Metagenome Family F089492

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089492
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	44 residues
Representative Sequence	MTLKNAALLALIGTILMTALLVWTFVFNSLNLLRGLVPAVTLF
Number of Associated Samples	95
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.09 %
% of genes near scaffold ends (potentially truncated)	92.66 %
% of genes from short scaffolds (< 2000 bps)	87.16 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.725 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (13.761 % of family members)
Environment Ontology (ENVO)	Unclassified (38.532 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (34.862 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.34% β-sheet: 0.00% Coil/Unstructured: 43.66%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF03695	UPF0149	7.34
PF00583	Acetyltransf_1	2.75
PF01738	DLH	2.75
PF16901	DAO_C	2.75
PF08240	ADH_N	2.75
PF03641	Lysine_decarbox	2.75
PF00106	adh_short	1.83
PF07228	SpoIIE	1.83
PF01965	DJ-1_PfpI	1.83
PF00881	Nitroreductase	1.83
PF05532	CsbD	0.92
PF00873	ACR_tran	0.92
PF00994	MoCF_biosynth	0.92
PF13432	TPR_16	0.92
PF14833	NAD_binding_11	0.92
PF16177	ACAS_N	0.92
PF08239	SH3_3	0.92
PF00107	ADH_zinc_N	0.92
PF00383	dCMP_cyt_deam_1	0.92
PF03781	FGE-sulfatase	0.92
PF04226	Transgly_assoc	0.92
PF04773	FecR	0.92
PF05163	DinB	0.92
PF14490	HHH_4	0.92
PF14300	DUF4375	0.92
PF04203	Sortase	0.92
PF13673	Acetyltransf_10	0.92
PF10162	G8	0.92
PF09286	Pro-kuma_activ	0.92
PF00069	Pkinase	0.92
PF01839	FG-GAP	0.92
PF14082	DUF4263	0.92
PF14236	DUF4338	0.92
PF04185	Phosphoesterase	0.92
PF13538	UvrD_C_2	0.92
PF00216	Bac_DNA_binding	0.92
PF13335	Mg_chelatase_C	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3079	Uncharacterized conserved protein YgfB, UPF0149 family	Function unknown [S]	7.34
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.67
COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	Nucleotide transport and metabolism [F]	2.75
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.92
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.92
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.92
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.92
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.92
COG3764	Sortase (surface protein transpeptidase)	Cell wall/membrane/envelope biogenesis [M]	0.92
COG4934	Serine protease, subtilase family	Posttranslational modification, protein turnover, chaperones [O]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.72 %
Unclassified	root	N/A	30.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.72 %
Unclassified	root	N/A	30.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.72 %
Unclassified	root	N/A	30.28 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	33.03 %
Unclassified	root	N/A	30.28 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	23.85 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.67 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.85 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.75 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.92 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.92 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.85 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.75 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.92 %
Pirellulales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales	0.92 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.92 %
Chloroflexales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Pirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae	0.92 %
Chloroflexineae	suborder	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae	0.92 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.92 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.85 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	0.92 %
Oscillochloridaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae → Oscillochloridaceae	0.92 %
Candidatus Anammoximicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Candidatus Anammoximicrobium	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.85 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	0.92 %
unclassified Candidatus Anammoximicrobium	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Candidatus Anammoximicrobium → unclassified Candidatus Anammoximicrobium	0.92 %
Oscillochloris	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae → Oscillochloridaceae → Oscillochloris	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.85 %
unclassified Oscillochloris	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae → Oscillochloridaceae → Oscillochloris → unclassified Oscillochloris	0.92 %
Candidatus Anammoximicrobium sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Candidatus Anammoximicrobium → unclassified Candidatus Anammoximicrobium → Candidatus Anammoximicrobium sp.	0.92 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	23.85 %
Oscillochloris sp. ZM17-4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae → Oscillochloridaceae → Oscillochloris → unclassified Oscillochloris → Oscillochloris sp. ZM17-4	0.92 %
Candidatus Anammoximicrobium sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Candidatus Anammoximicrobium → unclassified Candidatus Anammoximicrobium → Candidatus Anammoximicrobium sp.	0.92 %
Acidobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.92 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_100177917	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300000955\|JGI1027J12803_100751577	All Organisms → cellular organisms → Bacteria	1301	Open in IMG/M
3300001154\|JGI12636J13339_1048802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300001593\|JGI12635J15846_10228472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1209	Open in IMG/M
3300001593\|JGI12635J15846_10553101	All Organisms → cellular organisms → Bacteria → Proteobacteria	673	Open in IMG/M
3300002909\|JGI25388J43891_1057516	Not Available	583	Open in IMG/M
3300005439\|Ga0070711_102010388	Not Available	508	Open in IMG/M
3300005451\|Ga0066681_10839242	Not Available	553	Open in IMG/M
3300005518\|Ga0070699_100383714	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1269	Open in IMG/M
3300005591\|Ga0070761_10136915	All Organisms → cellular organisms → Bacteria	1429	Open in IMG/M
3300005610\|Ga0070763_10097780	Not Available	1476	Open in IMG/M
3300006102\|Ga0075015_100189471	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300009519\|Ga0116108_1012666	Not Available	3083	Open in IMG/M
3300009519\|Ga0116108_1251171	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300009551\|Ga0105238_12921317	Not Available	514	Open in IMG/M
3300009552\|Ga0116138_1056608	Not Available	1115	Open in IMG/M
3300009616\|Ga0116111_1017922	All Organisms → cellular organisms → Bacteria	2566	Open in IMG/M
3300009616\|Ga0116111_1071676	Not Available	935	Open in IMG/M
3300009616\|Ga0116111_1163429	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300009617\|Ga0116123_1121549	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	685	Open in IMG/M
3300009631\|Ga0116115_1005438	All Organisms → cellular organisms → Bacteria	4340	Open in IMG/M
3300009637\|Ga0116118_1114771	Not Available	894	Open in IMG/M
3300009643\|Ga0116110_1264200	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300009644\|Ga0116121_1107779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	874	Open in IMG/M
3300009665\|Ga0116135_1001422	All Organisms → cellular organisms → Bacteria	12047	Open in IMG/M
3300009700\|Ga0116217_10322733	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	989	Open in IMG/M
3300009759\|Ga0116101_1042891	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	957	Open in IMG/M
3300009824\|Ga0116219_10262033	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	979	Open in IMG/M
3300010341\|Ga0074045_10189708	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1381	Open in IMG/M
3300010358\|Ga0126370_12579400	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300010366\|Ga0126379_13396358	Not Available	533	Open in IMG/M
3300010376\|Ga0126381_103762297	Not Available	593	Open in IMG/M
3300010379\|Ga0136449_100959310	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300010379\|Ga0136449_101749904	Not Available	933	Open in IMG/M
3300012199\|Ga0137383_10265573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1257	Open in IMG/M
3300012203\|Ga0137399_11280489	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300012208\|Ga0137376_10260858	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1503	Open in IMG/M
3300012210\|Ga0137378_10127248	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2354	Open in IMG/M
3300012357\|Ga0137384_10615642	Not Available	885	Open in IMG/M
3300012927\|Ga0137416_10780793	Not Available	844	Open in IMG/M
3300012930\|Ga0137407_12415917	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp.	502	Open in IMG/M
3300014156\|Ga0181518_10076091	All Organisms → cellular organisms → Bacteria	1925	Open in IMG/M
3300014158\|Ga0181521_10218593	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300014164\|Ga0181532_10225203	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300014201\|Ga0181537_10996170	All Organisms → cellular organisms → Bacteria → Acidobacteria	567	Open in IMG/M
3300014489\|Ga0182018_10002743	All Organisms → cellular organisms → Bacteria	16997	Open in IMG/M
3300014493\|Ga0182016_10603661	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300014638\|Ga0181536_10070454	All Organisms → cellular organisms → Bacteria	2137	Open in IMG/M
3300014638\|Ga0181536_10182337	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300015371\|Ga0132258_11292849	All Organisms → cellular organisms → Bacteria	1843	Open in IMG/M
3300017822\|Ga0187802_10432258	Not Available	523	Open in IMG/M
3300017925\|Ga0187856_1290710	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300017935\|Ga0187848_10068047	All Organisms → cellular organisms → Bacteria	1674	Open in IMG/M
3300017946\|Ga0187879_10180249	Not Available	1187	Open in IMG/M
3300017955\|Ga0187817_10820521	Not Available	594	Open in IMG/M
3300018002\|Ga0187868_1287407	Not Available	546	Open in IMG/M
3300018005\|Ga0187878_1195257	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	759	Open in IMG/M
3300018008\|Ga0187888_1146657	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	968	Open in IMG/M
3300018015\|Ga0187866_1088670	All Organisms → cellular organisms → Bacteria → Acidobacteria	1300	Open in IMG/M
3300018016\|Ga0187880_1042712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2470	Open in IMG/M
3300018016\|Ga0187880_1091932	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300018022\|Ga0187864_10188304	Not Available	987	Open in IMG/M
3300018022\|Ga0187864_10329993	Not Available	673	Open in IMG/M
3300018030\|Ga0187869_10398143	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300018042\|Ga0187871_10212718	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300018042\|Ga0187871_10524879	Not Available	655	Open in IMG/M
3300018046\|Ga0187851_10856738	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300018482\|Ga0066669_11359797	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300020170\|Ga0179594_10316867	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Candidatus Anammoximicrobium → unclassified Candidatus Anammoximicrobium → Candidatus Anammoximicrobium sp.	591	Open in IMG/M
3300020583\|Ga0210401_11044325	Not Available	676	Open in IMG/M
3300021180\|Ga0210396_10402632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1203	Open in IMG/M
3300021401\|Ga0210393_10983868	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300021405\|Ga0210387_11197046	Not Available	660	Open in IMG/M
3300021432\|Ga0210384_10905647	Not Available	782	Open in IMG/M
3300021432\|Ga0210384_11687724	Not Available	539	Open in IMG/M
3300022557\|Ga0212123_10652293	Not Available	655	Open in IMG/M
3300022732\|Ga0224569_105626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae → Oscillochloridaceae → Oscillochloris → unclassified Oscillochloris → Oscillochloris sp. ZM17-4	926	Open in IMG/M
3300025472\|Ga0208692_1055441	All Organisms → cellular organisms → Bacteria → Acidobacteria	914	Open in IMG/M
3300025527\|Ga0208714_1027244	All Organisms → cellular organisms → Bacteria	1351	Open in IMG/M
3300025533\|Ga0208584_1161944	Not Available	502	Open in IMG/M
3300025922\|Ga0207646_11591079	Not Available	564	Open in IMG/M
3300026078\|Ga0207702_12093188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300026116\|Ga0207674_10665846	Not Available	1005	Open in IMG/M
3300027394\|Ga0209904_1000578	All Organisms → cellular organisms → Bacteria	3350	Open in IMG/M
3300027502\|Ga0209622_1044088	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300027660\|Ga0209736_1082563	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	883	Open in IMG/M
3300027812\|Ga0209656_10532661	Not Available	510	Open in IMG/M
3300027853\|Ga0209274_10331232	Not Available	783	Open in IMG/M
3300027908\|Ga0209006_10742485	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300028565\|Ga0302145_10036013	All Organisms → cellular organisms → Bacteria	1772	Open in IMG/M
3300029903\|Ga0247271_106721	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1924	Open in IMG/M
3300029918\|Ga0302143_1118246	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300029943\|Ga0311340_10790513	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300029954\|Ga0311331_10164982	All Organisms → cellular organisms → Bacteria	2616	Open in IMG/M
3300030057\|Ga0302176_10162757	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300030058\|Ga0302179_10028243	All Organisms → cellular organisms → Bacteria	2632	Open in IMG/M
3300030509\|Ga0302183_10409368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300031028\|Ga0302180_10034105	All Organisms → cellular organisms → Bacteria	3163	Open in IMG/M
3300031028\|Ga0302180_10353271	Not Available	745	Open in IMG/M
3300031525\|Ga0302326_13374355	All Organisms → cellular organisms → Bacteria → Acidobacteria	534	Open in IMG/M
3300031711\|Ga0265314_10015117	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6138	Open in IMG/M
3300031753\|Ga0307477_10390985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	953	Open in IMG/M
3300031823\|Ga0307478_11541475	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300031962\|Ga0307479_10576206	Not Available	1108	Open in IMG/M
3300032160\|Ga0311301_10649849	All Organisms → cellular organisms → Bacteria	1501	Open in IMG/M
3300032205\|Ga0307472_100382148	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1170	Open in IMG/M
3300032205\|Ga0307472_100783438	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	869	Open in IMG/M
3300032205\|Ga0307472_101446863	All Organisms → cellular organisms → Bacteria → Acidobacteria	669	Open in IMG/M
3300033888\|Ga0334792_004758	All Organisms → cellular organisms → Bacteria	6279	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.50%
Host-Associated	Host-Associated	5.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.80%
Aquatic	Environmental → Aquatic	36.70%
Plants	Host-Associated → Plants	5.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.71%
Freshwater	Environmental → Aquatic → Freshwater	34.86%
Peat	Environmental → Terrestrial → Peat	10.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%
Sediment	Environmental → Aquatic → Sediment	0.92%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	34.86%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.03%
Loam	Environmental → Terrestrial → Soil → Loam	11.01%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.83%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	20.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.60%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	12.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.01%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.26%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.59%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.83%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	13.76%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	12.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.34%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.50%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.50%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.83%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.92%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.92%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.92%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.92%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.92%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001154	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009552	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150	Environmental	Open in IMG/M
3300009616	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_100	Environmental	Open in IMG/M
3300009617	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009637	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018015	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022732	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1	Host-Associated	Open in IMG/M
3300025472	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100 (SPAdes)	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025533	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027394	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712P3D	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028565	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_3	Environmental	Open in IMG/M
3300029903	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703	Environmental	Open in IMG/M
3300029918	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_1	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031711	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG	Host-Associated	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033888	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-3-X1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1001779172	3300000955	Soil	MTLKNAALLALIGTILMTALQLWTFVITFLNVLRDLVPW*
JGI1027J12803_1007515772	3300000955	Soil	MTLKNAALLALIGTILMTALLVWNFVVTFLNVLRDLVPAVSLF
JGI12636J13339_10488023	3300001154	Forest Soil	MTLKNAALLALIGTVLITALLAWTFVLNVVDVLRGLLPAVILFSSFIHAFACFC
JGI12635J15846_102284722	3300001593	Forest Soil	MTLKNAALLALIGTVLMTALLVWTFVFNFLNLLRGWFLR
JGI12635J15846_105531012	3300001593	Forest Soil	MTLKNAALLPLIGTMLMTALLVWVFVSNLVNVLRGVDAPVVLFS
JGI25388J43891_10575162	3300002909	Grasslands Soil	MTLKNAALLALIGTILITVLLVWTFFFNVVNVLRGLVPALTLFSS
Ga0070711_1020103881	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTLKNAALLALIGTILATVLLVCTFVFSFVNVLRGLAPPL
Ga0066681_108392422	3300005451	Soil	MTLKGAALLALIGTILMTALLLWTFVVTFLNVLGDLVPAVTLL
Ga0070699_1003837144	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MTLKNAALLALIGTILGTVLLVWTFIFDVVNVLRGLVPALTLFSSFI
Ga0070761_101369153	3300005591	Soil	MPAMTLKNAALLALIGTILITVLLVWDFIFNVLNVLRGLIP
Ga0070763_100977801	3300005610	Soil	MTLKNAALLALIGTILITALLVWDFVFNVLNVLRGLIPVTMLFSSFIY
Ga0075015_1001894712	3300006102	Watersheds	MTLKNAALLALIGTILMTALLVWSFVLTLLNVVRDLVPA
Ga0116108_10126661	3300009519	Peatland	MTLKNAALLALVGTILMTVLLVWNFVSNVLNVLRGVEAPIVLF
Ga0116108_12511711	3300009519	Peatland	MTLKNAALLALVGTILMTVLLVWNFVSNVLNVLRGVEAPIVLFASFIYAFGC
Ga0105238_129213171	3300009551	Corn Rhizosphere	MTLKKAALLALAGMILVTVLLVWDLVFNLLNVLRGLVPAVMLFSSFIYAFAAL
Ga0116138_10566081	3300009552	Peatland	LLVLIGTILITALLVWTFVFNFLNVLRGLVPAVMLFSSFIYAF
Ga0116111_10179221	3300009616	Peatland	MTLKNAALLALIGTILMTALLVWTFVFNFLNLLRGL
Ga0116111_10716761	3300009616	Peatland	LLVLIGTILITALLVWTFVFNFLNVLRGLVPAVMLFSSFIYAFGC
Ga0116111_11634291	3300009616	Peatland	MTPKNAALLALIGTILMTVLLVWQFVFNFLNLLRGLVPA
Ga0116123_11215491	3300009617	Peatland	MTLKNATLLALVGTILMTVLLVWNFVSNVLNVLRGVEAPIV
Ga0116115_10054381	3300009631	Peatland	MTLKNAALLALVGTLLMTVLLVWNFVFTFLNVLRDLVPAVTRFSSFIYAF
Ga0116118_11147711	3300009637	Peatland	MTVKNAALLALVGTTLITALLLWRFVFNFLNVLRDLVPAVVLFSS
Ga0116110_12642001	3300009643	Peatland	MTLKNAALLALVGTVLMTALLAWNFVSNVLNVLRGAEAPIVLFASFIYAFG
Ga0116121_11077791	3300009644	Peatland	MTLKNAALLALVGTVLMTALLAWNFVSNVLNVLRGAEAPIVLFASFIYAFGC
Ga0116135_100142212	3300009665	Peatland	MTLKNAALLALIGMVLMTALLVWNFVLTLLNVLRDLVPAVTLFS
Ga0116217_103227331	3300009700	Peatlands Soil	MTLKNAALLALVGTILMTVLLVWNFVFTFLNVLRDLVPAVMLFS
Ga0116101_10428911	3300009759	Peatland	MTLKNAALLALIGTVLMTALLLWNFALTLLNVLRDLVPAVTLFSSLIYA
Ga0116219_102620331	3300009824	Peatlands Soil	MTLKNAALLALIGTILMTALLVWQFVFNLLNLLRGVVLAVMVF
Ga0074045_101897083	3300010341	Bog Forest Soil	MTLKNAALLALIGTILITALLVWTFVFTILNFLRGVVPAV
Ga0126370_125794001	3300010358	Tropical Forest Soil	MTLKNAALLALIGTILMTALLVWTFVVNVLNALRGL
Ga0126379_133963581	3300010366	Tropical Forest Soil	MLNTPIMTLKNVALLALTGTILMTALLVWTCIFNVLNAVRGLVPAVTMLSSFIYAFG
Ga0126381_1037622972	3300010376	Tropical Forest Soil	MTLKNAALLALIGTILLTALLLWTFVLNLLNVLRELVPAV
Ga0136449_1009593101	3300010379	Peatlands Soil	MTLKNAALLALVGTILMTVLLVWNFVFTFLNVLRDLVPAVALFSSFIYA
Ga0136449_1017499042	3300010379	Peatlands Soil	MTLKNAALLALVGTTLITALLLWRFVFNFLNVLRDL
Ga0137383_102655731	3300012199	Vadose Zone Soil	MTLKNAALLALIGTILITVLLVWTFVFDVLNALRGLVP
Ga0137399_112804892	3300012203	Vadose Zone Soil	MTLKNAALLALIGTILATVFLTWPFIMTALNVLRGLAPPLMLFPWFVYGL
Ga0137376_102608581	3300012208	Vadose Zone Soil	MTLKNAALLALIGTILITVLLVWTFFFNVVNVLRGLVPALTLFSSFIYAFACL
Ga0137378_101272481	3300012210	Vadose Zone Soil	MTLKNAALMALFGTILMTALLVWAFVLTFLNILRGLVPAVTLFSSFIYAF
Ga0137384_106156421	3300012357	Vadose Zone Soil	MTLKNAALMALFGTILMTALLVWALVLTFLNILRGL
Ga0137416_107807931	3300012927	Vadose Zone Soil	MTVKNAALLALIGTILATVLLVWTFVSTALNVLRGLAPAVMLFPL
Ga0137407_124159173	3300012930	Vadose Zone Soil	MTLKNAALLALIGTILATVLLVWTFVFNFVNVLRGLA
Ga0181518_100760911	3300014156	Bog	VTLKNAALLALVGTILMTVLLVWNFVSNVLNVLRGVEAPIVLF
Ga0181521_102185931	3300014158	Bog	MTLKNAALLALVGTILMTVLLVWNFVSNVLNVLRG
Ga0181532_102252033	3300014164	Bog	MTVKNAALLALIGTLLITVVLVWTFAFNVLNALRGLIPAVM
Ga0181537_109961701	3300014201	Bog	MTLKNAALLALIGTVLVTALLTWTFIFNFLNVLRGLVP
Ga0182018_100027431	3300014489	Palsa	MTLKNAALLALIGTVLMTALLVWNFVFNLINLLRGLVPAVTLF
Ga0182016_106036611	3300014493	Bog	MTLKAAAFLALIGTILMTVLLVWNFALTLINVLRDLVPAVTLF
Ga0181536_100704541	3300014638	Bog	VTLKNAALLALVGTILMTVLLVWNFVSNVLNVLRGVEAPIV
Ga0181536_101823371	3300014638	Bog	MTLKNAALLALIGTILMTALLLWNFVSNLLNVLRGVEAPIVLFASFIYAF
Ga0132258_112928492	3300015371	Arabidopsis Rhizosphere	MTLKNAALLALIGTILMTALQLWTFVITFLNVLRDLVPAR*
Ga0187802_104322581	3300017822	Freshwater Sediment	MTLKNAALLALIGTVLMTALLGLTFVFNVINALRGLIPALTLFSSFIYAF
Ga0187856_12907101	3300017925	Peatland	MTLKNVALLALVGTILMTALLVWNFVFNLLNLLRGLVPAVTLFSSFI
Ga0187848_100680471	3300017935	Peatland	MTLKNAALLALVGTILMTVLLVWNFVSNVLNVLRGVEA
Ga0187879_101802491	3300017946	Peatland	LLVLIGTILITALLVWNFVFTFLNVLRDLVPAVTLFSSLIYAFGSLS
Ga0187817_108205212	3300017955	Freshwater Sediment	MPAMTLKNAALLALIGTILATALLVWTFAFNVLNVLRGLVPAIALFSSFIY
Ga0187868_12874072	3300018002	Peatland	MTLKNAALLALIGTVLMTALLVWTFVFNFLNLLQGLVPAVVFGSGPV
Ga0187878_11952572	3300018005	Peatland	MTLKNAALLALVGTILMTVLLVWNFVFTFLNVLRDLVPAV
Ga0187888_11466571	3300018008	Peatland	MTLKNAALLALVGTILMTVLLVWNFVSNVLNVLRGVEAPIV
Ga0187866_10886701	3300018015	Peatland	MTLKNAALLALIGTVLMTALLVWQFVFNLLNLLRGLVPAVTLFS
Ga0187880_10427123	3300018016	Peatland	MTLKNAALLALIGTILITALLVWPFVFNVLNVLRGLVPAVMLFSSFI
Ga0187880_10919323	3300018016	Peatland	MTLKNGALLALIGTILMTVLLVWTFVFNFLNLLRGLVPAVTLFSSLIYAFG
Ga0187864_101883042	3300018022	Peatland	MTLKNAALLALVGTILMTALLVWNFVSNVVNVLRGVDAPVVLFHSLIF
Ga0187864_103299931	3300018022	Peatland	MTVKNAALLALVGTTLITALLLWRFVFNFLNVLRDLVPAVVLFSSFIEAF
Ga0187869_103981431	3300018030	Peatland	MTLKNAALLALIGTALMTGFLVWNFVLTFLNVLRDSVPAVTRF
Ga0187871_102127181	3300018042	Peatland	MTLKNAALLALVGTILMTVLLVWNFVLTLLNVLRDLVPP
Ga0187871_105248792	3300018042	Peatland	MTLKNAALLALIGTILMTVLLVWNFVSNVLNVLRGAEAPIVLFASFIYAF
Ga0187851_108567381	3300018046	Peatland	MTLKSAALLALVGTILMTVLLVWNFVLTLLNVLRDLVPPVRL
Ga0066669_113597971	3300018482	Grasslands Soil	MTLKNAALLALIGTILMTALLVWTFVLTFLNVLRDLVPAM
Ga0179594_103168671	3300020170	Vadose Zone Soil	MTLKNAALLALIGTILATVLLVWTFVFNFVNVLRGLAPPVLL
Ga0210401_110443251	3300020583	Soil	MTLNNAALLALTGTILMTALLLCTFVLTFLNVLRDLVPAVTLFT
Ga0210396_104026321	3300021180	Soil	MTLKNAALLALIGTILMTALLLWTFVSNMINVLRGVDAPVVLFSSFLYAFGCF
Ga0210393_109838682	3300021401	Soil	MTLKNAALLALIGTILMTALLLQSFVLTFLNVLRDLVPAVTLFQS
Ga0210387_111970461	3300021405	Soil	MTLKNAALLALIGTILLTALLLWNFIFNLLNLLRGLIP
Ga0210384_109056471	3300021432	Soil	MTLKNAALLALTGTILMTALLLCTFVLTFLNVLRDLVPAVTLFTSF
Ga0210384_116877241	3300021432	Soil	MTLKNAALLALIGTILATVLLVCIFVFNFVNVLRGLAPPL
Ga0212123_106522931	3300022557	Iron-Sulfur Acid Spring	MTIKNAALLALVGTILMTALLLWTFVFTVLNVLRGVVPAVMLFQSFIYALAASA
Ga0224569_1056261	3300022732	Rhizosphere	MTLKSATLLALIGTILMTALLAWDFAFTVLNVLRGVV
Ga0208692_10554412	3300025472	Peatland	MTLKNAALLALIGTVLMTALLVWQFVFNLLNLLRGLVPAVTLFSSFIY
Ga0208714_10272442	3300025527	Arctic Peat Soil	MTLKNAALLALIGTILMTALLVWTFVFNSLNLLRGLVPAVTLF
Ga0208584_11619442	3300025533	Arctic Peat Soil	MTLKNAALLALIGTILMTALLVWTFVFNFLNLLRGLV
Ga0207646_115910791	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MTLKNAALLALIGTIMMAALLVWVFVSNVVNVLRGVDAPVVLF
Ga0207702_120931883	3300026078	Corn Rhizosphere	MTLKNAALLALIGTILMTALLLWTFVLTFLNVLRDLVPAVTLFQSFVYA
Ga0207674_106658463	3300026116	Corn Rhizosphere	MTLKKAALLALAGMILVTVLLVWDLVFNLLNVLRGLVPAVMLFSS
Ga0209904_10005785	3300027394	Thawing Permafrost	MTLKNAALLALIGTILMTALLVWTFVFNFLNLLRGLVPAVTLFQSFIYAF
Ga0209622_10440882	3300027502	Forest Soil	MTLKNAALLALIGTVLMTALLVWNFVFNLLNLLRGL
Ga0209736_10825631	3300027660	Forest Soil	MTLKNAALLALIGTILVTALLVWTFVFNVVNVLRGLVPALT
Ga0209656_105326611	3300027812	Bog Forest Soil	MTLKNAAVLALVGTILMTVLLMWNFVSNVLNVLRGVQA
Ga0209274_103312321	3300027853	Soil	MPAMTLKNAALLALIGTILITVLLVWDFIFNVLNVLRGLIPATMLFS
Ga0209006_107424851	3300027908	Forest Soil	MTIKNAALLALAGTILMTALLLWTFVFTVLNVLRGV
Ga0302145_100360131	3300028565	Bog	MTLKNAALLALVGTILMTVLLVWNFVSNVLHVLRGVEAPIVLFASFIYAFGCL
Ga0247271_1067214	3300029903	Soil	MTLKNASLLALVGTILMTVLSVWNFVLTLLNVLRDLVPPVRLFSS
Ga0302143_11182461	3300029918	Bog	MTLKAAAFLALIGTILMTVLLVWNFALTLINVLRDLVP
Ga0311340_107905132	3300029943	Palsa	MTLKNAALLALIGTILMTALLVWDFVFTVLNVLRGVIPAVMLFHSFIYAFGCS
Ga0311331_101649821	3300029954	Bog	MTLKAAAFLALIGTILMTVLLVWNFALTLINVLRDLVPAV
Ga0302176_101627571	3300030057	Palsa	MTLKNAALLALIGTILMTALLVWDFVFTVLNVLRGVIPAVMLFHSFIYAF
Ga0302179_100282432	3300030058	Palsa	MTLKNAALLALIGTILMTALLVWDFVFTVLNVLRGVIPAVMLF
Ga0302183_104093682	3300030509	Palsa	MTLKNAALLALIGTILMTALLVWTFVLTFLNVLRDLVPAATLFQSFIYAF
Ga0302180_100341051	3300031028	Palsa	MTLKNAALLGLIGTTLLTALLVWNFLIACLNVMRDLIPPVALFSSLI
Ga0302180_103532712	3300031028	Palsa	MTLKNAALLALIGTILMRALMVWPLVLTFLNVLRDGFRR
Ga0302326_133743552	3300031525	Palsa	MTLKNAALLALIGTVLVTALLTWTFIFNFLDVLRGLVPPVA
Ga0265314_100151175	3300031711	Rhizosphere	MTLKNAGLLAFVGTMVMTILLVWNLVFNLLNLLRGLVPAVTAFSSFICV
Ga0307477_103909851	3300031753	Hardwood Forest Soil	MTLKNAALLALIGTILMTALLVWTLVLTFLNVLRDLVPAVTLFSSF
Ga0307478_115414751	3300031823	Hardwood Forest Soil	MTLKNAALLALTGTVLITALLVWTFVFNVVDVLRGLLPAVI
Ga0307479_105762063	3300031962	Hardwood Forest Soil	MTIKNAALLAVIGTILMTALLLWSFVLTFLNVLRDLVPAVTLFSS
Ga0311301_106498491	3300032160	Peatlands Soil	MTVKNAALLALIGTLLITVLLVWTFVFNVLNALRGLIPAVLLFS
Ga0307472_1003821482	3300032205	Hardwood Forest Soil	MTVKNAALLALIGTILATVLLVWTFVSTALNVLRGLAP
Ga0307472_1007834383	3300032205	Hardwood Forest Soil	MTLKNAALLALIGTILITALLVWTFALNVLNVLRGAVPAVI
Ga0307472_1014468632	3300032205	Hardwood Forest Soil	MTLKTASLLALIGTVLVTALLTWNLIFSVVNVLRGLLPAAVLFPA
Ga0334792_004758_3_116	3300033888	Soil	MTLKNAALLALIGTILMTALLLWTFVFTFLNVLRNVVP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089492

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences