not Available	532	Open in IMG/M
3300005713\|Ga0066905_100445413	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300005713\|Ga0066905_101761511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	570	Open in IMG/M
3300005713\|Ga0066905_101893469	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300005713\|Ga0066905_102091301	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300005713\|Ga0066905_102255714	Not Available	508	Open in IMG/M
3300005764\|Ga0066903_105951707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	639	Open in IMG/M
3300005764\|Ga0066903_106050971	Not Available	633	Open in IMG/M
3300005764\|Ga0066903_106835938	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300005764\|Ga0066903_107298193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	571	Open in IMG/M
3300005764\|Ga0066903_108891319	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300005764\|Ga0066903_109032024	Not Available	504	Open in IMG/M
3300005937\|Ga0081455_10716305	All Organisms → cellular organisms → Bacteria → Proteobacteria	636	Open in IMG/M
3300006038\|Ga0075365_11193893	Not Available	535	Open in IMG/M
3300006050\|Ga0075028_101085030	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300006755\|Ga0079222_11315279	Not Available	660	Open in IMG/M
3300006796\|Ga0066665_10603950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	882	Open in IMG/M
3300006796\|Ga0066665_11227729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	573	Open in IMG/M
3300006914\|Ga0075436_100809569	All Organisms → cellular organisms → Bacteria → Proteobacteria	698	Open in IMG/M
3300006939\|Ga0081244_1524166	Not Available	550	Open in IMG/M
3300009012\|Ga0066710_101533090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1026	Open in IMG/M
3300009012\|Ga0066710_102707054	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300009012\|Ga0066710_103103937	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300009100\|Ga0075418_12269988	Not Available	592	Open in IMG/M
3300009792\|Ga0126374_11489579	Not Available	555	Open in IMG/M
3300010047\|Ga0126382_12304059	Not Available	521	Open in IMG/M
3300010326\|Ga0134065_10334653	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300010358\|Ga0126370_11999890	Not Available	566	Open in IMG/M
3300010358\|Ga0126370_12052433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	560	Open in IMG/M
3300010358\|Ga0126370_12241958	Not Available	539	Open in IMG/M
3300010361\|Ga0126378_13016952	Not Available	536	Open in IMG/M
3300010362\|Ga0126377_10976037	Not Available	913	Open in IMG/M
3300010362\|Ga0126377_12711710	Not Available	570	Open in IMG/M
3300010366\|Ga0126379_13724757	Not Available	511	Open in IMG/M
3300010376\|Ga0126381_102843553	Not Available	690	Open in IMG/M
3300010376\|Ga0126381_103891249	Not Available	582	Open in IMG/M
3300010398\|Ga0126383_11314222	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300010398\|Ga0126383_13321665	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300010868\|Ga0124844_1197911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	736	Open in IMG/M
3300012201\|Ga0137365_10767359	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300012202\|Ga0137363_11625592	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300012205\|Ga0137362_11082924	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300012211\|Ga0137377_11132861	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300012361\|Ga0137360_10258845	Not Available	1432	Open in IMG/M
3300012683\|Ga0137398_10606587	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300012918\|Ga0137396_10558100	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300012971\|Ga0126369_11862208	All Organisms → cellular organisms → Bacteria → Proteobacteria	690	Open in IMG/M
3300012984\|Ga0164309_11954441	Not Available	503	Open in IMG/M
3300012985\|Ga0164308_11608103	Not Available	600	Open in IMG/M
3300012987\|Ga0164307_11234593	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300013296\|Ga0157374_12952338	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300015359\|Ga0134085_10481862	Not Available	565	Open in IMG/M
3300016294\|Ga0182041_11836978	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300016371\|Ga0182034_10454112	All Organisms → cellular organisms → Bacteria	1061	Open in IMG/M
3300016387\|Ga0182040_11276777	Not Available	619	Open in IMG/M
3300017654\|Ga0134069_1368809	Not Available	517	Open in IMG/M
3300018431\|Ga0066655_11094727	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300018482\|Ga0066669_11626461	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300021372\|Ga0213877_10254084	Not Available	585	Open in IMG/M
3300021405\|Ga0210387_10864244	Not Available	797	Open in IMG/M
3300021560\|Ga0126371_10288112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1766	Open in IMG/M
3300021560\|Ga0126371_13168174	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300022530\|Ga0242658_1041131	Not Available	941	Open in IMG/M
3300022530\|Ga0242658_1123501	Not Available	643	Open in IMG/M
3300022720\|Ga0242672_1046197	Not Available	718	Open in IMG/M
3300025916\|Ga0207663_10572779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	885	Open in IMG/M
3300026331\|Ga0209267_1113728	Not Available	1144	Open in IMG/M
3300026557\|Ga0179587_10955560	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300027874\|Ga0209465_10076397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1628	Open in IMG/M
3300027903\|Ga0209488_10138656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1836	Open in IMG/M
3300031058\|Ga0308189_10189689	Not Available	737	Open in IMG/M
3300031546\|Ga0318538_10323778	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300031751\|Ga0318494_10756180	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300031797\|Ga0318550_10591101	Not Available	533	Open in IMG/M
3300031860\|Ga0318495_10523735	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300031942\|Ga0310916_10838872	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300031954\|Ga0306926_10654919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1277	Open in IMG/M
3300032051\|Ga0318532_10037998	Not Available	1628	Open in IMG/M
3300032060\|Ga0318505_10219612	Not Available	892	Open in IMG/M
3300032065\|Ga0318513_10260329	Not Available	841	Open in IMG/M
3300032174\|Ga0307470_10740423	Not Available	754	Open in IMG/M
3300032261\|Ga0306920_102769340	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.41%
Host-Associated	Host-Associated	4.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.50%
Plants	Host-Associated → Plants	4.59%
Aquatic	Environmental → Aquatic	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%
Sediment	Environmental → Aquatic → Sediment	0.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.92%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.48%
Loam	Environmental → Terrestrial → Soil → Loam	22.02%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.92%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.28%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	18.35%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.51%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.59%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.75%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	16.51%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.01%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.26%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.83%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.92%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.92%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006939	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A10 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022720	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_01211440	2088090014	Soil	MRLLNGFGCFLCGSLAFLWIVPANPDVHVKAALAPLNAIAALARSDAALAGLELRTALADPDGRATLADPVXKCRLPSQRQR
AF_2010_repII_A1DRAFT_101442481	3300000597	Forest Soil	MRLVSMFGCFVCGSLAVLLCAAPANPNRHVKAALARMDAIAALAHSDAALPGPELGTALADARPTLADPVIKIPLVEPE
AP72_2010_repI_A100DRAFT_10348342	3300000837	Forest Soil	MRLFNGFGCFLCGSLAVLLCAAPANPDRQVKAALAPIDAIAAFAHSDVALADPELRTALTDPNTRAAVADPVIKVPLAEPEANE
JGI10216J12902_1140674361	3300000956	Soil	MRVLSGFGGFICGSLAVLLCAAPENPDRHLKAALARMDAMAAFAYSDAALARPALTTALADPSTQPAVTEQVLKVPLAEADVNMRPLEAVDECVLTEECIDQYLWS
C688J35102_1185245711	3300002568	Soil	MKLLNGFGCFLCGSLGVLLWAAPANPDRHVKAALALLDAIAALAHSDAALAGPELRTALADPDTRATLADPVLKAPLAEPEVNISPLKTSDTCVLSEECIDQYL
Ga0062593_1026306062	3300004114	Soil	MRLLNGFGCYLCGSLAVFLCAAPANSDRHVKAALAPLGAIAALAHADAALADPEFRTALTDPDPRATLADPVIKIRP
Ga0062595_1020196662	3300004479	Soil	MRLLNGFGCFLCGSLAFLWIVPANPDVHVKAALAPLNAIAALARSDAALAGLELRTALADPDGRATLADPVIKVPPAEP
Ga0062592_1014088561	3300004480	Soil	MRLLNGFGCYLCGSLAVFLCAAPANSDRHVKAALAPLGAIAALAHADAALADPEFRTALTDPDPRATLADPVIKIRPAEPDVNVSPLEPSDTCVLSEECIDQYLW
Ga0066395_101861542	3300004633	Tropical Forest Soil	MRLINGFGCFLWGSVAVLLCAPAANPDRHVKAALAPLDTIAALAHSDAAAAVADPVIKVPLAEPEVNVSPLEASDACVLSEACI
Ga0066674_100332364	3300005166	Soil	MRLLNGFGCFLCGSLALLWIAPANPDRHAKAALGPLDAIAALAHSDAALAGPELRTALADPDARGTLADPVIKVPLAEPEVNVSPLEASDECVLGEECIDQYLWSVYERARKVDTI
Ga0066683_107283221	3300005172	Soil	MGANMRLISGFGCFVCGSLAVLLCVAPANPDRHVNAALARMDAIAALAHSDAALAGPELRTALADPNTRAAVADPVIKVPLAEPEVNVSPLEVSDECVLSEECIDQY
Ga0066683_107374671	3300005172	Soil	MRLLSGFGCFVCGSLAVLLCVAPANPDRRVNAALARMDAIAALAHSDAALAGPELRTALADPNIRAAVADPVIKVPLAEPEVNVSPLEVSDECVLSEECID
Ga0066680_108907351	3300005174	Soil	MVRDETGIEKWGANMRLVSGFGCFLWGSLAVLLCAVPANPDRHVKAALAPLDAIAALAHSNAALATPELRTALADPDARADLADAVIQVPLVEPEVNVSPLEASDECVLSEECIDQYLWSVYERARKVD
Ga0066688_108439332	3300005178	Soil	MRLLSGFGCFVCGSLAVLLCVAPANPDRRVNAALARMDAIAALAHSDAALAGPELRTALADPNIRAAVADPVIKVPLAEPEVNV
Ga0066675_112797541	3300005187	Soil	MRLLNGFGCFLCGSLALLWIAPANPDRHAKAALGPLDAIAALAHSDAALAGPELRTALADPDARGTLADPVIKVPLAEPEVNVSPLEASDECVL
Ga0070683_1018036661	3300005329	Corn Rhizosphere	MRLLNGFGCYLCGSLAVFLCAAPANSDRHVKAALAPLGAIAALAHADAALADPEFRTALTDPDPRATLADPVIKIRPAEPDVNVSPLEPSDTCVLSEECI
Ga0066388_1013031031	3300005332	Tropical Forest Soil	MRLVGGFGCFVCGSLAVLLCAAPANPDRHVKAALAPINAIVALAHSDAALASPELRTALAEPDARATLFGPAIKVPLVEPEVNVSPLEASDECVLSEECIDQYLWSV
Ga0066388_1013353121	3300005332	Tropical Forest Soil	MKLVGVVGCLICGSLAVLVCAAPANPDRQVKAALAPIDAIASLAHSDAALASPELETALGDPDARAGVTDPAMKVTLVEPEVNV
Ga0066388_1021413891	3300005332	Tropical Forest Soil	MRLLNGFGCFLCGSLAFLWIAPANPGRHVKAALAPLEGIAALARSDAALAGPELKTALADPDARATLADPVIKVPLAEPEAKVSPLEASDECVLT
Ga0066388_1075488322	3300005332	Tropical Forest Soil	MRLLNGFGCFLCGSLAVLLCAAPANPNRQVKAALAPIDAIAAFAHSDVALAGPELRTALADPNTRDPVADPVIKVPL
Ga0008090_100417301	3300005363	Tropical Rainforest Soil	MRLFNGFGCFVCGSLAILLCVAPANPNRRVNAALARIDATTALAHTDAALAGPELRTALADPNTRAAVADPDIKVPLAEPEVNVSPLEASDECVL
Ga0070709_108477142	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MGANMRVLSGFGCFICGSLAVLLCAAPANPDRHLKAALARMDAMAAFAYSDAALARPELTTAFADPNTQPAVTEQVLKVPLAEPDVNMRPLEAVDECVLTEK
Ga0070711_1008382931	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRVLSGFGCFICGSLAVLLCAAPANPDRHLKAALARMDAMAAFAYSDAALARPELTTAFADPNTQPAVTEQVLKVPLAEPDVNMRP
Ga0066681_107010311	3300005451	Soil	MRLLSGFGCFVCGSLAVLLCVAPANPDRRVNAALARMDAIAALAHSDAALAGPELRTALADPNTRAAVADPVIKVPLAEPEVNVSPLEVSDECVLSEECIDQYLWSVYERAR
Ga0070706_1004034421	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRLLNGFGCFLCGSLAVLLCAPANPDRQVKAALAPIDAIAAFAHSDVALASPELRTALADPNTRAAVADPVIKVPLAEPEV
Ga0066695_107207532	3300005553	Soil	MRLLNGFGCFLCGSLALLWIAPANPDRHAKAALGPLDAIAALAHSDAALAGPELRTALADPDARGTLADPVIKVPLAEPEVNVSPLEASDECVLTEECIDQYLW
Ga0066704_109086792	3300005557	Soil	MRLISGFGCFVCGSLAVLLCVAPANPDRHVNAALARMDAIAALAHSDAALAGPELRTALADPNTRAAVADPVIKVPLAEPEVN
Ga0066698_109965881	3300005558	Soil	MRLLNGFGCFLCGSLAVLLCVAPANPDRHVNAALARMDAIAALAHSDAALAGPELRTALADPNTRAAVADPVIKVPLAEPEVNVSPLE
Ga0066905_1004454133	3300005713	Tropical Forest Soil	MGTGKWANMRLLNGFGCLLCASLAVVLCGRANPDRHVKAALAPLDAIAALAHLDAARAGGELITAFPDPDARATLADPAIKVPLAKPEANVSPLEASDECVLSEECIDQYLWSVYERA
Ga0066905_1017615111	3300005713	Tropical Forest Soil	MRLLNGFGCFLCGSLAVLLCAPANPDRQVKAALAPIDAIAAFAHSDVALASPKLRTALADPNTRNPVADPVIKVPLAEPEVNVSPLEASDECVLSEECIDQYLWSVYE
Ga0066905_1018934692	3300005713	Tropical Forest Soil	MRVLNGFGCYLFGSLAILLCAAPANPNRHFKAALAPINAIAAFAPADAARAGGELRTALANPNTKATVADPVIKVPLAEPEANESPLEASDECALSEECIDQYLWSVYERAPKVDTI
Ga0066905_1020913011	3300005713	Tropical Forest Soil	MRLFNGFGCFLCGSLALLCVAPANPDRHVKAALTPLGPIAALAHSDAAVAGPELRTALAEPDARAALADPVIKVPLAAPEVNVSPLEASDECVLTEECIDQYLWSVYERA
Ga0066905_1022557142	3300005713	Tropical Forest Soil	MRLLNGFGCFVCGSLAVLLCAARENPDRHVGAALARMDAITELAHSDAAAAVADPVIKVPLAEPEVNVSPLEASDECVLSE
Ga0066903_1059517071	3300005764	Tropical Forest Soil	MRLLSRFGCLVCGSLAVLLCSAPANPDQHLSAAVARTDAATTLVQSDVGLAGAELIIALDDPNAAAAVADPVIKVPLAGPEVNVSPLGASDECVLSEECIDQYLWSVYERA
Ga0066903_1060509711	3300005764	Tropical Forest Soil	MRLVSGFGCFVCGSLAVLLCAAPANPDQHVNAALVRTLAHTDVALVVPELRTAVADPNTRAAVADPVIKVPLAEPEVNVSPLEASDECVLSEEC
Ga0066903_1068359382	3300005764	Tropical Forest Soil	MRLFNGFGCFVCGSLAILLCVAPANPNRRVNAALARIDATTALAHSDAAALAGPELRVTRADPNTRAAVADPVIKVPLAEPEVNVSPLEASDECV
Ga0066903_1072981932	3300005764	Tropical Forest Soil	MRLLNGFGCFLCGSLAVLLCAARANPDRHVNATLARMDAIAALAHSDAAAAVADPVIKVPLAEPEVNVSPLEASDACVLSEACIDQYLWSVYD
Ga0066903_1088913192	3300005764	Tropical Forest Soil	MRLLNGFGCFLCGSLAVLLCAPANPDRQVKAALAPIDAIAAFAHSDAALAGGELRNAFSDPDARAILADPAIKVPLAEPEVNVSPLEASDECVLSEECIDQ
Ga0066903_1090320241	3300005764	Tropical Forest Soil	VRLINGFGCFLWGSLAVLLCAPHADPDRHVKAALAPLDTIAALAHSDAALGTPELRTALADSDGATLADPVIKVPLVEPEVSVSPLEAADEC
Ga0081455_107163051	3300005937	Tabebuia Heterophylla Rhizosphere	MRLVSGFGCFVCGSLAVLLCAGPANPDRHVKAALAPINAIVALAHSDAALATPELRTARADPVARADLPDAVIKVPLLEPEANVSPLEASDECVLSEEC
Ga0075365_111938932	3300006038	Populus Endosphere	MRLLNGFGCLLCGSLAVLLCARANPDRLVKAALAPLDAMAALAHSDTARAGAELRTALPDLDARATLADPAIKVPLAEPEANV
Ga0075028_1010850301	3300006050	Watersheds	MRLLNGFGCFLCGSLAVLLCAAPANPDRQVKAALAPIDAIAAFAHSDVALASPELRTALADPNTRDPVADPVIKVPLAEPEANVSPLEASDECVLSEECIDQYLWSVYERA
Ga0079222_113152791	3300006755	Agricultural Soil	MGSKHRLFNGFGCFVCGSLAVLLCVAPAKHDGHVKAAFAPLDAIASLTHSDAPLAGPELRTALADPDPRATLVDPVIKVPL
Ga0066665_106039501	3300006796	Soil	MRLLNGFGCFLCGSLALLWIAPANPDRHAKAALGPLDAIAALAHSDAALAGPKLRTALEDPDARAALADPIIKVPLAEPEVNVSPLEASDE
Ga0066665_112277292	3300006796	Soil	MRLLSGFGCFVCGSLAVLLCVAPANPDRPVNAALARMDAIAALAHSDAALAGPELRTALADPNTRAAVADPVIKVPLAEPEVNV
Ga0075436_1008095692	3300006914	Populus Rhizosphere	MRLLNRFGCLLCGSLAVLLCARANPDSLDAIAALAHSDAARAGAELRPAFPNPDASATLADPAMKVPLAQPEVNVNALETSDACVLTEECI
Ga0081244_15241661	3300006939	Tropical Rainforest Soil	MRLLNGFGCFLCGSLAVLLCVGPANRDRHVKAALASLDAIAAFAHSDAALASPELRTALTDPNTRAAVADPVIKVPLAEP
Ga0066710_1015330901	3300009012	Grasslands Soil	MVRDETGIEKWGANMRLVSGFGCFLWGSLAVLLCAVPANPDRHVKAALAPLDAIAALAHSNAALATPELRTALADPDARADLADAVIQVPLVEPEVNVSPLEASDECVLGEECIDQYLWSVYERVR
Ga0066710_1027070541	3300009012	Grasslands Soil	MRLISGFGCFLWGSLAVLLCAGPAKPDRHVKAALAPLDAIAALAHSDAALAGPELRTALAEPNIRAAVADPVIKVPLAEPEVNVRRLEVSDECVLSEECIDQYLWSVY
Ga0066710_1031039372	3300009012	Grasslands Soil	MRLLSGFGCFVCGSLAVLLCVAPANPDRRVNAALARMDAIAALAHSDAALAGPELRTALADPNIRAAVADPVIKVPLAEPEVNVRRLEVSDECVLSEECIDQYLWSVY
Ga0075418_122699881	3300009100	Populus Rhizosphere	MRLLNGFGCYLCGSLAVFLCAAPVNPDRHVKAALAPLGAIAALAHADAALSGPELRTALTDPDTRATLADPVIKVRPAEPEVNVSPLEAS
Ga0126374_114895791	3300009792	Tropical Forest Soil	LAFLWIAPANPGRHVKAALAPLEGIAALARSDAALAGRELRTALADPDARATLADPVIKVPLAEPEVNVSPLEASDE
Ga0126382_123040591	3300010047	Tropical Forest Soil	MRLLNGFGCFLCGSLAVLLCAAPANPDRQVKAAIAPIDAIAAFAHSDIALASPELRTALADPNARDPVADPVIKVPLAE
Ga0134065_103346531	3300010326	Grasslands Soil	LLWVAPANPDRHVKAALAPLDAIAALAHSNAALASPELRTALADPDARATLADPVIKVPLAELEANVSPLEASDECVLTEECIDQY
Ga0126370_119998901	3300010358	Tropical Forest Soil	MRLVSGFGCFLWGSLAVLLCAVPANPDRHVKAALAPVDAITALAHSDAALVSPELRTALADPDAMATLADPVIKIPLVEPKVNVSASSHSSATSRT*
Ga0126370_120524331	3300010358	Tropical Forest Soil	MRLVNGFGCFVCGSLAVLLCAAPANPDRHVKAALAPLDAIAALAHSDAALASPELRTARADPDARTTLADPVIKVPFVEPEVNVSP
Ga0126370_122419581	3300010358	Tropical Forest Soil	VLLCVAPAKRDRHVKAALAPLDAIAALTHSDAALAGPELRTALADPGARATVVDPVIRVPLAEPEANVSPLEASDE
Ga0126378_130169521	3300010361	Tropical Forest Soil	MRVLNGFGCYLCGSLAILLCAAPANPDRHVKAALAPIDAIAAFAHSDVALASTELRTALAGPNTRDPVADPVIKVPLAEPEVNVSPLGASDECVLSEERSRKRG*
Ga0126377_109760371	3300010362	Tropical Forest Soil	MGTVIRGINVRLINGFGCFLWGSLAVLLCAPHADPDRHVKAALAPLDTIAALAHSDAALATPELRTALADSDGATLADPVIKVPLVEPEVSVSPLEAADECVLTED
Ga0126377_127117102	3300010362	Tropical Forest Soil	MRLISGFGCFLWGSLAVLLCAGPANPDRHVKATLAPVDAIAALARSDAALASPELRTALADPDAMATLADPVIKVPLAEPEVNVSPLEASDECVL
Ga0126379_137247572	3300010366	Tropical Forest Soil	MGSKYRLFNGFGCFLCCSLAVLLCVAPAKRDRHVKAALAPLDAIAALAHSDAALAGPELRTALADPGARATVVDPVIRVPLAEPEAK
Ga0126381_1028435531	3300010376	Tropical Forest Soil	MRLLSGFGCFVCGSLAVLLCVAPANPNRHVNAALARIDAIAALAHSDAAALAGPELRVTRADPNTRDPVADPVIKVPLAEPEVNVSPLEASDECV
Ga0126381_1038912492	3300010376	Tropical Forest Soil	MRFLNGFGCFLCGSLAFLWIAPANPDRHVKAALAPIDAIAAFAHSDVALASPKLRTALADPNTRNPVADPVIKVPLAEPEVNVSPL
Ga0126383_113142221	3300010398	Tropical Forest Soil	ANMRLLNGFGCFLCGSLAVLLCAPANPDRQLVKAALAPIDVIAAFADVALASPELRTALADPNTGDPVADPVIKVPLAEPEVNVSPLGASDECVLSEERSRKSG*
Ga0126383_133216651	3300010398	Tropical Forest Soil	LAFLWIAPANPDRHVKAALAPIDAIAAFAHSDVALASPKLRTALADPNTRNPVADPVIKVPLAEPEVNVSPLEASDECVLSEECIDQYLWSVYE
Ga0124844_11979111	3300010868	Tropical Forest Soil	MRLVSGVGCFVCGGLAVLLCAAPANPDRHVKAALAPINAIIALAHSDVALASPELRTALADPDARTTLADPAIKIPLVESQR*
Ga0137365_107673592	3300012201	Vadose Zone Soil	LALLWIAPANPDRHVKAALAPLDAIAALAHSDAAVAGPELRTALADPDARATLADPVIKVPLAEPEVNVTPLEAADECLAAQDCIDQYLWSVYERARK
Ga0137363_116255922	3300012202	Vadose Zone Soil	LAVLLCARANPDQHVKADLAPLGAIAALAHSDAARAGGELKTAFSDPDARATLADPAIKVPLAEPEANVSPLEASDECVLTEECIDQYLW
Ga0137362_110829241	3300012205	Vadose Zone Soil	LAVLHCVAPANPDRHVKAALAPLDAIAALAYSDAALAGPELRTALADPDARATLADPVIKVPLAEPEVNVSPLEAADECVLSEECIDQYLWS
Ga0137377_111328612	3300012211	Vadose Zone Soil	LAVLLCVAPANPDRHVKAALGPLDAIAALSHSDAALAGPELRTALADPNTRAAVADPVIKVPLAEPEVNVSPLEASDECVLSEECIDQYLWSVYE
Ga0137360_102588451	3300012361	Vadose Zone Soil	LLCVAPANPDVHVKAALAPLDAIAALAHSDAALAGQELRTALADPDARATPADPVIKVPLAEPEVNVSPLEASDECVLTEEC
Ga0137398_106065872	3300012683	Vadose Zone Soil	MRLLNGFGCFLCGSLAVLLCVAPANPDRHVKAALAPLDAIAALAHSDAALAGPELRTALAGPNTRDPVADPVIKVPLAEPEANVSPLEASDECVLSEECIDQYLW
Ga0137396_105581001	3300012918	Vadose Zone Soil	MRLLNGFGCFLCGSLAVLLCAAPANPDRHVKAALAPLDAIAALAYSDAALAGPELRTALADPNTRDPVADPVIKVPLAEPEANVSPLEASDECVLSEECIDQYLW
Ga0126369_118622081	3300012971	Tropical Forest Soil	MRLINGFGCFLGGSLAVLLCAPTANPDRHVKAALAPLDTIAALAHSDAALATPELRTALADSDGATLADPVIKVPLVEPGVSVSPLEAADECVLTEDCIDQYLWSVY
Ga0164309_119544411	3300012984	Soil	MKLFNGFGCFLCASLAVMLCVAPATRDGHVKAALAPLDAIAALAHSDAARDGRELRTALTDPDARATPADPVMKVPLAEPEANASP
Ga0164308_116081031	3300012985	Soil	MRLLNGFGCFLCGSLAFLWIAPANPDVHVKAALAPLNAIAALARSDAALAGPELRTALADPDGRATLADPVIKVPPAGPEAKVSPLEASD
Ga0164307_112345931	3300012987	Soil	LAVLLCAPANPDRQVKAALAPIDAIAAFAHSDVTLDSPELKTALADPNTRDPVADPVIKVPLAEPEVNVSPLEASDECVMSEECIDQYLW
Ga0157374_129523381	3300013296	Miscanthus Rhizosphere	MRLLNGFGCFLCGSLAVLLCAAPANPGRHVKAALAPLDAIAALAHSDAALAGPELRTALADPDTRATLAHPVIKVPLAEPEVNVSPLEASDTCVLSEECIDQYL
Ga0134085_104818621	3300015359	Grasslands Soil	MVRDETGIEKWGANMRLVSGFGCFLWGSLAVLLCAVPANPDRHVKAALAPLDAIAALAHSNAALATPELRTALADPDARADLADAVIQVPLVEPEVNVSPL
Ga0182041_118369782	3300016294	Soil	MRLLNGFGCFLCGSLAVLLCAARANPDRHVDAALARMDAIAARAHLDAAAAVADPVTKVPLAEPEVNVSPLEASDECVLSEACIDQYLWSVYDR
Ga0182034_104541122	3300016371	Soil	MRLLSGFGCFVCGSLAVLLCAAPANPDRHVNAALARMDAIAALVHSDAALAGPELRTALADPNSRAAVADPVIKAPLAEPEVNVSPLEASDECVLSEECIDQYLW
Ga0182040_112767771	3300016387	Soil	MRLLSGFGCFVCGSLAVLLCAGPVNPDRHVNAALARMDAIAALAHSDAALAGPELRTTAVADPVIKAPLAEPEVNVSPLEAS
Ga0134069_13688091	3300017654	Grasslands Soil	MRLLSGFGCFVCGSLAVLLCVAPANPDRRVNAALARMDAIAALAHSDAALAGPELRTALADPNIRAAVADPVIKVPLAEPEVNVRRLEVSDECVLSEEC
Ga0066655_110947271	3300018431	Grasslands Soil	MVRDETGIEKWGANMRLVSGFGCFLWGSLAVLLCAVPANPDRHVKAALAPLDAIAALAHSDAALASPELRTALADPDARATLADPVIKVPLAEPEVNVTPLEAADECLAAQDCIDQYLWSVYERARK
Ga0066669_116264611	3300018482	Grasslands Soil	MRLISGFGCFVCGSLAVLLYVAPAKPDRRVNAALARMDAIAALAHSDAALAGPELRTALADPNTTAAVADPVIKVPLAEPEVNVSPLEASDECVLSEECIDQYLWSVYERA
Ga0213877_102540841	3300021372	Bulk Soil	MRLFNGFGCFLCGSLAVLLCAAPANPDRPVKAALAPMDAIAAFAPSDATLAGPELRTALADPNTRAAGADPVIKVPLAEPEINVSPLEASDECVLSE
Ga0210387_108642441	3300021405	Soil	MRLLNGFGCFLCGSLAVLLCAPASPDRQVKAALAPIDAIAAFAHSDVALASPELRTALADPNTRAAVADPVIKVPLAEPEVNVNPLEASDEC
Ga0126371_102881121	3300021560	Tropical Forest Soil	MRLLNGFGCFLCGSLAVLLCVGPANRDRHVKAALASLDAIAAFAHSDAALASPELRTALTDPNTRAAVADPVIKVPLAEREVNVSPLEASDECVLSEECIDQYLWSV
Ga0126371_131681741	3300021560	Tropical Forest Soil	MRLLNGFGCFLCGSLAVLLCAARANPDRHVNATLARMDAIAALAHSDAAAAVADPVIKVPLAEPEVNVSPLEASDACVLSEACIDQY
Ga0242658_10411311	3300022530	Soil	MKLFNGFGCFLCASLAVMLYVVPATRDAHVKAALAPLDTIAALAHSDAAHAGRELRTALTDPDARATPADPVMKV
Ga0242658_11235011	3300022530	Soil	MRLLNGFGCFLCGSLAVLLCAAPANPDRQVKAALAPIDAKAAFAHSDVALASPELTTALADPNTRDPVADPVIKVPLAE
Ga0242672_10461971	3300022720	Soil	MKLFNGFGCFLCASLAVMLYVAPATRDAHVKAALAPLDTIAALAHSDAAHAGRELRTALTDPDARATPADPVMKVPLAEPEANASPR
Ga0207663_105727792	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MGANMRVLSGFGCFICGSLAVLLCAAPANPDRHLKAALARMDAMAAFAYSDAALARPELTTAFADPNTQPAVTEQVLKVPLAEPDVNMRPL
Ga0209267_11137281	3300026331	Soil	MRLISGFGCFVCGSLAVLLCVAPANPDRHVNAALARMDAIAALAHSDAALAGPELRTALADPNTRAAVADPVIKVPLA
Ga0179587_109555601	3300026557	Vadose Zone Soil	MRLVSGFGCFVCGSLAVLLCAAPADPDRHVNAALARMDAIAALAHSDAALAGPELRTALADPNTRAAVTDPVIKVPLAEPEVNVSPLEASDECVLSEECIDQYLWSVYERA
Ga0209465_100763971	3300027874	Tropical Forest Soil	MRLVSGFGCFACGSLAVLLCAAPANPDQHVNAALARMDAIAALAHSDVALVGPELRTALADPSTRASVADPVTNVPLAEPEVNVSPLEASDECVLSEECIDQYLWSVYQRARKV
Ga0209488_101386561	3300027903	Vadose Zone Soil	MRLLSGFGCFVCGSLAVLLCVAPTNPDRHVNAALARMDAIAALAHSDAALAGPELRTALADPNTRAAVADPVIKVPL
Ga0308189_101896891	3300031058	Soil	MKLFNGFGCFLCASLAVVLYVAPATRDGHVKAALAPLDTIAALAHSDTARAGRELRTALTDPDARATPADPVIKVPLAEPEANVSPREASDEC
Ga0318538_103237782	3300031546	Soil	MRLLNGFGCFLCGSLAVLLCAARANPDRHVDAALARMDAIAARAHLDAAAAVADPVTKVPLAEPEVNVSPLEASDECVLSEACIDQYLWSVYD
Ga0318494_107561801	3300031751	Soil	MRLLNGFGCFLCGSLAVLLCAAPANPDRQVKAALAPIDAIAAFAHSDVALASPELRTALTDPKTRAAVADPVIKVLLAEPEVNVSPLEASDECVLSEECIDQYLWSVYE
Ga0318550_105911011	3300031797	Soil	MRLLNGFGCFLCGSLAVLLCAARANPDRHVDAALARMDAIAARAHLDAAAAVADPVTKVPLAEPEVKVSPLEASDECVLSEA
Ga0318495_105237351	3300031860	Soil	MRLLNGFGCFLCGSLAVLLCAARANPDRHVDAALARMDAIAARAHLDAAAAVADPVTKVPLAEPEVNVSPLEASDECVLSEACIDQYLWSVYE
Ga0310916_108388721	3300031942	Soil	MRLLNGFGCFLCGSLAVLFCAPANPDRQVKAALAPIDAIAAFAHSDVALASPELRTALADPNTRDPVADPVIKVPLAEPEVNVSPLEASDECVL
Ga0306926_106549193	3300031954	Soil	MRLLSGFGCFVCGSLAVLLCAGPVNSDRHVNAALARMDAIAALAHSDAALAGPELRTTAVADPVIKAPLAEPEVNVSPLEASAECVLSEEVHGPISLVGVRTRA
Ga0318532_100379983	3300032051	Soil	MRLISGFGCFLWGSLAVLLCAGPANPDQHVKGAVASQDAIAALASSNAALAGPELKTALADPDAVADLPDAVIKVPLLEPEPLEAPDECVLTEDCIDQY
Ga0318505_102196121	3300032060	Soil	MRLLNGFGCFLCGSLAVLFCAPANPDRQVKAALAPIDAIAAFAHSDVALASPELRTALADPNTRDPVADPVIKVPLAEPEVNVSPLE
Ga0318513_102603291	3300032065	Soil	MRLFNGFGCFLCGSLAVLLCAAPANPDRQLKAALAPMDAIAAFAHSDVALAGPELRTALADPNTRDPVADPVIKVPLAEPEVNVSPLEASDECVLSEECI
Ga0307470_107404231	3300032174	Hardwood Forest Soil	MKLFNGFGCFLCASLAVMLYVAPATRDAHVKAALAPLDTIAALAHSDAAHAGRELRTALTDPDARATPADPVMKVPLAEPEANVSPREASDDCVLTEEC
Ga0306920_1027693401	3300032261	Soil	MRLVSGFGCFLWGSLAVLLCALPANPDRHVKADLAPVDAIAALAHSDAVLATPELRSALSDLDASATLADPVIKVPLVEPEVNVSPLEASDKCVLSEECIDQYLWSVYERA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088688

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences