NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F090138

Metagenome / Metatranscriptome Family F090138

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090138
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 49 residues
Representative Sequence VKASPIHVGDFVYCRSKYYRDQLQLPEELGLVIEIKRSNFKILY
Number of Associated Samples 81
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 6.54 %
% of genes near scaffold ends (potentially truncated) 98.15 %
% of genes from short scaffolds (< 2000 bps) 98.15 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (99.074 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil
(22.222 % of family members)
Environment Ontology (ENVO) Unclassified
(38.889 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(68.519 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 12.50%    β-sheet: 18.06%    Coil/Unstructured: 69.44%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF00899ThiF 81.48
PF05237Obsolete Pfam Family 13.89
PF04028DUF374 2.78
PF01025GrpE 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG2121Uncharacterized conserved protein, lysophospholipid acyltransferase (LPLAT) superfamilyFunction unknown [S] 2.78
COG0576Molecular chaperone GrpE (heat shock protein HSP-70)Posttranslational modification, protein turnover, chaperones [O] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms99.07 %
UnclassifiedrootN/A0.93 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000789|JGI1027J11758_13001533All Organisms → cellular organisms → Bacteria1134Open in IMG/M
3300000789|JGI1027J11758_13029692All Organisms → cellular organisms → Bacteria1128Open in IMG/M
3300004803|Ga0058862_12212333All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300005166|Ga0066674_10337017All Organisms → cellular organisms → Bacteria708Open in IMG/M
3300005172|Ga0066683_10695587All Organisms → cellular organisms → Bacteria603Open in IMG/M
3300005172|Ga0066683_10774459All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300005536|Ga0070697_100638138All Organisms → cellular organisms → Bacteria937Open in IMG/M
3300005540|Ga0066697_10304596All Organisms → cellular organisms → Bacteria936Open in IMG/M
3300005540|Ga0066697_10614895All Organisms → cellular organisms → Bacteria601Open in IMG/M
3300005552|Ga0066701_10661633All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300005557|Ga0066704_10281850All Organisms → cellular organisms → Bacteria1126Open in IMG/M
3300005764|Ga0066903_102205050All Organisms → cellular organisms → Bacteria1062Open in IMG/M
3300005764|Ga0066903_104668727All Organisms → cellular organisms → Bacteria729Open in IMG/M
3300005764|Ga0066903_107342085All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300005764|Ga0066903_107737255All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300006034|Ga0066656_10815861All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300006046|Ga0066652_101364287All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300006796|Ga0066665_11451053All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300006845|Ga0075421_102419982All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300006847|Ga0075431_101102913All Organisms → cellular organisms → Bacteria758Open in IMG/M
3300006853|Ga0075420_100316071All Organisms → cellular organisms → Bacteria1353Open in IMG/M
3300006854|Ga0075425_100221343All Organisms → cellular organisms → Bacteria2177Open in IMG/M
3300006904|Ga0075424_100628294All Organisms → cellular organisms → Bacteria1147Open in IMG/M
3300009147|Ga0114129_10510361All Organisms → cellular organisms → Bacteria1569Open in IMG/M
3300009147|Ga0114129_10671084All Organisms → cellular organisms → Bacteria1335Open in IMG/M
3300009147|Ga0114129_12993359All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300009156|Ga0111538_10946701All Organisms → cellular organisms → Bacteria1090Open in IMG/M
3300009156|Ga0111538_11992693All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300009162|Ga0075423_10645662All Organisms → cellular organisms → Bacteria1116Open in IMG/M
3300009233|Ga0103856_10105436All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300009239|Ga0103858_10076277All Organisms → cellular organisms → Bacteria817Open in IMG/M
3300009609|Ga0105347_1208833All Organisms → cellular organisms → Bacteria788Open in IMG/M
3300010087|Ga0127492_1053679All Organisms → cellular organisms → Bacteria601Open in IMG/M
3300010115|Ga0127495_1123083All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300010119|Ga0127452_1072678All Organisms → cellular organisms → Bacteria826Open in IMG/M
3300010130|Ga0127493_1112995All Organisms → cellular organisms → Bacteria1395Open in IMG/M
3300010130|Ga0127493_1172458All Organisms → cellular organisms → Bacteria564Open in IMG/M
3300010141|Ga0127499_1135084All Organisms → cellular organisms → Bacteria1032Open in IMG/M
3300010358|Ga0126370_11088680All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300010358|Ga0126370_12564625All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300010360|Ga0126372_12329091All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300010360|Ga0126372_13233786All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300010361|Ga0126378_11292189All Organisms → cellular organisms → Bacteria825Open in IMG/M
3300010366|Ga0126379_11745311All Organisms → cellular organisms → Bacteria727Open in IMG/M
3300010366|Ga0126379_12612042All Organisms → cellular organisms → Bacteria603Open in IMG/M
3300010376|Ga0126381_102584171All Organisms → cellular organisms → Bacteria727Open in IMG/M
3300010398|Ga0126383_10183706All Organisms → cellular organisms → Bacteria → Proteobacteria1990Open in IMG/M
3300010398|Ga0126383_13356350All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300010400|Ga0134122_12198548All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300010401|Ga0134121_10693664All Organisms → cellular organisms → Bacteria965Open in IMG/M
3300010905|Ga0138112_1153017All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300011120|Ga0150983_10048660All Organisms → cellular organisms → Bacteria588Open in IMG/M
3300011120|Ga0150983_12480820All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300011120|Ga0150983_14040033All Organisms → cellular organisms → Bacteria1040Open in IMG/M
3300011403|Ga0137313_1042646All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300012199|Ga0137383_10905322All Organisms → cellular organisms → Bacteria644Open in IMG/M
3300012209|Ga0137379_10440084All Organisms → cellular organisms → Bacteria1212Open in IMG/M
3300012212|Ga0150985_106041553All Organisms → cellular organisms → Bacteria1389Open in IMG/M
3300012212|Ga0150985_114332225All Organisms → cellular organisms → Bacteria1440Open in IMG/M
3300012212|Ga0150985_116375900All Organisms → cellular organisms → Bacteria1508Open in IMG/M
3300012212|Ga0150985_120851515All Organisms → cellular organisms → Bacteria1472Open in IMG/M
3300012379|Ga0134058_1070622All Organisms → cellular organisms → Bacteria1351Open in IMG/M
3300012388|Ga0134031_1293430All Organisms → cellular organisms → Bacteria681Open in IMG/M
3300012390|Ga0134054_1244627All Organisms → cellular organisms → Bacteria1400Open in IMG/M
3300012396|Ga0134057_1029858All Organisms → cellular organisms → Bacteria859Open in IMG/M
3300012397|Ga0134056_1277215All Organisms → cellular organisms → Bacteria1069Open in IMG/M
3300012398|Ga0134051_1290965All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300012403|Ga0134049_1145812All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300012403|Ga0134049_1299952All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300012404|Ga0134024_1327966All Organisms → cellular organisms → Bacteria701Open in IMG/M
3300012406|Ga0134053_1159199All Organisms → cellular organisms → Bacteria1375Open in IMG/M
3300012406|Ga0134053_1317486All Organisms → cellular organisms → Bacteria724Open in IMG/M
3300012410|Ga0134060_1206615All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300012469|Ga0150984_101376883All Organisms → cellular organisms → Bacteria1998Open in IMG/M
3300012469|Ga0150984_103329221All Organisms → cellular organisms → Bacteria1394Open in IMG/M
3300012469|Ga0150984_113052908All Organisms → cellular organisms → Bacteria1330Open in IMG/M
3300012948|Ga0126375_10701877All Organisms → cellular organisms → Bacteria → Acidobacteria788Open in IMG/M
3300012948|Ga0126375_11958885All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300014154|Ga0134075_10582390All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300015358|Ga0134089_10131866All Organisms → cellular organisms → Bacteria976Open in IMG/M
3300015359|Ga0134085_10383998All Organisms → cellular organisms → Bacteria628Open in IMG/M
3300015372|Ga0132256_102557567All Organisms → cellular organisms → Bacteria → Acidobacteria611Open in IMG/M
3300016319|Ga0182033_11449822All Organisms → cellular organisms → Bacteria619Open in IMG/M
3300016357|Ga0182032_10356151All Organisms → cellular organisms → Bacteria1172Open in IMG/M
3300016422|Ga0182039_11756339All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300017656|Ga0134112_10323498All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300017659|Ga0134083_10467151All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300018422|Ga0190265_12750393All Organisms → cellular organisms → Bacteria588Open in IMG/M
3300018431|Ga0066655_10491380All Organisms → cellular organisms → Bacteria812Open in IMG/M
3300018431|Ga0066655_11113319All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300018468|Ga0066662_12503981All Organisms → cellular organisms → Bacteria544Open in IMG/M
3300018476|Ga0190274_11771022All Organisms → cellular organisms → Bacteria712Open in IMG/M
3300018482|Ga0066669_10122034All Organisms → cellular organisms → Bacteria1858Open in IMG/M
3300021372|Ga0213877_10330062All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300021560|Ga0126371_13870164All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300026329|Ga0209375_1183455All Organisms → cellular organisms → Bacteria823Open in IMG/M
3300026547|Ga0209156_10221534All Organisms → cellular organisms → Bacteria893Open in IMG/M
3300026547|Ga0209156_10243755All Organisms → cellular organisms → Bacteria838Open in IMG/M
3300026550|Ga0209474_10631115All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300031231|Ga0170824_104160040All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300031231|Ga0170824_108383903All Organisms → cellular organisms → Bacteria584Open in IMG/M
3300031879|Ga0306919_11387921All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300031910|Ga0306923_11333448All Organisms → cellular organisms → Bacteria759Open in IMG/M
3300031954|Ga0306926_11799288All Organisms → cellular organisms → Bacteria695Open in IMG/M
3300032001|Ga0306922_10562234All Organisms → cellular organisms → Bacteria1212Open in IMG/M
3300032261|Ga0306920_102158653All Organisms → cellular organisms → Bacteria776Open in IMG/M
3300034659|Ga0314780_124505All Organisms → cellular organisms → Bacteria612Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil22.22%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil14.81%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil12.04%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere10.19%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil7.41%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.70%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.70%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere3.70%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.78%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere2.78%
River WaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water1.85%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.85%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.85%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.85%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.85%
Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.93%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.93%
Host-AssociatedHost-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.93%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000789Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300004803Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009233Microbial communities of water from Amazon river, Brazil - RCM9EnvironmentalOpen in IMG/M
3300009239Microbial communities of water from Amazon river, Brazil - RCM11EnvironmentalOpen in IMG/M
3300009609Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890EnvironmentalOpen in IMG/M
3300010087Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_0_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010115Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_16_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010119Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_0_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010130Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010141Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300010905Grasslands soil microbial communities from Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011403Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012379Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012388Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012390Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012396Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012397Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012398Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012403Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012404Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012406Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012410Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015359Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015EnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017656Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015EnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300021372Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300026329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300034659Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI1027J11758_1300153323300000789SoilVKSSPIHVGDFVYCRSKYYRDQLELPEXLGLVIEIKRSNFKVLYANDKRCWLPREVIARVRPERMTY
JGI1027J11758_1302969223300000789SoilVKANPVRVGDFIYCRSKYYRDQLQLPEELGLVIEIK
Ga0058862_1221233323300004803Host-AssociatedVKAAPIQVGDFVYCRSKYHRDQLQLPEEVGLVIEIKRSNFKLLYPNDKRC
Ga0066674_1033701713300005166SoilVKASPIHVGDFVYCRSQYHRDQLQLPDEWGLVIEIKRSNFKILYPNDKRCWLPREAIARI
Ga0066683_1069558713300005172SoilVKASPIHVGDFVYCRSQYHRDQLQLPDEWGLVIEIKRSNFKILYPNDKRCWLPREAIARV
Ga0066683_1077445913300005172SoilVKASPIHVGDFVFCRSQYHRDQLQLPDEWGLVIEIKRSNFKILYPNDKRCWLPREAIARV
Ga0070697_10063813823300005536Corn, Switchgrass And Miscanthus RhizosphereVKASPIHVGDFVYCRSKYYRDQLQLPEELGLVIEIKRSNFKILY
Ga0066697_1030459613300005540SoilLKAGPIHVGDFVYCRSKYYRDQLHLPEEFGLVIEIK
Ga0066697_1061489523300005540SoilVKASPIQVGDFVYCRSQYHRDQLQLPDEWGLVIEIKRSNFKILYPNDKRCWLPREAIARIRPQQPPYTTF
Ga0066701_1066163313300005552SoilVKASPIQVGDFVYCRSQYHRDQLQLPDEWGLVIEIKRSNFKILY
Ga0066704_1028185023300005557SoilVKASPILVGDFVYCRSKYYRDQLQLPEELGLVIEIKRSNFKILYP
Ga0066903_10220505013300005764Tropical Forest SoilVRRANLESRVKPSPIHVGDFVYCRSKYYRDQLQLPEEVGLVIEIKRSNFKILY
Ga0066903_10466872723300005764Tropical Forest SoilVKASSIQVGDFVYCRSKYYRDQLQLPEEVGLVIEIKRSNFK
Ga0066903_10734208513300005764Tropical Forest SoilVKASSIQVGDFIYCRSKYYRDQLQLPEEVGLVIEIKRSNFKIIYPNDKR
Ga0066903_10773725513300005764Tropical Forest SoilVKSSPIHVGDFVYCRSKYYRDQLELPEELGLVIEIKRSNFKVLY
Ga0066656_1081586123300006034SoilVKANPIHVGDFVYCRSQYHRDQLQLPDEWGLVIEIKRSNFKILYPNDKRCWLPREAIAR
Ga0066652_10136428723300006046SoilVKASPIHVGDFVFCRSQYHRDQLQLPDEWGLVIEIKRSNFKILYPN
Ga0066665_1145105323300006796SoilVKATPVYVGDFVYCGSRYYRDQLQLPEELGLVIEIKRNNFKVLYTNDKRCWLPREA
Ga0075421_10241998223300006845Populus RhizosphereVKANPVRVGDFIYCRSKYYRDQLQLPEELGLVIEIKRSN
Ga0075431_10110291323300006847Populus RhizosphereVKANPIRVGDFVYCRLKYYRDQLQLADELGLVIEIKRNNFKVLYPSDKRCWLPRDALMRVKPEHLDYT
Ga0075420_10031607123300006853Populus RhizosphereVKASPVRVGDFIYCRSKYYRDQLQLPEDLGLVIEIKRSNFKILYPNDKRCW
Ga0075425_10022134343300006854Populus RhizosphereVKPSPIHVGDFVYCRSKYYRDQLQLPEEVGLVIEIK
Ga0075424_10062829423300006904Populus RhizosphereVKASPIHVGDFVYCRSKYYRDQLQLPEELGLVIEIKRS
Ga0114129_1051036133300009147Populus RhizosphereLKQAKPDSIHVGDFIYCRSKYYRDQLQLPQELGLVIEIKRSNFKILYANDKRCWL
Ga0114129_1067108423300009147Populus RhizosphereVKASPVHVGDFVYCRSQYYRDQLELPEELGLVIEIKRNNFKILYPNDKRCWLPREAL
Ga0114129_1299335923300009147Populus RhizosphereLKATPIHVGDFVYCRSKYYRDQLELPEELGLVIEIKRSNF
Ga0111538_1094670123300009156Populus RhizosphereVKASPIHVGDFAYCRSKYYRDQLQLPEEVGLVIEI
Ga0111538_1199269313300009156Populus RhizosphereVKAAPIRVGDFVYCRSKYYRDQLQLPEELGLVIEIKRSNFKILYSNDKRCWLPREALSRV
Ga0075423_1064566223300009162Populus RhizosphereVKASSIHVGDFVYCRSKYYRDQLELPEQLGLVIEIKRSNFKVLYPNDKRCWL
Ga0103856_1010543613300009233River WaterLKQDTIHVGDFVYCRSKHYRDQLQLGPELGLVIEIKRNNLKVLYPNDKRCWLPRETVARMKPELD
Ga0103858_1007627713300009239River WaterLKPDPIRVGDFVYCRSRRYRDQLQLPEELALVLETKRSIYKVVFSSD
Ga0105347_120883313300009609SoilVKASTIHVGDFVYCRSKYYREQLQLPEEVGLVIEIKRNN
Ga0127492_105367923300010087Grasslands SoilLKAGPIHVGDFVYCRSTYYRDQLQLPEELGLVIEIKRSNFKILYTGDKRCWLPRDAVVRI
Ga0127495_112308313300010115Grasslands SoilLKAGPIHVGDFVYCRSKYYRDQLHLPEEFGLVIEIKRNNFKILYTGDKRCWLP
Ga0127452_107267833300010119Grasslands SoilVKASPIQVGDFVYCRSQYHRDQLQLPDEWGLVIEIKRSNFKILYPN
Ga0127493_111299523300010130Grasslands SoilVKASPIHVGDFVYCRSKYHRDQLQLPEELGLVIEIKRSNFKVLYPNDKRCWL
Ga0127493_117245813300010130Grasslands SoilVKASPIQVGDFVYCRSQYHRDQLQLPDEWGLVIEIKRSN
Ga0127499_113508413300010141Grasslands SoilVKASPIHVGDFVYCRSQYHRDQLQLPDEWGLVIEIKRSNFKILYPNDKRCWLP
Ga0126370_1108868013300010358Tropical Forest SoilVKSSPIHVGDFVYCRSKYYRDQLELPEELGLVIEIKRNNFKILYPNDKRCWL
Ga0126370_1256462513300010358Tropical Forest SoilVKASPIHVGDFVYCRSRYYRDQLQLPEELGLVIEIKRSNFKILYPNDKRCWLPREALARVRPEQIDYN
Ga0126372_1232909123300010360Tropical Forest SoilVKASAVRVGDFAYCRSKYYRDQLQLPEELGLVIEI
Ga0126372_1323378613300010360Tropical Forest SoilLVKTSPINVGDFVYCRSKYYRDQLQLPEEVGLVIEIKRSNFKILYPND
Ga0126378_1129218923300010361Tropical Forest SoilVKASPIHVGDFVYCRSTYYRDQLQLPEDVGLVIEIKRS
Ga0126379_1174531113300010366Tropical Forest SoilVKAAPIHVGDFVYCRSRYYRDQLQLPEELGLVIEIKRSNFKILYPSDKRCWLPRETIARIRPEQ
Ga0126379_1261204213300010366Tropical Forest SoilVKASSIQVGDFVYCRSKYYRDQLQLPEEVGLVIEIKRSNFKTIY
Ga0126381_10258417123300010376Tropical Forest SoilVKASAIQVGDFIYCRSKYYRDQLQLPEEVGLVIEIKRSNFKII
Ga0126383_1018370613300010398Tropical Forest SoilVKTSPIHVGDFVYCRSKYYRDQLELPEELGLVIEIKRSNFKVLYSNDKRCWLPREAISRV
Ga0126383_1335635023300010398Tropical Forest SoilVKAGEIHVGDFVYCRSKYYRDQLQLPEEVGLVIEIK
Ga0134122_1219854813300010400Terrestrial SoilVKPSSIVAGDFVYCRSKYHRDQLQLPDEVGLVIEIKRNNFKILYSNDK
Ga0134121_1069366413300010401Terrestrial SoilVKASPIHVGDFVHCRSKYYRDQLQLPEELGLVIEIKRSNYKVLYPNDKRCWLPRET
Ga0138112_115301713300010905Grasslands SoilVKASPIHVGDFVYCRSQYHQDQLQLPDEWGLVIEIKRSNFKILYPNDKRCWLPREAIARV
Ga0150983_1004866023300011120Forest SoilVKPSPINVGDFVYCRSKYHRDQLQLPEEVGLVIEIKC
Ga0150983_1248082013300011120Forest SoilVRPSPINVGDFVYCRSKYHRDQLQLPEEVGLVIEIKRNNFKIIYP
Ga0150983_1404003313300011120Forest SoilVKPSTINVGDFVYCRSKYYRDQLQLPEEVGLVIEIKRNNFKVLYPSDKRCWLPRD
Ga0137313_104264613300011403SoilVKPSTIHVGDFVYCRSKYYRDQLQLPEELGLVIEIKRNNFKILYSNDKRCWLPREV
Ga0137383_1090532223300012199Vadose Zone SoilVKASPIHVGDFVYCRSKYHRDQLQLPEELGLVIEIKRSNFKVLYPEDKRCWLPREAIA
Ga0137379_1044008423300012209Vadose Zone SoilVKPSPIHVGDFAYCRSPYYRDQLQLPEELGLVIEIKRSNFKI
Ga0150985_10604155323300012212Avena Fatua RhizosphereVKAPPIRVGDFIYCRSKYYRDQLQLPEELGLVIEIKRSNYKILYPN
Ga0150985_11433222513300012212Avena Fatua RhizosphereLKAAPIHVGDFVYCRSRYYRDQLQLPEELGLVIEIKRSNFKVLYPTDKRCWLPRRSEER
Ga0150985_11637590023300012212Avena Fatua RhizosphereLKASPIQVGDFVYCRSKYYRDQLQLPEELGLVIEIKRSNFKILYSNDKRCWLPRETIAQV
Ga0150985_12085151523300012212Avena Fatua RhizosphereVKASPIQVGDFVYCRSKYYRDQLQLPEEVGLVIEIKRNNFKVLYPND
Ga0134058_107062213300012379Grasslands SoilVKASPIHVGDFVYCRSQYHQDQLQLPDEWGLVIEIKRSNFKIL
Ga0134031_129343023300012388Grasslands SoilVKASPIHVGDFVYCRSQYHRDQLQLPEQWGLVIEIKRSNF
Ga0134054_124462713300012390Grasslands SoilVKASPIHVGDFVYCRSKYHRDQLQLPEELGLVIEIKRSNFKVLYPNDKRCWLP
Ga0134057_102985813300012396Grasslands SoilVKASPIHVGDFVFCRSQYHRDQLQLPDEWGLVIEIKRSNFKIL
Ga0134056_127721513300012397Grasslands SoilVKASPIHVGDFVFCRSQYHRDQLQLPDEWGLVIEIKRSNFKILYPNDKRCWLPREAIARIRPQQP
Ga0134051_129096523300012398Grasslands SoilLKAGPIHVGDFVYCRSKYYRDQLQLPEELGLVIEIKRSNFKILYTGDKR
Ga0134049_114581213300012403Grasslands SoilVKASPIQVGDFVYCRSQYHRDQLQLPDEWGLVIEIKRSNFKILYPNDKRCWLPREAIAR
Ga0134049_129995223300012403Grasslands SoilLKAGPIHVGDFVYCRSTYYRDQLQLPEELGLVIEIKRSNFKIL
Ga0134024_132796613300012404Grasslands SoilVKASPIHVGDFVYCRSQYHRDQLQLPEQWGLVIEIKRSNFKILYPNDKRCWLPREAIARVRPQQPPYT
Ga0134053_115919913300012406Grasslands SoilVKASPIHVGDFVYCRSKYHRDQLQLPEELGLVIEIKRSNFKVLY
Ga0134053_131748613300012406Grasslands SoilLKAGPIHVGDFVYCRSTYYRDQLQLPEELGLVIEIKRSNFKILYTGDKRCWLPRE
Ga0134060_120661513300012410Grasslands SoilLKAGPIHVGDFVYCRSTYYRDQLQLPEELGLVIEIKRSNFKILYT
Ga0150984_10137688313300012469Avena Fatua RhizosphereLKAAPIHVGDFVYCRSRYYRDQLQLPEELGLVIEIK
Ga0150984_10332922123300012469Avena Fatua RhizosphereVKAPPIRVGDFIYCRSKYYRDQLQLPEELGLVIEIKRSNYKILYPND
Ga0150984_11305290813300012469Avena Fatua RhizosphereVKATPVQVGDFVYCRSKYYRDQLQLPEEVGLVIEIKRSNFK
Ga0126375_1070187723300012948Tropical Forest SoilVKASPIQVGDFAYCRSRYYRDQLQLPEESGLVIEIKRNNFKVLYPNDKR*
Ga0126375_1195888513300012948Tropical Forest SoilVKASPIHVGDFVFCRSQYHRDQLQLPDEWGLVIEVK
Ga0157375_1379774423300013308Miscanthus RhizosphereLSASLTQLKAEVIHAGDFVYCRSKRYRDSLQLPKELGLVIEI
Ga0134075_1058239013300014154Grasslands SoilVKASPIHVGDFVYCRSKYHRDQLQLPEELGLVIEIKRSNFKVLYPNDKRCWLPREAIVRVRPEQPTY
Ga0134089_1013186613300015358Grasslands SoilVKASPIHVGDFVFCRSRYHRDQLQLPDEWGLVIEIKRSNFKI
Ga0134085_1038399813300015359Grasslands SoilLKAGPIRVGDFVYCRSKYYRDQLQLPEELGLVIEVKRTNFKILYTGDKRCWLPREAL
Ga0132256_10255756713300015372Arabidopsis RhizosphereMAVKASPINVGDFVYCRSKYYRDQLQLPEEVGLVIEIKRNNLKLLYPNDKRC
Ga0182033_1144982223300016319SoilVKASSIQVGDFVYCRSKYYRDQLQLPEEVGLVIEIKRNNFKILYP
Ga0182032_1035615113300016357SoilVKASEIHVGDFAYCRSKYYRDQLQLAEVVGLVIEIKRSNFKLLYPDDKRCW
Ga0182039_1175633913300016422SoilVKAAPVHVGDFVYCRSRYYRDQLQLPEELGLVIEIKRSNFKIL
Ga0134112_1032349813300017656Grasslands SoilLKTEGIRTADFVYCRSKYYRDQLQLPEDLGLVIEIK
Ga0134083_1046715113300017659Grasslands SoilLKTEGIRTADFVYCRSKYYRDQLQLPEDLGLVIEIKRSN
Ga0190265_1275039313300018422SoilLKPSPIHVGDFVYCRSQYHRDQLQIERELALVIEIKRSNFKILFANDKRVWLPRETIVKMLPGQMDY
Ga0066655_1049138023300018431Grasslands SoilVKASPIHVGDFVFCRSQYHRDQLQLPDEWGLVIEIKRSNFKILYPNDKRCWLPREAIAR
Ga0066655_1111331923300018431Grasslands SoilVKASPIHVGDFVYCRSQYHRDQLQLPDEWGLVIEIKRSNFKILY
Ga0066662_1250398123300018468Grasslands SoilLKAGPIHVGDLLYCRSKYYRDQLHLPEEFGLVIEIKRNNFKILYTGDKRC
Ga0190274_1177102223300018476SoilLKPDTIHVGDFVYCRSKYYRDQLELPKELGLVIEIKR
Ga0066669_1012203413300018482Grasslands SoilVKASPIHVGDFVFCRSQYHRDQLQLPDEWGLVIEIKRSNFK
Ga0213877_1033006213300021372Bulk SoilMRRADDVQSRVKAAPIQVGDFVFCRSKYYRDQLQLPEEVGLVIEIKRSNFKIIYVGG
Ga0126371_1387016423300021560Tropical Forest SoilVKASSIQVGDFIYCRSKYYRDQLQLPEEVGLVIEIKRSN
Ga0209375_118345513300026329SoilVKASPIHVGDFVYCRSQYHRDQLQLPEQWGLVIEIKRSNFKILYPNDKRCWLPREAIARFRPQQ
Ga0209156_1022153413300026547SoilVKASPIHVGDFVYCRSQYHRDQLQLPDEWGLVIEIKRSNFKI
Ga0209156_1024375523300026547SoilVKASPILVGDFVYCRSKYYRDQLQLPEELGLVIEIKRSNFKIFYPSHKRCWLPREALARFRPEQLGY
Ga0209474_1063111513300026550SoilVKASPIHVGDFVYCRSQYHRDQLQLPDEWGLVIEIKRSNFK
Ga0170824_10416004023300031231Forest SoilLKTDAIHVGDFIYCKSKYYRDQLQLQKELGLVIEMIKKT
Ga0170824_10838390323300031231Forest SoilLKPESIHIGDFVYCRSKYYRDQLQLPEELGLVIEIKRSNFKVLYSNDKRCWLPREAIGKL
Ga0306919_1138792123300031879SoilVKAAPVHVGDFVYCRSRYYRDQLQLPEELGLVIEIKRSNFKILYP
Ga0306923_1133344823300031910SoilVKAAPVHVGDFVYCRSRYYRDQLQLPEELGLVIEIKRSNFKI
Ga0306926_1179928823300031954SoilVKAAPVHVGDFVYCRSRYYRDQLQLPEELGLVIEIKRSNFKILYPNDKRCWLPREA
Ga0306922_1056223423300032001SoilVKAAPVHVGDFVYCRSRYYRDQLQLPEELGLVIEIKRSNFKILYPNDKRCWLPREAI
Ga0306920_10215865323300032261SoilVKASPIHVGDFVYCRSKYYRDQLQLPEELGLVIEIKRNNFKILYPND
Ga0314780_124505_465_6113300034659SoilVKAPTINVGDFVYCRSKYYRDQLQLPEELGLVIEIKRNNFKILYPNDKR


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