NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F089060

Metagenome / Metatranscriptome Family F089060

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F089060
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 63 residues
Representative Sequence VSVLDPPAQIDDGDAVAVTAIDEPTDTVTEAVPEHPLEFVPVTEYVVVEVGLTVILAVVCPVLH
Number of Associated Samples 41
Number of Associated Scaffolds 79

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 22.02 %
% of genes near scaffold ends (potentially truncated) 19.27 %
% of genes from short scaffolds (< 2000 bps) 96.33 %
Associated GOLD sequencing projects 29
AlphaFold2 3D model prediction Yes
3D model pTM-score0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (66.972 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(41.284 % of family members)
Environment Ontology (ENVO) Unclassified
(71.560 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(71.560 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 4.35%    β-sheet: 0.00%    Coil/Unstructured: 95.65%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 79 Family Scaffolds
PF05593RHS_repeat 1.27
PF04545Sigma70_r4 1.27

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 79 Family Scaffolds
COG3209Uncharacterized conserved protein RhaS, contains 28 RHS repeatsGeneral function prediction only [R] 1.27

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A66.97 %
All OrganismsrootAll Organisms33.03 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002906|JGI25614J43888_10086721Not Available857Open in IMG/M
3300005334|Ga0068869_101636240Not Available574Open in IMG/M
3300005533|Ga0070734_10258162Not Available999Open in IMG/M
3300005533|Ga0070734_10258162Not Available999Open in IMG/M
3300005537|Ga0070730_10178963Not Available1424Open in IMG/M
3300005537|Ga0070730_10714348Not Available634Open in IMG/M
3300005537|Ga0070730_10714348Not Available634Open in IMG/M
3300005537|Ga0070730_11050552All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium507Open in IMG/M
3300005537|Ga0070730_11050552All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium507Open in IMG/M
3300005618|Ga0068864_100674036Not Available1008Open in IMG/M
3300005618|Ga0068864_101672381All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes641Open in IMG/M
3300005618|Ga0068864_101672381All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes641Open in IMG/M
3300005841|Ga0068863_101768861Not Available628Open in IMG/M
3300005841|Ga0068863_101978060Not Available593Open in IMG/M
3300005841|Ga0068863_102424678Not Available534Open in IMG/M
3300006237|Ga0097621_102327888All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium513Open in IMG/M
3300006358|Ga0068871_102260022Not Available518Open in IMG/M
3300006881|Ga0068865_101766189All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes558Open in IMG/M
3300009093|Ga0105240_10396279Not Available1556Open in IMG/M
3300009093|Ga0105240_10396279Not Available1556Open in IMG/M
3300009093|Ga0105240_10396279Not Available1556Open in IMG/M
3300009093|Ga0105240_10396279Not Available1556Open in IMG/M
3300009093|Ga0105240_10396279Not Available1556Open in IMG/M
3300010397|Ga0134124_10611854Not Available1068Open in IMG/M
3300010397|Ga0134124_12206427Not Available590Open in IMG/M
3300010397|Ga0134124_12403482All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales568Open in IMG/M
3300010397|Ga0134124_13015227Not Available515Open in IMG/M
3300010397|Ga0134124_13188015All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes502Open in IMG/M
3300010400|Ga0134122_10146792Not Available1914Open in IMG/M
3300010400|Ga0134122_10407313All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1203Open in IMG/M
3300010400|Ga0134122_11989431Not Available619Open in IMG/M
3300010401|Ga0134121_10629614All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1008Open in IMG/M
3300010401|Ga0134121_12219392Not Available586Open in IMG/M
3300010401|Ga0134121_13251028Not Available503Open in IMG/M
3300010403|Ga0134123_11743908All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes675Open in IMG/M
3300010403|Ga0134123_12744549All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae561Open in IMG/M
3300012203|Ga0137399_11009499Not Available701Open in IMG/M
3300012203|Ga0137399_11091273Not Available672Open in IMG/M
3300012207|Ga0137381_10581329All Organisms → cellular organisms → Bacteria976Open in IMG/M
3300012683|Ga0137398_10283645All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1110Open in IMG/M
3300012683|Ga0137398_10283645All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1110Open in IMG/M
3300012683|Ga0137398_10283645All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1110Open in IMG/M
3300012683|Ga0137398_10283645All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1110Open in IMG/M
3300012683|Ga0137398_10283645All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1110Open in IMG/M
3300012683|Ga0137398_10309492Not Available1063Open in IMG/M
3300012683|Ga0137398_10839485All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes642Open in IMG/M
3300012683|Ga0137398_10839485All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes642Open in IMG/M
3300012683|Ga0137398_10863012Not Available632Open in IMG/M
3300012683|Ga0137398_10863012Not Available632Open in IMG/M
3300012683|Ga0137398_10863012Not Available632Open in IMG/M
3300012683|Ga0137398_11184553Not Available523Open in IMG/M
3300012683|Ga0137398_11184553Not Available523Open in IMG/M
3300012683|Ga0137398_11238298Not Available508Open in IMG/M
3300012683|Ga0137398_11238298Not Available508Open in IMG/M
3300012922|Ga0137394_11563033Not Available517Open in IMG/M
3300012924|Ga0137413_11007596Not Available653Open in IMG/M
3300012924|Ga0137413_11007596Not Available653Open in IMG/M
3300012924|Ga0137413_11257820Not Available592Open in IMG/M
3300012924|Ga0137413_11358572All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes572Open in IMG/M
3300012924|Ga0137413_11358572All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes572Open in IMG/M
3300012924|Ga0137413_11434480All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes559Open in IMG/M
3300012925|Ga0137419_10966110Not Available704Open in IMG/M
3300012925|Ga0137419_11640302Not Available547Open in IMG/M
3300012927|Ga0137416_12190542Not Available508Open in IMG/M
3300012929|Ga0137404_11870855All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes559Open in IMG/M
3300012930|Ga0137407_11649704Not Available611Open in IMG/M
3300012930|Ga0137407_12406143Not Available503Open in IMG/M
3300012944|Ga0137410_10850709Not Available769Open in IMG/M
3300012944|Ga0137410_10850709Not Available769Open in IMG/M
3300012944|Ga0137410_11340277Not Available620Open in IMG/M
3300012944|Ga0137410_11700176Not Available555Open in IMG/M
3300012984|Ga0164309_11949224Not Available503Open in IMG/M
3300015241|Ga0137418_10293555Not Available1362Open in IMG/M
3300015241|Ga0137418_10857892All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria673Open in IMG/M
3300015242|Ga0137412_10107850Not Available2262Open in IMG/M
3300015242|Ga0137412_10891675Not Available645Open in IMG/M
3300015245|Ga0137409_10088928All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → unclassified Marinilabiliales → Marinilabiliales bacterium2876Open in IMG/M
3300015245|Ga0137409_10088928All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → unclassified Marinilabiliales → Marinilabiliales bacterium2876Open in IMG/M
3300015245|Ga0137409_10647362All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium HGW-Bacteroidetes-6889Open in IMG/M
3300015245|Ga0137409_11297224All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → unclassified Marinilabiliales → Marinilabiliales bacterium571Open in IMG/M
3300015264|Ga0137403_11064954Not Available655Open in IMG/M
3300020070|Ga0206356_10085205Not Available513Open in IMG/M
3300020579|Ga0210407_11317518Not Available539Open in IMG/M
3300020579|Ga0210407_11317518Not Available539Open in IMG/M
3300020580|Ga0210403_10081744Not Available2605Open in IMG/M
3300020580|Ga0210403_10579857Not Available907Open in IMG/M
3300020580|Ga0210403_10579857Not Available907Open in IMG/M
3300025913|Ga0207695_10499561Not Available1098Open in IMG/M
3300025913|Ga0207695_10499561Not Available1098Open in IMG/M
3300025913|Ga0207695_10499561Not Available1098Open in IMG/M
3300025913|Ga0207695_10499561Not Available1098Open in IMG/M
3300025913|Ga0207695_10499561Not Available1098Open in IMG/M
3300025938|Ga0207704_11839952All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes521Open in IMG/M
3300026088|Ga0207641_10738278All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → unclassified Sphingobacteriales → Sphingobacteriales bacterium UPWRP_1971Open in IMG/M
3300026088|Ga0207641_11233095Not Available748Open in IMG/M
3300026088|Ga0207641_11233095Not Available748Open in IMG/M
3300026088|Ga0207641_11761474Not Available621Open in IMG/M
3300026088|Ga0207641_11778306Not Available618Open in IMG/M
3300026095|Ga0207676_10861199Not Available887Open in IMG/M
3300026095|Ga0207676_12587590All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma arboris504Open in IMG/M
3300026116|Ga0207674_10996722All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium807Open in IMG/M
3300026116|Ga0207674_11498168All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes644Open in IMG/M
3300026116|Ga0207674_12224683Not Available511Open in IMG/M
3300026116|Ga0207674_12224683Not Available511Open in IMG/M
3300026304|Ga0209240_1149460Not Available733Open in IMG/M
3300027826|Ga0209060_10486546Not Available560Open in IMG/M
3300027857|Ga0209166_10298940All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae847Open in IMG/M
3300027857|Ga0209166_10298940All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae847Open in IMG/M
3300028536|Ga0137415_11485124Not Available503Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil41.28%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil11.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere11.93%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil9.17%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere9.17%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.59%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere3.67%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.75%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.83%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere1.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.92%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.92%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002906Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cmEnvironmentalOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005533Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1EnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300020070Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300027826Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25614J43888_1008672133300002906Grasslands SoilDVAPVAVSVLDPPEQIVAGDALAVTVMDEPTDTVTDAVPEHPLAFVPVTEYVVVEVGLTVMLSVVWPVLH*
Ga0068869_10163624023300005334Miscanthus RhizosphereVAPLAVNVEDPPEHIDDGEAEAVTLGAVPTETVTLTVFEQPLEFVPVTEYVVVEDGLTVILA
Ga0070734_1025816233300005533Surface SoilVSVLDPPAQIDAGDAVAATVIDDPTETVTDAVPEQPEEFVPVTEYVVVEVGLTVMLAVV*
Ga0070734_1025816243300005533Surface SoilVLEPPAQMDAGDAVAATVIDDPTETVTDAVPEQPDEFVPVTEYVVVDVGLTVILAVVSPVLH*
Ga0070730_1017896333300005537Surface SoilVAPLAVRVLEPPAQIAEGEAVAVTFGEAPTDTVTDAVFEQPLELVPVTEYVVVEPGLTTMLAVVWPVLH*
Ga0070730_1071434813300005537Surface SoilVAPLAVRVLEPPAQIVLSEAVAETFGELPTETVIDAVFEQPLEFVPVTEYVVEELGLTVILA
Ga0070730_1071434833300005537Surface SoilVAPPAVRVLEPPAQIVDGDAVAVTFGELPTETVIDAVFEQPLEFVPVTEYVVEELGLTVILAVVSPVLH*
Ga0070730_1105055213300005537Surface SoilVAPLAVIVLEAPEHIAWGEALAVTSKPLPTDTVTLAVPEHPLELVPVTEYVVVELGFTVILAVVSPVLH*
Ga0070730_1105055223300005537Surface SoilVLDPPGHIAVGEAVAATVRDEPTETVTVAVPEHPLELVPVTEYVVVAVGLTVILAVVWPVLH*
Ga0068864_10067403613300005618Switchgrass RhizosphereVAPLAVNVDEAPAQIDEGDAVAETVIDEPTETVTDAVREQPLEFVPVTEYVVVEVGLTVMLAVV*
Ga0068864_10167238123300005618Switchgrass RhizosphereVAVSVLDPPGQIDAGDAVAATLRDEPTVTVTDAVPEQPLAFVPVTEYVVVEVGLTVILAVVCPVLHW*
Ga0068864_10167238133300005618Switchgrass RhizosphereVSVEDPPAQIVAGDAVAATVMDEPTVTVTDAVPEHPLAFVPVTEYVVVEVGLTVMLAVVCPVLH*
Ga0068863_10176886123300005841Switchgrass RhizosphereVAPLAVSVLDPPEQIDAGDAVAVTVIDEPTETVTEAVPEHPLELVPVTEYVVVEPGLTVMLAVVWPVFH*
Ga0068863_10197806033300005841Switchgrass RhizosphereVAPVAVKVEEPPTHIEEGEAVAVTLGKVPTDTVTVAVPEHPLAFVPVTEYVVVDVGLTVMLAVVWPVFHW*
Ga0068863_10242467813300005841Switchgrass RhizosphereVDDPPGQTDPGDAVALTFGKAPTDTVTDAVFEQPLEFVPVTVYVVVDVGLTVMLAVVCPVLH*
Ga0097621_10232788823300006237Miscanthus RhizosphereVSVLDPPGQIVAGDAVAATVIDEPTETVTDATPEHPLAFVPVTEYVVVEVGFTVMLAVVCPVLH*
Ga0068871_10226002233300006358Miscanthus RhizosphereVAPLAVNVDDPPEHIDVGDAVAVTFGAVPTETVTDTVFEQPLEFVPVTEYVVVDVGLTVMLAVVCPVLH*
Ga0068865_10176618933300006881Miscanthus RhizosphereLAVSVLDPPGQIVAGDAVAATVIDEPTETVTDATPEHPLAFVPVTEYVVVEVGFTVMLAVVCPVLH*
Ga0105240_1039627923300009093Corn RhizosphereVLDPPAQIVLGEAVAVTFGEEPTETVTETVFEQPLEFVPVTEYVVVEVGLTVMLVVVSPVLH*
Ga0105240_1039627933300009093Corn RhizosphereVLDPPEQIVEGDAVAVTFGVGPTETVTETVFEQPLEFVPVTEYEVVEFGLTVMLAVVSPVLH*
Ga0105240_1039627943300009093Corn RhizosphereVAVSVLDPPGQIDAGDAVAVTAMDEPTVTVTDAVPEQPLEFVPVTEYEVVEVGLTMILAVVSPVFH*
Ga0105240_1039627953300009093Corn RhizosphereVAPVAVSVLDPPGQIEAGDAVAVTAMDEPTVTVTDAVPEHPLAFVPVTEYVVVEVGLTVMLAVVCPVFH*
Ga0105240_1039627963300009093Corn RhizosphereVAPVAVSVLDPPGQIDAGDAVAVTVMDEPTVTVTEAVPEHPLAFVPVTEYVVVEVGLTVMLAVVWPVLH*
Ga0134124_1061185413300010397Terrestrial SoilVQIVAGDAVAVTVRDEPTVTVTDAVPEQPLAFVPVTEYVVVEVGLTVMLAVVWPVFH*
Ga0134124_1220642713300010397Terrestrial SoilVSVLDPPAQIDDGDAVAVTAIDEPTDTVTEAVPEHPLEFVPVTEYVVVEVGLTVILAVVCPVLH*
Ga0134124_1240348213300010397Terrestrial SoilVSVLDPPAQIDAGDAVAVTVIDEPTETVTDDVFEQPLELVPVTEYVVVEDGLTVMLAVVAPVLHW*
Ga0134124_1301522713300010397Terrestrial SoilVLEPPEHIDAGDAVAATVRDEPTVTVTVATFEQPPELVPVTEYVVVEDGFTVIFAVV*
Ga0134124_1318801523300010397Terrestrial SoilMVAGEAVAETVMDEPTETVTDAVPEQPPEFVPVTEYVVVDVGLTVMLAVVCPVFH*
Ga0134122_1014679213300010400Terrestrial SoilMDAGDADAETVRDEPTETVTEAVREQPLALVPVTEYVVVDVGLTVMLAVVCPVFH*
Ga0134122_1040731343300010400Terrestrial SoilAVSVLDPPGQIDAGEAVAVTFGKALTETVTDATPEHPLAFVPVTEYVVVEVGFTVMLAVVCPVLH*
Ga0134122_1198943113300010400Terrestrial SoilVDEPPVHIVEGDAVTVTFGEEPTETVTLTVFEQPLEFVPVTEYVVVVVGLTVILAVV*
Ga0134121_1062961433300010401Terrestrial SoilVHIVEGDAVTVTFGEEPTETVTLTVFEQPLEFVPVTEYVVVVVGLTVILAVV*
Ga0134121_1221939223300010401Terrestrial SoilVAVSVLKPPVHIDAGEAVAETVIEEPTVTVTDAVPEQPLAFVPVTEYVVVEPGLTVILAVVCPVFH*
Ga0134121_1325102823300010401Terrestrial SoilVLGDAVAETVGVGFTVTVALADPEQPPEFVPVTEYVGVELGLTVMLAVVCPVLHW*
Ga0134123_1174390813300010403Terrestrial SoilVRVLDPPAQIDVGDAVAVTVIDDPTETVTEAVFEQPLEFVPVTEYVVVELGLTVMLAVVCPVLQR*
Ga0134123_1274454923300010403Terrestrial SoilLAVSVLDPPAQIVAGDAVAATVIDEPTETVTDATPEHPLAFVPVTKYVVVEVGLTVILAVVCPVLH*
Ga0137399_1100949913300012203Vadose Zone SoilVAVRVLEPPVQIVVGDAVAETFSEVPTETATEAVPEQPLELVPVTEYVVVVEGLTVILAVVSPVFH*
Ga0137399_1109127313300012203Vadose Zone SoilVVAPLAVIVLEDPEHIEEGEAVAVTLRPEPTDTVTEAVPEQPLEFVPVTEYVVVELGLTVILAVVCPVFH*
Ga0137381_1058132943300012207Vadose Zone SoilAGDAVAVTVMDEPTETVTEAVPEHPLEFVPVTEYVVVEVGLTVILAVVCPVLH*
Ga0137398_1028364513300012683Vadose Zone SoilVAPVAVIVVDPPAQIDAGDTVAETVIDAPTETVTEAVFEQPLAFVPVTEYVVVEPGLTVM
Ga0137398_1028364523300012683Vadose Zone SoilVDEPPAQIEDGEAEAVTLGKALTDTVTEAVPEQPLALVPVTEYVVVEPGLTVILAVVCPVLH*
Ga0137398_1028364533300012683Vadose Zone SoilVLDPPAQIDVGDAVAVTAMDEPTETVTEDVFEQPLALVPVTEYVVVEPGLTVMLAVVCPVLH*
Ga0137398_1028364543300012683Vadose Zone SoilMEAGDAVAVTVIDEPTETVTEAVPEQPLEFVPVTEYVVVDVGLTVILAVVCPVLH*
Ga0137398_1028364553300012683Vadose Zone SoilMEAGDAVAVTVIDEPTETVTEAVPEQPLEFVPVTEYVVVEPGLTVMLAVVCPVLH*
Ga0137398_1030949223300012683Vadose Zone SoilMVLEDPEQMVEGDAVAVTVKPLPTETVTDAVPEQPLELVPVTEYVVVEPGLTVILDVVSPVLH*
Ga0137398_1083948523300012683Vadose Zone SoilMLEGDAVAAIVSDEPTETFTESLPEQPPELVPVTEYVVVEPGLTVIVAVVSPVLH*
Ga0137398_1083948533300012683Vadose Zone SoilVIVLEDPEHMVEGEAVAVTVKPLPTDTVTDAVPEHPLELVPVTEYVVVEAGLTIMLAVVSPVFQ*
Ga0137398_1086301213300012683Vadose Zone SoilVLDPPAHIDAGDAVAVTVIDEPTETVTEAVPEHPLEFVPVTEYEVVEVGLTVMLAVVCPVLH*
Ga0137398_1086301223300012683Vadose Zone SoilVAPLAVSVLDPPAHIDAGDAVALTVIDEPTETVTEAVPEQPLELVPVTEYVVVEVGLTVMLAVVCPVLH*
Ga0137398_1086301233300012683Vadose Zone SoilEAVAVTVIDEPTETVTEAVPEHPLEFVPVTEYVVVEVGLTVMLAVVCPVLH*
Ga0137398_1118455313300012683Vadose Zone SoilVSVLDPPTQIDAGDAVAVTVIDDPTETVTEAVFEQPLEFVPVTEYVVVEPGLTVMLAVV*
Ga0137398_1118455323300012683Vadose Zone SoilVSVDEPPAQIVVGDAEAVTFGKGLTETVTEAVPEHPLEFVPVTEYVVVELGLTVMLAVVCPVLH*
Ga0137398_1123829813300012683Vadose Zone SoilVAPVAVIVVDPPVQMDAGDAVAVTVMDEPTETVTEAVFEQPLALVPVTEYVVVEPGLTVMLAVVCPVFH*
Ga0137398_1123829823300012683Vadose Zone SoilVSVDEPPAQIEEGEAEAVTLGKALTVTVTEAVPEQPLALVPVTEYVVVEPGLTVILAVVCPVLH*
Ga0137394_1156303313300012922Vadose Zone SoilVSVDEAPAQIALGDAVAVTFGEVLTDTVTEAVLEQPLEFVPVTEYVVVEVGLTVILAVVCPVLH*
Ga0137413_1100759613300012924Vadose Zone SoilVLDPPAQIDAGEAVVVTVIDDPTETVIDAVFEQPLELVPVTEYVVVEPGLTIMLAVVCPVLH*
Ga0137413_1100759623300012924Vadose Zone SoilVLDPPAQIAAGDAFATTEIDDPTETVTDAVFEQPLEFVPVTLYVVVALGLTVILAVV*
Ga0137413_1125782033300012924Vadose Zone SoilMLEGDAVAAMVSDEPTETVTESLPEHPPELVPVTEYVVVEPGLTVIVAVVSPVLH*
Ga0137413_1135857223300012924Vadose Zone SoilMDAGEAVAVTVIDEPTETVTEAVPEHPLEFVPVTEYVVVDVGLTVILAVVCPVLH*
Ga0137413_1135857233300012924Vadose Zone SoilMDAGDAVAVTVIDEPTETVTDAVPEQPLEFVPVTEYVVVEPGLTVMLAVVCPVLH*
Ga0137413_1143448023300012924Vadose Zone SoilVSVLEPPVQIVAGDAVAETFSEAPTETVTVAVPEHPLAFVPVTEYVVVELGLTVMLAVV*
Ga0137419_1096611013300012925Vadose Zone SoilVSVLDPPAQIDVGDAVAVTIRDEPTTAVTEAVREQPLELVPVTEYIVVELGLTVMLAVVCPLLPPQTVLVVG*
Ga0137419_1164030233300012925Vadose Zone SoilVSVLDPPEQIVAGDALAVTVMDDPTDTVTDAVPEHPLAFVPVTEYVVVEVGLTVMLSVVWPVLH*
Ga0137416_1219054233300012927Vadose Zone SoilEAGDAVAATVIDEPTETVTEAVPEQPLEFVPVTEYVVVDVGLTVMLAVVCPVFH*
Ga0137404_1187085513300012929Vadose Zone SoilLDPPAHMDAGDAVAVTVIEEPTDTVTDADPEQPLEFVPVTEYVVVEVGLTVILAVVCPVFH*
Ga0137407_1164970413300012930Vadose Zone SoilVSVLDPPAHIDAGDAVAVTVIEEPTDTVTDADPEQPLEFVPVTEYVVVEVGLTVILAVVCPVFH*
Ga0137407_1240614323300012930Vadose Zone SoilPPAQIEDGDAVAVTLGKELTATITEAVPEHPLELVPVTEYVVVEPGLTVILDVVSPVLH*
Ga0137410_1085070913300012944Vadose Zone SoilVSVLDPPAQIVAGDAVAVTARAEPTETVTVPVPEHPPELVPVTEYVVVEVGLTVMLAVVCPVFH*
Ga0137410_1085070923300012944Vadose Zone SoilDPPAQIDAGEAVAATASDEPTETVTEAVPVQPPEFVPVTEYVVVEVGLTVMLAVVCPVFH
Ga0137410_1134027713300012944Vadose Zone SoilVSVLEPPVQIVVGDAVAETFSEVPTETATEAVPEQPLELVPVTEYVVVVEGLTVILAVVCPVFH*
Ga0137410_1170017613300012944Vadose Zone SoilVRVLDPPAQIDAGDAAAVTVIDDPTETVTEAVFEQPLEFVPVTEYVVVEPGLTVMLAVV*
Ga0164309_1194922413300012984SoilVRTLDVPGHSNGSDADACTFSDDPTVTVTEAVPEHPLAFVPVTEYVGVEVGLTDMLAVVAPVLH*
Ga0137418_1029355513300015241Vadose Zone SoilVAPLAVSVLDPPAQIDVGDAVAVTIMDEPTTAVTEAVREQPLELVPVTEYIVVELGLTVMLEVVCPLLPPQTVLVVG*
Ga0137418_1085789213300015241Vadose Zone SoilVIVLEDPEHMVEGEAVAVTVKPLPTDTVTDAVPEHPPEVVPVTEYVVVEAGLTVMLAVVSPVFQR*
Ga0137412_1010785043300015242Vadose Zone SoilMLAVVSPVFHRYEVAPLAVSVLDPPLQMDAGEAVAVTVIDEPTETVTEAVPEQPLEFAPVTEYVVVEVGLTVMLSVVWPVLH*
Ga0137412_1089167523300015242Vadose Zone SoilVLEPPVQIDAGEAEAATVIDEPTVTVTEAVPEHPLEFVPVTEYAVVDVGLTVMLAVVCPVLHW*
Ga0137409_1008892823300015245Vadose Zone SoilVAVSVLDPPAQIDAGDAVAVTVIDEPTETVTEAVPEHPLEFVPVTEYVVVEVGLTAILAEVAPLLHT*
Ga0137409_1008892843300015245Vadose Zone SoilVSVLEPPVQIVVGDAVAETFSEVPTETATEAVPEQPLELVPVTEYVVVEPGLTVMLAVV*
Ga0137409_1064736223300015245Vadose Zone SoilMVLEDPEQMVEGDAVAVTVRPFPTATVTDAVPEHPLALVPVTVYVVVEAGLTVMLAVVSPVFHW*
Ga0137409_1129722413300015245Vadose Zone SoilDALAVTVRFDPTETVTEAVPEQPLELVPVTEYLFVDTGITEMLAVVSPVFH*
Ga0137403_1106495413300015264Vadose Zone SoilMDAGDAVAVTVIEEPTDTVTDADPEQPLEFVPVTEYVVVEVGLTVILAVVCPVFH*
Ga0206356_1008520523300020070Corn, Switchgrass And Miscanthus RhizosphereVAPLAVNVDEAPVQIDEGDAVAETVIDEPTETVTDAVREQPLEFVPVTEYVVVELGLTVILAVVCPVLH
Ga0210407_1131751813300020579SoilVAVSVDEPPAQIDAGEAVAVTVMDEPTETVTEAVPGQPLEFVPVTEYVVVEVGLTVILAVASPVLH
Ga0210407_1131751823300020579SoilMSVLDPPGQIEAGDAAAVTFGEELTATVTDAVLEQPLEFVPVTEYVAVVVGLTVILTVVCPVLQT
Ga0210403_1008174483300020580SoilVLDPPVQIVEGDAAAVTFGDEPTETVTETVVEHPFEFVPVTEYVVVEVGFTVILAVVCPVFH
Ga0210403_1057985733300020580SoilVLNPPEQIAEGDAVAVTFGDDPTETVTETVVEHPLEFVPVTEYVVVEVGLTEMLAVVSPVLH
Ga0210403_1057985743300020580SoilVSVDEPPEQIVDGDAEAVTFGVVPTETVTKTVFEHPLEFVPVTEYVVVEVGLTVILAVVSPVLH
Ga0207695_1049956113300025913Corn RhizosphereVSILDPPEQIVAGDAVAVTVSDEPTVTVTEAVPEQPLAFVPVTEYVVVEVGLTVMLAVVWPVLH
Ga0207695_1049956123300025913Corn RhizosphereVAPVAVSVLDPPGQIDAGDAVAVTVMDEPTVTVTEAVPEHPLAFVPVTEYVVVEVGLTVMLAVVWPVLH
Ga0207695_1049956133300025913Corn RhizosphereVAPVAVSVLDPPGQIEAGDAVAVTAMDEPTVTVTDAVPEHPLAFVPVTEYVVVEVGLTVMLAVVCPVFH
Ga0207695_1049956143300025913Corn RhizosphereVAVSVLDPPGQIDAGDAVAVTAMDEPTVTVTDAVPEQPLEFVPVTEYEVVEVGLTMILAVVSPVFH
Ga0207695_1049956153300025913Corn RhizosphereVLDPPEQIVEGDAVAVTFGVGPTETVTETVFEQPLEFVPVTEYEVVEFGLTVMLAVVSPVLH
Ga0207704_1183995223300025938Miscanthus RhizosphereVSVLEPPAQIDAGDAVAVTAIDEPTETVTEALPEHPLEFVPVTEYVVVEVGLTVILAVV
Ga0207641_1073827823300026088Switchgrass RhizosphereVAPLAVNVDEAPAQIDEGDAVAETVIDEPTETVTDAVREQPLEFVPVTEYVVVEVGLTVMLAVV
Ga0207641_1123309523300026088Switchgrass RhizosphereVLEPPVQIVAGDAVAVTFSEAPTETVTDAVPEHPLAFVPVTEYVVVEVGLTVILAVVWPVFH
Ga0207641_1123309533300026088Switchgrass RhizosphereVSVLEPPVQIVDGDAVAATFKEAPTETITVAVPEHPLAFVPVTEYVVVEVGLTEILAVVWPVFH
Ga0207641_1176147413300026088Switchgrass RhizosphereVAPVAVKVEEPPTHIEEGEAVAVTLGKVPTDTVTVAVPEHPLAFVPVTEYVVVDVGLTVMLAVVWPVFHW
Ga0207641_1177830623300026088Switchgrass RhizosphereVAPLAVSVLDPPEQIDAGDAVAVTVIDEPIETVTEAVPEHPLELVPVTEYVVVEPGLTVMLAVVWPVFH
Ga0207676_1086119913300026095Switchgrass RhizosphereVAPLAVNVDEAPAQIDEGDAVAETVIDEPTETVTDAVREQPLEFVPVTEYVVVDVGLTVIVDVV
Ga0207676_1258759023300026095Switchgrass RhizosphereVSVEEPPEQIVDGDAVAVTLGVEPTETVTEVVPEQPLAFVPVTEYVVVEAGLTVMLAVVWPVLH
Ga0207674_1099672213300026116Corn RhizosphereVLDPPEQIVDGDAVAVTLGVDPTETVTETVLEHPLEFVPVTEYVVVEVGLTVMLAVVSPVLH
Ga0207674_1149816813300026116Corn RhizospherePEQIVDGDAVAVTFGVDPTETVTETVFEQPLELVPVTEYVVVEVGLTVMLAVVCPVLH
Ga0207674_1222468313300026116Corn RhizosphereVRVLDPPEQIVDGDAVAVTFGIWLTVTVMDVVFEHPLEFVPVTEYVVVEVGLTV
Ga0207674_1222468323300026116Corn RhizosphereVSVLEPPEQIVDGDAVAVTFGVDATETVTETVLEQPLEFVPVTEYVVVEVGLTVMLAVVSPVLH
Ga0209240_114946013300026304Grasslands SoilLVAPLAVIVLEDPEHMEDGEADAVTLSSEPTDTVTDAVPEHPLAFVPVTEYVVVEVGLTVMLSVVWPVLH
Ga0209060_1048654623300027826Surface SoilVSVLDPPAQIDAGDAVAATVIDDPTETVTDAVPEQPEEFVPVTEYVVVEVGLTVMLAVV
Ga0209166_1029894013300027857Surface SoilVRVLEPPAQIAEGEAVAVTFGEAPTDTVTDAVFEHPLEFVPVTEYVVVEPGLTTMLAVVSPVLH
Ga0209166_1029894023300027857Surface SoilVAPLAVRVLEPPAQIAEGEAVAVTFGEAPTDTVTDAVFEQPLELVPVTEYVVVEPGLTTMLAVVWPVLH
Ga0137415_1148512423300028536Vadose Zone SoilVSVLDPPVQIEAGDAVAATVIDEPTETVTETVFEQPLAFVPVTEYVVVEVGLTVILAVVCPVLH

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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