NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F088822

Metagenome / Metatranscriptome Family F088822

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088822
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 45 residues
Representative Sequence MDQKAIISVLFAAVMGLIGWNIKTTNELQLSVQRLEIILLNDAMVK
Number of Associated Samples 72
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 57.80 %
% of genes near scaffold ends (potentially truncated) 27.52 %
% of genes from short scaffolds (< 2000 bps) 77.98 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction Yes
3D model pTM-score0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (44.037 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(22.936 % of family members)
Environment Ontology (ENVO) Unclassified
(52.294 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(81.651 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 58.11%    β-sheet: 0.00%    Coil/Unstructured: 41.89%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.58
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF01510Amidase_2 7.34
PF16778Phage_tail_APC 5.50
PF13539Peptidase_M15_4 5.50
PF00959Phage_lysozyme 1.83
PF08281Sigma70_r4_2 1.83
PF08299Bac_DnaA_C 1.83
PF07460NUMOD3 0.92
PF00386C1q 0.92
PF00622SPRY 0.92
PF11651P22_CoatProtein 0.92
PF11160Hva1_TUDOR 0.92
PF11351GTA_holin_3TM 0.92
PF12651RHH_3 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG0593Chromosomal replication initiation ATPase DnaAReplication, recombination and repair [L] 1.83

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms55.96 %
UnclassifiedrootN/A44.04 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000418|P_2C_Liq_1_UnCtyDRAFT_1002779All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Roseobacter → unclassified Roseobacter → Roseobacter sp. AzwK-3b5818Open in IMG/M
3300000418|P_2C_Liq_1_UnCtyDRAFT_1018148Not Available1534Open in IMG/M
3300000418|P_2C_Liq_1_UnCtyDRAFT_1068255Not Available595Open in IMG/M
3300000418|P_2C_Liq_1_UnCtyDRAFT_1084478Not Available516Open in IMG/M
3300000947|BBAY92_10024254All Organisms → cellular organisms → Bacteria → Proteobacteria1651Open in IMG/M
3300000947|BBAY92_12253321All Organisms → Viruses → Predicted Viral1032Open in IMG/M
3300003216|JGI26079J46598_1077224Not Available627Open in IMG/M
3300003216|JGI26079J46598_1108034All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage500Open in IMG/M
3300003427|JGI26084J50262_1017279All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2410Open in IMG/M
3300003427|JGI26084J50262_1043517Not Available1116Open in IMG/M
3300004829|Ga0068515_100690Not Available4331Open in IMG/M
3300004829|Ga0068515_107096All Organisms → cellular organisms → Bacteria1422Open in IMG/M
3300005512|Ga0074648_1075540All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1295Open in IMG/M
3300005512|Ga0074648_1087901All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium1138Open in IMG/M
3300005512|Ga0074648_1134504Not Available783Open in IMG/M
3300005590|Ga0070727_10019781All Organisms → cellular organisms → Bacteria4462Open in IMG/M
3300006025|Ga0075474_10092319All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes984Open in IMG/M
3300006025|Ga0075474_10206268All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium601Open in IMG/M
3300006026|Ga0075478_10151356All Organisms → cellular organisms → Bacteria724Open in IMG/M
3300006027|Ga0075462_10000375Not Available13665Open in IMG/M
3300006027|Ga0075462_10207614All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.588Open in IMG/M
3300006637|Ga0075461_10019771All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales2225Open in IMG/M
3300006793|Ga0098055_1341332Not Available557Open in IMG/M
3300006802|Ga0070749_10029028All Organisms → cellular organisms → Bacteria3464Open in IMG/M
3300006802|Ga0070749_10042009All Organisms → Viruses → Predicted Viral2809Open in IMG/M
3300006802|Ga0070749_10276435Not Available946Open in IMG/M
3300006802|Ga0070749_10547306All Organisms → cellular organisms → Bacteria627Open in IMG/M
3300006867|Ga0075476_10189424All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium753Open in IMG/M
3300006868|Ga0075481_10143211Not Available873Open in IMG/M
3300007539|Ga0099849_1209004Not Available731Open in IMG/M
3300007541|Ga0099848_1024861All Organisms → Viruses → Predicted Viral2528Open in IMG/M
3300007541|Ga0099848_1229389All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales656Open in IMG/M
3300008012|Ga0075480_10038665All Organisms → Viruses → Predicted Viral2854Open in IMG/M
3300008012|Ga0075480_10369360All Organisms → cellular organisms → Bacteria713Open in IMG/M
3300009000|Ga0102960_1000148Not Available24981Open in IMG/M
3300009001|Ga0102963_1041166All Organisms → Viruses → Predicted Viral1919Open in IMG/M
3300009001|Ga0102963_1086517All Organisms → Viruses → Predicted Viral1281Open in IMG/M
3300009001|Ga0102963_1106428All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium1142Open in IMG/M
3300009001|Ga0102963_1156349Not Available917Open in IMG/M
3300009001|Ga0102963_1306914Not Available624Open in IMG/M
3300009124|Ga0118687_10213958All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales706Open in IMG/M
3300009124|Ga0118687_10278619All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes625Open in IMG/M
3300010149|Ga0098049_1030122All Organisms → Viruses → Predicted Viral1766Open in IMG/M
3300010299|Ga0129342_1182871All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium751Open in IMG/M
3300010300|Ga0129351_1109384All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium1106Open in IMG/M
3300016749|Ga0182053_1020910All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium862Open in IMG/M
3300017727|Ga0181401_1007847Not Available3518Open in IMG/M
3300017762|Ga0181422_1066748All Organisms → Viruses → Predicted Viral1142Open in IMG/M
3300017782|Ga0181380_1238880Not Available604Open in IMG/M
3300017783|Ga0181379_1020825All Organisms → cellular organisms → Bacteria → Proteobacteria2653Open in IMG/M
3300017783|Ga0181379_1102873All Organisms → Viruses → Predicted Viral1045Open in IMG/M
3300017813|Ga0188953_10023All Organisms → cellular organisms → Bacteria14613Open in IMG/M
3300017824|Ga0181552_10043470Not Available2673Open in IMG/M
3300017950|Ga0181607_10576179Not Available594Open in IMG/M
3300017951|Ga0181577_10007911Not Available8014Open in IMG/M
3300017951|Ga0181577_10104025All Organisms → Viruses → Predicted Viral1965Open in IMG/M
3300017951|Ga0181577_10823818Not Available558Open in IMG/M
3300017957|Ga0181571_10423637All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.822Open in IMG/M
3300017960|Ga0180429_10691283Not Available687Open in IMG/M
3300017967|Ga0181590_10337826All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1085Open in IMG/M
3300017991|Ga0180434_11071864Not Available604Open in IMG/M
3300018410|Ga0181561_10298230Not Available751Open in IMG/M
3300018420|Ga0181563_10205458Not Available1198Open in IMG/M
3300018424|Ga0181591_11116152Not Available530Open in IMG/M
3300019756|Ga0194023_1005081All Organisms → Viruses → Predicted Viral2639Open in IMG/M
3300019765|Ga0194024_1046623Not Available957Open in IMG/M
3300020166|Ga0206128_1004410All Organisms → cellular organisms → Bacteria → Proteobacteria10998Open in IMG/M
3300021379|Ga0213864_10151150Not Available1172Open in IMG/M
3300021425|Ga0213866_10200853Not Available1035Open in IMG/M
3300021958|Ga0222718_10084837All Organisms → Viruses → Predicted Viral1901Open in IMG/M
3300021958|Ga0222718_10487853Not Available598Open in IMG/M
3300021958|Ga0222718_10538405All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes558Open in IMG/M
3300021959|Ga0222716_10185382Not Available1330Open in IMG/M
3300021959|Ga0222716_10261780Not Available1062Open in IMG/M
3300021959|Ga0222716_10483701All Organisms → cellular organisms → Bacteria700Open in IMG/M
3300021959|Ga0222716_10599573All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes602Open in IMG/M
3300021960|Ga0222715_10429250Not Available716Open in IMG/M
3300021960|Ga0222715_10456897All Organisms → cellular organisms → Bacteria686Open in IMG/M
3300021960|Ga0222715_10513617All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage634Open in IMG/M
3300021960|Ga0222715_10516643All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes631Open in IMG/M
3300021964|Ga0222719_10042901All Organisms → Viruses → Predicted Viral3486Open in IMG/M
3300021964|Ga0222719_10423153Not Available822Open in IMG/M
3300022065|Ga0212024_1022359Not Available1038Open in IMG/M
3300022065|Ga0212024_1057472All Organisms → cellular organisms → Bacteria → Proteobacteria686Open in IMG/M
3300022198|Ga0196905_1171247Not Available552Open in IMG/M
3300022922|Ga0255779_1153420All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium1077Open in IMG/M
3300022923|Ga0255783_10391079All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium525Open in IMG/M
3300022937|Ga0255770_10014319Not Available5928Open in IMG/M
3300023115|Ga0255760_10346510Not Available710Open in IMG/M
3300024301|Ga0233451_10208122All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium826Open in IMG/M
3300024301|Ga0233451_10226484Not Available773Open in IMG/M
3300024319|Ga0228670_1003290Not Available5532Open in IMG/M
3300025608|Ga0209654_1039521All Organisms → Viruses → Predicted Viral1536Open in IMG/M
3300025617|Ga0209138_1092378Not Available910Open in IMG/M
3300025617|Ga0209138_1183174Not Available500Open in IMG/M
3300025636|Ga0209136_1008734Not Available4748Open in IMG/M
3300025636|Ga0209136_1052412All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium1362Open in IMG/M
3300025645|Ga0208643_1057263All Organisms → Viruses → unclassified viruses → Skeletonema virus LDF-2015a1174Open in IMG/M
3300025652|Ga0208134_1096568All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage825Open in IMG/M
3300025671|Ga0208898_1017713All Organisms → Viruses → Predicted Viral3260Open in IMG/M
3300025695|Ga0209653_1009414All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria5375Open in IMG/M
3300025701|Ga0209771_1184715All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium615Open in IMG/M
3300025769|Ga0208767_1275379Not Available509Open in IMG/M
3300025880|Ga0209534_10130646Not Available1365Open in IMG/M
3300025886|Ga0209632_10228036All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes966Open in IMG/M
3300027612|Ga0209037_1101856Not Available701Open in IMG/M
3300029308|Ga0135226_1004855Not Available865Open in IMG/M
3300029345|Ga0135210_1002329All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1370Open in IMG/M
3300034375|Ga0348336_199770Not Available535Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous22.94%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh15.60%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water11.93%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine11.01%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water5.50%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater4.59%
EnviromentalEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental3.67%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater2.75%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment2.75%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater1.83%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.83%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.83%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine1.83%
Marine WaterEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water1.83%
Marine HarborEnvironmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor1.83%
Hypersaline Lake SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment1.83%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment1.83%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface1.83%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment0.92%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.92%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Saline Water0.92%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000418Marine microbial community from Union City, CA, USA - Pond 2C Liquid 1EnvironmentalOpen in IMG/M
3300000947Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92Host-AssociatedOpen in IMG/M
3300003216Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNAEnvironmentalOpen in IMG/M
3300003427Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNAEnvironmentalOpen in IMG/M
3300004829Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVsEnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300005590Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2EnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006868Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007541Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaGEnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300009000Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MGEnvironmentalOpen in IMG/M
3300009001Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MGEnvironmentalOpen in IMG/M
3300009124Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsfEnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010299Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300016749Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011512AT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300017813Saline water viral communities from Saloum River inverse estuary, Senegal ? P2EnvironmentalOpen in IMG/M
3300017824Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017957Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017960Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_S_1 metaGEnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017991Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_2 metaGEnvironmentalOpen in IMG/M
3300018410Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018424Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019756Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MGEnvironmentalOpen in IMG/M
3300019765Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MGEnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300021379Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247EnvironmentalOpen in IMG/M
3300021425Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022065Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)EnvironmentalOpen in IMG/M
3300022198Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022922Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaGEnvironmentalOpen in IMG/M
3300022923Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaGEnvironmentalOpen in IMG/M
3300022937Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaGEnvironmentalOpen in IMG/M
3300023115Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaGEnvironmentalOpen in IMG/M
3300024301Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011504CT (spades assembly)EnvironmentalOpen in IMG/M
3300024319Seawater microbial communities from Monterey Bay, California, United States - 85DEnvironmentalOpen in IMG/M
3300025608Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025617Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025636Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025671Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)EnvironmentalOpen in IMG/M
3300025695Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025701Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_59LU_5_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025880Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)EnvironmentalOpen in IMG/M
3300025886Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)EnvironmentalOpen in IMG/M
3300027612Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300029308Marine harbor viral communities from the Indian Ocean - SRB2EnvironmentalOpen in IMG/M
3300029345Marine harbor viral communities from the Indian Ocean - SCH1EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
P_2C_Liq_1_UnCtyDRAFT_100277963300000418EnviromentalMDQKAIISVLFASVMGLIGWNINTTNELQLAVQRLEIILLSDGMSK*
P_2C_Liq_1_UnCtyDRAFT_101814823300000418EnviromentalMDQKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLSDGMSK*
P_2C_Liq_1_UnCtyDRAFT_106825523300000418EnviromentalMDQKAIISVLFAAVMGLMGWNIQTTNDLQLAVQRLEIILLDDGMSK*
P_2C_Liq_1_UnCtyDRAFT_108447823300000418EnviromentalMDQKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLDDAMAK*
BBAY92_1002425433300000947Macroalgal SurfaceMDTKTIISVLFAAVVGLIGWNIKTTNELQISVARLEYILLNDAMTK*
BBAY92_1225332123300000947Macroalgal SurfaceMDNKAVVSIMSAALIGLLGWNIKTTNELQLSVQRLEIVLLHDAFTK*
JGI26079J46598_107722423300003216MarineMDQKTIISVLFAAVMGLMGWNIKTTNELQLAVQRLEIILLDDGMSK*
JGI26079J46598_110803433300003216MarineMDQKAIISVLFAAVMGLMGWNIKTTNELQLAVQRLEIILL
JGI26084J50262_101727933300003427MarineMDQKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLNDGMSK*
JGI26084J50262_104351723300003427MarineMDWVKPIISILFAAVVSLIAWNIKTTNDLQLKITRMEVILQNIAMEN*
Ga0068515_10069073300004829Marine WaterMDQKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLNDAMIK*
Ga0068515_10709633300004829Marine WaterMDSKTIISVLFAAVIGLIGWNIKTTNELQLAVQRLEIILLDDAMTK*
Ga0074648_107554023300005512Saline Water And SedimentMDTKTIISVLFAAVIGLIGWNIKTTNELQLQVQRLEIILLDDAMTK*
Ga0074648_108790143300005512Saline Water And SedimentMDQKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLNDAMTK*
Ga0074648_113450413300005512Saline Water And SedimentMDQKAIISVLFAAVVALIGWNIKTTNDLQLQVQRLEIILLNDALVK*
Ga0070727_1001978163300005590Marine SedimentMDQKLVTTIVFGALLSLIGWNIKTTNDLQLTVARMEMLLRADALEK*
Ga0075474_1009231933300006025AqueousMDQKAIISVLFAAVMGLIGWNIKTTNELQLSVQRLEIILLNDAMVK*
Ga0075474_1020626833300006025AqueousMDQKAIISVLFAAVMGLIGWNIKTTNELQLSVQRLEIILLNDA
Ga0075478_1015135623300006026AqueousMDQKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLNDALVK*
Ga0075462_1000037583300006027AqueousMDQKAVISVLFAAIMGLIGWNIKTTNELQLRVQRLEIILLNDAFIK*
Ga0075462_1020761423300006027AqueousMDQKAIISVLFAAVMGLIGWNIKTTNELQLSVQRLEIILLNDALVK*
Ga0075461_1001977133300006637AqueousMDQKAIISVLFAAVMGLIGWNIKTTNELQLSVQRLEIILLNDAMTK*
Ga0098055_134133223300006793MarineMDQKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLNDGMAK*
Ga0070749_1002902893300006802AqueousMDQKTIISVLFAAIIGLIGWNIKTTHELTISVSKLEYILLQDAMAK*
Ga0070749_1004200933300006802AqueousMEGKAIIGVLVAALMALATWNLKTTHDLTLAVQRLEIILLNDAMLK*
Ga0070749_1027643533300006802AqueousMDQKAIISVLFAAVIGLIGWNIKTTNELQLAVQRLEIILLNDAMIK*
Ga0070749_1054730613300006802AqueousISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLNDALVK*
Ga0075476_1018942413300006867AqueousMDQKAIISVLFAAVMGLIGWNIKTTNELQLSVQRLEIIL
Ga0075481_1014321113300006868AqueousQKAIISVLFAAVVALIGWNIKTTNDLQLQVQRLEIILLNDAFAK*
Ga0099849_120900433300007539AqueousVVSAVDQKAIMTVLFAAVISLIGWNIKTTNDLQLSVQRLEILLRADAMEN*
Ga0099848_102486143300007541AqueousMEQKAIISVLFAAITAMIGWDIKTTNDLQLRVQRLEIILLNDAFTK*
Ga0099848_122938933300007541AqueousASTKMDTKTIISVLFAAVIGLIGWNIKTTNELQLQV*
Ga0075480_1003866583300008012AqueousMDQKAIISVLFAAVMGLIGWDIKTTNELQLAVQRLEIILLNDALVK*
Ga0075480_1036936033300008012AqueousMDQKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEI
Ga0102960_1000148283300009000Pond WaterMDQKAIISVLFAAVMGLIGWNIKTTNDLQLAVQRLEIILLNDAMIK*
Ga0102963_104116673300009001Pond WaterELMDQKAIISVLFAAVMGLIGWNIKTTNDLQLAVQRLEIILLNDAMIK*
Ga0102963_108651733300009001Pond WaterMDQKAIISVLFAATVGLIGWNIKTTNELQLQVQRLEIILLNDAFAK*
Ga0102963_110642813300009001Pond WaterMDQKVIISVLFAATVGLIGWNIKTTHELTISVSKLEFILLQDAMV
Ga0102963_115634923300009001Pond WaterMDQKSIISVLFAAIIGLIAWNIKTTHELTISVSKLEFILLQDAMVK*
Ga0102963_130691413300009001Pond WaterSVLFAATIGLIAWNIKTTHELTISVSKLEFILLQDAMVK*
Ga0118687_1021395833300009124SedimentMDQKAIISVLFAAVMGLIGWNIKTTNELQLSVQRLEIILLNDALAK*
Ga0118687_1027861923300009124SedimentMDQKAIISVLFAAVIGLIGWNIKTTNDLQLAVQRLEIILLNDAMIK*
Ga0098049_103012243300010149MarineMDNKALVSVLFAAVVGLIGWNINTTNQLQLQVQRLEIILLDDAFAK*
Ga0129342_118287113300010299Freshwater To Marine Saline GradientMDQKAIISVLFAAVVALIGWNIKTTNDLQLQVQRLEIILL
Ga0129351_110938413300010300Freshwater To Marine Saline GradientKAIISVLFAAVVALIGWNIKTTNDLQLQVQRLEIILLNDAFAK*
Ga0182053_102091043300016749Salt MarshMDPKVIISVLFAATVGLIGWNIKTTHELTISVSKLEFILLQDALVK
Ga0181401_100784733300017727SeawaterMSVLFAAVVALIGWNIKTTNDLQLQVQRLEIILLNDALVK
Ga0181422_106674823300017762SeawaterMDQKAIISVLFASVMGLVGWNIKTTNELQLSVQRLEIILLNDALVK
Ga0181380_123888033300017782SeawaterMDQKAIISVFFAAVMGLIGWNIKTTNELQLAVQRLEIILLNDALVK
Ga0181379_102082533300017783SeawaterMSVLFAAVVALIGWNIKTTNDLQLQVQRLEIILLNDALMK
Ga0181379_110287353300017783SeawaterMDQKAIISVLFASVMGLVGWNIKTTNELQLSVQRLEIILLNDALV
Ga0188953_10023153300017813Saline WaterMEKSIISVLIAAMVALIGWNIKTTNELQLAVQRLEILLRADAMEN
Ga0181552_1004347053300017824Salt MarshMDQKVIISVLFAATVGLIGWNIKTTHELTISVSKLEFILLQDALVK
Ga0181607_1057617913300017950Salt MarshDQKVIVSVLFAAVIGLIGWNIKTTHELTISVSKLEFILLQDAMVK
Ga0181577_10007911233300017951Salt MarshMDQKAIISVLFAATIGLIAWNIKTTHELTISVSKLEFILLQDAMVK
Ga0181577_1010402523300017951Salt MarshMDQKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLNDALVK
Ga0181577_1082381813300017951Salt MarshMDQKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLNDAMTK
Ga0181571_1042363723300017957Salt MarshMDQKAIISVLFAAVMGLIGWNIKTTNELQLSVQRLEIILLNDALVK
Ga0180429_1069128333300017960Hypersaline Lake SedimentMEKTLLPILFAAVVGLIGWNIKTTNELQITVARLEIILNAIAMEN
Ga0181590_1033782633300017967Salt MarshVDQKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLNDALVK
Ga0180434_1107186423300017991Hypersaline Lake SedimentVSAVDQKAIMTVLFAAVISLIGWNIKTTNDLQLSVQRLEILLRADAMEN
Ga0181561_1029823023300018410Salt MarshDQKVIISVLFAATVGLIGWNIKTTHELTISVSKLEFILLQDALVK
Ga0181563_1020545823300018420Salt MarshMDQKSIISVLFAAIIGLIAWNIKTTHELTISVSKLEFILLQDAMVK
Ga0181591_1111615223300018424Salt MarshMDPKTIISVLFAAIIGLIGWNIKTTHELTISVSKLEFILLQDAMVK
Ga0194023_100508153300019756FreshwaterMDQKAIISVLFAAVIGLIGWNIKTTNELQLAVQRLEIILLNDAMIK
Ga0194024_104662343300019765FreshwaterMDQKAVISVLFAAIMGLIGWNIKTTNELQLQVQRLEIILLNDAFTK
Ga0206128_1004410113300020166SeawaterVDQKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLDDAMAK
Ga0213864_1015115043300021379SeawaterMDQKAIISVLFAAVVALIGWNIKTTHELTLQVQKLEVILLNDAFAK
Ga0213866_1020085343300021425SeawaterMMDQKAIISVLFAAVMGLIGWNIKTTNELQLSVQRLEIILLND
Ga0222718_1008483743300021958Estuarine WaterMDQKAIISVLFAAVMGLIGWNIKTTNELQLSVQRLEIILLNDALAK
Ga0222718_1048785323300021958Estuarine WaterKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLDDAMAK
Ga0222718_1053840513300021958Estuarine WaterMDQKAIISVLFAAVMGLIGWNIKTTNDLQLAVQRLEIILLNDAMIK
Ga0222716_1018538223300021959Estuarine WaterMDQKAVISVLFAAIMGLIGWNIKTTNELQLRVQRLEIILLNDAFTK
Ga0222716_1026178033300021959Estuarine WaterMDTNTMISVLFAAVVRLIGWNIKTTNELQISVARLEYILLNDATAK
Ga0222716_1048370133300021959Estuarine WaterMDQRAVISVLFAAITAMIGWDIKTTNDLQLRVQRLEIILLNDAFIK
Ga0222716_1059957333300021959Estuarine WaterAAVMGLIGWNIKTTNELQLSVQRLEIILLNDAMVK
Ga0222715_1042925023300021960Estuarine WaterMDQKVIISVLFAAVIGLIGWNIKTTHELTISVSKLEFILLQDAMVK
Ga0222715_1045689723300021960Estuarine WaterMDQKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLNDAMIK
Ga0222715_1051361713300021960Estuarine WaterMDQKVIISVLFAATVGLIGWNIKTTHELTISVSKLEFILLQDAMVK
Ga0222715_1051664323300021960Estuarine WaterMDQKAIISVLFAAVMGLIGWNIKTTNELQLSVQRLEIILLNDAMVK
Ga0222719_1004290153300021964Estuarine WaterMDQKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLDDALAK
Ga0222719_1042315323300021964Estuarine WaterMDQKAIISVLFAAVMGLIGWNIKTTNELQLSVQRLEIILLSDALVK
Ga0212024_102235933300022065AqueousMDQKAIISVLFAAVMGLIGWNIKTTNELQLSVQRLEIILLNDAMTK
Ga0212024_105747223300022065AqueousMDQKAVISVLFAAIMGLIGWNIKTTNELQLRVQRLEIILLNDAFIK
Ga0196905_117124723300022198AqueousMEQKAIISVLFAAITAMIGWDIKTTNDLQLRVQRLEIILLNDAFTK
Ga0255779_115342013300022922Salt MarshMDQKVIISVLFAATVGLIGWNIKTTHELTISVSKLE
Ga0255783_1039107913300022923Salt MarshMDPKVIISVLFAATVGLIGWNIKTTHELTISVSKLEFILLQDAL
Ga0255770_10014319123300022937Salt MarshMEKSILPILIAALVSLIGWNIKTTNDLQLSVQRLEI
Ga0255760_1034651033300023115Salt MarshILPILIAALVSLIGWNIKTTNDLQLSVQRLEILLRADAMEN
Ga0233451_1020812213300024301Salt MarshMDQKVIISVLFAATVGLIGWNIKTTHELTISVSKLEFILLQDAL
Ga0233451_1022648413300024301Salt MarshTGTAQVMDQKVIISVLFAATVGLIGWNIKTTHELTISVSKLEFILLQDALVK
Ga0228670_100329053300024319SeawaterMDQKAIISVLFAAVMGLMGWNIQTTNELQLAVQRLEIILLDDGMSK
Ga0209654_103952143300025608MarineMDQKAIISVLFAAVMGLIGWNIKTTNELQLSVQRLEIILLDDAMAK
Ga0209138_109237833300025617MarineMEKSIMSVLIAAMVALIGWNISTTNELQLAVQRLEILLRADAMEN
Ga0209138_118317413300025617MarineCMDQKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLNDGMSK
Ga0209136_100873483300025636MarineMDQKTIISVLFAAVMGLMGWNIKTTNELQLAVQRLEIILLDDGMSK
Ga0209136_105241223300025636MarineMDQKAIISVLFAAVMGLMGWNIKTTNELQLAVQRLEIILLDDGMSK
Ga0208643_105726313300025645AqueousFPLMDQKAITTVLFASVISLIGWNIKTTNDLQLSVARLEILLRADAMEK
Ga0208134_109656823300025652AqueousMDQKAITTVLFASVISLIGWNIKTTNDLQLSVARLEILLRADAMEK
Ga0208898_101771333300025671AqueousMEGKAIIGVLVAALMALATWNLKTTHDLTLAVQRLEIILLNDAMLK
Ga0209653_100941433300025695MarineMDWVKPIISILFAAVVSLIAWNIKTTNDLQLKITRMEVILQNIAMEN
Ga0209771_118471533300025701MarineMDQKAIISVLFAAVMGLMGWNIKTTNELQLAVQRL
Ga0208767_127537923300025769AqueousMDQKLVTTIVFGALLSLIGWNIKTTNDLQLTVARMEMLLRADALEK
Ga0209534_1013064613300025880Pelagic MarineVDQKAIASVLFAAVIGLIGWNIKTTNELQLAVQRL
Ga0209632_1022803633300025886Pelagic MarineVDQKAIASVLFAAVIGLIGWNIKTTNELQLAVQRLEIILLSDAIEK
Ga0209037_110185623300027612MarineMDQKAIISVLFAAVMGLIGWNIKTTNELQLAVQRLEIILLNDGMSK
Ga0135226_100485533300029308Marine HarborPEETLHCFPVTIGLIGWNIKTTNELQLAVQRLEIILLNDAMTK
Ga0135210_100232923300029345Marine HarborMDTKAIISVLFAAVIGLIGWNIKTTNELQLQVQRLEIILLNDAMTK
Ga0348336_199770_418_5343300034375AqueousVLVAALMALATWNLKTTHDLTLAVQRLEIILLNDAMLK

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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