Metagenome Family F089548

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089548
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	45 residues
Representative Sequence	MKIEELENAPQWLLDADTNFADVEIIDGIVHWNGGVWKEGVWQNGV
Number of Associated Samples	60
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	96.00 %
% of genes near scaffold ends (potentially truncated)	22.94 %
% of genes from short scaffolds (< 2000 bps)	22.02 %
Associated GOLD sequencing projects	32
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (91.743 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (89.908 % of family members)
Environment Ontology (ENVO)	Unclassified (91.743 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (86.239 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 9.46% β-sheet: 18.92% Coil/Unstructured: 71.62%
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Predicted 3D Structure

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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF04098	Rad52_Rad22	2.75
PF13481	AAA_25	1.83
PF01520	Amidase_3	0.92
PF09250	Prim-Pol	0.92
PF00583	Acetyltransf_1	0.92
PF05565	Sipho_Gp157	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.74 %
All Organisms	root	All Organisms	8.26 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.74 %
Viruses	superkingdom	All Organisms → Viruses	5.50 %
cellular organisms	root	All Organisms → cellular organisms	2.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.74 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.50 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.74 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.50 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.74 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.50 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	91.74 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.50 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005512\|Ga0074648_1080637	All Organisms → Viruses → Predicted Viral	1224	Open in IMG/M
3300005613\|Ga0074649_1249880	Not Available	515	Open in IMG/M
3300006025\|Ga0075474_10239756	Not Available	547	Open in IMG/M
3300006026\|Ga0075478_10076271	All Organisms → Viruses → Predicted Viral	1081	Open in IMG/M
3300006026\|Ga0075478_10261841	Not Available	516	Open in IMG/M
3300006027\|Ga0075462_10012807	All Organisms → Viruses → Predicted Viral	2705	Open in IMG/M
3300006802\|Ga0070749_10303053	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300006867\|Ga0075476_10205246	Not Available	716	Open in IMG/M
3300006868\|Ga0075481_10204343	Not Available	705	Open in IMG/M
3300006870\|Ga0075479_10086776	All Organisms → Viruses → Predicted Viral	1305	Open in IMG/M
3300006919\|Ga0070746_10416179	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	600	Open in IMG/M
3300007344\|Ga0070745_1332680	Not Available	536	Open in IMG/M
3300007541\|Ga0099848_1182241	Not Available	762	Open in IMG/M
3300007960\|Ga0099850_1285830	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300022158\|Ga0196897_1047563	Not Available	508	Open in IMG/M
3300022167\|Ga0212020_1078776	Not Available	553	Open in IMG/M
3300022176\|Ga0212031_1080816	Not Available	554	Open in IMG/M
3300022183\|Ga0196891_1030726	All Organisms → Viruses → Predicted Viral	1008	Open in IMG/M
3300022198\|Ga0196905_1156130	Not Available	585	Open in IMG/M
3300025647\|Ga0208160_1057308	All Organisms → Viruses → Predicted Viral	1089	Open in IMG/M
3300025653\|Ga0208428_1106453	Not Available	786	Open in IMG/M
3300025671\|Ga0208898_1158739	Not Available	600	Open in IMG/M
3300025815\|Ga0208785_1126055	Not Available	608	Open in IMG/M
3300034374\|Ga0348335_095150	Not Available	956	Open in IMG/M
3300034374\|Ga0348335_119308	Not Available	785	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	92.66%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	7.34%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	91.74%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	3.67%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	3.67%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	91.74%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	3.67%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment	2.75%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.92%
Epilimnion	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion	0.92%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	89.91%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	3.67%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment	2.75%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.83%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.92%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001419	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m)	Environmental	Open in IMG/M
3300005512	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water	Environmental	Open in IMG/M
3300005613	Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment	Environmental	Open in IMG/M
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental	Open in IMG/M
3300006026	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA	Environmental	Open in IMG/M
3300006027	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA	Environmental	Open in IMG/M
3300006637	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01	Environmental	Open in IMG/M
3300006867	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA	Environmental	Open in IMG/M
3300006868	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA	Environmental	Open in IMG/M
3300006869	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA	Environmental	Open in IMG/M
3300006870	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA	Environmental	Open in IMG/M
3300006874	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300007344	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4	Environmental	Open in IMG/M
3300007345	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30	Environmental	Open in IMG/M
3300007346	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007541	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG	Environmental	Open in IMG/M
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental	Open in IMG/M
3300007640	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28	Environmental	Open in IMG/M
3300007960	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG	Environmental	Open in IMG/M
3300008012	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA	Environmental	Open in IMG/M
3300010299	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA	Environmental	Open in IMG/M
3300017963	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_3_D_1 metaG	Environmental	Open in IMG/M
3300017987	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_MS_1 metaG	Environmental	Open in IMG/M
3300018080	Hypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG	Environmental	Open in IMG/M
3300022057	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)	Environmental	Open in IMG/M
3300022067	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)	Environmental	Open in IMG/M
3300022068	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)	Environmental	Open in IMG/M
3300022071	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v2)	Environmental	Open in IMG/M
3300022158	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v3)	Environmental	Open in IMG/M
3300022167	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)	Environmental	Open in IMG/M
3300022168	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2)	Environmental	Open in IMG/M
3300022176	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)	Environmental	Open in IMG/M
3300022183	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)	Environmental	Open in IMG/M
3300022187	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)	Environmental	Open in IMG/M
3300022198	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)	Environmental	Open in IMG/M
3300022200	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)	Environmental	Open in IMG/M
3300025610	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025646	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025647	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025653	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025671	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)	Environmental	Open in IMG/M
3300025687	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025751	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025759	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)	Environmental	Open in IMG/M
3300025769	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)	Environmental	Open in IMG/M
3300025771	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025815	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025818	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025840	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025853	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)	Environmental	Open in IMG/M
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental	Open in IMG/M
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental	Open in IMG/M
3300034374	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)	Environmental	Open in IMG/M
3300034375	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11705J14877_101997872	3300001419	Saline Water And Sediment	MRIEELENAPQWLLDADTKLSNVEIIDGVVHWYGGVWEDGVWEGGI
Ga0074648_10806371	3300005512	Saline Water And Sediment	MRIEELENAPQWLLDADTKLSNVEIIDGVVHWYGGVWEDGVWEGGIWHNGFFEGGT
Ga0074649_11234832	3300005613	Saline Water And Sediment	MKIEELENAPQWLLDADTANADVEISGDGKVIWHDG
Ga0074649_12498802	3300005613	Saline Water And Sediment	MKIKELANAPQWLLDAKTEDADVEIIDGIVHWYGGFWEYGVWQGGT
Ga0075474_100776853	3300006025	Aqueous	MKIEELENAPQWLLDADTNFADVEIIDGIVHWNGGVWKEGVWQNGV
Ga0075474_102051281	3300006025	Aqueous	MRIEELENPPQWLLDANTAFVNVEIIDGIVHWNGGVWRDGIWRN
Ga0075474_102397562	3300006025	Aqueous	MKIKELANTPQWLLDAKTEDADVEIIDGIVHWYGGFWEYGVWQGGTWY
Ga0075478_100762711	3300006026	Aqueous	MKIEELKDAPQWLLDADTNFADVEIIDGIVHWNGGV
Ga0075478_101219584	3300006026	Aqueous	MKIKELENPPQWLLDANTAFANVEIIDGIVHWNGGV
Ga0075478_101521393	3300006026	Aqueous	MKIEELENPPQWLLDANTAFVNVEIIDGIVHWNGGVWRD
Ga0075478_102618412	3300006026	Aqueous	MRIEELENAPQWLLDAYTEDADVEILSGVVYWYDGSWKNGNWHAGTW
Ga0075462_100128071	3300006027	Aqueous	MKIEELKDAPQWLLDADTNFADVEIIDGIVHWNGGVWK
Ga0075461_101968983	3300006637	Aqueous	MKIKELANAPQWLLDAKTEDADVEIIDGIVHWYGGFWEYGVWQGGTWY
Ga0075461_102617871	3300006637	Aqueous	MKIEELENPPQWLLDANTAFVNVEIIDGIVHWNGGVWRDGIWRNGVWKDGIWAN
Ga0070749_1001268812	3300006802	Aqueous	MRIEELENPPQWLLDAYTEDADVEILSGVVYWYDGSWKNGNWHAGTWYGG
Ga0070749_103030533	3300006802	Aqueous	MKIEELENAPQWLLDAKTQDAYAEILSGVVWWYDGSWKNGNWHGGTWH
Ga0070749_106315251	3300006802	Aqueous	MKIEELENAPQWLLDADTNFADVEIIDGIVHWNGGVWKEGVWQNGVWKDGTWL
Ga0070754_104933921	3300006810	Aqueous	MTIKELEDAPQWLLDANTAFANVEIIDGIVHWNGGVWRDGIWHNGVWKDGIW
Ga0075476_100821154	3300006867	Aqueous	MTIKELEDAPQWLLDANTAFANVEIIDGIVHWNGGVWRDGIWHNGVWKDGIWANGVWKDG
Ga0075476_102052463	3300006867	Aqueous	MRIEELENPPQWLLDADTVDADVEIAGGIVHWYDGTWKDGAWQGGTWW
Ga0075481_102043431	3300006868	Aqueous	MTIEELDNAPQWLLDAETENADVEIIDGVVYWYDGIWKNGI
Ga0075477_104332252	3300006869	Aqueous	MKIKELANTPQWLLDAKTEDADVEIIDGIVHWYGG
Ga0075479_100867764	3300006870	Aqueous	MKIQDLKDAPQWLLDADTNFADVEIIDGIVHWNGGVWKEGVWQNGVWKDG
Ga0075475_103216043	3300006874	Aqueous	MKIEELANTPQWLLDAKTEDADVEIIDGIVHWYGGFWEYGVWQGGT
Ga0075475_104301131	3300006874	Aqueous	MKIEELENAPQWLLDANTYNANVDIIDGVVHWYDGSW
Ga0070750_1000501216	3300006916	Aqueous	MRIEELENPPQWLLDAYTEDADVEILSGVVYWYDGSWK
Ga0070750_100974703	3300006916	Aqueous	MKIEDLKNAPQWLLDADTANADVEIINGVVHWHDGEWHGGTWHDGVWHDGEW
Ga0070750_103355091	3300006916	Aqueous	MKIEELENPPQWLLDANTAFVNVEIIDGIVHWNGGVWRDGIWRNGVWKDG
Ga0070750_103561961	3300006916	Aqueous	MKIEELENPPQWLLDADTVFENVEIIDGIVHWNGGIWRDGIWHNGVWKDGI
Ga0070746_103834471	3300006919	Aqueous	MKIKELANTPQWLLDAKTEDADVEIIDGIVHWYGGFWEYGVWQGGTWYD
Ga0070746_104123362	3300006919	Aqueous	MKIEELENPPQWLLDANTAFVNVEIIDGIVHWNGGVWRDGIWHNGVWK
Ga0070746_104161791	3300006919	Aqueous	MKIKEIANAPQWLLDAKTEDADVEIIDGIVHWYGGFWEYGVWQGGTWYD
Ga0070746_104604723	3300006919	Aqueous	MTIKELENPPQWLLDANTAFVNVEIIDGIVHWNGGVWRDG
Ga0070745_11742503	3300007344	Aqueous	MTIKELEDAPQWLLDANTAFANVEIIDGIVHWNGGVWRDGIWHNGVWKD
Ga0070745_13326802	3300007344	Aqueous	MRIEELENAPQWLLDADTVDADVEIAGGIVHWYDG
Ga0070745_13565932	3300007344	Aqueous	MKIEELENPPQWLLDANTAFVNVEIIDGIVHWNGGVWRDGIWRNGVWK
Ga0070752_11503674	3300007345	Aqueous	MKIKELANAPQWLLDAKTKDADVEIIDGIVHWYGGFWEYGVWQGGTWYDGYWRNGIW
Ga0070752_11856901	3300007345	Aqueous	MTIKELEDAPQWLLDANTAFANVEIIDGIVHWNGGVWRDGIWHNGVWKDGIWANGVWKD
Ga0070753_13025542	3300007346	Aqueous	MKIKELENPPQWLLDAETQNADVAIIDGVVHWYDGIWEYG
Ga0070753_13589601	3300007346	Aqueous	MKIKELENPPQWLLDANTAFANVEIIDGIVHWNGGVWKEGVWQNGVWKDGTW
Ga0099851_11068744	3300007538	Aqueous	MKIEELENAPQWLLDAYTEDADVQILSGVVYWYDGSWK
Ga0099851_11594293	3300007538	Aqueous	MKIEELENPPQWLLDAYTEDADAEILSGVVWWYDGSWK
Ga0099849_11667303	3300007539	Aqueous	MKIEELDNAPQWLLDAYTEDADAEILSGVVWWYDGSWKNGNWHG
Ga0099848_11822411	3300007541	Aqueous	MKIEELEDAPQWLLDADTVDADVEIAGGIVHWYDGTWKDGAWQGGTWW
Ga0099846_13203462	3300007542	Aqueous	MRIEELENPPQWLLDAYTEDADVEILSGVVYWYDGSWKNGNWH
Ga0070751_12255202	3300007640	Aqueous	MKIEELENAPQWLLDAETEDANVEILSGVVYWYDGSWKNGNWHGGTWYGGIWRRGF
Ga0070751_13252411	3300007640	Aqueous	MKIKELENAPQWLLDAETQNADVAIIDGVVHWYDGIWEYGDW
Ga0099850_12858302	3300007960	Aqueous	MKIEELENAPQWLLDAYTEDADVQILSGVVYWYDGSWKNGNWHGGT
Ga0075480_105009721	3300008012	Aqueous	MRIEELENAPQWLLDAYTEDADVEILSGVVYWYDGSWKNGNWHAGTWYGGI
Ga0129342_12083063	3300010299	Freshwater To Marine Saline Gradient	MTIKELENPPQWLLDAYTEDADVQILSGVVYWYDGSWKNGNWHGGTWYGGIW
Ga0129342_13139381	3300010299	Freshwater To Marine Saline Gradient	MKIEELENAPAWLLDAKTHNADVEIINGVVHWRGGTWYDGTWCDGVWHSGT
Ga0180437_110455331	3300017963	Hypersaline Lake Sediment	MRIKELENAPQWLLDAKAEDANVEILSGVVYWYDGSWKNGNWHGGTWYGGIWLR
Ga0180437_112152072	3300017963	Hypersaline Lake Sediment	MKIEELENAPQWLLDAKTEDANVEILSGVVYWYDGSWKNGNWHG
Ga0180431_106460431	3300017987	Hypersaline Lake Sediment	MKIEELENAPQWLLDAETENADVEILSGVVWWYDGSWKN
Ga0180433_109182731	3300018080	Hypersaline Lake Sediment	MKIEELENAPQWLLDAKTEDADVEILSGVVYWYDGSWKNGNYHGGTWYGGIWRRG
Ga0212025_10729051	3300022057	Aqueous	MKIKELANTPQWLLDAKTEDADVEIIDGIVHWYGGFWEYGVWQGGTWYDGYWRNGIWRDG
Ga0196895_10293872	3300022067	Aqueous	MKIQDLKDAPQWLLDADTNFADVEIIDGIVHWNGGVWKEGVWQNGVWKDGI
Ga0212021_10672943	3300022068	Aqueous	MKIEELENAPQWLLDANTHNADVDIIDGVVHWYDGSW
Ga0212028_11064181	3300022071	Aqueous	MKIEELKDAPQWLLDADTNFADVEIIDGIVHWNGGVWKEV
Ga0196897_10183461	3300022158	Aqueous	MKIEELENPPQWLLDAKTEDADVEIIDGIVHWYDGVWRGDTWEGG
Ga0196897_10475632	3300022158	Aqueous	MRIEELENAPQWLLDADTVDADVEIAGGIVHWYDGTWKDGAWQGGTWWAG
Ga0212020_10787761	3300022167	Aqueous	MRIEELENPPQWLLDANTAFANVEIIDGIVHWNGGVWRDGIWHNGVWKD
Ga0212027_10158181	3300022168	Aqueous	MTIEDLANAPQWLLDAKTENADVEIIDGVVYWYNGIWKDGYWHRGYWS
Ga0212031_10808161	3300022176	Aqueous	MKIEELEDAPKWLLGADTVDADVDVVDGLVVWKDGI
Ga0196891_10307263	3300022183	Aqueous	MKIEELKDAPQWLLDADTNFADVEIIDGIVHWNGGVWKEGVWHNGVW
Ga0196899_10608804	3300022187	Aqueous	MKIEELENPPQWLLDANTAFVNVEIIDGIVHWNGGVWRDG
Ga0196905_10748661	3300022198	Aqueous	MTIKELENPPQWLLDAYTEDADVQILSGVVYWYDGSWKNGNWHGGTWYGG
Ga0196905_11561303	3300022198	Aqueous	MKIEELENAPRWLLDANTIFANVEIIDDIVHWYDGV
Ga0196901_10496094	3300022200	Aqueous	MRIEELENPPQWLLDAYTEDADVEILSGVVYWYDG
Ga0196901_10900963	3300022200	Aqueous	MKIEELENPPQWLLDAYTEDADAEILSGVVWWYDGSWKNGNWHG
Ga0208149_10838671	3300025610	Aqueous	MKIEELKDAPQWLLDADTNFADVEIIDGIVHWNGG
Ga0208149_11385262	3300025610	Aqueous	MTKQTEVTMSIEELENAPQWLLDAYTEDADVEILSGVVYWYDGSWKNGNWHAGT
Ga0208161_11549471	3300025646	Aqueous	MRIEELENAPQWLLDADTVDADVEIAGGIVHWYDGTWKDGAWQG
Ga0208160_10573084	3300025647	Aqueous	MRIEELENAPQWLLDAYTEDADVEILSGVVYWYDGSWKNGNWHAGTWYGGIWR
Ga0208160_11274231	3300025647	Aqueous	MKIEELENAPQWLLDAYTEDADVEILSGVVYWYDG
Ga0208428_11064533	3300025653	Aqueous	MKIKELENPPQWLLDANTAFANVEIIDGIVHWNGGVWRDGIWHNGVWKDG
Ga0208428_11661902	3300025653	Aqueous	MKIQDLKDAPQWLLDADTNFADVEIIDGIVHWNGGVWK
Ga0208898_11587391	3300025671	Aqueous	MKIKELANAPQWLLDAKTEDADVEIIDGIVHWYGGFWE
Ga0208019_10202006	3300025687	Aqueous	MKIEELENPPQWLLDAYTEDADAEILSGVVWWYDGSWKNGNWH
Ga0208019_11188621	3300025687	Aqueous	MKIEELEDAPQWLLDADTVDADVEIAGGIVHWYDGTWKDGAW
Ga0208150_11340551	3300025751	Aqueous	MKIEELENAPQWLLDANTYNANVDIIDGVVHWYDGSWFDGT
Ga0208899_10289261	3300025759	Aqueous	MKIEELENAPQWLLDAKTQDAYAEILSGVVWWYDGSWKNGNWHGGTW
Ga0208899_10353866	3300025759	Aqueous	MRIEELENPPQWLLDAYTEDADVEILSGVVYWYDGSWKN
Ga0208899_10644581	3300025759	Aqueous	MKIEELENAPQWLLDADTNFADVEIIDGIVHWNGGVWKEGVWQNGVWKDGT
Ga0208899_11326303	3300025759	Aqueous	MKIQDLKDAPQWLLDADTNFADVEIIDGIVHWNGGVWKEGVWQN
Ga0208899_11626803	3300025759	Aqueous	MKIKELENPPQWLLDANTAFANVEIIDGIVHWNGGVWRDGIWHNGVWKDGIWANGV
Ga0208767_10929624	3300025769	Aqueous	MKIEELENPPQWLLDANTAFVNVEIIDGIVHWNGGVW
Ga0208427_10648085	3300025771	Aqueous	MKIEELENAPQWLLDANTYNANVDIIDGVVHWYDGSWFDGTWHGGEWHYGVW
Ga0208427_10713284	3300025771	Aqueous	MKIEELENAPQWLLDADTNFADVEIIDGIVHWNGGVWK
Ga0208427_11999513	3300025771	Aqueous	MKIKELANTPQWLLDAKTEDADVEIIDGIVHWYGGFWEYGVWQG
Ga0208785_10862711	3300025815	Aqueous	MRIEELENPPQWLLDADTVDADVEIAGGIVHWYDGTWKDGAWQGGTWWAGT
Ga0208785_11260552	3300025815	Aqueous	MKIKELANAPQWLLDAKTEDADVEIIDGIVHWYGGFWEYG
Ga0208785_11441501	3300025815	Aqueous	MTISLTTKPNTTMKIEELENPPQWLLDANTHNADVDIIDGVVHWYDGVWR
Ga0208785_11528002	3300025815	Aqueous	MKIEELENAPAWLLDAKTHNADVEIINGVVHWRGGTWYDGTWC
Ga0208542_12007302	3300025818	Aqueous	MTKQTEVTMSIEELENAPQWLLDAETENADVEIIDGVVYWYDGIWKNGIWND
Ga0208917_10520731	3300025840	Aqueous	MKIEELENPPQWLLDANTAFVNVEIIDGIVHWNGGVWRDGIWRN
Ga0208645_10129251	3300025853	Aqueous	MKIKELENPPQWLLDANTAFANVEIIDGIVHCNGGVWRDGIWH
Ga0208645_10925192	3300025853	Aqueous	MKIEDLKNAPQWLLDADTKNADVDIINIGEVIWHSGEWHS
Ga0208645_11363693	3300025853	Aqueous	MKIEELENPPQWLLDANTAFVNVEIIDGIVHWNGGVWRDGIWRNGVWKDGI
Ga0208645_11867993	3300025853	Aqueous	MKIKELANTPQWLLDAKTEDADVEIIDGIVHWYGGFWEYGVWQGGTWYDG
Ga0208645_12415603	3300025853	Aqueous	MRIEELENAPQWLLDADTVDADVEIAGGIVHWYDGTWKDGAWQGGTWWAGT
Ga0208644_10829931	3300025889	Aqueous	MKIEELENPPQWLLDANTAFVNVEIIDGIVHWNGGVWR
Ga0209536_1015562552	3300027917	Marine Sediment	MKIEDLKNAPQWLLDADTANADVEIINGVVHWHDGVWYDGE
Ga0348335_095150_778_954	3300034374	Aqueous	MKIKELANAPQWLLDAKTKDADVEIIDGIVHWYGGFWEYGVWQGGTWYDGYWRNGIWHD
Ga0348335_119308_1_150	3300034374	Aqueous	MRIEELENPPQWLLDADTVDADVEIAGGIVHWYDGTWKDGAWQGGTWWAG
Ga0348335_168500_448_573	3300034374	Aqueous	MKIEELENPPQWLLDANTAFVNVEIIDGIVHWNGGVWRDGIW
Ga0348335_192048_395_505	3300034374	Aqueous	MRIEELENPPQWLLDANTAFVNVEIIDGIVHWNGGVW
Ga0348336_107187_1_153	3300034375	Aqueous	MKIKELANAPQWLLDAKTKDADVEIIDGIVHWYGGFWEYGVWQGGTWYDGY
Ga0348336_108958_2_169	3300034375	Aqueous	MKIQDLKDAPQWLLDADTNFADVEIIDGIVHWNGGVWKEGVWQNGVWKDGIWANGV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089548

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences