Metagenome / Metatranscriptome Family F089723

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089723
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	64 residues
Representative Sequence	MAALRTEEKDFSDEELEEIIDMKAPKEMIMEFESMVKESPLLMTGLAFAFGILIGVGLASGRRRSR
Number of Associated Samples	30
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.98 %
% of genes near scaffold ends (potentially truncated)	21.30 %
% of genes from short scaffolds (< 2000 bps)	68.52 %
Associated GOLD sequencing projects	30
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (75.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland (64.815 % of family members)
Environment Ontology (ENVO)	Unclassified (96.296 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (74.074 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.87% β-sheet: 0.00% Coil/Unstructured: 52.13%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00180	Iso_dh	36.11
PF07332	Phage_holin_3_6	9.26
PF00892	EamA	3.70
PF03144	GTP_EFTU_D2	1.85
PF03357	Snf7	0.93
PF07690	MFS_1	0.93
PF00899	ThiF	0.93
PF05016	ParE_toxin	0.93
PF06745	ATPase	0.93
PF13412	HTH_24	0.93
PF17147	PFOR_II	0.93
PF04138	GtrA	0.93
PF00005	ABC_tran	0.93
PF00528	BPD_transp_1	0.93
PF12367	PFO_beta_C	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG5491	Archaeal cell division protein CdvB, Snf7/Vps24/ESCRT-III family	Cell cycle control, cell division, chromosome partitioning [D]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
All Organisms	root	All Organisms	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
cellular organisms	root	All Organisms → cellular organisms	24.07 %
Viruses	superkingdom	All Organisms → Viruses	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	24.07 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	11.11 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
archaeon RBG_16_50_20	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	11.11 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300009519\|Ga0116108_1206844	Not Available	576	Open in IMG/M
3300014151\|Ga0181539_1000211	All Organisms → cellular organisms → Archaea	69847	Open in IMG/M
3300014152\|Ga0181533_1163723	Not Available	894	Open in IMG/M
3300014153\|Ga0181527_1156781	Not Available	989	Open in IMG/M
3300014158\|Ga0181521_10259656	Not Available	912	Open in IMG/M
3300017925\|Ga0187856_1000375	All Organisms → cellular organisms → Archaea	41688	Open in IMG/M
3300017929\|Ga0187849_1238731	Not Available	696	Open in IMG/M
3300017959\|Ga0187779_10128029	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	1551	Open in IMG/M
3300017959\|Ga0187779_11026864	Not Available	573	Open in IMG/M
3300017961\|Ga0187778_10017182	All Organisms → cellular organisms → Archaea	4445	Open in IMG/M
3300017961\|Ga0187778_10321173	Not Available	1004	Open in IMG/M
3300017961\|Ga0187778_10744712	Not Available	665	Open in IMG/M
3300017961\|Ga0187778_11025378	Not Available	572	Open in IMG/M
3300017972\|Ga0187781_10015292	All Organisms → cellular organisms → Archaea	5414	Open in IMG/M
3300017972\|Ga0187781_10068795	Not Available	2438	Open in IMG/M
3300017972\|Ga0187781_10199835	Not Available	1410	Open in IMG/M
3300017972\|Ga0187781_10296275	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	1148	Open in IMG/M
3300017972\|Ga0187781_10558332	Not Available	824	Open in IMG/M
3300017972\|Ga0187781_10670863	Not Available	749	Open in IMG/M
3300017973\|Ga0187780_10256531	Not Available	1225	Open in IMG/M
3300017973\|Ga0187780_10598281	Not Available	792	Open in IMG/M
3300017973\|Ga0187780_10630246	Not Available	771	Open in IMG/M
3300017973\|Ga0187780_10688402	Not Available	737	Open in IMG/M
3300017973\|Ga0187780_11349202	Not Available	525	Open in IMG/M
3300017973\|Ga0187780_11453729	Not Available	506	Open in IMG/M
3300017974\|Ga0187777_10023352	All Organisms → cellular organisms → Archaea	3937	Open in IMG/M
3300017974\|Ga0187777_11287285	Not Available	537	Open in IMG/M
3300017975\|Ga0187782_10018343	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	5094	Open in IMG/M
3300017975\|Ga0187782_10019865	All Organisms → cellular organisms → Archaea	4892	Open in IMG/M
3300017975\|Ga0187782_10485410	Not Available	944	Open in IMG/M
3300017975\|Ga0187782_10544666	Not Available	889	Open in IMG/M
3300018062\|Ga0187784_10012182	Not Available	6936	Open in IMG/M
3300018062\|Ga0187784_10119168	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	2153	Open in IMG/M
3300018062\|Ga0187784_10213669	Not Available	1573	Open in IMG/M
3300018062\|Ga0187784_10698656	Not Available	812	Open in IMG/M
3300018062\|Ga0187784_10767258	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	770	Open in IMG/M
3300018062\|Ga0187784_11075260	Not Available	639	Open in IMG/M
3300018085\|Ga0187772_10119040	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	1720	Open in IMG/M
3300018085\|Ga0187772_10174684	Not Available	1433	Open in IMG/M
3300018085\|Ga0187772_10231871	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	1249	Open in IMG/M
3300018085\|Ga0187772_10453650	Not Available	899	Open in IMG/M
3300018086\|Ga0187769_10002670	All Organisms → cellular organisms → Archaea	10497	Open in IMG/M
3300018086\|Ga0187769_10027408	Not Available	3839	Open in IMG/M
3300018086\|Ga0187769_10037465	Not Available	3323	Open in IMG/M
3300018086\|Ga0187769_10058750	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	2688	Open in IMG/M
3300018086\|Ga0187769_10081845	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	2294	Open in IMG/M
3300018086\|Ga0187769_10134640	All Organisms → Viruses → Predicted Viral	1800	Open in IMG/M
3300018086\|Ga0187769_10137847	Not Available	1779	Open in IMG/M
3300018086\|Ga0187769_10209021	Not Available	1446	Open in IMG/M
3300018086\|Ga0187769_10221883	Not Available	1402	Open in IMG/M
3300018086\|Ga0187769_10268974	Not Available	1270	Open in IMG/M
3300018086\|Ga0187769_10394445	Not Available	1040	Open in IMG/M
3300018086\|Ga0187769_10781229	Not Available	722	Open in IMG/M
3300018086\|Ga0187769_10983262	Not Available	639	Open in IMG/M
3300018086\|Ga0187769_11047283	Not Available	617	Open in IMG/M
3300018086\|Ga0187769_11544062	Not Available	502	Open in IMG/M
3300018088\|Ga0187771_10021485	Not Available	4815	Open in IMG/M
3300018088\|Ga0187771_10029879	Not Available	4138	Open in IMG/M
3300018088\|Ga0187771_10142032	Not Available	1967	Open in IMG/M
3300018088\|Ga0187771_10273014	Not Available	1413	Open in IMG/M
3300018088\|Ga0187771_10344854	Not Available	1252	Open in IMG/M
3300018088\|Ga0187771_10626742	Not Available	912	Open in IMG/M
3300018088\|Ga0187771_11670161	Not Available	541	Open in IMG/M
3300018088\|Ga0187771_11864004	Not Available	511	Open in IMG/M
3300018090\|Ga0187770_10042706	All Organisms → cellular organisms → Archaea	3234	Open in IMG/M
3300018090\|Ga0187770_10090968	Not Available	2264	Open in IMG/M
3300018090\|Ga0187770_10168741	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	1674	Open in IMG/M
3300018090\|Ga0187770_10260447	Not Available	1345	Open in IMG/M
3300018090\|Ga0187770_10354584	Not Available	1147	Open in IMG/M
3300018090\|Ga0187770_10517727	Not Available	944	Open in IMG/M
3300018090\|Ga0187770_11456092	Not Available	557	Open in IMG/M
3300018090\|Ga0187770_11650035	Not Available	523	Open in IMG/M
3300018090\|Ga0187770_11770990	Not Available	505	Open in IMG/M
3300019264\|Ga0187796_1569450	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	1206	Open in IMG/M
3300019275\|Ga0187798_1239065	Not Available	694	Open in IMG/M
3300019275\|Ga0187798_1498492	Not Available	512	Open in IMG/M
3300019275\|Ga0187798_1647744	Not Available	637	Open in IMG/M
3300019278\|Ga0187800_1506725	Not Available	752	Open in IMG/M
3300019284\|Ga0187797_1254173	Not Available	576	Open in IMG/M
3300019284\|Ga0187797_1271534	Not Available	684	Open in IMG/M
3300019284\|Ga0187797_1669817	Not Available	675	Open in IMG/M
3300019284\|Ga0187797_1849712	Not Available	552	Open in IMG/M
3300027854\|Ga0209517_10499655	Not Available	663	Open in IMG/M
3300031862\|Ga0315280_10003612	All Organisms → cellular organisms → Archaea	23606	Open in IMG/M
3300032805\|Ga0335078_12107408	Not Available	599	Open in IMG/M
3300032892\|Ga0335081_11028609	Not Available	957	Open in IMG/M
3300032892\|Ga0335081_12610930	Not Available	518	Open in IMG/M
3300033402\|Ga0326728_10004336	All Organisms → cellular organisms → Archaea	42170	Open in IMG/M
3300033402\|Ga0326728_10004886	All Organisms → cellular organisms → Archaea	38855	Open in IMG/M
3300033402\|Ga0326728_10056980	Not Available	5523	Open in IMG/M
3300033402\|Ga0326728_10708638	Not Available	754	Open in IMG/M
3300033405\|Ga0326727_10353010	Not Available	1392	Open in IMG/M
3300033405\|Ga0326727_10488220	Not Available	1078	Open in IMG/M
3300033977\|Ga0314861_0004815	All Organisms → cellular organisms → Archaea	11604	Open in IMG/M
3300033977\|Ga0314861_0008224	All Organisms → cellular organisms → Archaea	7891	Open in IMG/M
3300033977\|Ga0314861_0032179	Not Available	3112	Open in IMG/M
3300033977\|Ga0314861_0051306	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	2290	Open in IMG/M
3300033977\|Ga0314861_0056384	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20	2152	Open in IMG/M
3300033977\|Ga0314861_0107446	Not Available	1415	Open in IMG/M
3300033977\|Ga0314861_0208215	Not Available	921	Open in IMG/M
3300033977\|Ga0314861_0297453	Not Available	729	Open in IMG/M
3300033977\|Ga0314861_0399244	Not Available	602	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.59%
Aquatic	Environmental → Aquatic	7.41%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.11%
Freshwater	Environmental → Aquatic → Freshwater	7.41%
Peat	Environmental → Terrestrial → Peat	6.48%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	85.19%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.48%
Lake	Environmental → Aquatic → Freshwater → Lake	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	85.19%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.48%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.56%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	64.81%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	17.59%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	6.48%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.70%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.78%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.93%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.93%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019264	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019275	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019278	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300031862	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033977	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0116108_12068441	3300009519	Peatland	MASTETEEKEYSDEELEEIMDMKAPTQFVKEFEAIVKERPLLVTGLVFAFGILIGASLSSGRRRR*
Ga0181539_100021149	3300014151	Bog	MASTETEEKEFSDEELEEIIDMKAPTQFVKEFEAIVKERPLLVTGLVFAFGILIGASLSSGRRRR*
Ga0181533_11637232	3300014152	Bog	MATAKIEENNFSDEDLEEIMDMQAPKALIKEFEATVKERPLLVTGLVFAFGLLLGASLCNRRKSK*
Ga0181527_11567811	3300014153	Bog	MSSTETEETEFSDEELEEIIDMKAPTQFVKEFEAIVKERPILVTGLVFAFGILIGISLSPRRRRR*
Ga0181521_102596562	3300014158	Bog	MASTETEEKEFSDEELEEIIDMRAPTQFVKEFEAIVKERPLLVTGLVFAFGILIGASLSSGRRRR*
Ga0187856_100037524	3300017925	Peatland	MASTETEEKEYSDEELEEIMDMKAPTQFVKEFEAIVKERPLLVTGLVFAFGILIGASLSSGRRRR
Ga0187849_12387311	3300017929	Peatland	DEELEEIIDMKAPTELVKEFEAIVKESPLLVTGLVFAFGILLGVSLSSGRRRR
Ga0187779_101280291	3300017959	Tropical Peatland	MTELIHMAAAETEEKEFSDEELEEIIDMKPPTHLVKEFEAIVKERPLLVTGLVFAFGILVGISLSPRRRRR
Ga0187779_110268641	3300017959	Tropical Peatland	MATLSSEDNEFSDEELEEIIDMKAPREMIMEFESLVKESPLVMTGLAFAFGILVGIGLASGHRRSR
Ga0187778_100171825	3300017961	Tropical Peatland	MATLSTEEKDFSDDELEEIIDMKAPKELVDEFQSLVKDSPLLMTGLAFAFGVLIGVGLASGRRRSR
Ga0187778_103211732	3300017961	Tropical Peatland	METLEEREFSDEELEQIIDMKAPKELLKEFEALVKEKPLLVTGLVFAFGILVGVGLSSGRRRSR
Ga0187778_107447123	3300017961	Tropical Peatland	SDEELEEIIDMKAPREMIMELESMVKESPLLMTGLAFGFGILIGVGLASGRRRSR
Ga0187778_110253782	3300017961	Tropical Peatland	MASTVTEEKEFSDEELEEIIDMKAPTHLVKEFEAILKERPLLVTGLVFAFGILIGVSLSPRRRRR
Ga0187781_100152922	3300017972	Tropical Peatland	MAALSTEEKEFTDEELEEIIDMKPPRELIRDFESLVKEKPLVMTGLAFAFGILIGLGLASGRRRSR
Ga0187781_100687953	3300017972	Tropical Peatland	MAVLKNEDKGFSDEELEEIIDMKAPKELILEFEAMVKESPLLMTGLAFAFGLLIGVGLASGRRRSR
Ga0187781_101998352	3300017972	Tropical Peatland	MSSTETEDTEFSDEELEEIIDMKAPTQLVKEFEAVVKERPLLVTGLVFAFGILLGISLSPRRRRR
Ga0187781_102962754	3300017972	Tropical Peatland	LVTRMATLETEEKEFSDEELEEIIDMKAPKELVKQFESLVKERPLLVTGLVFAFGLLLGSGLSHRRRSR
Ga0187781_105583323	3300017972	Tropical Peatland	MAAQRTEEEYSDEELEEIIDMKAPTELVKEFESMIKESPLLMIGLAFTFGVLVGAGLASGRRRSH
Ga0187781_106708631	3300017972	Tropical Peatland	VEALSSEDKEFSDEELEEIIDMQAPRELIMEFESLVKESPLVMTGLAFAFGILVGVGLASGRRRSR
Ga0187780_102565312	3300017973	Tropical Peatland	MATLSTEEKDFSDDELEEIIDMKAPKELVDEFQSLVKESPLLMTGLAFAFGVLVGVGLASGRRRSR
Ga0187780_105982813	3300017973	Tropical Peatland	KCIFGGTQIGSEMIPMATLETEEKEFSDEELEEIIDMKAPKELMKEFEAMVKERPLLMSGLVFAFGILVGVGLSSRRRRSR
Ga0187780_106302462	3300017973	Tropical Peatland	MASTITEEKEFSDEELEEIIDMKAPPHLVKEFEAIVKERPLLVTGLVFAFGILIGVSLSPRRRRR
Ga0187780_106884021	3300017973	Tropical Peatland	METLEEKEYSDEELEEIIDMKAPKELIREFEALVKEKPLLVTGLVFAFGVLVGVGLSGRRRSR
Ga0187780_113492021	3300017973	Tropical Peatland	METLEEKEYSDEELEEIIDMKAPKELIREFESLVKEKPLLVTGLVFAFGVLVGVGLSGRRRSR
Ga0187780_114537291	3300017973	Tropical Peatland	METLEEREFSDEELEQIIDMKAPKELLKEFEALVKEKPLLVTGLVFAF
Ga0187777_100233526	3300017974	Tropical Peatland	LIHMAAAETEEKEFSDEELEEIIDMKPPTHLVKEFEAIVKERPLLVTGLVFAFGILVGISLSPRRRRR
Ga0187777_101078044	3300017974	Tropical Peatland	IDMKAPREMIMEFESLVKESPLVMTGLAFAFGILVGIGLASGHRRSR
Ga0187777_112872851	3300017974	Tropical Peatland	TEEKDFSDDELEEIIDMKAPKELVDEFQSLVKDSPLLMTGLAFAFGVLVGVGLASGRRRS
Ga0187782_100183436	3300017975	Tropical Peatland	MAVLKNEDKGFSDEELEEIIDMKAPKELILEFEAMVKESPLLMTGLAFAFGLLIGVGL
Ga0187782_100198651	3300017975	Tropical Peatland	MSALRTEEKEFTDEELEEIIDMKPPRELIRDFESLVKEKPLVMTGLAFAFGILIGLGLASGRRRSR
Ga0187782_104854103	3300017975	Tropical Peatland	MAVLKNEDKEFSDEELEEIIDMKAPKELILEFEAMVKESPLLMTGLAFAFGLLIGVGLASGRRRSR
Ga0187782_105446661	3300017975	Tropical Peatland	MATLETEEKEFSDEELEEIIDMKAPKELVKQFESMVRERPLLVTGLVFAFGLLLGSGLSHRRRSR
Ga0187766_104664564	3300018058	Tropical Peatland	KAPTHLVKEFEAILKERPLLVTGLVFAFGILIGVSLSPRRRRR
Ga0187784_100121826	3300018062	Tropical Peatland	MATVRAEEKEFSDEELEEIIDMKAPKEMIMELESMVKESPLLMTGLAFGFGILIGVGLASGRRRSR
Ga0187784_101191685	3300018062	Tropical Peatland	LAALRTQEKEFSDEELEEIIDMKAPKEPIKEFESLVRERPLVMAGLAFAFGILIGVGLASRRRRSR
Ga0187784_102136692	3300018062	Tropical Peatland	MAVLKNEDNEFSDEELEEIIDMKAPTELKMEFEAMVKESPLLMTGLAFAFGLLIGVGLASRRRRSR
Ga0187784_106986561	3300018062	Tropical Peatland	MAVVTEEKEFSDDELEEIIDMKAPKELINEFEAMVKESPLVMTGLAFAFGILVGIGLTSGRRRSR
Ga0187784_107672581	3300018062	Tropical Peatland	ASVARMATLETEEKEFSDEELEEIIDMKAPKELVKQFESMVRERPLLVTGLVFAFGLLLGSGLSHRRRSR
Ga0187784_108889481	3300018062	Tropical Peatland	LAALRTEEKEFSDEELEEIIDMKAPKEPVKEFESLVRERPLVMTGLAFA
Ga0187784_110752602	3300018062	Tropical Peatland	MPSTETEDTEFSDEELEEIIDMKAPTQLVKEFEAVVKERPLLVTGLVFAFGILLGISLSPRRRRR
Ga0187772_101190405	3300018085	Tropical Peatland	LINMSSTETEDTEFSDEELEEIIDMKAPTQLVKEFEAVVKERPLLVTGLVFAFGILLGISLSPRRRRR
Ga0187772_101746842	3300018085	Tropical Peatland	MATVRTEEKEFSDEELEEIIDMKAPKEMIMELESMVKESPLLMTGLAFGFGILIGVGLASGRRRSR
Ga0187772_102318714	3300018085	Tropical Peatland	TLSTEEKDFSDDELEEIIDMKAPKELVDEFQSLVKESPLLMTGLALAFGVLVGVGLASGRRRSR
Ga0187772_104536502	3300018085	Tropical Peatland	MRLMSTTETQEDDFSDEELEEIIDMQAPQALFKEFEAIVKERPLLVSGLIFAFDLLL
Ga0187772_110341811	3300018085	Tropical Peatland	IDMKAPRELISEFESLVKESPLLMTGLAFAFGVLIGVGLASGRKRSR
Ga0187769_100026705	3300018086	Tropical Peatland	MASIETEEKEYSDEELEEIIDMKAPKQLAKEFESMVKERPLLVTGLVFAFGILVGTALSRRRRSR
Ga0187769_100274084	3300018086	Tropical Peatland	LIHMETAETEEKEFSDEELEEIIDMKAPTQFVKEFEAIVKERPLLVTGLVFAFGILIGVSLAPKRRRR
Ga0187769_100374653	3300018086	Tropical Peatland	MATVTTEEKGFSDDDLEEIIDMKAPRELISEFESLVKESPLLMTGLAFAFGVLIGVGLASGRKRSR
Ga0187769_100587502	3300018086	Tropical Peatland	MATVRAEEKEFSDEELEEIIDMKAPREMIMELESMVKESPLLMTGLAFGFGILIGVGLASGRRRSR
Ga0187769_100818455	3300018086	Tropical Peatland	MVAMATLEPEEKEFTDEELEEIIDMQAPKELVKQFESMVKERPLLVTGLVFAFGLLLGVGLSGRRRRSR
Ga0187769_101346402	3300018086	Tropical Peatland	MATTETEEKEFSDEELEQIIDMKAPNELAKQLEAMIKERPLLMGGLIFAFGILLGVGLSSGRRRRSR
Ga0187769_101378471	3300018086	Tropical Peatland	MAALRTEEKDFSDEELEEIIDMKAPKEMIMEFESMVKESPLLMTGLAFAFGILIGVGLASGRRRSR
Ga0187769_102090213	3300018086	Tropical Peatland	MATLETEEKEFSDEELEEIIDMQAPKELVKQFESMVKERPLLVSGLIFAFGLLLGAGLSRRRRSR
Ga0187769_102218833	3300018086	Tropical Peatland	MAALSTEEKEFSDEELEEIIDMKAPKELMREFESLARESPLLMTGLAFAFGVIIGLGLASGRRRSR
Ga0187769_102689741	3300018086	Tropical Peatland	MRLMSTTETQEDDFSDEELEEIIDMQAPQALFKEFEAIVKERPLLVSGLIFAFGLLLGASLSHRRRPR
Ga0187769_103944452	3300018086	Tropical Peatland	MAGGRAEEKGFSDEELEEIIDMKAPKELILEFESLVKENPLLMTGLVFAFGILVGVGMASGRRRSR
Ga0187769_107812292	3300018086	Tropical Peatland	MAALSTEEKEFSDEELEEIIDMQAPKELIREFESLVRESPLVMTGLAFAFGILIGVGLASSRRRSR
Ga0187769_109832621	3300018086	Tropical Peatland	TEEKDFSDDELEEIIDMKAPKELVDEFQSLVKESPLLMTGLAFAFGVLVGVGLASGRRRS
Ga0187769_110472832	3300018086	Tropical Peatland	MPMSALRTEEKDFTDEELEEIIDMKPPRELIRDFESLVKEKPLVMTGLAFAFGILIGLGLASGRRRSR
Ga0187769_115440621	3300018086	Tropical Peatland	MAVLDNEDKEFSDEELEEIIDMKAPKELIMEFEAMVKESPLLMTGLAFAFGLLIGVGLASGRRRSR
Ga0187771_100214854	3300018088	Tropical Peatland	MAALSTEEKEFSDEELEEIIDMQAPKEMIREFESLVRESPLVMTGLAFAFGILIGVGLASSRKRSR
Ga0187771_100298794	3300018088	Tropical Peatland	MATIQTQEDEFSDEELEEIIDMKAPKELVKEFETLVKESPLLVSGLVFAFGILVGVGLSNRRRRSR
Ga0187771_101420322	3300018088	Tropical Peatland	MSALGTEEKGFTDEELEEIIDMKPPRELIRDFEFLVKEKPLVMTGLAFAFGILIGLGLASGRRRSR
Ga0187771_102730142	3300018088	Tropical Peatland	METLEDREFSDEDLEQIIDMKAPKELLKEFEALVKEKPLLVTGLVFAFGILVGVGLSSGR
Ga0187771_103448542	3300018088	Tropical Peatland	MARLETQEKEYSDEELEEIIDMKAPKQLAKEFESMVKERPLLVTGLVFAFGILVGAALSRRRRSR
Ga0187771_106267422	3300018088	Tropical Peatland	MASVETEEKEYSDEELEEIIDMKAPKQLAKEFESMVKERPLLVTGLVFAFGILVGAGLSRRRRSR
Ga0187771_116701612	3300018088	Tropical Peatland	DEELEEIIDMKAPKEMIMEFESMVKESPLLMTGLAFAFGILIGVGLASGRRRSR
Ga0187771_118640042	3300018088	Tropical Peatland	SEDKEFSDEELEEIIDMKAPTELIMEFESLVKESPLLMTGLAFAFGILVGVGLTSGRRRS
Ga0187770_100427066	3300018090	Tropical Peatland	MDGRTKIHICLNPVHTSVTRMATLETEEKEFSDEELEEIIDMQAPKELVKQFESMVKERPLLVSGLIFAFGLLLGAGLSRRRRSR
Ga0187770_100909682	3300018090	Tropical Peatland	MSTLSTEEKDFSDDELEEIIDMKAPKELVDEFQSLVKESPLLMTGLAFAFGVLVGVGLASGRRRSR
Ga0187770_101687411	3300018090	Tropical Peatland	MPMSALRTEEKEFTDEELEEIIDMKPPRELIRDFESLVKEKPLVMTGLAFAFGILIGLGLASGRRRSR
Ga0187770_102604473	3300018090	Tropical Peatland	MAALQTQEDEFSDEELEEIIDMKAPKELVKEFETLLKESPLLVTGLVFAFGILVGVGLTSRRRRPR
Ga0187770_103545842	3300018090	Tropical Peatland	METLEDREFSDEDLEQIIDMKAPKELLKEFEALVKEKPLLVTGLVFAFGILVGVGLSSGRRRSR
Ga0187770_105177272	3300018090	Tropical Peatland	MATSETEEKEFSDEELEQIIDMKAPNELAKQLEAMIKERPLLMGGLIFAFGILLGVGLSSGRRRRSR
Ga0187770_114560922	3300018090	Tropical Peatland	MASAETEEKEFSDEELEEIIDMKAPTKLVKEFEAIVKERPLLVTGLVFAFGILIGVSLSSGRRRR
Ga0187770_116500351	3300018090	Tropical Peatland	MAGGRTEEKGFSDEELEEIIDMKAPRELILEFESLVKENPLLMTGLVFAFGILVGVGLASGRRRSR
Ga0187770_117709901	3300018090	Tropical Peatland	MSSTETEDTDFSDEELEEIIDMKAPTQLVKEFEAVVKERPLLVTGLVFAFGILLGISLSPRRRRR
Ga0187796_15694501	3300019264	Peatland	ATLSSEDNEFSDEELEEIIDMKAPREMIMEFESLVKESPLVMTGLAFAFGILVGIGLASGHRRSR
Ga0187798_12390651	3300019275	Peatland	TVRTEDKEFSDEELEEIIDMKAPKEMIMELESMVKESPLLMTGLAFGFGILIGVGLASGRRRSR
Ga0187798_14984922	3300019275	Peatland	MPMATLSTEEKDFSDDELEEIIDMKAPKELVDEFQSLVKESPLLMTGLAFAFGVLIGVGLASGRRRSR
Ga0187798_16477443	3300019275	Peatland	LSTEEKEFSDEELEEIIDMQAPKEMIREFESLVRESPLVMTGLAFAFGILIGVGLASSRKRSR
Ga0187800_15067253	3300019278	Peatland	RFVITRASMATLSSEDNEFSDEELEEIIDMKAPREMIMEFESLVKESPLVMTGLAFAFGILVGIGLASGHRRSR
Ga0187797_12541733	3300019284	Peatland	KNEDKGFSDEELEEIIDMKAPKELILEFEAMVKESPLLMTGLAFAFGLLIGVGLASGRRRSR
Ga0187797_12715341	3300019284	Peatland	EEKEFSDEELEEIIDMKAPKEMIMELESMVKESPLLMTGLAFGFGILIGVGLASGRRRSR
Ga0187797_16698171	3300019284	Peatland	MATLETEEKEFSDEELEEIIDMKAPKELVKQFESMVKERPLLVSGLIFAFGLLLGAGLSRRRRSR
Ga0187797_18497121	3300019284	Peatland	RLMATAETQEDDFSDEELEEIIDMQAPQALFKEFEAIVKERPLLVSGLIFAFGLLLGASLSHRRRPR
Ga0209517_104996551	3300027854	Peatlands Soil	MATTEKEENNFSDEDLEEIIDMQAPQALMKEFEAMVKERPLLVSGLIFAFGLLLGASLSGRRRSR
Ga0315280_1000361212	3300031862	Sediment	MTTPRRKESEFSDEELEEIMDMQAPKELAKELEAMIRDSPLLVTGLVFAFGLLIGVSLSSSHRRSR
Ga0335078_121074081	3300032805	Soil	MATLTTDEKEFSDDELEEIIDMKAPKELIDEFQSLVKEKPLIMTGLAFAFGILIGVG
Ga0335081_110286092	3300032892	Soil	MATLTTDEKEFSDDELEEIIDMKAPKELIDEFQSLVKEKPLIMTGLAFAFGILIGVGLASGRRRSR
Ga0335081_126109302	3300032892	Soil	MATVTTEEKEFSDDDLEQIIDMKAPKELVDEFESLVKESPLIMTGLAFAFGLLIGVGLASSRRRSR
Ga0326728_1000433639	3300033402	Peat Soil	MAALRNEEKEFSDEELEEIIDMKAPKELIREFEYLVKEKPLVMTGLAFAFGILIGIGLTSGRRRSR
Ga0326728_1000488624	3300033402	Peat Soil	MASAETEEKEFSDEELEEIIDMKPPTRLVKEFEAIVKERPLLVTGLVFAFGILIGVSLSSGRRRR
Ga0326728_100569806	3300033402	Peat Soil	MSSAETDEKEFSDEELEEIIDMKAPTGLIREFEAALKERPLLVTGLVFAFGILIGASLSSGRRRH
Ga0326728_107086381	3300033402	Peat Soil	MATAKIEENNFSDEDLEEIMDMQAPKALIKEFEATVKERPLLVTGLVFAFGLLLGASLCSHRKSK
Ga0326727_103530102	3300033405	Peat Soil	MASTETEEKEFSDEELEEIIDMKAPTQFVKEFEAIVKERPLLVTGLVFAFGILIGASLSSGRRRR
Ga0326727_104882202	3300033405	Peat Soil	MSSTETEETEFSDEELEEIIDMKAPTQLVKEFEAIVKERPLLVSGLVFAFGILIGISLSPRRRRR
Ga0326727_109919843	3300033405	Peat Soil	EEIIDMKAPTQFVKEFEAIVKERPLLVTGLVFAFGILIGISLSPRRRRR
Ga0314861_0004815_5689_5889	3300033977	Peatland	MAASEAEEKEFTDDELEEIIDMKAPKQLIKEFESLVRERPLLVTGLVFAFGILLGANLSSRRRHSR
Ga0314861_0008224_6445_6645	3300033977	Peatland	MAAQRTKEKEFSDEELEEIIDMKAPKELIREFESLVKESPMVMTGLAFAFGILIGIGLASGRRRSR
Ga0314861_0032179_430_630	3300033977	Peatland	MATSEVEEKEFSDEELEEIIDMKAPKQLVREFESMVRERPLLVTGLVFAFGILVGAGLSSGRRRSR
Ga0314861_0051306_1110_1310	3300033977	Peatland	MAATETEEKGFSDEELEEIIDMKAPKKLIKEFESAVRDRPLLVTGLVFAFGILVGAGLSSGRRRSR
Ga0314861_0056384_895_1092	3300033977	Peatland	MASAETEEKEFSDEELEQIIDMKAPTKLVKEFEAIVKERPLLVTGLVFAFGILIGVSLSSGRRRR
Ga0314861_0107446_1069_1269	3300033977	Peatland	MATSETEEKEFTDEELEEIIDMKAPKHLIKEYESLVREKPLLVTGLVFAFGILVGAGLSSRRRRSR
Ga0314861_0208215_668_868	3300033977	Peatland	MATSETEEKEFTDEELEEIIDMKARKELIKEFESLVRDRPLLVTGLIFAFGILVGAALSSRRRRSH
Ga0314861_0297453_548_727	3300033977	Peatland	MATLETEEKEFSDEELEEIIDMKAPKELVKQFESMVKERPLLVTGLVFAFGLLLGAGLSH
Ga0314861_0399244_120_323	3300033977	Peatland	MATTETEEKDFTDEELEEIIDMKAPKKLIKEFESAVRDRPLLVSGLVFAFGILVGVGLSSGRRRYRR
Ga0314861_0534375_347_499	3300033977	Peatland	EEIIDMKAPRELIKQFESLVKESPLLMTGLAFALGILIGVGLSSGRRRSR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089723

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences