Metagenome / Metatranscriptome Family F089244

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089244
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	66 residues
Representative Sequence	VTGEDLTDRMWLELSALAGDRWPAIRRAVAARIAADLLAELDRPPPPASRLHRERQLRADQFCHREVA
Number of Associated Samples	85
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.73 %
% of genes near scaffold ends (potentially truncated)	27.52 %
% of genes from short scaffolds (< 2000 bps)	72.48 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.725 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.853 % of family members)
Environment Ontology (ENVO)	Unclassified (30.275 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.119 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.25% β-sheet: 0.00% Coil/Unstructured: 43.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF08281	Sigma70_r4_2	49.54
PF04545	Sigma70_r4	5.50
PF12680	SnoaL_2	1.83
PF04542	Sigma70_r2	1.83
PF02627	CMD	0.92
PF00201	UDPGT	0.92
PF00196	GerE	0.92
PF02567	PhzC-PhzF	0.92
PF04075	F420H2_quin_red	0.92
PF05721	PhyH	0.92
PF04655	APH_6_hur	0.92
PF13174	TPR_6	0.92
PF00144	Beta-lactamase	0.92
PF00004	AAA	0.92
PF01904	DUF72	0.92
PF13371	TPR_9	0.92
PF02687	FtsX	0.92
PF08044	DUF1707	0.92
PF07883	Cupin_2	0.92
PF12697	Abhydrolase_6	0.92
PF07690	MFS_1	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.83
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.83
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.83
COG1819	UDP:flavonoid glycosyltransferase YjiC, YdhE family	Carbohydrate transport and metabolism [G]	1.83
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.83
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	0.92
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.92
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.92
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.92
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.92
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.92
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.92
COG3570	Streptomycin 6-kinase	Defense mechanisms [V]	0.92
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.72 %
Unclassified	root	N/A	30.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.72 %
Unclassified	root	N/A	30.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.72 %
Unclassified	root	N/A	30.28 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	52.29 %
Unclassified	root	N/A	30.28 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	15.60 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	10.09 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.01 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.92 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.83 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.83 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.92 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.83 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.83 %
Peptococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae	0.92 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1.83 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.83 %
unclassified Peptococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → unclassified Peptococcaceae	0.92 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.83 %
Peptococcaceae bacterium 1109	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → unclassified Peptococcaceae → Peptococcaceae bacterium 1109	0.92 %
Pseudonocardia petroleophila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia petroleophila	0.92 %
unclassified Pseudonocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia	0.92 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.83 %
Pseudonocardia sp. MH-G8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. MH-G8	0.92 %
Peptococcaceae bacterium 1109	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → unclassified Peptococcaceae → Peptococcaceae bacterium 1109	0.92 %
Pseudonocardia petroleophila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia petroleophila	0.92 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10002404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18166	Open in IMG/M
3300005332\|Ga0066388_100402247	All Organisms → cellular organisms → Bacteria	2015	Open in IMG/M
3300005332\|Ga0066388_101499421	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300005435\|Ga0070714_100975351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	824	Open in IMG/M
3300005439\|Ga0070711_100250730	All Organisms → cellular organisms → Bacteria	1388	Open in IMG/M
3300005440\|Ga0070705_101930187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	503	Open in IMG/M
3300005445\|Ga0070708_101457599	Not Available	638	Open in IMG/M
3300005471\|Ga0070698_100396090	Not Available	1314	Open in IMG/M
3300005471\|Ga0070698_100407153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1294	Open in IMG/M
3300005471\|Ga0070698_100522697	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1125	Open in IMG/M
3300005537\|Ga0070730_10018809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5405	Open in IMG/M
3300005540\|Ga0066697_10558039	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300005713\|Ga0066905_100019373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3573	Open in IMG/M
3300005764\|Ga0066903_100376522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2317	Open in IMG/M
3300005764\|Ga0066903_104915965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	710	Open in IMG/M
3300006028\|Ga0070717_10980301	Not Available	770	Open in IMG/M
3300006175\|Ga0070712_101363754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. MH-G8	618	Open in IMG/M
3300006804\|Ga0079221_10285260	Not Available	959	Open in IMG/M
3300006854\|Ga0075425_102924660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia petroleophila	524	Open in IMG/M
3300006954\|Ga0079219_12046813	Not Available	546	Open in IMG/M
3300009012\|Ga0066710_100798506	Not Available	1446	Open in IMG/M
3300009137\|Ga0066709_100806382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → unclassified Peptococcaceae → Peptococcaceae bacterium 1109	1360	Open in IMG/M
3300009162\|Ga0075423_12209481	Not Available	598	Open in IMG/M
3300009792\|Ga0126374_10012614	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3404	Open in IMG/M
3300009792\|Ga0126374_11302753	Not Available	587	Open in IMG/M
3300010046\|Ga0126384_10019788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4331	Open in IMG/M
3300010047\|Ga0126382_10151121	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1590	Open in IMG/M
3300010048\|Ga0126373_10166054	All Organisms → cellular organisms → Bacteria	2112	Open in IMG/M
3300010048\|Ga0126373_10521966	Not Available	1233	Open in IMG/M
3300010358\|Ga0126370_10576069	Not Available	967	Open in IMG/M
3300010360\|Ga0126372_10361012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1308	Open in IMG/M
3300010360\|Ga0126372_11423385	Not Available	726	Open in IMG/M
3300010361\|Ga0126378_10005685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9713	Open in IMG/M
3300010361\|Ga0126378_10216260	Not Available	1998	Open in IMG/M
3300010361\|Ga0126378_10250950	Not Available	1863	Open in IMG/M
3300010361\|Ga0126378_10567618	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1249	Open in IMG/M
3300010361\|Ga0126378_12873351	Not Available	550	Open in IMG/M
3300010361\|Ga0126378_13290914	Not Available	513	Open in IMG/M
3300010362\|Ga0126377_10520296	Not Available	1224	Open in IMG/M
3300010366\|Ga0126379_11179781	Not Available	872	Open in IMG/M
3300010379\|Ga0136449_100228216	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3490	Open in IMG/M
3300010398\|Ga0126383_10122863	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2370	Open in IMG/M
3300010398\|Ga0126383_10956582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	944	Open in IMG/M
3300011270\|Ga0137391_10150192	All Organisms → cellular organisms → Bacteria	2029	Open in IMG/M
3300011270\|Ga0137391_10723948	Not Available	825	Open in IMG/M
3300012189\|Ga0137388_10545940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1077	Open in IMG/M
3300012198\|Ga0137364_10060611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2555	Open in IMG/M
3300012199\|Ga0137383_10014010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	5441	Open in IMG/M
3300012199\|Ga0137383_10097211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2136	Open in IMG/M
3300012201\|Ga0137365_10016019	All Organisms → cellular organisms → Bacteria	5870	Open in IMG/M
3300012206\|Ga0137380_10000370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	31968	Open in IMG/M
3300012206\|Ga0137380_10829064	Not Available	797	Open in IMG/M
3300012207\|Ga0137381_10421170	Not Available	1165	Open in IMG/M
3300012209\|Ga0137379_10282684	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1571	Open in IMG/M
3300012210\|Ga0137378_10033076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4592	Open in IMG/M
3300012211\|Ga0137377_10196932	All Organisms → cellular organisms → Bacteria	1934	Open in IMG/M
3300012350\|Ga0137372_10024343	All Organisms → cellular organisms → Bacteria	5625	Open in IMG/M
3300012354\|Ga0137366_10031429	All Organisms → cellular organisms → Bacteria	4116	Open in IMG/M
3300012948\|Ga0126375_10033513	All Organisms → cellular organisms → Bacteria	2578	Open in IMG/M
3300012971\|Ga0126369_12710080	Not Available	580	Open in IMG/M
3300016294\|Ga0182041_10512209	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1042	Open in IMG/M
3300017821\|Ga0187812_1041935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1554	Open in IMG/M
3300017937\|Ga0187809_10127806	Not Available	867	Open in IMG/M
3300020581\|Ga0210399_10154239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1900	Open in IMG/M
3300021178\|Ga0210408_10037239	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3827	Open in IMG/M
3300021476\|Ga0187846_10041070	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2066	Open in IMG/M
3300021560\|Ga0126371_12164501	Not Available	671	Open in IMG/M
3300025910\|Ga0207684_10269633	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1468	Open in IMG/M
3300025910\|Ga0207684_11228650	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300025922\|Ga0207646_10118538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2378	Open in IMG/M
3300026552\|Ga0209577_10776749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	536	Open in IMG/M
3300027646\|Ga0209466_1113112	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300027857\|Ga0209166_10235917	All Organisms → cellular organisms → Bacteria → Terrabacteria group	975	Open in IMG/M
3300027905\|Ga0209415_10035513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6973	Open in IMG/M
3300030730\|Ga0307482_1043355	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1065	Open in IMG/M
3300030730\|Ga0307482_1126219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	726	Open in IMG/M
3300031543\|Ga0318516_10099557	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1642	Open in IMG/M
3300031543\|Ga0318516_10652006	Not Available	599	Open in IMG/M
3300031544\|Ga0318534_10100923	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300031544\|Ga0318534_10205926	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1135	Open in IMG/M
3300031544\|Ga0318534_10404979	Not Available	783	Open in IMG/M
3300031564\|Ga0318573_10051892	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2004	Open in IMG/M
3300031572\|Ga0318515_10013518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3722	Open in IMG/M
3300031640\|Ga0318555_10171065	Not Available	1167	Open in IMG/M
3300031668\|Ga0318542_10511570	Not Available	624	Open in IMG/M
3300031680\|Ga0318574_10881684	All Organisms → cellular organisms → Bacteria → Terrabacteria group	524	Open in IMG/M
3300031681\|Ga0318572_10298295	Not Available	952	Open in IMG/M
3300031682\|Ga0318560_10292203	Not Available	878	Open in IMG/M
3300031718\|Ga0307474_10010883	All Organisms → cellular organisms → Bacteria	6590	Open in IMG/M
3300031744\|Ga0306918_10234643	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1395	Open in IMG/M
3300031748\|Ga0318492_10098998	All Organisms → cellular organisms → Bacteria	1430	Open in IMG/M
3300031748\|Ga0318492_10174367	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1092	Open in IMG/M
3300031753\|Ga0307477_10190688	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1427	Open in IMG/M
3300031765\|Ga0318554_10630629	All Organisms → cellular organisms → Bacteria → Terrabacteria group	603	Open in IMG/M
3300031771\|Ga0318546_11121273	Not Available	553	Open in IMG/M
3300031859\|Ga0318527_10142057	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1004	Open in IMG/M
3300031890\|Ga0306925_12150412	Not Available	521	Open in IMG/M
3300031897\|Ga0318520_11062557	All Organisms → cellular organisms → Bacteria → Terrabacteria group	512	Open in IMG/M
3300031942\|Ga0310916_10556182	Not Available	976	Open in IMG/M
3300031942\|Ga0310916_11001320	All Organisms → cellular organisms → Bacteria → Terrabacteria group	697	Open in IMG/M
3300032001\|Ga0306922_11482664	All Organisms → cellular organisms → Bacteria → Terrabacteria group	679	Open in IMG/M
3300032039\|Ga0318559_10119496	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300032066\|Ga0318514_10339163	Not Available	796	Open in IMG/M
3300032090\|Ga0318518_10636565	All Organisms → cellular organisms → Bacteria → Terrabacteria group	543	Open in IMG/M
3300032261\|Ga0306920_100690192	All Organisms → cellular organisms → Bacteria → Proteobacteria	1505	Open in IMG/M
3300032261\|Ga0306920_100762208	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1423	Open in IMG/M
3300032805\|Ga0335078_10228584	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2557	Open in IMG/M
3300032895\|Ga0335074_10162839	All Organisms → cellular organisms → Bacteria	2797	Open in IMG/M
3300033290\|Ga0318519_10335275	All Organisms → cellular organisms → Bacteria → Terrabacteria group	891	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.17%
Host-Associated	Host-Associated	1.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.33%
Aquatic	Environmental → Aquatic	1.83%
Plants	Host-Associated → Plants	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.41%
Freshwater	Environmental → Aquatic → Freshwater	1.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.83%
Cave	Environmental → Terrestrial → Cave	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.06%
Loam	Environmental → Terrestrial → Soil → Loam	16.51%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.53%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.03%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.01%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.67%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	20.18%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.50%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.67%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_1000240412	3300001356	Peatlands Soil	VTGEDLTDRMWLELSALAGDRWPAIRRAVAARIAADLLAELDRPPPPASRLHRERQLRADQFCHREVA*
Ga0066388_1004022472	3300005332	Tropical Forest Soil	MTSDDLASRMWLELSALAGDRWPAIRRAAAAQVAAGLLAELDRPPPPASRLHRDRQLRAGQFCLREVA*
Ga0066388_1014994213	3300005332	Tropical Forest Soil	VTGEDVASRMWLELSALAGDRWSAIRRTVAAQIAAGLLAELDRPPPPASRLHRERQLRADQFRHREV
Ga0070714_1009753512	3300005435	Agricultural Soil	MTGDDLESRMSLELSALAGDRWPAIRCAAAALIVAELLAELDRPPPPASRLHRERQLRADRFRLREVA*
Ga0070711_1002507303	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VNGEDVASRMRLELSALAPDRWPAIRRAVAARIAAGLLAELDGLPRSASRLDLERQRRARQLAHREVA*
Ga0070705_1019301871	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MTGDDLESRMSLELSALAGDRWPAIRCAAAALIVAELLAELDRPPPPASRLHRERQLRAD
Ga0070708_1014575992	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VTGEDLASRMWLELPALAGDRWPAIRRAVAARIAADLLAALDRPPPPASRLYLERLLRAGQFGCREVA*
Ga0070698_1003960902	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VTGEDLTVRMWLELSALAGDRWPAIRRAAAARIAADLLADLDRPPPPASRLHRERQLRAGQFCHREVA*
Ga0070698_1004071532	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VTGEDLASRMWLELPALAGDRWPAIRRAVAARIAADLLAALDRPPPPASRLHLERLLRAGQFGFREVA*
Ga0070698_1005226972	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VTDEILRSRMCQQMSAVAGDRWSAIRQAIAARIAADLLAELDRPPPPASRLHTELRLRVDQFCHQEVA*
Ga0070730_100188097	3300005537	Surface Soil	VSGEDLTGRVWLELSALARDRWPAIRRAVAARIAADLLAELDRPPSPASRLHRERQLRADQFCHQEVA*
Ga0066697_105580392	3300005540	Soil	VNGEDVTARMWLELSALAPDRWPTIRRAVAARIAADLLAELDRLPRPASRLDLERQLRAAQLAHREVA*
Ga0066905_1000193732	3300005713	Tropical Forest Soil	VTGEDVASRMWLELSALAGDRWSAIRRTVAAQIAAGLLAELDRPPPPASRLHRERQLRADQFRHREVA*
Ga0066903_1003765224	3300005764	Tropical Forest Soil	VTGGDLTSRMWLELSALAEDRWPVIRRAVAARIAAELLAELDRPPPPASRLYLERQLRADRCCHREVA*
Ga0066903_1049159652	3300005764	Tropical Forest Soil	MTGDDLGSRMWLELSALAGDRWPAIRRTVAAQIAGDLLTELDRPPPPASRLHRERQLRAGQFCLREVA*
Ga0070717_109803012	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VTGEDLASRMCLELSALAGDRWPAIRGAVAARIAADLLAALDRPPPPASRLHLERLLRTGQFGFREVA*
Ga0070712_1013637542	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VTGDELTALMWLELSALAEDRWTAIRRAVAARIAADLLAELDRPPPPASRLHRERQLRAGQFCHREVA*
Ga0079221_102852602	3300006804	Agricultural Soil	VTGDELAALMWLELSALAEDRWTAIRRAVAARIAADLLAELDRPPPPASRLHRERQLRAGQFCHREVA*
Ga0075425_1029246602	3300006854	Populus Rhizosphere	VTGDELTALMWLELSALAEDRWTAIRRAVAARIAAELLAELDRPPPPASRLHRERQLRAGQFCHREVA*
Ga0079219_120468132	3300006954	Agricultural Soil	VTGDELAALMWLELSALAEDRWTAIHRAVAARIAAELLAELDRPPPPASRLHRERQLRAGQFCHREVA*
Ga0066710_1007985063	3300009012	Grasslands Soil	VNGEDVTARMWLELSALAPDRWPTIRRAVAARIAADLLAELDRLPRPASRLDLERQLRAGQLAHREVA
Ga0066709_1008063822	3300009137	Grasslands Soil	MWLELSALAPDRWPTIRRAVAARIAADLLAELDRLPRPASRLDLERQLRAGQLAHREVA*
Ga0075423_122094811	3300009162	Populus Rhizosphere	PADLGGGLVTGDELTALMWLELSALAEDRWTAIRRAVAARIAAELLAELDRPPPPASRLHRERQLRAGQFCHREVA*
Ga0126374_100126144	3300009792	Tropical Forest Soil	MWLELSALAGDRWSAIRRTVAAQIAAGLLAELDRPPPPASRLHRERQLRADQFRHREVA*
Ga0126374_113027532	3300009792	Tropical Forest Soil	MTSDDLASRMWLELSALAQDQWPAIRRAAAAQVAAGLLAELDRPPPPASRLHRDRQLRAGQFCLREVA*
Ga0126384_100197883	3300010046	Tropical Forest Soil	MWLELSALAGDRWSAIRRTVAAQIAAGLLAELDRPPPPASRLYRERQLRADQFRHREVA*
Ga0126382_101511213	3300010047	Tropical Forest Soil	DDLAARLQLELSALAADRWPAIRRTVAARIAADLLAELDGPPPPTSRLHRERQLRAGQFCHREVA*
Ga0126373_101660541	3300010048	Tropical Forest Soil	VTGEDLASRMWLELPALAGDRWPAIRRAVAARIAADLLAALDRPPSPASRLYLERLLRAGQFGYREVA*
Ga0126373_105219662	3300010048	Tropical Forest Soil	MWPELSALAADRWPAIRRHAAAQIAADLLAELDRPPPPASRLHLERQLRADRFCHREVA*
Ga0126370_105760692	3300010358	Tropical Forest Soil	VTGGDVTSQMWLELSALTKDRWPVIRRAVAARIAAELLAELDRPPRPASRLYLERQLRADRCCHREVA*
Ga0126372_103610122	3300010360	Tropical Forest Soil	MWLELSALAEDRWPAIRRAVAARIAAALLAELDHPPTPPSRLYLERQLRADQCCHREVA*
Ga0126372_114233852	3300010360	Tropical Forest Soil	MRLELSALAGDRWAGIRRAVAAQLAAELLAELDRPPPPASRLHRERQLRVRQFCLREVA*
Ga0126378_100056856	3300010361	Tropical Forest Soil	VTGDDLALWMWSELSALAGDQWGAIRGAVAARIVTDLLAELDRPPPPASRLHRERQLRAGQFCLREVA*
Ga0126378_102162602	3300010361	Tropical Forest Soil	MWLELPALAGDRWPAIRRAVAARIAADLLAALDRPPSPASRLYLERLLRAGQFGYREVA*
Ga0126378_102509502	3300010361	Tropical Forest Soil	VTSDDLDSRMQLELSALAGDRWPAIRRAAAAQIAADLLAELDRPAPPASRLHRDRQLRAGQFCLREVA*
Ga0126378_105676182	3300010361	Tropical Forest Soil	VTGEDIASRIWLELSALAGDRWPAIRRTVAAQIVAGLLAELDRPPPPASRLHRERQLRADQFCHREVA*
Ga0126378_128733512	3300010361	Tropical Forest Soil	MTGDDLGSRMWLELSALAGGRWPAIRRTVAAQIAGDLLTELDRPPPGASRLHRERQLRAGQFCHREVA*
Ga0126378_132909141	3300010361	Tropical Forest Soil	IWPELSAPAGDRWPAIRRRAAAQIAADLLAELDRPPPPASRLHLERQLRADRFCHREVA*
Ga0126377_105202963	3300010362	Tropical Forest Soil	MWLELSALAEDRWPVIRRAVAARIAAELLAELDRPPPPASRLYLERQLRADRCCHREVA*
Ga0126379_111797812	3300010366	Tropical Forest Soil	VTGDDLDSRMQLELSALAGDRWPAIRRAAAAQIAAGLLAELDRPAPPASRLHRDRQLRAGQFCLRAVA*
Ga0136449_1002282163	3300010379	Peatlands Soil	MWLELSALAGDRWPAIRRAVAARIAADLLAELDRPPPPASRLHRERQLRADQFCHREVA*
Ga0126383_101228634	3300010398	Tropical Forest Soil	MTGDDLASRLWLELSALAGDRWPAIRRAAAAQVAADLLAELDRPPPQASRLHRDRQLRAGQFCLREVA*
Ga0126383_109565822	3300010398	Tropical Forest Soil	VTGDDLISRMSLELSALAGDRWPAIRRAAAARIAAELLAELDRPPPPASRLYLERQLRADRCCHREVA*
Ga0137391_101501923	3300011270	Vadose Zone Soil	MRLELSEVAGDRWPAIRRSVAARIADGLLAELDRPPPPASRLHRERQLKASEFCNREVA*
Ga0137391_107239482	3300011270	Vadose Zone Soil	VNDEDVTAGMCLELSTLAPDRWPAIRRAVAARIAADLLAELDRLPRPASRLDLERQLRASQLAHREVA*
Ga0137388_105459402	3300012189	Vadose Zone Soil	VTGEDLAARMRLELSELAGDRWPAIRRSVAARVAADLLAELDRPPPPASRLHRERQLKASEFCNREVA*
Ga0137364_100606112	3300012198	Vadose Zone Soil	MTGDELTALMWLELSALAEDRWTAIRRTVAARIAADLLAELDRSPPPASRLHRERQLRAGQFCHREVA*
Ga0137383_100140106	3300012199	Vadose Zone Soil	VNGEDVTARMWLELSALAPDRWLAIRRAVAARIAADLLAELDRLPRPASRLDLERQLRAGQLAHRKVA*
Ga0137383_100972112	3300012199	Vadose Zone Soil	VNGEDVASRMWLELSALAPDRWPAIRRAVAARIAARLLAELDGLPRSASQLDLERQRRARQLAHREVA*
Ga0137365_100160193	3300012201	Vadose Zone Soil	VTGEDLASRMWLELSALAGDRWPAIRRTVAARIAAELLAELDRPPPPASRLHLERQLRADQFCRREVA*
Ga0137380_1000037024	3300012206	Vadose Zone Soil	MWLELTALAPDRWPAIRRAVAARIAADLLAELNRLPRPASRLDLERQLRAGQLAHQEVA*
Ga0137380_108290641	3300012206	Vadose Zone Soil	APACRGGGLVTGEDLASRMWLELSALAGDRWPAIRRAVAARIAADLLAELDRPPPPASRLHLERQLRADQFCRREVA*
Ga0137381_104211703	3300012207	Vadose Zone Soil	VTGEDLASRMWLELSALAGDRWPAIRRAVAARIAADLLAELDRPPPPASRLHLERQLRADQFCRREVA*
Ga0137379_102826842	3300012209	Vadose Zone Soil	MWLELSALAGDRWPAIRRAVAARIAADLLAELDRPPPPASRLHLERQLRADQFCRREVA*
Ga0137378_100330766	3300012210	Vadose Zone Soil	MWLELSALAPDRWLAIRRAVAARIAADLLAELDRRPRPASRLDLERQLRAGQLAHRKVA*
Ga0137377_101969323	3300012211	Vadose Zone Soil	VTGDELTALMWLELSALAEDRWTAIRRAVAARIAADLLAELDRSPPPASRLHRERQLRAGQFCHREVA*
Ga0137372_100243434	3300012350	Vadose Zone Soil	MWLELSALAGDRWPAIRRTVAARIAAELLAELDRPPPPASRLHLERQLRADQFCRREVA*
Ga0137366_100314294	3300012354	Vadose Zone Soil	VNDEDVTARMWLELTALAPDRWPAIRRAVAARIAADLLAELNRLPRPASRLDLERQLRAGQLAHQEVA*
Ga0126375_100335134	3300012948	Tropical Forest Soil	VTGEDVASRIWLELSALAGDRWWAIRRTVAAQIAAGLLAELDRPPPPASRLHRERQLRADQFRHREVA*
Ga0126369_127100802	3300012971	Tropical Forest Soil	VTGGDLTSRMGLELSALAEDRWPAIRRAVAARIAAALLAELDHPPTPPSRLYLERQLRADQCCHREVA*
Ga0182041_105122091	3300016294	Soil	MTGGDLASRMWVELSALAGDRWPAIRRAVAAQIAAHLLAELDRPPPPASRLHRDRHLRAGQFCLREVA
Ga0187812_10419353	3300017821	Freshwater Sediment	MWLELSAIAGDRWPAIRRSIAARIAADLLAELDRLPPPASRLHRERQLRADQFCHREVAW
Ga0187809_101278062	3300017937	Freshwater Sediment	VTGVDLTDRMWLELSALAGDRWPAIRRAVAARVAADLLAELDRPPPPASRLHWERQLRADQFCHREVA
Ga0210399_101542392	3300020581	Soil	VNDEDVASRMWLELSALAPDRWSAIRRAVAARIAAGLLAELDGLPRSASRLDLERQRRARQLAHREVA
Ga0210408_100372392	3300021178	Soil	VTGEDLTARMWLELSALAGDRWPAIRRAAAARIAADLLADLDRPPPPASRLHRERQLRAGQFCHREVA
Ga0187846_100410702	3300021476	Biofilm	VTGEDLTARMRLELSAVAGDRWPAIRRAAAARIAADLLAELDRPPSPASRLHRERQLRADQFCHREVA
Ga0126371_121645012	3300021560	Tropical Forest Soil	EDLASRMWLELPALAGDRWPAIRRAVAARIAADLLAALDRPPSPASRLYLERLLRAGQFGYREVA
Ga0207684_102696332	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VTGEDLASRMWLELPALAGDRWPAIRRAVAARIAADLLAALDRPPPPASRLYLERLLRAGQFGCREVA
Ga0207684_112286501	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	GAGTPAAAGGGGDLVTGEDLTARMWLELSALAGDRWPAIRRAAAARIAADLLAELDRPPPPASRLHRERQLRAGQFCHREVA
Ga0207646_101185384	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VTGEDLASRMWLELPALAGDRWPAIRRAVAARIAADLLAALDRPPPPASRLHLERLLRTGQFGFREVA
Ga0209577_107767492	3300026552	Soil	VNGEDVTARMWLELSALAPDRWPTIRRAVAARIAADLLAELDRLPRPASRLDLERQLRAG
Ga0209466_11131122	3300027646	Tropical Forest Soil	MWLELSALAGDRWSAIRRTVAAQIAAGLLAELDRPPPPASRLHRERQLRADQFRHREVA
Ga0209166_102359171	3300027857	Surface Soil	GEDLTGRVWLELSALARDRWPAIRRAVAARIAADLLAELDRPPSPASRLHRERQLRADQFCHQEVA
Ga0209415_100355133	3300027905	Peatlands Soil	VTGEDLTDRMWLELSALAGDRWPAIRRAVAARIAADLLAELDRPPPPASRLHRERQLRADQFCHREVA
Ga0307482_10433551	3300030730	Hardwood Forest Soil	APAGGGGGGLVNGEDVASRMWLELSALAPDRWPAIRRAAAARIAAGLLAELDGLPRSASRLDLERQRRARQLAHREVA
Ga0307482_11262191	3300030730	Hardwood Forest Soil	VNGEDVASRMRLELSALAPDRWPAIRRAVAARIAAGLLAELDGLPRSASRLDLERQRRARQL
Ga0318516_100995572	3300031543	Soil	MTGGDLASRMWVELSALAGDRWPAIRRAAAAQVAAGLLAELDRPPPPASRLHRDRHLRAGQFCLREVA
Ga0318516_106520061	3300031543	Soil	VTGEDLTARMRLELSELVGDRWPAIRGSVAALIAADLLAELDRPPPPASRLHRERQLKASEFCNREVA
Ga0318534_101009233	3300031544	Soil	VNGEDVTPRMWQELSALAPDRWPAIRRAVAARIAADLLAELDGLPRSTSLLDLERQRRAGQLAHREVA
Ga0318534_102059262	3300031544	Soil	RMWVELSALAGDRWPAIRRAAAAQVAAGLLAELDRPPPPASRLHRDRHLRAGQFCLREVA
Ga0318534_104049792	3300031544	Soil	VTGEDLTARMRLELSELVGDRWPAIRGSVAALIAADLLAELDRPPPPASRLHRERQLKAS
Ga0318573_100518923	3300031564	Soil	VNGEDVTPRMWQELSALAPDRWPAIRRAVAARIAADLLAELDGLPRSASLLDLERQRRAGQVAHREVA
Ga0318515_100135185	3300031572	Soil	MTGGDLASRMWVELSALAGDRWPAIRRAAAAQVAAGLLAELDRPPPPASLLHRDRHLRAGQFCLREVA
Ga0318555_101710653	3300031640	Soil	VNGEDVTPRMWQELSALAPDRWPAIRRAVAARIAADLLAELDGLPRSASLLDLERQRRAGHRSG
Ga0318542_105115702	3300031668	Soil	VNGEDVTPRMWQELSALAPDRWPAIRRAVAARIAADLLAELDGLPRSASLLDLERQRRAGQLAHREVA
Ga0318574_108816841	3300031680	Soil	DLTARMRLELSELVGDRWPAIRGSVAALIAADLLAELDRPPPPASRLHRERQLKASEFCNREVA
Ga0318572_102982951	3300031681	Soil	VNGEDVTPRMWQELSALAPDRWPAIRRAVAARIAADLLAELDGLPRSTSLLDLERQRRAGQLAHRE
Ga0318560_102922033	3300031682	Soil	MTGGDLASRMWVELSALAGDRWPAIRRAAAAQVAAGLLAELDRPPPPASRLHRDRHLRAGQFC
Ga0307474_100108832	3300031718	Hardwood Forest Soil	VNGEDVASRMWLELSALAPDRWPAIRRAAAARIAAGLLAELDGLPRSASRLDLERQRRARQLAHREVA
Ga0306918_102346432	3300031744	Soil	MTGGDLASRMWVALSALAGDRWPAIRRAAAAQVAAGLLAELDRPPPPASLLHRDRHLRAGQFCLREVA
Ga0318492_100989981	3300031748	Soil	MTGGDLASRMWVELSALAGDRWPAIRRAAAAQVAAGLLAELDRPPPPASLLHRDRHLRAGQFCLRE
Ga0318492_101743673	3300031748	Soil	GLVNGEDVTPRMWQELSALAPDRWPAIRRAVAARIAADLLAELDGLPRSASLLDLERQRRAGQLAHREVA
Ga0307477_101906883	3300031753	Hardwood Forest Soil	VNGEDVASRMWLELSALAPDRWPAIRRAVAARIAAGLLAELDGLPRSASRLDLERQRRAHQLAHREVA
Ga0318554_106306292	3300031765	Soil	VTSDDHDSRMQLELSALAGDRWPAIRRAVAAQIAAHLLAELDRPPPPASRLHRDRQLRAGQFCLREVA
Ga0318546_111212732	3300031771	Soil	MTGEDLTAQMRLELSELAGDRWPAIRSSVAALIAADLLAELDRPPPPASRLHRERQLKASEFCNREVA
Ga0318527_101420572	3300031859	Soil	GLVNGEDVTPRMWQELSALAPDRWPAIRRAVAARIAADLLAELDGLPRSASLLDLERQRRAGQVAHREVA
Ga0306925_121504122	3300031890	Soil	VTGEDLTAQMRLELSELAGDRWPAIRSSVAALIAADLLAELDRPPPPASRLHRERQLKASEFCNREVA
Ga0318520_110625572	3300031897	Soil	HDSRMQLELSALAGDRWPAIRRAVAAQIAAHLLAELDRPPPPASRLHRDRQLRAGQFCLREVA
Ga0310916_105561822	3300031942	Soil	MTGGDLASRMWVELSALAGDRWPAIRRAAAAQVAAGLLAELDRPPPPASRLHRDRHLR
Ga0310916_110013202	3300031942	Soil	RMWVELSALAGDRWPAIRRAAAAQVAAGLLAELDRPPPPASLLHRDRHLRAGQFCLREVA
Ga0306922_114826641	3300032001	Soil	EDLTARMRLELSELVGDRWPAIRGSVAALIAADLLAELDRPPPPASRLHRERQLKASEFCNREVA
Ga0318559_101194963	3300032039	Soil	VNGEDVTPRMWQELSALAPDRWPAIRRAVAARIAADLLAELDGLPRSASLLDLERQRRAGQLAHRE
Ga0318514_103391631	3300032066	Soil	VTPRMWQELSALAPDRWPAIRRAVAARIAADLLAELDGLPRSTSLLDLERQRRAGQLAHREVA
Ga0318518_106365651	3300032090	Soil	MTGGDLASRMWVELSALAGDRWPAIRRAVAAQIAAHLLAELDRPPPPASRLHRDRQLRAGQFCLREVA
Ga0306920_1006901923	3300032261	Soil	SRMQLELSALAGDRWPAIRRAVAAQIAAHLLAELDRPPPPASRLHRDRQLRAGQFCLREV
Ga0306920_1007622082	3300032261	Soil	MTGEDLTALMQLELSELAGDRWPAIRSSVAALIAADLLAELDRPPPPASRLHRERQLKASEFCNREVA
Ga0335078_102285843	3300032805	Soil	VNGEDVASRMRLELSALAPDRWPAIRRAVAARIAAGLLAELDGLPRPASRLDLERQRRARQLAHREVA
Ga0335074_101628392	3300032895	Soil	MPADDLRSRMWRELLALTPDRWPAIRHAVAARIAAELLAQLDRPPPPGSRLHRERHLRAERICHREVA
Ga0318519_103352751	3300033290	Soil	VMTGGDLASRMWVELSALAGDRWPAIRRAAAAQVAAGLLAELDRPPPPASLLHRDRHLRAGQFCLREVA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089244

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences