NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F089324

Metagenome / Metatranscriptome Family F089324

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F089324
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 45 residues
Representative Sequence PASAPRKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD
Number of Associated Samples 102
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 99.08 %
% of genes from short scaffolds (< 2000 bps) 89.91 %
Associated GOLD sequencing projects 98
AlphaFold2 3D model prediction Yes
3D model pTM-score0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (99.083 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(6.422 % of family members)
Environment Ontology (ENVO) Unclassified
(32.110 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(30.275 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 16.90%    β-sheet: 0.00%    Coil/Unstructured: 83.10%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.27
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF07883Cupin_2 60.55
PF09084NMT1 7.34
PF16277DUF4926 4.59
PF00848Ring_hydroxyl_A 4.59
PF00355Rieske 4.59
PF04255DUF433 2.75
PF00582Usp 1.83
PF02954HTH_8 1.83
PF15919HicB_lk_antitox 1.83
PF08241Methyltransf_11 0.92
PF04607RelA_SpoT 0.92
PF03721UDPG_MGDP_dh_N 0.92
PF00211Guanylate_cyc 0.92
PF01118Semialdhyde_dh 0.92
PF12760Zn_Tnp_IS1595 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG4638Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunitInorganic ion transport and metabolism [P] 9.17
COG0715ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic componentInorganic ion transport and metabolism [P] 7.34
COG4521ABC-type taurine transport system, periplasmic componentInorganic ion transport and metabolism [P] 7.34
COG2442Predicted antitoxin component of a toxin-antitoxin system, DUF433 familyDefense mechanisms [V] 2.75
COG0240Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 0.92
COG0677UDP-N-acetyl-D-mannosaminuronate dehydrogenaseCell wall/membrane/envelope biogenesis [M] 0.92
COG1004UDP-glucose 6-dehydrogenaseCell wall/membrane/envelope biogenesis [M] 0.92
COG12503-hydroxyacyl-CoA dehydrogenaseLipid transport and metabolism [I] 0.92
COG1893Ketopantoate reductaseCoenzyme transport and metabolism [H] 0.92
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 0.92

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms99.08 %
UnclassifiedrootN/A0.92 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000033|ICChiseqgaiiDRAFT_c2267793All Organisms → cellular organisms → Bacteria992Open in IMG/M
3300000550|F24TB_14059833All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300000580|AF_2010_repII_A01DRAFT_1043379All Organisms → cellular organisms → Bacteria695Open in IMG/M
3300000787|JGI11643J11755_11340217All Organisms → cellular organisms → Bacteria735Open in IMG/M
3300000793|AF_2010_repII_A001DRAFT_10113871All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300000953|JGI11615J12901_10180084All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium875Open in IMG/M
3300000955|JGI1027J12803_102059936All Organisms → cellular organisms → Bacteria996Open in IMG/M
3300003324|soilH2_10011036All Organisms → cellular organisms → Bacteria15446Open in IMG/M
3300003993|Ga0055468_10302001All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium512Open in IMG/M
3300004463|Ga0063356_101795555All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium921Open in IMG/M
3300004463|Ga0063356_102457545All Organisms → cellular organisms → Bacteria798Open in IMG/M
3300004633|Ga0066395_10860535All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300005169|Ga0066810_10123246All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300005177|Ga0066690_10447503All Organisms → cellular organisms → Bacteria874Open in IMG/M
3300005289|Ga0065704_10025015All Organisms → cellular organisms → Bacteria1326Open in IMG/M
3300005289|Ga0065704_10199503All Organisms → cellular organisms → Bacteria1153Open in IMG/M
3300005332|Ga0066388_102841814All Organisms → cellular organisms → Bacteria885Open in IMG/M
3300005336|Ga0070680_101240412All Organisms → cellular organisms → Bacteria645Open in IMG/M
3300005340|Ga0070689_100547739All Organisms → cellular organisms → Bacteria996Open in IMG/M
3300005436|Ga0070713_101391015All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300005614|Ga0068856_102024226All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300005764|Ga0066903_104757339All Organisms → cellular organisms → Bacteria722Open in IMG/M
3300005764|Ga0066903_107213955All Organisms → cellular organisms → Bacteria575Open in IMG/M
3300005829|Ga0074479_10109207All Organisms → cellular organisms → Bacteria1293Open in IMG/M
3300005830|Ga0074473_11241106All Organisms → cellular organisms → Bacteria820Open in IMG/M
3300006032|Ga0066696_10559734All Organisms → cellular organisms → Bacteria746Open in IMG/M
3300006049|Ga0075417_10745898All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium505Open in IMG/M
3300006173|Ga0070716_101064244All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300006845|Ga0075421_101543293All Organisms → cellular organisms → Bacteria725Open in IMG/M
3300006854|Ga0075425_101399052All Organisms → cellular organisms → Bacteria791Open in IMG/M
3300006865|Ga0073934_10081814All Organisms → cellular organisms → Bacteria2556Open in IMG/M
3300006871|Ga0075434_101860464All Organisms → cellular organisms → Bacteria608Open in IMG/M
3300006881|Ga0068865_101105241All Organisms → cellular organisms → Bacteria698Open in IMG/M
3300006894|Ga0079215_10270034All Organisms → cellular organisms → Bacteria916Open in IMG/M
3300009012|Ga0066710_101494176All Organisms → cellular organisms → Bacteria1043Open in IMG/M
3300009081|Ga0105098_10053337All Organisms → cellular organisms → Bacteria1653Open in IMG/M
3300009091|Ga0102851_12217783All Organisms → cellular organisms → Bacteria625Open in IMG/M
3300009094|Ga0111539_11817175All Organisms → cellular organisms → Bacteria707Open in IMG/M
3300009137|Ga0066709_104484723All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium510Open in IMG/M
3300009147|Ga0114129_11690742All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300009156|Ga0111538_11321628All Organisms → cellular organisms → Bacteria910Open in IMG/M
3300009167|Ga0113563_10834906All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Caldilinea → Caldilinea aerophila1047Open in IMG/M
3300009551|Ga0105238_11894617All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300009609|Ga0105347_1257667All Organisms → cellular organisms → Bacteria719Open in IMG/M
3300009814|Ga0105082_1046455All Organisms → cellular organisms → Bacteria726Open in IMG/M
3300009837|Ga0105058_1001347All Organisms → cellular organisms → Bacteria → Proteobacteria3924Open in IMG/M
3300010046|Ga0126384_11240567All Organisms → cellular organisms → Bacteria689Open in IMG/M
3300010048|Ga0126373_12737852All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300010304|Ga0134088_10041041All Organisms → cellular organisms → Bacteria2109Open in IMG/M
3300010323|Ga0134086_10037817All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1610Open in IMG/M
3300010358|Ga0126370_10161888All Organisms → cellular organisms → Bacteria1645Open in IMG/M
3300010359|Ga0126376_12836642All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300010362|Ga0126377_11819162All Organisms → cellular organisms → Bacteria684Open in IMG/M
3300010375|Ga0105239_10233754All Organisms → cellular organisms → Bacteria2063Open in IMG/M
3300011436|Ga0137458_1282605All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300012096|Ga0137389_10532935All Organisms → cellular organisms → Bacteria1008Open in IMG/M
3300012204|Ga0137374_10940865All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300012231|Ga0137465_1143123All Organisms → cellular organisms → Bacteria722Open in IMG/M
3300012474|Ga0157356_1024816All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300012512|Ga0157327_1025472All Organisms → cellular organisms → Bacteria701Open in IMG/M
3300012685|Ga0137397_10282105All Organisms → cellular organisms → Bacteria1237Open in IMG/M
3300012685|Ga0137397_10995341All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300012929|Ga0137404_10571239All Organisms → cellular organisms → Bacteria1015Open in IMG/M
3300012929|Ga0137404_10849433All Organisms → cellular organisms → Bacteria831Open in IMG/M
3300012948|Ga0126375_10482129All Organisms → cellular organisms → Bacteria920Open in IMG/M
3300012948|Ga0126375_10910328All Organisms → cellular organisms → Bacteria708Open in IMG/M
3300012989|Ga0164305_11447664All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300014259|Ga0075311_1080420All Organisms → cellular organisms → Bacteria672Open in IMG/M
3300014270|Ga0075325_1078700All Organisms → cellular organisms → Bacteria747Open in IMG/M
3300014296|Ga0075344_1011220All Organisms → cellular organisms → Bacteria1249Open in IMG/M
3300014969|Ga0157376_12439334All Organisms → cellular organisms → Bacteria563Open in IMG/M
3300016357|Ga0182032_10675186All Organisms → cellular organisms → Bacteria865Open in IMG/M
3300018000|Ga0184604_10358081All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300018052|Ga0184638_1121787All Organisms → cellular organisms → Bacteria952Open in IMG/M
3300018075|Ga0184632_10028228All Organisms → cellular organisms → Bacteria2390Open in IMG/M
3300018079|Ga0184627_10036355All Organisms → cellular organisms → Bacteria → Proteobacteria2508Open in IMG/M
3300018079|Ga0184627_10419012All Organisms → cellular organisms → Bacteria697Open in IMG/M
3300018081|Ga0184625_10073187All Organisms → cellular organisms → Bacteria1744Open in IMG/M
3300018084|Ga0184629_10105763All Organisms → cellular organisms → Bacteria1383Open in IMG/M
3300019879|Ga0193723_1088539All Organisms → cellular organisms → Bacteria882Open in IMG/M
3300021073|Ga0210378_10039021All Organisms → cellular organisms → Bacteria1885Open in IMG/M
3300021081|Ga0210379_10021640All Organisms → cellular organisms → Bacteria2440Open in IMG/M
3300022195|Ga0222625_1273851All Organisms → cellular organisms → Bacteria809Open in IMG/M
3300022563|Ga0212128_10809372All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300022694|Ga0222623_10050055All Organisms → cellular organisms → Bacteria1606Open in IMG/M
3300025160|Ga0209109_10147522All Organisms → cellular organisms → Bacteria1186Open in IMG/M
3300025310|Ga0209172_10506300All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium554Open in IMG/M
3300025318|Ga0209519_10583720All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium617Open in IMG/M
3300025319|Ga0209520_10257586All Organisms → cellular organisms → Bacteria → Proteobacteria1082Open in IMG/M
3300025901|Ga0207688_10790840All Organisms → cellular organisms → Bacteria601Open in IMG/M
3300025921|Ga0207652_11082926All Organisms → cellular organisms → Bacteria702Open in IMG/M
3300025922|Ga0207646_10493915All Organisms → cellular organisms → Bacteria1103Open in IMG/M
3300026051|Ga0208911_1016914All Organisms → cellular organisms → Bacteria693Open in IMG/M
3300026088|Ga0207641_12305021All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300026095|Ga0207676_10900599All Organisms → cellular organisms → Bacteria868Open in IMG/M
3300026524|Ga0209690_1002078All Organisms → cellular organisms → Bacteria11466Open in IMG/M
3300027654|Ga0209799_1006359All Organisms → cellular organisms → Bacteria2464Open in IMG/M
3300027775|Ga0209177_10397255All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300028807|Ga0307305_10084102All Organisms → cellular organisms → Bacteria1471Open in IMG/M
3300031573|Ga0310915_10626408All Organisms → cellular organisms → Bacteria762Open in IMG/M
3300031716|Ga0310813_10997556All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300031720|Ga0307469_11290014Not Available693Open in IMG/M
3300031858|Ga0310892_10412493All Organisms → cellular organisms → Bacteria882Open in IMG/M
3300031911|Ga0307412_11355204All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300032059|Ga0318533_11202011All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300032075|Ga0310890_11784693All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300033434|Ga0316613_10966626All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300033475|Ga0310811_10141003All Organisms → cellular organisms → Bacteria → Proteobacteria3050Open in IMG/M
3300034164|Ga0364940_0217018All Organisms → cellular organisms → Bacteria561Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment6.42%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil6.42%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.42%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere6.42%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.50%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.59%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil4.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.67%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands3.67%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment2.75%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil2.75%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.75%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands1.83%
Hot Spring SedimentEnvironmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment1.83%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)1.83%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.83%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.83%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.83%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.83%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.83%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand1.83%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere1.83%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.83%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.83%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.83%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.92%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.92%
Thermal SpringsEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs0.92%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.92%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.92%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil0.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.92%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.92%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.92%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.92%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.92%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.92%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.92%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.92%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.92%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.92%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.92%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.92%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000550Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemlyEnvironmentalOpen in IMG/M
3300000580Forest soil microbial communities from Amazon forest - 2010 replicate II A01EnvironmentalOpen in IMG/M
3300000787Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000793Forest soil microbial communities from Amazon forest - 2010 replicate II A001EnvironmentalOpen in IMG/M
3300000953Soil microbial communities from Great Prairies - Kansas Corn soilEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300003324Sugarcane bulk soil Sample H2EnvironmentalOpen in IMG/M
3300003993Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005169Soil and rhizosphere microbial communities from Laval, Canada - mgHPAEnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005289Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005829Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBCEnvironmentalOpen in IMG/M
3300005830Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.178_YBMEnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006865Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaGEnvironmentalOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006894Agricultural soil microbial communities from Utah to study Nitrogen management - NC ControlEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009081Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015EnvironmentalOpen in IMG/M
3300009091Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009167Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)EnvironmentalOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009609Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890EnvironmentalOpen in IMG/M
3300009814Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60EnvironmentalOpen in IMG/M
3300009837Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300011436Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT642_2EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012231Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2EnvironmentalOpen in IMG/M
3300012474Unplanted soil (control) microbial communities from North Carolina - M.Soil.3.yng.040610EnvironmentalOpen in IMG/M
3300012512Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510Host-AssociatedOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300014259Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1EnvironmentalOpen in IMG/M
3300014270Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1EnvironmentalOpen in IMG/M
3300014296Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D1EnvironmentalOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300018000Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coexEnvironmentalOpen in IMG/M
3300018052Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2EnvironmentalOpen in IMG/M
3300018075Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1EnvironmentalOpen in IMG/M
3300018079Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1EnvironmentalOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300019879Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2EnvironmentalOpen in IMG/M
3300021073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redoEnvironmentalOpen in IMG/M
3300021081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redoEnvironmentalOpen in IMG/M
3300022195Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022563OV2_combined assemblyEnvironmentalOpen in IMG/M
3300022694Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coexEnvironmentalOpen in IMG/M
3300025160Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2EnvironmentalOpen in IMG/M
3300025310Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025318Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1EnvironmentalOpen in IMG/M
3300025319Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1EnvironmentalOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026051Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300027654Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027775Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)EnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031911Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1Host-AssociatedOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300033434Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_bEnvironmentalOpen in IMG/M
3300033475Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YCEnvironmentalOpen in IMG/M
3300034164Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICChiseqgaiiDRAFT_226779333300000033SoilRRVDIGRDGPNHKKNLEACKLCKHALSDPDGVLLDLTD*
F24TB_1405983313300000550SoilAAPASAHRKIAIGREGETRQKNLEGCKLCKHALSDPDGVLLDLTD*
AF_2010_repII_A01DRAFT_104337933300000580Forest SoilASAARKIAIGREGEKRQKNLEACKLCRHALADPDGVLLDLTD*
JGI11643J11755_1134021713300000787SoilIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD*
AF_2010_repII_A001DRAFT_1011387113300000793Forest SoilLAATAPASAARKIAIGREGEKRQKNLEACKLCRHALADPDGVLLDLTD*
JGI11615J12901_1018008433300000953SoilRVDIGRDGPNHKKNLEACKLCKHALADPDGVLLDLTD*
JGI1027J12803_10205993613300000955SoilTIGREGEKRQKNLESCKLCRHALADPDGVLLDLTD*
soilH2_1001103693300003324Sugarcane Root And Bulk SoilSSPRKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0055468_1030200123300003993Natural And Restored WetlandsTAAPASAPRKIAIGRDGETRQKNLEGCKLCRQSLSDPDGVLLDLTD*
Ga0063356_10179555533300004463Arabidopsis Thaliana RhizosphereGAGHPESAARRVDIGRDGPNHLKNLEACKLCKHALADPDGVLLDLTD*
Ga0063356_10245754513300004463Arabidopsis Thaliana RhizosphereAEPKAGARKIAIGRDGEVREKNLQGCKLCKHAISDPDGVLLDLTD*
Ga0066395_1086053513300004633Tropical Forest SoilTLAATTPASAARKIAIGREGEKRQKNLEACKLCRHALADPDGVLLDLTD*
Ga0066810_1012324623300005169SoilLDALGAAHPESAARRVDIGRDGPNHMKNLEACKLCKHALSDPDGVLLDLTD*
Ga0066690_1044750313300005177SoilSGARKIATGRDGERRQKNLENCKLCKQSLSDPDGVLLDLTD*
Ga0065704_1002501533300005289Switchgrass RhizosphereAKKDVENLPNTVPGSAARKIAIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0065704_1019950313300005289Switchgrass RhizosphereAAPASAARKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0066388_10284181433300005332Tropical Forest SoilNTVPGSAARKIAIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0070680_10124041223300005336Corn RhizosphereALSASNPESKPRKVAIGREGEKHKANLEGCRLCKQSLSDPDGVLLDLTD*
Ga0070689_10054773933300005340Switchgrass RhizosphereSPASAPRKIAIGREGEKRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0070713_10139101513300005436Corn, Switchgrass And Miscanthus RhizosphereAAAAPASAPRKIAIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD*
Ga0068856_10202422613300005614Corn RhizosphereLEALAAAAPASAARKIAIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD*
Ga0066903_10475733933300005764Tropical Forest SoilRKVGVGREGERHRKNLEGCKLCKQGLSDPDGVLLDLTD*
Ga0066903_10721395513300005764Tropical Forest SoilIAIGRDGETRQKNLEGCRLCKYSLADPDGVLLDLTD*
Ga0074479_1010920733300005829Sediment (Intertidal)ESAARRVDIGRDGPNHMKNLEDCKLCKHALSDPDGVLLDLTD*
Ga0074473_1124110613300005830Sediment (Intertidal)PASAPRKIAIGREGEVRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0066696_1055973413300006032SoilRKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0075417_1074589823300006049Populus RhizosphereLETLAAAEPKSGARKIAIGRDGEVRQKNLEGCKLCKHAISDPDGVLLDLTD*
Ga0070716_10106424413300006173Corn, Switchgrass And Miscanthus RhizosphereEQTKKDLDALAAAAPGSAARKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0075421_10154329313300006845Populus RhizosphereIAIGREGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0075425_10139905213300006854Populus RhizosphereATAPDSAPRKIAIGRDGETRQKNLEGCRLCKYSLADPDGVLLDLTD*
Ga0073934_1008181443300006865Hot Spring SedimentGSAHRKIAIGRDGETRQKNLEGCKFCKLALSDPDGVLLDLTD*
Ga0075434_10186046423300006871Populus RhizosphereLQQTKKDLDDLAATAPSSAHRKIAIGREGETRQKNLEGCKLCKHALSDPDGILLDLTD*
Ga0068865_10110524133300006881Miscanthus RhizosphereIAIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD*
Ga0079215_1027003433300006894Agricultural SoilAIGRDGEVREKNLEGCKLCKHSLADPDGVLLDLTD*
Ga0066710_10149417613300009012Grasslands SoilNLEAAKKDIENLSNSAPGSGARKIAIGREGETRQKNLEACKLCRHALADPDGVLLDLTD
Ga0105098_1005333713300009081Freshwater SedimentKDIENLSSTVPGSAARKIAIGRDGETRQKNLEACRLCRHPLADPDGVLLDLTD*
Ga0102851_1221778313300009091Freshwater WetlandsDLDALRAAHPESAARRVDIGRDGPNHMKNLEACKLCKHALSDPDGVLLDLTD*
Ga0111539_1181717533300009094Populus RhizospherePASAPRKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0066709_10448472313300009137Grasslands SoilLAGSAPTSGARKIAIGRDGERRQKNLEDCKLCKQSLSDPDGVLLDLTD*
Ga0114129_1169074223300009147Populus RhizosphereETLAADEPKAGARKIAIGRDGEVREKNLEGCKLCKHAISDPDGVLLDLTD*
Ga0111538_1132162833300009156Populus RhizosphereRKIAIGREGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0113563_1083490613300009167Freshwater WetlandsAARRVDIGRDGPNHQKNLEGCKLCKHALSDPDGVLLDLTD*
Ga0105238_1189461733300009551Corn RhizosphereRKIAIGRDGETRQKNLAGCGLCKHPLADPDGVLLDLTD*
Ga0105347_125766713300009609SoilVGREGERHRKNLESCKLCKQGLSDPDGVLLDLTD*
Ga0105082_104645523300009814Groundwater SandSSPASASRKIAIGREGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0105058_100134713300009837Groundwater SandNLEAAKKDIENLPNTVPGSAARTIAIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0126384_1124056713300010046Tropical Forest SoilIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0126373_1273785223300010048Tropical Forest SoilPASAPRKIAIGRDGETRQKNLEGCRLCKYSLADPDGVLLDLTD*
Ga0134088_1004104113300010304Grasslands SoilAATAPASAHRKIAVGREGETRQKNFEGCKLCKHAISDPDGVLLDLTD*
Ga0134086_1003781713300010323Grasslands SoilQTKKDLDVLAGSAPTSGARKIAIGRDGERRQKNLEDCKLCKQSLSDPDGVLLDLTD*
Ga0126370_1016188813300010358Tropical Forest SoilAAKKDVENLPNTAPGSTARKITIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0126376_1283664223300010359Tropical Forest SoilPNTAPGSTARKITIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0126377_1181916213300010362Tropical Forest SoilARKITIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0105239_1023375413300010375Corn RhizosphereRKIAIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD*
Ga0137458_128260523300011436SoilRVDIGRDGPNHRKNLEACKLCKHALSDPDGVLLDLTD*
Ga0137389_1053293513300012096Vadose Zone SoilIENLTHTIPVSAARKIAIGREGEKRQKNLEACKLCRHALADPDGVLLDLTD*
Ga0137374_1094086523300012204Vadose Zone SoilPNTVPGSAARKIAIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0137465_114312313300012231SoilSSPASAPRKIAIGREGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0157356_102481623300012474Unplanted SoilPASAPRKIAIGREGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0157327_102547213300012512Arabidopsis RhizosphereAPRKIAIGREGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0137397_1028210533300012685Vadose Zone SoilAIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0137397_1099534113300012685Vadose Zone SoilAATPGSAARKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD*
Ga0137404_1057123913300012929Vadose Zone SoilKDIENLPNTAPGSTSRKISIGRDGETRQKNLEGCKLCRYPLADPDGVLLDLTD*
Ga0137404_1084943313300012929Vadose Zone SoilAKKDIENLPNTAPGSTSRKISIGRDGETRQKNLEGCKLCRYPLADPDGVLLDLTD*
Ga0126375_1048212913300012948Tropical Forest SoilRKIAIGREGEKRQKNLEACKLCRHALADPDGVLLDLTD*
Ga0126375_1091032813300012948Tropical Forest SoilRKITIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0164305_1144766413300012989SoilTVPGSAARKIAIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD*
Ga0075311_108042023300014259Natural And Restored WetlandsVENLSQTAPGSAARKIAIGRDGETRQKNLEACRLCKHPLADPDGVLLDLAD*
Ga0075325_107870033300014270Natural And Restored WetlandsRRVDVGRDGPKHKENLEGCKLCKQGLADPDGVLLDLTD*
Ga0075344_101122013300014296Natural And Restored WetlandsLATEFPASAPRNVDVGREGERHRKNLESCKLCKQGLSDPDGVLLDLTD*
Ga0157376_1243933413300014969Miscanthus RhizospherePASAPRKIAIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD*
Ga0182032_1067518613300016357SoilAPRKIAIGRDGETRQKNLEGCRLCKYSLADPDGVLLDLTD
Ga0184604_1035808113300018000Groundwater SedimentAPRKIAIGREGETRQKNLEGCKLCKQSLADPDGVLLDLTD
Ga0184638_112178753300018052Groundwater SedimentPAAAARKIAIGRDGPQRQKNLEGCKLCKHPLADPDGVLLDLTD
Ga0184632_1002822813300018075Groundwater SedimentQTKKDLEALAASTPASSARKIAIGREGETRQKNLEGCKLCKYPLADPDGVLLDLTD
Ga0184627_1003635543300018079Groundwater SedimentAKKDIENLPNTAPGSSARTIAIGRDGETRQKNLEGCKLCKYSLADPDGVLLDLTD
Ga0184627_1041901213300018079Groundwater SedimentRKIAVGREGEMRQKNFEGCKLCKHAISDPDGVLLDLTD
Ga0184625_1007318713300018081Groundwater SedimentLEALAASTPASSARKIAIGREGETRQKNLEGCKLCKYPLADPDGVLLDLTD
Ga0184629_1010576313300018084Groundwater SedimentKDLEALAATTPASSARKIAIGREGEKRQKNLEGCKLCKYPLADPDGVLLDLTD
Ga0193723_108853913300019879SoilLAAAAPGSAARKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD
Ga0210378_1003902133300021073Groundwater SedimentPASAHRKIAVGREGETRQKNFEGCKLCKHAISDPDGVLLDLTD
Ga0210379_1002164013300021081Groundwater SedimentNTVPGSAARKIAIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD
Ga0222625_127385133300022195Groundwater SedimentLDTLAATAPASAHRKIAVGREGETRQKNFEGCKLCKHAISDPDGVLLDLTD
Ga0212128_1080937223300022563Thermal SpringsPRKIAIGRDGETRRKNLEGCKLCRQSLSDPDGVLLDLTD
Ga0222623_1005005533300022694Groundwater SedimentASAHRKIAVGREGETRQKNFEGCKLCKHAISDPDGVLLDLTD
Ga0209109_1014752213300025160SoilGSAARNIAIGRDGETRQKNLQGCKLCKHALADPDGVLLDLTD
Ga0209172_1050630013300025310Hot Spring SedimentRKIAIGRDGETRQKNLEGCKFCKLALSDPDGVLLDLTD
Ga0209519_1058372023300025318SoilPASAPRKIAIGRDGETRQKNLEGCKLCRQSLSDPDGVLLDLTD
Ga0209520_1025758623300025319SoilRNIAIGRDGETRQKNLQGCKLCKHALADPDGVLLDLTD
Ga0207688_1079084013300025901Corn, Switchgrass And Miscanthus RhizosphereAARKITIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD
Ga0207652_1108292633300025921Corn RhizosphereESAPRKIAIGRDGETRQQNLEGCKLCKQSLADPDGVLLDLTD
Ga0207646_1049391533300025922Corn, Switchgrass And Miscanthus RhizosphereKDIENLAVNTPASAARKIAIGREGEKRQKNLEACKLCRHALADPDGVLLDLTD
Ga0208911_101691413300026051Natural And Restored WetlandsPRRVDVGRDGPKHKENLEGCKLCKQGLADPDGVLLDLTD
Ga0207641_1230502113300026088Switchgrass RhizosphereAPRRVDIGRDGANHLKNLEACKLCKHALSDPDGVLLDLTD
Ga0207676_1090059933300026095Switchgrass RhizosphereDALGAAHPESAARRVDIGRDGPNHKKNLEACKLCKHALSDPDGVLLDLTD
Ga0209690_1002078113300026524SoilSAPTSGARKIAIGRDGERRQKNLEDCKLCKQSLSDPDGVLLDLTD
Ga0209799_100635943300027654Tropical Forest SoilVENLPNTVPGSTARKITIGRDGETRQKNLEACKLCRYPLADPDGVLLDLTD
Ga0209177_1039725523300027775Agricultural SoilAPASAPRKIAIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD
Ga0307305_1008410233300028807SoilALAAAAPGSAARKIAIGRDGETRQKNLEGCKLCKQSLADPDGVLLDLTD
Ga0310915_1062640813300031573SoilAARRIAIGRDGEKRQKNLEACKLCRHALADPDGVLLDLTD
Ga0310813_1099755633300031716SoilKIAIGRDGETRQKNLEGCGLCKHPLADPDGVLLDLTD
Ga0307469_1129001413300031720Hardwood Forest SoilRKIDIGREGARRRQNLEACKLGGHATADPDGVLIDLSA
Ga0310892_1041249333300031858SoilLAAAAPASAPRKIAIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD
Ga0307412_1135520413300031911RhizosphereKVAIGRDGEKHKENLEGCKLCKQSLADPDGVLLDLTD
Ga0318533_1120201113300032059SoilIAIGRDGETRQKNLEGCRLCKYSLADPDGVLLDLTD
Ga0310890_1178469313300032075SoilDTLGAAHPESAARRVDIGRDGPNHMKNLEACKLCKHALSDPDGVLLDLTD
Ga0316613_1096662613300033434SoilGAAHPESAARRVDIGRDGPNHLKNLEGCKLCKHALSDPDGVLLDLTD
Ga0310811_1014100343300033475SoilKDLEALATAAPASAARKIAIGRDGETRQKNLEGCKLCKQSLSDPDGVLLDLTD
Ga0364940_0217018_2_1273300034164SedimentSAARKIAIGRDGPQRQKNLEGCKLCKQPLADPDGVLLDLTD

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.