Metagenome Family F088697

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F088697
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	55 residues
Representative Sequence	LTGDVMMPAGGIVVQPPGDTPLRAVVVNGEPTTRFTGTQATIEELPAKVRLIR
Number of Associated Samples	96
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.83 %
% of genes near scaffold ends (potentially truncated)	97.25 %
% of genes from short scaffolds (< 2000 bps)	89.91 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (38.532 % of family members)
Environment Ontology (ENVO)	Unclassified (62.385 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (75.229 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 24.69% Coil/Unstructured: 75.31%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF06472	ABC_membrane_2	68.81
PF06165	Glyco_transf_36	17.43
PF17167	Glyco_hydro_36	1.83
PF01594	AI-2E_transport	0.92
PF06204	Obsolete Pfam Family	0.92
PF01551	Peptidase_M23	0.92
PF03713	DUF305	0.92
PF00005	ABC_tran	0.92
PF06205	Obsolete Pfam Family	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3459	Cellobiose phosphorylase	Carbohydrate transport and metabolism [G]	17.43
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.92
COG3544	Uncharacterized conserved protein, DUF305 family	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	96.33 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	53.21 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	40.37 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.83 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	41.28 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	40.37 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.83 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	41.28 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	40.37 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	1.83 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	40.37 %
Methylocaldum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	14.68 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.83 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	40.37 %
Methylocaldum szegediense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum → Methylocaldum szegediense	2.75 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.83 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.92 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0611445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	505	Open in IMG/M
3300002562\|JGI25382J37095_10076579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1236	Open in IMG/M
3300002908\|JGI25382J43887_10490993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum → Methylocaldum szegediense	520	Open in IMG/M
3300002912\|JGI25386J43895_10087036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	826	Open in IMG/M
3300004633\|Ga0066395_10421334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	756	Open in IMG/M
3300005166\|Ga0066674_10484293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	560	Open in IMG/M
3300005171\|Ga0066677_10635423	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	603	Open in IMG/M
3300005172\|Ga0066683_10270985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1054	Open in IMG/M
3300005177\|Ga0066690_10815593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	605	Open in IMG/M
3300005181\|Ga0066678_10140819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1500	Open in IMG/M
3300005331\|Ga0070670_101940035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	542	Open in IMG/M
3300005446\|Ga0066686_10322603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1052	Open in IMG/M
3300005446\|Ga0066686_10859985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	599	Open in IMG/M
3300005446\|Ga0066686_11121000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	505	Open in IMG/M
3300005447\|Ga0066689_10431004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	826	Open in IMG/M
3300005451\|Ga0066681_10629645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	658	Open in IMG/M
3300005468\|Ga0070707_100181102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2054	Open in IMG/M
3300005471\|Ga0070698_100869039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	847	Open in IMG/M
3300005536\|Ga0070697_100305186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1369	Open in IMG/M
3300005536\|Ga0070697_100650046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	929	Open in IMG/M
3300005553\|Ga0066695_10695533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	597	Open in IMG/M
3300005555\|Ga0066692_10696116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	630	Open in IMG/M
3300005556\|Ga0066707_10325237	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1006	Open in IMG/M
3300005557\|Ga0066704_10024988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3577	Open in IMG/M
3300005557\|Ga0066704_10264716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1166	Open in IMG/M
3300005558\|Ga0066698_10348537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	1023	Open in IMG/M
3300005569\|Ga0066705_10561906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	706	Open in IMG/M
3300005587\|Ga0066654_10492780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	672	Open in IMG/M
3300005840\|Ga0068870_10931107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	616	Open in IMG/M
3300006031\|Ga0066651_10141006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1256	Open in IMG/M
3300006034\|Ga0066656_10653262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	678	Open in IMG/M
3300006755\|Ga0079222_10352617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	995	Open in IMG/M
3300006791\|Ga0066653_10294123	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	820	Open in IMG/M
3300006797\|Ga0066659_11440714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	576	Open in IMG/M
3300006800\|Ga0066660_11529565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	526	Open in IMG/M
3300009012\|Ga0066710_103565498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	587	Open in IMG/M
3300009094\|Ga0111539_11212113	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	877	Open in IMG/M
3300009137\|Ga0066709_102693413	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	663	Open in IMG/M
3300010320\|Ga0134109_10504687	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	500	Open in IMG/M
3300010321\|Ga0134067_10107858	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	959	Open in IMG/M
3300010322\|Ga0134084_10004106	All Organisms → cellular organisms → Bacteria	3348	Open in IMG/M
3300010326\|Ga0134065_10338766	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	587	Open in IMG/M
3300010329\|Ga0134111_10205212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	797	Open in IMG/M
3300010336\|Ga0134071_10053496	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1837	Open in IMG/M
3300010337\|Ga0134062_10670257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	542	Open in IMG/M
3300010358\|Ga0126370_11592524	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	625	Open in IMG/M
3300010362\|Ga0126377_10225885	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1809	Open in IMG/M
3300010362\|Ga0126377_13619716	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	500	Open in IMG/M
3300010364\|Ga0134066_10053589	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1044	Open in IMG/M
3300010366\|Ga0126379_10088212	All Organisms → cellular organisms → Bacteria → Proteobacteria	2715	Open in IMG/M
3300010376\|Ga0126381_102193089	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	794	Open in IMG/M
3300010398\|Ga0126383_12343439	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	619	Open in IMG/M
3300011269\|Ga0137392_10152534	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1865	Open in IMG/M
3300012202\|Ga0137363_11636607	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	536	Open in IMG/M
3300012205\|Ga0137362_10567286	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	980	Open in IMG/M
3300012209\|Ga0137379_11300208	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	633	Open in IMG/M
3300012211\|Ga0137377_10077026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	3132	Open in IMG/M
3300012211\|Ga0137377_10510192	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1140	Open in IMG/M
3300012349\|Ga0137387_11218579	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	531	Open in IMG/M
3300012361\|Ga0137360_10017761	All Organisms → cellular organisms → Bacteria → Proteobacteria	4686	Open in IMG/M
3300012362\|Ga0137361_10647065	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	967	Open in IMG/M
3300012918\|Ga0137396_11039770	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	590	Open in IMG/M
3300012922\|Ga0137394_10206882	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1677	Open in IMG/M
3300012923\|Ga0137359_10160026	All Organisms → cellular organisms → Bacteria	2009	Open in IMG/M
3300012925\|Ga0137419_10198018	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1486	Open in IMG/M
3300012929\|Ga0137404_11813102	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	567	Open in IMG/M
3300012944\|Ga0137410_10450447	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1045	Open in IMG/M
3300012971\|Ga0126369_11779888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	705	Open in IMG/M
3300012972\|Ga0134077_10344720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	634	Open in IMG/M
3300012975\|Ga0134110_10052663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	1606	Open in IMG/M
3300012976\|Ga0134076_10526388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	543	Open in IMG/M
3300012976\|Ga0134076_10607732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	511	Open in IMG/M
3300014154\|Ga0134075_10335227	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	662	Open in IMG/M
3300014157\|Ga0134078_10048970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	1456	Open in IMG/M
3300017656\|Ga0134112_10380772	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	580	Open in IMG/M
3300017997\|Ga0184610_1189079	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	686	Open in IMG/M
3300018431\|Ga0066655_10760818	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	657	Open in IMG/M
3300018468\|Ga0066662_11933434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	617	Open in IMG/M
3300018468\|Ga0066662_12560179	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	538	Open in IMG/M
3300018468\|Ga0066662_12708415	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	525	Open in IMG/M
3300018482\|Ga0066669_10871990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	803	Open in IMG/M
3300021073\|Ga0210378_10004443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6596	Open in IMG/M
3300025901\|Ga0207688_10963441	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	540	Open in IMG/M
3300026310\|Ga0209239_1128132	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1044	Open in IMG/M
3300026313\|Ga0209761_1088420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	1582	Open in IMG/M
3300026315\|Ga0209686_1031271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum → Methylocaldum szegediense	2044	Open in IMG/M
3300026324\|Ga0209470_1067165	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1676	Open in IMG/M
3300026325\|Ga0209152_10369817	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	554	Open in IMG/M
3300026326\|Ga0209801_1307444	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	563	Open in IMG/M
3300026327\|Ga0209266_1191924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	755	Open in IMG/M
3300026328\|Ga0209802_1152018	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	974	Open in IMG/M
3300026330\|Ga0209473_1149703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	946	Open in IMG/M
3300026342\|Ga0209057_1072492	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1493	Open in IMG/M
3300026342\|Ga0209057_1242746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	512	Open in IMG/M
3300026343\|Ga0209159_1191344	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	682	Open in IMG/M
3300026524\|Ga0209690_1100388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	1185	Open in IMG/M
3300026528\|Ga0209378_1034784	All Organisms → cellular organisms → Bacteria → Proteobacteria	2608	Open in IMG/M
3300026532\|Ga0209160_1109119	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1384	Open in IMG/M
3300026536\|Ga0209058_1280535	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	574	Open in IMG/M
3300026537\|Ga0209157_1271188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	641	Open in IMG/M
3300026538\|Ga0209056_10483053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	663	Open in IMG/M
3300026548\|Ga0209161_10091468	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1856	Open in IMG/M
3300026548\|Ga0209161_10329536	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	700	Open in IMG/M
3300026548\|Ga0209161_10489539	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	543	Open in IMG/M
3300027748\|Ga0209689_1015088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum → Methylocaldum szegediense	4947	Open in IMG/M
3300027775\|Ga0209177_10230953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	674	Open in IMG/M
3300028878\|Ga0307278_10408871	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	596	Open in IMG/M
3300032180\|Ga0307471_101264799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocaldum	901	Open in IMG/M
3300032180\|Ga0307471_104213938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	508	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.33%
Host-Associated	Host-Associated	3.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.50%
Plants	Host-Associated → Plants	3.67%
Aquatic	Environmental → Aquatic	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.83%
Freshwater	Environmental → Aquatic → Freshwater	0.92%
Sediment	Environmental → Aquatic → Sediment	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.07%
Loam	Environmental → Terrestrial → Soil → Loam	6.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	49.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	38.53%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	13.76%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	11.01%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.42%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.83%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_06114451	2228664022	Soil	MPAGGIVVRPPGDAPLRAVVVNGRPITRFTDTQAAVEEVPAKVRFIR
JGI25382J37095_100765792	3300002562	Grasslands Soil	RAGDGIDMDLTLTGDVMMPAGGIVVRPPGDAPLRAVLVNGKLITSFTDAQATIEELPAKVRLIR*
JGI25382J43887_104909932	3300002908	Grasslands Soil	MDLTLTGDVRMPAGGIVVQPPGDTPLRAVVVNGEPTTRFTGTXATIEELPAKVRLIR*
JGI25386J43895_100870361	3300002912	Grasslands Soil	GEAVDMDLTLTGDVRIPAGGIVVQPPGDAPLRAVVVNGEPSTRFTGTQATIEELPAKVRLIR*
Ga0066395_104213342	3300004633	Tropical Forest Soil	GVVVRPPSAGPLRAVVVNGKPITRFTDAQATIEELPAHVRLIL*
Ga0066674_104842931	3300005166	Soil	VDMDLTLTGDVTMPAGGIVVQPPGDTPLRAVVVNGKPTTRFTGTQATLEELPAKVRLIR*
Ga0066677_106354231	3300005171	Soil	TLGFTMRRDGDAIDMDLTLRGDAVMPGGGIVVQLPGDTPLRAVVVNGEPTTRFTGAQATIEEFPAKVRLIR*
Ga0066683_102709853	3300005172	Soil	VARPPGNAPLRAVLVNGKPITRFTDAQATIEELPAKVRLIR*
Ga0066690_108155931	3300005177	Soil	SLGGNVTMPAGGIVVQLPGDEPLRAVVVNGKPATRFTGTHAIIAELPAKVRFTR*
Ga0066678_101408191	3300005181	Soil	DVMMPAGGIVVQPPGDGPLRAVVVNGKATTRFTGAQATIEELPAKVRLIRGDTPR*
Ga0070670_1019400352	3300005331	Switchgrass Rhizosphere	VDLTLSPSRTGPAGGIVVRPPGDTPLRAVVVNGKPITRFTDSEATIEELPAKVRLIR*
Ga0066686_103226033	3300005446	Soil	PTWYGTLSFSMRRAGDGIDMDLTLTEDVMMPAGGIVARPPGNAPLRAVLVNGKPITRFTDAQATIEELPAKVRLIR*
Ga0066686_108599851	3300005446	Soil	MPAGGIVVQPPGDAPLRAVVVNGKPTTRFTGAEATIEELPAKVRLIR*
Ga0066686_111210002	3300005446	Soil	GLPTWYGTLGFTMRRDGDAVDMDLTLTGDARMPAGGIVVQLPGDAPLRAVVVDGEPTTSFTGAQATIEVFPAKVRLIR*
Ga0066689_104310041	3300005447	Soil	GDGVDMDVTLAGDVAMPAGRRVVQLPGDEPLRAVVVNGKPTMRFTGTHAIIAELPAKVRFTR*
Ga0066681_106296452	3300005451	Soil	TLTGDVTMPAGGIVVQPPGDTPLRAVVVNGKPTTRFTGTQATLEELPAKVRLIR*
Ga0070707_1001811022	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MMPGGGIVVQLPGDTPLRAVVVNGEPTTRFTGAQATIEEFPAKVRLIR*
Ga0070698_1008690392	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	GTLGFTMRRDGDAVDMNLTLTGDVTMPAGGIVVQAPADAPLRAVMVNGEPTTRFTGTQATIEQLPANVRLIR*
Ga0070697_1003051862	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	GGIVVQPPGDAPLRAVVVNGERSTRFTGTQATIEVLPAKVRLIR*
Ga0070697_1006500461	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	GGIVVQPPGDGPLRAVVVNGAPTTRFTGTQATIEELPAKVRLIR*
Ga0066695_106955332	3300005553	Soil	TMPAGGIVVQLPGDAPLRAVVVNGEPTTRFTGAQATIEVFPAKVRLIR*
Ga0066692_106961162	3300005555	Soil	MDLTLTGDVRMPAGGIVVQPPGDTPLRAVVVNGEPTTRFTGTQATIEELPAKVRLIR*
Ga0066707_103252372	3300005556	Soil	GDAPLRAVVVDGEPTTSFTGAQATIEVFPAKVRLIR*
Ga0066704_100249881	3300005557	Soil	GFTMRRDGDAIDMDLTLRGDAMMPGGGIVVQLPGDTPLRAVVVNGEPTTRFTGAQATIEEFPAKVRLIR*
Ga0066704_102647161	3300005557	Soil	GDGVDMDVTLGGDVAMPAGGIVVQLPGDEPLRAVVVNGKPATRFTDTHATIDDLPAKVRFIR*
Ga0066698_103485372	3300005558	Soil	GGIVVQLPGDAPLRAVVVNGEPTTSFTGAQATIEVFPAKVRLIR*
Ga0066705_105619061	3300005569	Soil	TWYGTLGFTMKRDGDAVDMDLTLGGDVMMPAGGIVVQPPGDGPLRAVVVNGKPTMRFTGTHAIIAELPAKVRFTR*
Ga0066654_104927801	3300005587	Soil	AMPAGGIVVQLPGDEPLRAVVVNGKPTMRFTGTHAIIAELPAKVRFTR*
Ga0068870_109311072	3300005840	Miscanthus Rhizosphere	LSQSRPGPAGGIVVRPPGDTPLRAVVVNGKSITLFTDSEATIEELPAKVRLIR*
Ga0066651_101410063	3300006031	Soil	LGFTMRRDGDAIDMDLTLRGDAVMPGGGIVVQLPGDTPLRAVVVNGEPTTRFTGAQATIEEFPAKVRLIR*
Ga0066656_106532622	3300006034	Soil	MPAGGIVVQLPGDDPLRAVVVNGKPTTRFTGTHAIIDELPAKARFTR*
Ga0079222_103526172	3300006755	Agricultural Soil	GAADGIHLEVSLTGSVTMPAGGIVVRPPGDAPLRAVIVNGKPIARFTDTQATIGETPATVRLIR*
Ga0066653_102941231	3300006791	Soil	VTMPAGGIVVQPPGDTPLRAVVVNGKPTTRFTGTQATLEELPAKVRLIR*
Ga0066659_114407141	3300006797	Soil	RRDGDAVDMDLTLTGDVMMPAGGIVVQPPGDAPLRAVVVNGEPTTRFTGTQATIEELPAKVRLIR*
Ga0066660_115295652	3300006800	Soil	LAFTMRRNGDGVDMDVTLGGDVAMPAGGIVVQLPGDEPLRAVVVNGKPTMRFTGTHAIIAELPAKVRFTR*
Ga0066710_1035654981	3300009012	Grasslands Soil	GPLGFTLRRDGDAVDMGLTLTGDVMMPAGGIVVQPPVDGPLRAVVVNGKPTTRFTGAQATIEELPAKVRLIRGDTPR
Ga0111539_112121132	3300009094	Populus Rhizosphere	PKLRAVVVNGKPITRFIDAEATVQELPAKVRLLR*
Ga0066709_1026934131	3300009137	Grasslands Soil	TWYGTLGFTMRRDGDAVDMDLTLTGDARMPAGGIVVQLPGDAPLRAVVVDGEPTTSFTGAQATIEVFPAKVRLIR*
Ga0134109_105046873	3300010320	Grasslands Soil	VQLPGDTPLRAVVVNGEPTTRFTGAQATIEEFPAKVRLIR*
Ga0134067_101078581	3300010321	Grasslands Soil	DGDAIDMDLTLRGDAVMPGGGIVVQLPGDTPLRAVVVNGEPTTHFTGAQATIEEFPAKVRLIR*
Ga0134084_100041061	3300010322	Grasslands Soil	TLTGDAMMPPGGIVVRPPGDAPLRAVVVNGEPTTRFTGTQATIEELPAKVRLIR*
Ga0134065_103387662	3300010326	Grasslands Soil	TMKRDGDAVDMDLTLGGDVMMPAGGIVVQPPGDGPLRAVVVNGKATTRFTGAQATIEELPAKVRLIRGDTPR*
Ga0134111_102052121	3300010329	Grasslands Soil	PPGGIVVRPPGDAPLRAVVVNGEPTTRFTGTQATIEALPAKVRLIR*
Ga0134071_100534962	3300010336	Grasslands Soil	DLTLTGDVMMPAGGIVVRPPGDAPLRAVVVNGKPITRFTDAQATVEELPAKVRLIR*
Ga0134062_106702572	3300010337	Grasslands Soil	RRDGDAVDMDLTLTGDVTMPAGGIVVQPPGDTPLRAVVVNGKPTTRFTGTQATLEELPAKVRLIR*
Ga0126370_115925241	3300010358	Tropical Forest Soil	PSAGPLRAVVVNGKPITRFTDAQATIEELPAHVRLIL*
Ga0126377_102258852	3300010362	Tropical Forest Soil	RMPAGGVVVRPPGDAPLRAVVVNGRPITRFTGTQAVVEEVPAKVQFVR*
Ga0126377_136197162	3300010362	Tropical Forest Soil	MRHAGDGVDVDLTLTGNVMMPAGGIVVRPPGHAPLRAVVVNGKPITRFTESQATIEELPAKVRLIR*
Ga0134066_100535893	3300010364	Grasslands Soil	RRDGDAIDMDLTLRGDAVMPGGGIVVQLPGDTPLRAVVVNGEPTTRFTGAQATIEEFPAKVRLIR*
Ga0126379_100882121	3300010366	Tropical Forest Soil	LEIALTGDVTMPSGGIVVRPPSDAPLRAAVVNGRPITRFTEAQATVEELPAQVRLMW*
Ga0126381_1021930891	3300010376	Tropical Forest Soil	TMPAGGIVVRPPADAPLRAVAVNGKPITRFTDAQAIVEELPAQVRLTW*
Ga0126383_123434392	3300010398	Tropical Forest Soil	PSDAPLRAAVVNGRPITRFTDAQATVEELPAQVRLIW*
Ga0137392_101525342	3300011269	Vadose Zone Soil	DAPLRAVTVNGEPTTHFTGTQATIEELPAKVRLIR*
Ga0137363_116366071	3300012202	Vadose Zone Soil	PAGGIVVQPPGDAPLRAVVVNGEPSTRFTGTQATIGELPAKVRLIR*
Ga0137362_105672861	3300012205	Vadose Zone Soil	GDVMMPTGGIVVQPPGDAPLRAVVVNGEPSTRFTGTQATLEELPAKVRLIR*
Ga0137379_113002083	3300012209	Vadose Zone Soil	GLPTWYGTLGFTMRRDGDAIDMDLTLRGDAVMPGGGIVVQLPGDTPLRAVVVNGEPTTRFTGAQATIEEFPAKVRLIR*
Ga0137377_100770261	3300012211	Vadose Zone Soil	TLTGDVMMPPGGIVVRPPGDAPLRAVVVNGEPTTRFTGTQATIEELPAKVRLIR*
Ga0137377_105101921	3300012211	Vadose Zone Soil	GGIVVQPPGDAPLRAVVVNGEPSTRFTGTQATIEELPAKVRLIR*
Ga0137387_112185792	3300012349	Vadose Zone Soil	PAGGIVVRPPGDAPLRAVVVNGKPITRFTDAQATIEELPAKVRLIR*
Ga0137360_100177615	3300012361	Vadose Zone Soil	MDLTLTGDVRIPAGGIVVQPPGDAPLRAVVVNGEPSTRFTGTQATIEELPAKVRLIR*
Ga0137361_106470652	3300012362	Vadose Zone Soil	VRIPAGGIVVQPPGDAPLRAVVVNGEPTTRFTGTQATIEELPAKIRLIR*
Ga0137396_110397702	3300012918	Vadose Zone Soil	QPPGDTPLRAVLVNGEPTTRFTGAQATIEEFPAKVRLIR*
Ga0137394_102068822	3300012922	Vadose Zone Soil	MDLTLRGDVAMPAGGIVVQPPGDTPLRAVIVNGEPTTRFTGAQATIEDFPAKVRLIR*
Ga0137359_101600262	3300012923	Vadose Zone Soil	DGIAVDLTLSQSRTGPAGGIVVRPPGDTPLRAVVVNGKSITRFTDSEATIEELPAKVRLIR*
Ga0137419_101980182	3300012925	Vadose Zone Soil	GDVRIPAGGIVVQPPGDAPLRAVVVNGEPSTRFTGTQATIEELPAKVRLIR*
Ga0137404_118131021	3300012929	Vadose Zone Soil	GDAPLRAVVVNGEPSTRFTGTQATLEELPAKVRLIR*
Ga0137410_104504471	3300012944	Vadose Zone Soil	IPAGGSVVQPPGDAPLRAVVVNGEPSTRFTGTQATIEELPAKVRLIR*
Ga0126369_117798882	3300012971	Tropical Forest Soil	GIVVRPPGDVPLRAVIVNGKPITRFTDAQATVEELPAKVRLIR*
Ga0134077_103447203	3300012972	Grasslands Soil	RDGDAIDMDLTLRGDAMMPGGGIVVQLPGDTPLRAVVVNGEPTTRFTGAQATIEEFPAKVRLIR*
Ga0134110_100526632	3300012975	Grasslands Soil	VDMDLTLTGDVRIPAGGIVVQPPGDAPLRAVVVNGEPRTRFTGTQATIEELPAKVRLIR*
Ga0134076_105263882	3300012976	Grasslands Soil	VDMDLTLTGDAMMPPGGIVVRPPGDVPLRAVVVNGEPTTRFTGTQATIEELPAKVRLIR*
Ga0134076_106077322	3300012976	Grasslands Soil	GDVTMPAGGIVVQPPGDTPLRAVVVNGKPTTRFTGTQATLEELPAKVRLIR*
Ga0134075_103352271	3300014154	Grasslands Soil	MRRDGDAVDADLTLTGDVMKPAGGIVVQPPGDAPLRAVVVNGEPSTRFTGTQATIGELPAKVRLIR*
Ga0134078_100489701	3300014157	Grasslands Soil	LTGDVTMPAGGIVVQPPGDTPLRAVVVNGKPTTRFTGTQATLEELPAKVRLIR*
Ga0134112_103807721	3300017656	Grasslands Soil	MPADGIVVQLPGDAPLRAVVVDGEPTTSFTGAQATIEELPAKVRLIRGDTPR
Ga0184610_11890792	3300017997	Groundwater Sediment	AGDGVDMDLTLTGDVMMPAGGIVVRPPGDAPLRAVVVNGKPITRFTDAQATVEELPAKVRLIR
Ga0066655_107608181	3300018431	Grasslands Soil	LTGDVTMPAGGIVVQPPGDTPLSAVVVNGKPTTRFTGTQATLEELPAKVRLIR
Ga0066662_119334342	3300018468	Grasslands Soil	GFTMREKGDEVDMDLTLTGDAMMPPGGIVVRPPGDVPLRAVVVNGEPTTRFTGTQATIEELPAKVRLIR
Ga0066662_125601791	3300018468	Grasslands Soil	LTLTEDVMMPAGGIVARPPGNAPLRAVLVNGKPITRFTDAQATIEELPAKVRLIR
Ga0066662_127084152	3300018468	Grasslands Soil	VVQPPGDGPLRAVVVNGKSATRFTGAQATIEELPAKVRLIRGDTPR
Ga0066669_108719901	3300018482	Grasslands Soil	VMMPPGGIVVRPPGDAPLRAVVVNGEPTTHFTGTQATIEELPAKVRLIR
Ga0210378_100044431	3300021073	Groundwater Sediment	VVRPPGDAPLRAVVVNGKPITRFTDAQATVEELPAKVRLIR
Ga0207688_109634411	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	VERVPTWYGTLDFAMKRAHDGIAVDLTLSQSRPGPAGGIVVRPPGDTPLRAVVVNGKSITRFTDSEATIEELPAKVRLIR
Ga0209239_11281321	3300026310	Grasslands Soil	VSLGGNVTMPAGGIVVQLPGDEPLRAVVVNGKPATRFTDTHATIDDLPAKVRFIR
Ga0209761_10884201	3300026313	Grasslands Soil	DLTLTGDVMMPAGGIVVRPPGDAPLRAVLVNGKLITSFTDAQATIEELPAKVRLIR
Ga0209686_10312713	3300026315	Soil	LALSGDVMMPAGGIVVQPPGDGPLRAVVVNGKATTRFTGAQATIEELPAKVRLIRGDTPR
Ga0209470_10671651	3300026324	Soil	DGVDMDLTLTGDVMMPAGGIVVRPPGDAPLRAVVVNGKPITRFTDAQATVEELPAKVRLI
Ga0209152_103698172	3300026325	Soil	GPLRAVVVNGKPTTRFSGAQATIEELPAKVRLIRGDTPR
Ga0209801_13074442	3300026326	Soil	VDMDLALSGDVMMPAGGIVVQPPGDGPLRAVVVNGKATTRFTGAQATIEELPAKVRLIRGDTPR
Ga0209266_11919241	3300026327	Soil	DLTLTGDAMMPPGGIVVRPPGDVPLRAVVVNGEPTTRFTGTQATIEELPAKVRLIR
Ga0209802_11520182	3300026328	Soil	DVMMPAGGIVVQPPGDAPLRAVVVNGEPSTRFTGTQATLEELPAKVRLIR
Ga0209473_11497033	3300026330	Soil	DLTLRGDAMMPGGGIVVQLPGDTPLRAVVVNGEPTTRFTGAQATIEEFPAKVRLIR
Ga0209057_10724921	3300026342	Soil	PPGDTPLRAVVVNGKPTTRFTGTQATLEELPAKVRLIR
Ga0209057_12427462	3300026342	Soil	NGDAVDMDLTLTGDVMMPPGGIVVRPPGDAPLRAVVVNGEPTTRFTGTQATIEELPAKVRLIR
Ga0209159_11913441	3300026343	Soil	TGDVTMPAGGIVVQLPGDAPLRAVVVNGEPTTRFTGAQATIEVFPAKVRLIR
Ga0209690_11003882	3300026524	Soil	PPGDVPLRAVVVNGEPTTRFTGTQATIEELPAKVRLIR
Ga0209378_10347844	3300026528	Soil	LTGDVMMPAGGIVVQPPGDTPLRAVVVNGEPTTRFTGTQATIEELPAKVRLIR
Ga0209160_11091191	3300026532	Soil	GDAVDMDLTLTGDVMMPAGGIVVQPPGDAPLRAVVVNGEPSTRFTGTQATLEELPAKVRLIR
Ga0209058_12805351	3300026536	Soil	TGDARMPAGGIVVQLPGDAPLRAVVVNGEPTTSFTGAQATIEVFPAKVRLIR
Ga0209157_12711882	3300026537	Soil	WYGTLGFTMRRDGDTVDMDLTLTGDVRIPAGGIVVQPPGDAPLRAVVVNGKPSTRFTGTQATIEELPAKVRLIR
Ga0209056_104830532	3300026538	Soil	GGIVVRPPGDAPLRAVVVNGEPTTRFTGTQATIEELPAKVRLIR
Ga0209161_100914681	3300026548	Soil	AVVVNGKPTTRFTGAQATIEELPAKVRLIRGDTPR
Ga0209161_103295361	3300026548	Soil	MDVSLGGDVAMPAGGIVVQLPGDEPLRAVVVNGKPATRFTGTHATIDDLPAKVRFIR
Ga0209161_104895392	3300026548	Soil	FTMRRDGDAVDMDLTLTGDVRIPAGGIVVQPPGDAPLRAVVVNGEPSTRFTGTQATIEELPAKVRLIR
Ga0209689_10150881	3300027748	Soil	GNGDAVDMDLTLTGDVMMPPGGIVVRPPGDAPLRAVVVNGEPTTRFTGTQATIEELPAKVRLIR
Ga0209177_102309532	3300027775	Agricultural Soil	GGIVVRPPGDAPLRAVIVNGKPIARFTDTQATIGETPATVRLIR
Ga0307278_104088712	3300028878	Soil	PTWYGTLGFAMRRAGDGVDMDLTLTGDVMMPAGGIVVRPPGDAPLRAVVVNGKPITRFTDAQATVEELPAKVRLIR
Ga0307471_1012647992	3300032180	Hardwood Forest Soil	GDGVDMEIALTGDVRMPAGGIVVRPPGDAPLRAAIVNGKPTARFTDAQATVDELPAKIRLIR
Ga0307471_1042139382	3300032180	Hardwood Forest Soil	LALTGDVTMPAGGIVVRPPGDAPLRAVVVNGKPTTRFTGTEATIEELPAKVRLLSRPRPMSPSRE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088697

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences