NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F088745

Metagenome Family F088745

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088745
Family Type Metagenome
Number of Sequences 109
Average Sequence Length 56 residues
Representative Sequence MSNDLDIKIYLALDKAEHQIRRSAYLSTAEPFQKKIYEALELIKEAKEEVEKRLDK
Number of Associated Samples 66
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 88.99 %
% of genes near scaffold ends (potentially truncated) 18.35 %
% of genes from short scaffolds (< 2000 bps) 64.22 %
Associated GOLD sequencing projects 53
AlphaFold2 3D model prediction Yes
3D model pTM-score0.77

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (77.064 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(67.890 % of family members)
Environment Ontology (ENVO) Unclassified
(88.991 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(98.165 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 55.95%    β-sheet: 0.00%    Coil/Unstructured: 44.05%
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510152025303540455055MSNDLDIKIYLALDKAEHQIRRSAYLSTAEPFQKKIYEALELIKEAKEEVEKRLDKSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.77
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Structural matches with SCOPe domains



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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Unclassified
22.9%77.1%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Marine
Deep Ocean
Seawater
Seawater
Surface Seawater
Marine
Aqueous
Seawater
Marine
Seawater
Marine Sediment
Seawater
67.9%11.9%7.3%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
KVRMV2_10185869723300002231Marine SedimentMNKDLDMKIYLALDKVERQIRRAAYLATAETFQKKIYDALELIVEAKEEVEKRLDNSP*
JGI25133J35611_1000007433300002514MarineMNKDLDTKIWLALDKTEHQIRRSAYLATGEIFQKKIYEALDLIKEVKEEVEKRLDTKP*
JGI25133J35611_10000416383300002514MarineMSSNLDKKIYLALDNIERQIRRVAYLSTAESFQREIYDALEIIKEVKAKVEKRVDK*
JGI25133J35611_1000515543300002514MarineMSNDLNIKIYLALDNLEHKIRRAAYLSTGEEFQKDIYDALDIIKNVKEIVEKRVDK*
JGI25130J35507_1000295133300002519MarineMSNDLDVKIYLAIDKVEREIRRVAYLSTAEPFQKDIYEALEIMKKVKKIVEKRVDK*
JGI25130J35507_100113463300002519MarineMSKSLDQKIYLALDTIEYQLRRAAYLSTAEPFQKEIYDALEIIKEVKAKVEKRVDK*
JGI25130J35507_101167753300002519MarineMSKDLDIKIYLALDSIEHQIRRAAYLSTAEPFQKDIYAALEIIKEVKKEMEKRVDK*
Ga0066842_1005171513300005658MarineMSKELDIKIYLALDKTEHQIRRSAYLATAEPFQKKIYEALELIKEAKEEVEKRLDKDP*
Ga0098038_1000343193300006735MarineMKNELNTKIWLALDKAEHQIRKSAYLATAEPFQKKIYDALDLIKQAKSEVEKRLDK*
Ga0098038_1000368153300006735MarineMSKDLDIKIFLSLDKIEHQIRRAAYLSTAEPFQKKIYDALDLIKEVKEEVEKRLDK*
Ga0098038_120871433300006735MarineMSKDLDIKIYLALDKIEHQIRRAAYLSTAEPFQKKIYDALDIIKEVKEEVEKRVDKN
Ga0098033_101677263300006736MarineMSNDLDIKIYLALDKIEHLIRRAAYLSTAETFQKDIYDSLEIIKEVKTKVGKRLDK*
Ga0098033_104129843300006736MarineMNKELDQKIYLALDKAEHQIRRSAYLATAEPFQKKIYEALDLIKEAKEEVEKRLDK*
Ga0098037_122560213300006737MarineMNNELDTKIWLALDKAEHQIRKSAYLATAEPFQKKIYEALDLIKQAKEE
Ga0098035_103143033300006738MarineMSNDLDIKIYLALDKVEHEIRRAAYLSTAEPFQKQIYEALEIIKEVKVKVSKRVDK*
Ga0098035_109633233300006738MarineMNNELDQKIYLALDKAEHQIRRSAYLATAEPFQKKIYEALDLIKEAKEEVEKRLDK*
Ga0098035_118710233300006738MarineMSKDLDIKIYLALDKIEHQIRRAAYLSTAEPFQKDIYDALEIIKEVKAKVEKRVDK*
Ga0098035_129139833300006738MarineMSNELDQKIYLALGTIEYQIRRAAYLSTAEPFQKDIYEALDIIKEVKK
Ga0098035_131922613300006738MarineMSKELDTKIWLSLDKVEHQIRRAAYLSTGEPFQKKIYEALDIIKEVKLKAAKKLDN*
Ga0098042_100952463300006749MarineMNKDLDTKIWLALDKLEHRIRRAAYLATAEPYQKKIYEALEIIKEVKGEVEIKLDKQ*
Ga0098042_103352653300006749MarineMNDDLDVKIYLALDKVEHQIRRAAYLATAEPFQKNIYDALELIKEAKKEVEKRLDKK*
Ga0098042_108514643300006749MarineVKNDLDTKVWLALDKLEHQIRRAAYLATAEPFQKKIYDALELIKEAKEEVEK
Ga0098058_110631813300006750MarineMSKELDQKIYLALDKVEHQIRRSAYLATAEPFQKKIYEALDLIKEAKEEVEKRLDK*
Ga0098058_114372013300006750MarineKIYLALDKAEHQIRRSAYLATAEPFQKKIYEALDLIKEAKEEVEKRLDK*
Ga0098044_129011943300006754MarineMNKELDTKIWLALDKVEHQIRKAAYLATAEPFQKKIYDALDLITEAKKEVEKR
Ga0098044_139354113300006754MarineMSKDLDIKIYLALDKIEHQIRRVAYLSTVEPFQKDIYEALEIIKEVKEKVEKRVDK*
Ga0098054_122955733300006789MarineMNKGLDTKIWLALDKTEHQIRRSAYLATGEVFQKKIYDALELIKEAKEEVEKRLDNNP*
Ga0098055_141000533300006793MarineMSKELDIKIYLALDKTEHQIRRSAYLATAEPFQKKIYEALELIKEAKEEVEKRLD
Ga0070749_10000196163300006802AqueousVSDDLDVKIYLSLDKVEYQLRRAAYLSTAEPFQKDIYECLDKITKIKKKVSKRLDK*
Ga0098051_113864713300006924MarineMKNDLDVKIYLALDSLEHKIRRAAYLSTGEEFQKDIYDALEIIKNVKEIVEKRVDK*
Ga0098036_117678833300006929MarineMNKELDTKIWLALDKIEHLIRRAAYLATAEPYQKNIYDALDIIKDVKEEVEKKLDN*
Ga0098052_101278363300008050MarineMNKGLDTKIWLALDKTEHQIRRSAYLATGEAFQKKIYDALELIKEAKEEVEKRLDNNP*
Ga0114898_100999933300008216Deep OceanMSKDLDQKIYLALDKTEHQIRRTAYLSTAEPFQKKIYEALELIKEAKEEVEKRLR*
Ga0114898_104140433300008216Deep OceanMSNDLDVKIYLALDKVEHEIRRVAYLSTAEPFQKDIYEALEIMKKVKKIVEKRVDK*
Ga0114898_114036233300008216Deep OceanLALDTIEHQLRRAAYLSTAEPFQKEIYDALEIIKEVKAKVEKRVDK*
Ga0114905_123573633300008219Deep OceanMSNDLDVKIYLALDSIEHKIRRAAYLSTGETFQKDIYDALEIIKNVKEIVEKRVDK*
Ga0114910_101155873300008220Deep OceanMSKDLDQKIYLALDKTEHQIRRTAYLSTAEPFQKKIYEALELIKEAKEEVEKRLDK*
Ga0115651_119702343300008952MarineMSNDLDIKIYLALDKAEHQIRRSAYLSTAEPFQKKIYEALELIKEAKEEVEKRLDK*
Ga0114996_1022789223300009173MarineIKIYLALDKIEHLIRRAAYLSTAEPFQKEVYDALEIIKKVKEKVEKRVDK*
Ga0114996_1028485023300009173MarineMSDDLDIKIYLALDTIEHQIRRAAYLSTAEPFQKDIYDSLEIIKDVKAKVEKRLDK*
Ga0114996_1127603923300009173MarineMNNGLDIKIYLALDKIEHQIRRAAYLSTAEPFQKDIYDALEIIKKVKEKVEKRVDK*
Ga0114993_1095995723300009409MarineMSDDLDIKIYLALDTIEHQIRRAAYLSTAEPFQKDIYAALEIIKEVKEKVEKRLDK*
Ga0114908_1003148143300009418Deep OceanMKNSLDVKIYLALDSIEHKIRRAAYLSTGEDFQKDIYASLEIIKKVKEIVEKRVDKS*
Ga0115011_1122006133300009593MarineMNNELDTKIWLALDKAEHQIRKSAYLATAEPFQKKIYDALDLIKEAKGEVEKRLDK*
Ga0114906_110372833300009605Deep OceanMSNNLDVKIYLALDSIEHKIRRAAYLSTGEPFQKDIYDALDIIKNVKEIVEKKVDK*
Ga0114906_120230923300009605Deep OceanMKNSLDVKIYLALDKIEHELRRAAYLSTAEPFQKDIYDALEIIKEVKAKVEKRVDK*
Ga0114906_123216023300009605Deep OceanMSKSLDQKIYLALDTIEHQLRRAAYLSTAEPFQKEIYDALEIIKEVKAKVEKRVDK*
Ga0114999_1049704233300009786MarineSKDLDIKIYLAIDSIEHKIRRAAYLSTGEPFQKDIYEALEIIKNVKKIVEKRVDK*
Ga0098043_1000385133300010148MarineMKKELDTKIWLGLDKIEHKIRRVAYLSTGEEFQRKIYDALDIIKEVKEEVTKRLDN*
Ga0098043_1001839113300010148MarineMNNELDTKIWLSLDKIEHKIRRVAYLATTEPYQNKIYVALEIIKEVKEEVEKKLDK*
Ga0098043_111838513300010148MarineVKNDLDTKVWLALDKLEHQIRRAAYLATAEPFQKKIYDALELIKEAKEEVEKRLDK*
Ga0098049_109993413300010149MarineIYLALDSLEHKIRRAAYLSTGEEFQKDIYDALEIIKNVKEIVEKRVDK*
Ga0098056_104798113300010150MarineMKNDLDVKIYLALDSLEHKIRRAAYLSTGEEFQKDIYDALEIIKNVKEI
Ga0098059_103690223300010153MarineMNKELDTKIWLALDKIEHLIRRAAYLATAEPYQKNIYDALDIMKDVKEEVEKKLDN*
Ga0098059_111187543300010153MarineMSKDLDIKIYLALDKAEYQIRRSAYLATAEPFQKKIYEALELIKEAKEEVEKRLDKDP*
Ga0133547_1066892653300010883MarineMNKDLDIKIYLAIDGIEHKIRRAAYLSTGEPFQKDIYEALEIIKKVKEIVEKRVDKS*
Ga0160423_1029428343300012920Surface SeawaterMSNELDTKIWLALDKAEHQIRKSAYLATAEPFQKKIYDALDLIKEAKGEVEKRLDK*
Ga0160423_1093354513300012920Surface SeawaterMSNDLDVKIYLALDKIEHKIRRAAYLATAEPYQRKIYEALDIIKDVKGEVEKKLDK*
Ga0163180_1120973223300012952SeawaterMNKELDTKIWLALDKAEHQIRKSAYLATAEPFQKKIYDALDLIKEAKQEVEKRLDK*
Ga0163180_1157571613300012952SeawaterELDTKIWLALDKAEHQIRKSAYLSTAEPFQKKIYEALDLIVEVKKEVGKRLDK*
Ga0163179_1191704123300012953SeawaterMNKELDQKIYLALDKIEHQIRRAAYLATAEPFQKKIYDALVLIKQAKQEVEKRLDN*
Ga0181367_107199023300017703MarineMSNDLDIKIYLALDKVEHEIRRAAYLSTAEPFQKQIYEALEIIKEVKVKVSKRVDK
Ga0181414_115305023300017759SeawaterMNNDLDVKIYLALDKVEHQIRRAAYLATAEPFQKNIYDALELIKEAKKEVEKRLDKE
Ga0206125_1007722743300020165SeawaterMSNKSDKELDMKIYLALDKIENLLRRAAYLATAEPYQEKIYNAIDIIKDTKAEVEKKLDN
Ga0211532_1006888233300020403MarineMSKDLDIKIFLSLDKIEHQIRRAAYLSTAEPFQKKIYDALDLIKEAKEEVEKRLDN
Ga0211622_1000185373300020430MarineMSKELDTKIWLTLDKVEHQIRRAAYLATAEEYQKKIYDALDIIKEVKEEVEKKLDKPKPKGYNI
Ga0211543_1003299753300020470MarineMKNELDTKIWLALDKAEHQIRKSAYLATAEPFQKKIYEALGLIVEVKKEVGKRLDK
Ga0211543_1018943433300020470MarineMSKDLDVKIYLALDKIEHQIRRAAYLATAEPFQKKIYDALDLIKEAKEEIEKRLDK
Ga0211579_1002619343300020472MarineMSKNLDMKIYLALDKIERQIRRAAYLATAETFQKKIYDALELIVEAKEEVEKRLDNSP
Ga0211625_1000817573300020473MarineMSKELDTKIWLSLDKIEHQLRRVAYLATTEPYQKKIYEALDLIKEAKEEVEKRLDK
Ga0211585_1069472523300020477MarineMSKELDVKIYLALDKVEHQIRRAAYLSTAEPFQKKIYDALDLIKEVKEEVEKRVDNSP
Ga0187827_1062732323300022227SeawaterMNDDLDIKIYLALDKIEHLIRRAAYLSTAEPFQKDIYDALEIIKEVKLKVEKRVDK
Ga0208920_109204313300025072MarineKIYLALDKAEHQIRRSAYLATAEPFQKKIYEALDLIKEAKEEVEKRLDK
Ga0208156_107700923300025082MarineMNKELDQKIYLALDKAEHQIRRSAYLATAEPFQKKIYEALDLIKEAKEEVEKRLDK
Ga0208157_1000157323300025086MarineMKNELNTKIWLALDKAEHQIRKSAYLATAEPFQKKIYDALDLIKQAKSEVEKRLDK
Ga0208157_100392353300025086MarineMSKDLDIKIFLSLDKIEHQIRRAAYLSTAEPFQKKIYDALDLIKEVKEEVEKRLDK
Ga0208010_109595033300025097MarineMSKELDQKIYLALDKVEHQIRRSAYLATAEPFQKKIYEALDLIKEAKEEVEKRLDK
Ga0208159_102530353300025101MarineMNDDLDVKIYLALDKVEHQIRRAAYLATAEPFQKNIYDALELIKEAKKEVEKRLDKK
Ga0208159_109356613300025101MarineWLALDKLEHRIRRAAYLATAEPYQKKIYEALEIIKEVKGEVEIKLDKQ
Ga0208013_101138433300025103MarineMSKELDTKIWLSLDKVEHQIRRAAYLSTGEPFQKKIYEALDIIKEVKLKAAKKLDN
Ga0209349_117357133300025112MarineMSSNLDKKIYLALDNIERQIRRVAYLSTAESFQREIYDALEIIKEVKAKVEKRVDK
Ga0209349_118215723300025112MarineMSKELDIKIYLALDKTEHQIRRSAYLATAEPFQKKIYEALELIKEAKEEVEKRLDKDP
Ga0209349_118407923300025112MarineMSNDLNIKIYLALDNLEHKIRRAAYLSTGEEFQKDIYDALDIIKNVKEIVEKRVDK
Ga0209434_10000251333300025122MarineMSNDLDVKIYLAIDKVEREIRRVAYLSTAEPFQKDIYEALEIMKKVKKIVEKRVDK
Ga0209434_1000562143300025122MarineMERQRFFPRFIWRKLKMSKSLDQKIYLALDTIEYQLRRAAYLSTAEPFQKEIYDALEIIKEVKAKVEKRVDK
Ga0209434_1001406153300025122MarineMSDDLDIKIYLALDKTEHQIRRAAYLSTAEPFQKKIYEALELIKEAKKEVEKRLDK
Ga0209434_1002159133300025122MarineMSKDLDIKIYLALDSIEHQIRRAAYLSTAEPFQKDIYAALEIIKEVKKEMEKRVDK
Ga0209434_111111543300025122MarineMNNELDQKIYLALDKAEHQIRRSAYLATAEPFQKKIYEALDLIKEAKEEVEKRLDK
Ga0209128_1004545113300025131MarineMNKDLDTKIWLALDKTEHQIRRSAYLSTGEVFQKKIYEALDLIKEVKEEVEKRLDTKP
Ga0209232_100986713300025132MarineMKNDLDSKIYLALDKIEHQIRRAAYLATAESYQKKIYEALDIIKDVKEEVEKKLDK
Ga0209232_114939123300025132MarineMNKELDIKIYLALGKVEQQTRRAAYLATAEPFQKKIYDALELIVEAKKEVEKRLDK
Ga0209232_120672723300025132MarineMSNDLDIKIYLALDKLEHQARRAAYLATAEPFQKKIYEALDIIKEVKKEVEKRLDNNP
Ga0208299_100359253300025133MarineMNKGLDTKIWLALDKTEHQIRRSAYLATGEAFQKKIYDALELIKEAKEEVEKRLDNNP
Ga0208299_100640663300025133MarineMNKDLDTKIWLALDKTEHQIRRSAYLATGEVFQKKIYDALELIKEAKEEVEKRLDNNP
Ga0208299_116910723300025133MarineMNKELDQKIYLALDKIEHQIRRVAYLSTTEPFQKDIYDALEIIKDVKEIVEKRVDK
Ga0209756_1000046783300025141MarineMNKDLDTKIWLALDKTEHQIRRSAYLATGEIFQKKIYEALDLIKEVKEEVEKRLDTKP
Ga0209756_104768543300025141MarineMNKELDQKIYLALDKIEHLIRRAAYLSTAEPYQKKIYDALDIIKDVKEEVEKKLDN
Ga0209756_107006623300025141MarineVSKKELDIKIYLALDKAEHQIRRTAYLATAETFQKKIYEALEIIKEVKKEVEKRVDK
Ga0209756_111035313300025141MarineKKKHYQKFIWRKWKMSKDLDIKIYLALDKIEHLTRRAAYLSTAEPFQKDIYDALEIIKKVKEKVEKRVDK
Ga0208029_101168923300025264Deep OceanMSKDLDQKIYLALDKTEHQIRRTAYLSTAEPFQKKIYEALELIKEAKEEVEKRLR
Ga0208449_103947743300025280Deep OceanMKNSLDVKIYLALDSIEHKIRRAAYLSTGEDFQKDIYASLEIIKKVKEIVEKRVDKS
Ga0208030_114958523300025282Deep OceanMKNSLDVKIYLALDKIEHELRRAAYLSTAEPFQKDIYDALEIIKEVKAKVEKRVDK
Ga0208030_115221823300025282Deep OceanMSKSLDQKIYLALDTIEHQLRRAAYLSTAEPFQKEIYDALEIIKEVKAKVEKRVDK
Ga0208644_101540453300025889AqueousVSDDLDVKIYLSLDKVEYQLRRAAYLSTAEPFQKDIYECLDKITKIKKKVSKRLDK
Ga0209501_1059625933300027844MarineMSDDLDIKIYLALDTIEHQIRRAAYLSTAEPFQKDIYAALEIIKEVKEKVEK
Ga0209404_1128801133300027906MarineMNNELDTKIWLALDKAEHQIRKSAYLATAEPFQKKIYDALDLIKETKSEVEKRLDK
Ga0256381_100114473300028018SeawaterMSKSLDQKIYLALDTIEHQLRRAAYLSTAEPFQKEIYDALEIIKEV
Ga0183748_109029823300029319MarineMSKHLDTKIYLALDKAEYEIRRSAYLATAEPFQKKIYEALELIKEAKQEVEKRLDKA
Ga0315334_1109408323300032360SeawaterVNKELDQKIYLALDKAEHQIRRSAYLSTAEPFQKKIYAALDLIKEAKEEVEKRLDKQT


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