Metagenome / Metatranscriptome Family F090152

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090152
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	49 residues
Representative Sequence	SLFLATVPDPSPFHGGYVIGKSLVRPDPAALDRSLARRLWEESARLVGL
Number of Associated Samples	78
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.80 %
% of genes near scaffold ends (potentially truncated)	97.22 %
% of genes from short scaffolds (< 2000 bps)	91.67 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.815 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (42.593 % of family members)
Environment Ontology (ENVO)	Unclassified (60.185 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.556 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.68% β-sheet: 5.19% Coil/Unstructured: 70.13%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00027	cNMP_binding	35.19
PF00484	Pro_CA	10.19
PF00893	Multi_Drug_Res	5.56
PF04392	ABC_sub_bind	1.85
PF08281	Sigma70_r4_2	1.85
PF13672	PP2C_2	0.93
PF00072	Response_reg	0.93
PF00923	TAL_FSA	0.93
PF13519	VWA_2	0.93
PF04055	Radical_SAM	0.93
PF12680	SnoaL_2	0.93
PF05717	TnpB_IS66	0.93
PF00732	GMC_oxred_N	0.93
PF04542	Sigma70_r2	0.93
PF16576	HlyD_D23	0.93
PF02371	Transposase_20	0.93
PF00589	Phage_integrase	0.93
PF00005	ABC_tran	0.93
PF00528	BPD_transp_1	0.93
PF00498	FHA	0.93
PF04545	Sigma70_r4	0.93
PF05816	TelA	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	10.19
COG2076	Multidrug transporter EmrE and related cation transporters	Defense mechanisms [V]	5.56
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.85
COG0176	Transaldolase/fructose-6-phosphate aldolase	Carbohydrate transport and metabolism [G]	0.93
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.93
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.93
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.93
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.93
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93
COG3853	Uncharacterized conserved protein YaaN involved in tellurite resistance	Defense mechanisms [V]	0.93
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.81 %
Unclassified	root	N/A	10.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.81 %
Unclassified	root	N/A	10.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.81 %
Unclassified	root	N/A	10.19 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	77.78 %
Unclassified	root	N/A	10.19 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	48.15 %
Unclassified	root	N/A	10.19 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	35.19 %
Unclassified	root	N/A	10.19 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	6.48 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.78 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.85 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	35.19 %
Unclassified	root	N/A	10.19 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	4.63 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.93 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	35.19 %
Unclassified	root	N/A	10.19 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	3.70 %
Methylovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum	0.93 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → environmental samples	0.93 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.93 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.93 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	35.19 %
Unclassified	root	N/A	10.19 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	3.70 %
Methylovulum psychrotolerans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum → Methylovulum psychrotolerans	0.93 %
uncultured Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → environmental samples → uncultured Acetobacteraceae bacterium	0.93 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.93 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.93 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	35.19 %
Unclassified	root	N/A	10.19 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	3.70 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Methylovulum psychrotolerans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum → Methylovulum psychrotolerans	0.93 %
uncultured Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → environmental samples → uncultured Acetobacteraceae bacterium	0.93 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.93 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003223\|JGI26343J46809_1012308	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300003223\|JGI26343J46809_1021543	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300005177\|Ga0066690_10306477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1073	Open in IMG/M
3300005332\|Ga0066388_101301892	All Organisms → cellular organisms → Bacteria → Proteobacteria	1253	Open in IMG/M
3300005454\|Ga0066687_10872451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	536	Open in IMG/M
3300006796\|Ga0066665_10250382	All Organisms → cellular organisms → Bacteria	1402	Open in IMG/M
3300009088\|Ga0099830_11371543	Not Available	588	Open in IMG/M
3300009143\|Ga0099792_11278220	Not Available	500	Open in IMG/M
3300010048\|Ga0126373_12464938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	579	Open in IMG/M
3300010359\|Ga0126376_10324369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → environmental samples → uncultured Acetobacteraceae bacterium	1351	Open in IMG/M
3300010360\|Ga0126372_12497986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300010361\|Ga0126378_11908910	Not Available	676	Open in IMG/M
3300010362\|Ga0126377_11674563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	711	Open in IMG/M
3300010376\|Ga0126381_100619614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	1541	Open in IMG/M
3300010376\|Ga0126381_100756462	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300012362\|Ga0137361_10144250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2122	Open in IMG/M
3300012362\|Ga0137361_10788374	All Organisms → cellular organisms → Bacteria → Proteobacteria	865	Open in IMG/M
3300016270\|Ga0182036_10153919	Not Available	1640	Open in IMG/M
3300016270\|Ga0182036_10194923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1481	Open in IMG/M
3300016270\|Ga0182036_10827669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	756	Open in IMG/M
3300016270\|Ga0182036_10961199	All Organisms → cellular organisms → Bacteria → Proteobacteria	703	Open in IMG/M
3300016270\|Ga0182036_11677197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300016294\|Ga0182041_10139678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1851	Open in IMG/M
3300016294\|Ga0182041_10471140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1083	Open in IMG/M
3300016319\|Ga0182033_12014505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300016341\|Ga0182035_10072302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2432	Open in IMG/M
3300016341\|Ga0182035_10696917	All Organisms → cellular organisms → Bacteria → Proteobacteria	884	Open in IMG/M
3300016341\|Ga0182035_10737047	All Organisms → cellular organisms → Bacteria → Proteobacteria	861	Open in IMG/M
3300016357\|Ga0182032_10388636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1126	Open in IMG/M
3300016404\|Ga0182037_10325114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1244	Open in IMG/M
3300016404\|Ga0182037_11763125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	553	Open in IMG/M
3300016422\|Ga0182039_10479189	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300018058\|Ga0187766_11242176	Not Available	541	Open in IMG/M
3300021168\|Ga0210406_10480442	All Organisms → cellular organisms → Bacteria → Proteobacteria	985	Open in IMG/M
3300021178\|Ga0210408_11327583	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300021406\|Ga0210386_10113218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	2237	Open in IMG/M
3300021441\|Ga0213871_10013001	All Organisms → cellular organisms → Bacteria → Proteobacteria	1946	Open in IMG/M
3300021444\|Ga0213878_10086959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1258	Open in IMG/M
3300021479\|Ga0210410_11089346	Not Available	689	Open in IMG/M
3300021559\|Ga0210409_10591610	All Organisms → cellular organisms → Bacteria → Proteobacteria	977	Open in IMG/M
3300021560\|Ga0126371_10594029	All Organisms → cellular organisms → Bacteria → Proteobacteria	1256	Open in IMG/M
3300021560\|Ga0126371_11349050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	845	Open in IMG/M
3300021560\|Ga0126371_12175968	Not Available	669	Open in IMG/M
3300021560\|Ga0126371_12240648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	659	Open in IMG/M
3300021560\|Ga0126371_12513579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623	Open in IMG/M
3300022507\|Ga0222729_1076684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300022527\|Ga0242664_1150154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300022724\|Ga0242665_10228301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	625	Open in IMG/M
3300022726\|Ga0242654_10027697	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300026552\|Ga0209577_10434321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	925	Open in IMG/M
3300027829\|Ga0209773_10145922	Not Available	985	Open in IMG/M
3300027903\|Ga0209488_10838998	Not Available	649	Open in IMG/M
3300030597\|Ga0210286_1265564	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300031057\|Ga0170834_107456292	All Organisms → cellular organisms → Bacteria → Proteobacteria	679	Open in IMG/M
3300031057\|Ga0170834_112123183	All Organisms → cellular organisms → Bacteria → Proteobacteria	1194	Open in IMG/M
3300031544\|Ga0318534_10000948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	10849	Open in IMG/M
3300031640\|Ga0318555_10597999	All Organisms → cellular organisms → Bacteria → Proteobacteria	597	Open in IMG/M
3300031680\|Ga0318574_10243696	Not Available	1039	Open in IMG/M
3300031708\|Ga0310686_102206616	All Organisms → cellular organisms → Bacteria → Proteobacteria	1156	Open in IMG/M
3300031719\|Ga0306917_11153622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	602	Open in IMG/M
3300031747\|Ga0318502_10223205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1095	Open in IMG/M
3300031747\|Ga0318502_10840577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300031754\|Ga0307475_10020605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4623	Open in IMG/M
3300031763\|Ga0318537_10193790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	756	Open in IMG/M
3300031765\|Ga0318554_10498108	All Organisms → cellular organisms → Bacteria → Proteobacteria	689	Open in IMG/M
3300031770\|Ga0318521_10450241	All Organisms → cellular organisms → Bacteria → Proteobacteria	771	Open in IMG/M
3300031780\|Ga0318508_1039658	All Organisms → cellular organisms → Bacteria → Proteobacteria	1220	Open in IMG/M
3300031781\|Ga0318547_10547097	All Organisms → cellular organisms → Bacteria → Proteobacteria	716	Open in IMG/M
3300031781\|Ga0318547_10547144	All Organisms → cellular organisms → Bacteria → Proteobacteria	716	Open in IMG/M
3300031782\|Ga0318552_10270704	All Organisms → cellular organisms → Bacteria → Proteobacteria	863	Open in IMG/M
3300031792\|Ga0318529_10221733	All Organisms → cellular organisms → Bacteria → Proteobacteria	878	Open in IMG/M
3300031794\|Ga0318503_10075124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1055	Open in IMG/M
3300031805\|Ga0318497_10607602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	613	Open in IMG/M
3300031835\|Ga0318517_10196884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	907	Open in IMG/M
3300031845\|Ga0318511_10377738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	647	Open in IMG/M
3300031859\|Ga0318527_10466262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	539	Open in IMG/M
3300031880\|Ga0318544_10148641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	898	Open in IMG/M
3300031890\|Ga0306925_10004548	All Organisms → cellular organisms → Bacteria	12546	Open in IMG/M
3300031893\|Ga0318536_10489293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	619	Open in IMG/M
3300031894\|Ga0318522_10301867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300031912\|Ga0306921_10774264	All Organisms → cellular organisms → Bacteria → Proteobacteria	1098	Open in IMG/M
3300031912\|Ga0306921_10920826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	991	Open in IMG/M
3300031912\|Ga0306921_12104240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	598	Open in IMG/M
3300031912\|Ga0306921_12556136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300031942\|Ga0310916_10880279	All Organisms → cellular organisms → Bacteria → Proteobacteria	752	Open in IMG/M
3300031945\|Ga0310913_10014842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	4747	Open in IMG/M
3300031945\|Ga0310913_10478785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	884	Open in IMG/M
3300031946\|Ga0310910_10489394	All Organisms → cellular organisms → Bacteria → Proteobacteria	976	Open in IMG/M
3300031946\|Ga0310910_11357616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	548	Open in IMG/M
3300031947\|Ga0310909_10548566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	967	Open in IMG/M
3300031947\|Ga0310909_10887463	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300031954\|Ga0306926_11380425	All Organisms → cellular organisms → Bacteria → Proteobacteria	818	Open in IMG/M
3300031954\|Ga0306926_11695185	All Organisms → cellular organisms → Bacteria → Proteobacteria	721	Open in IMG/M
3300031954\|Ga0306926_12954181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300031959\|Ga0318530_10495659	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300032001\|Ga0306922_10240712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum → Methylovulum psychrotolerans	1944	Open in IMG/M
3300032025\|Ga0318507_10337261	All Organisms → cellular organisms → Bacteria → Proteobacteria	656	Open in IMG/M
3300032042\|Ga0318545_10180751	All Organisms → cellular organisms → Bacteria → Proteobacteria	753	Open in IMG/M
3300032059\|Ga0318533_10350493	All Organisms → cellular organisms → Bacteria → Proteobacteria	1075	Open in IMG/M
3300032076\|Ga0306924_11582279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	691	Open in IMG/M
3300032076\|Ga0306924_11795431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	639	Open in IMG/M
3300032180\|Ga0307471_100546737	All Organisms → cellular organisms → Bacteria → Proteobacteria	1312	Open in IMG/M
3300032261\|Ga0306920_100884963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1306	Open in IMG/M
3300032261\|Ga0306920_101184666	All Organisms → cellular organisms → Bacteria → Proteobacteria	1104	Open in IMG/M
3300033289\|Ga0310914_10036068	All Organisms → cellular organisms → Bacteria	3985	Open in IMG/M
3300033289\|Ga0310914_10599323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	993	Open in IMG/M
3300033289\|Ga0310914_11269899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	638	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Host-Associated	Host-Associated	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.30%
Aquatic	Environmental → Aquatic	2.78%
Plants	Host-Associated → Plants	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.30%
Freshwater	Environmental → Aquatic → Freshwater	2.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	94.44%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Loam	Environmental → Terrestrial → Soil → Loam	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	73.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.70%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	42.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.11%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.70%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.78%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003223	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300030597	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE046SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26343J46809_10123081	3300003223	Bog Forest Soil	ETSLFLATVLDPAPFHGGYVIGKSLAHPDPAALDRGLARRLWDESAQLVGL*
JGI26343J46809_10215432	3300003223	Bog Forest Soil	ETSLFLATVPDPTPFHGGYVIGKSLARPDPEALDRSLARRLSEESARLVEL*
Ga0066690_103064771	3300005177	Soil	PDPTPFHGSYVIRKTVANPDPAALDGGLGRRLWNESARLVGL*
Ga0066388_1013018921	3300005332	Tropical Forest Soil	EKGAETSLFLATVPDPTPFNGGYVIGKSLARPDLAALDSSLGRHLWNESARLVGL*
Ga0066687_108724511	3300005454	Soil	TVPDAKFFHGGYVIRKVLTQPDPAALDSGLARRLWEESARLVGL*
Ga0066665_102503821	3300006796	Soil	TVSDAAPFHGGYVIGKVLARPDPTALDANLARRLWDESARLAGL*
Ga0099830_113715431	3300009088	Vadose Zone Soil	FLATVPDPTPFHRGYVIRKALAQPDPTALDSDLARSLWDESARLVGL*
Ga0099792_112782202	3300009143	Vadose Zone Soil	ETPLFLATVPDPAPFHGGYVIRKALAHPDPAALDGALARRLWDESARLVGL*
Ga0126373_124649381	3300010048	Tropical Forest Soil	ETTLFLATIADATPFNGGYVVGKVLERPDPAALDDSLARRLWDESARLVGPFS*
Ga0126376_103243692	3300010359	Tropical Forest Soil	LFLATIANATPFNGGYVVSEVRERPDPAALDDRLARRLWDESMRLVGPLS*
Ga0126372_124979861	3300010360	Tropical Forest Soil	MKPFMASSDKGAETSLFLSTVPDPEPFHGGYVIGKSLTQPDPMALNRKLARGL
Ga0126378_119089103	3300010361	Tropical Forest Soil	FLATAPDAKPFHGGYVIRKILAQPDPAALDAGQARRLWQESARLVGLNRDSP*
Ga0126377_116745631	3300010362	Tropical Forest Soil	ATVPDPEPFHGGYIIGKSLTRPDPMALNRKLARGLWEESARLTGM*
Ga0126381_1006196143	3300010376	Tropical Forest Soil	AETAVFLATAPDAKPFHGGYVIRKILAEPDPAALDRELTRRLWDESARLVGL*
Ga0126381_1007564623	3300010376	Tropical Forest Soil	KGAETTLFLATIANATPFNGGYVVSKVLERPDSAALNDSLARSLWDESARLVVP*
Ga0137361_101442503	3300012362	Vadose Zone Soil	FLATVSDPQPFHGGYVIGKTLARADPAAPDSNVARRLWDESTRLTGL*
Ga0137361_107883743	3300012362	Vadose Zone Soil	VFLATAPNPAPFHGGYVIRKALAEPDPTALDGGLARRLWDESARLVGL*
Ga0182036_101539191	3300016270	Soil	GAETTLFLATIADATPFNGGYVVGKVRERPDPAALDDRLARRLWDESGRLVGP
Ga0182036_101949231	3300016270	Soil	SETSLFLATVPDPTPFHRGYVIGKSLARPDPMALDSNLAHSLWEESARLAGL
Ga0182036_108276691	3300016270	Soil	TIADATPFNGGYVVGKVLERPDPAALDDSLARRLWDESARLVGPFS
Ga0182036_109611992	3300016270	Soil	SETSLFLATVPDPTPFHRGYVIGKSLAQPDLTALDSGLAFRLWEESARLAGL
Ga0182036_116771971	3300016270	Soil	KGAETTLFLATIADATPFNGGYVVGKVRERPDPAALDDSLARRLWDESARLVGP
Ga0182041_101396781	3300016294	Soil	IFLATVPDPGPFHGGYVIGKTLAQPDPLALDEGLARRLWDESARLVGL
Ga0182041_104711401	3300016294	Soil	TLFLATIADATPFNGGYVVGKVRERPDPAALDDRLARRLWDESGRLVGP
Ga0182033_120145051	3300016319	Soil	EKGAETTLFLATIADATPFNGGYVVGKVRERPDPAALDDRLARRLWDESGRLVGP
Ga0182035_100723021	3300016341	Soil	TEVVWRLMKPFMTSAEKGAETSVFLATAPDPTPFHRGYVIGKSLARPDPTALDGGLARHLLGSARLAEL
Ga0182035_106969171	3300016341	Soil	PASLERRSAPFHRGYVIGNSLVRPDPMALDSGLALRLWEESARLA
Ga0182035_107370472	3300016341	Soil	FLATVPDPTPFHRGYVIGKSLARPDPMSLDSNLAHSLWEESARLAGL
Ga0182032_103886361	3300016357	Soil	TLFLATIADATPFNGGYVVGKVRERPDPAALDDRLARRLWDESGRLVGS
Ga0182037_103251143	3300016404	Soil	AEKGAETTLFLATIADATPFNGGYVVGKVRERPDPAALDDRLARRLWDESGRLVGP
Ga0182037_117631251	3300016404	Soil	TLFLATIADATPFNGGYVVGKVLECPDLAALDDSLARRLWDESARLVRP
Ga0182039_104791891	3300016422	Soil	TSIFLVTLADPKPFHGGYAIRNKLAQPDPAALDSRLARRLWDESARLVGV
Ga0187766_112421761	3300018058	Tropical Peatland	FLATVPDPAPFDGGYVVGKRLARPDPAALDTGLARRLWEESARMVGL
Ga0210406_104804422	3300021168	Soil	TSLFLATVPDPEPFHGGYVIGKSLARPDPVALDRKLMHGLWDESARLTGL
Ga0210408_113275832	3300021178	Soil	VPDPKPFHGGYLIRKALTPPDPAALDRGLARRLWDQSTRLVGL
Ga0210386_101132185	3300021406	Soil	THPDPAPFNGGYVVGKALARPDPAARDDGMAGCLWEESARLAGL
Ga0213871_100130014	3300021441	Rhizosphere	LARVPDPTPFHGGNITGKTLVRPDPAASDAVVARRLWDESARIVGL
Ga0213878_100869592	3300021444	Bulk Soil	GRIGSLADKRTLARVPDPTPFHGGNITGKTLVRPDPAASDAVVARRLWDESARIVGL
Ga0210410_110893462	3300021479	Soil	GAETSLFLATVPDPAPFHGGYVVGRALERPDPAALDDELARRLWDESARLVGL
Ga0210409_105916101	3300021559	Soil	PVFLATVSDPKPFHGGYVIRKALASPDPAALDRGLARRLWDESAWLVGL
Ga0126371_105940291	3300021560	Tropical Forest Soil	TVPDPEPFHGGYVIGKSLTQPDPMALNRKLARGLWDESARLTGM
Ga0126371_113490503	3300021560	Tropical Forest Soil	SLFLATVPDPTPFHRGYVIGKSLARPDPMALDSGLAFRLWEESARLTGL
Ga0126371_121759682	3300021560	Tropical Forest Soil	TSVFLAMVPDPTPFHGGYVIGKSLARPDPAALDIGLARRLWDESTRLAGL
Ga0126371_122406482	3300021560	Tropical Forest Soil	FLATVPDPRPFHGGYVIRKTLAQPDPLALDDGLARRLWDESARLVGL
Ga0126371_125135791	3300021560	Tropical Forest Soil	ETTLFLATIADATPFNGGYVVSKVLERPDPAALDDSLARRLWDESARLVGP
Ga0222729_10766842	3300022507	Soil	ATVPDPQPFHGGYVVGKTLARADPAALDGRVARRLWDESTRLTGL
Ga0242664_11501541	3300022527	Soil	EGAKTSLFLATVSDPQPFHGGYVVGKTLARADPAALDGRVARRLWDESTRLTGL
Ga0242665_102283011	3300022724	Soil	AETSLFLAAVCDPQPFHAGYVIGKTLARADPAALDSNVARRLWDESTRLIGP
Ga0242654_100276972	3300022726	Soil	MTSAEKGAEASLFLATVPDPEPFHGGYVIGKSLARPDPVALDRKLMHGLWDESARLTGL
Ga0209577_104343212	3300026552	Soil	ETPVFLATVPDPKPFHGGYVIRKTLAQPDPAALDNNLARRLWDESSRLVGL
Ga0209773_101459222	3300027829	Bog Forest Soil	LFLATVPDAAPFHGGYVVRKALARPDPVALDADLARRLWDESARLVGL
Ga0209488_108389981	3300027903	Vadose Zone Soil	ETPLFLATVPDPAPFHGGYVIRKALAHPDPAALDGALARRLWDESARLVGL
Ga0210286_12655641	3300030597	Soil	TVPDATPFHGGYVVRKALARPNPVALDADLARRLWAESTRLVGL
Ga0170834_1074562922	3300031057	Forest Soil	LATVSDPQPFHGGYVVGKTLARADPAALDGSVARRLWDESTRLTGL
Ga0170834_1121231831	3300031057	Forest Soil	ETSLFLATVPDPEPFHGGYVIGQSLTRPDPVAFNRKLARGLWDESARLTGLSNTGQ
Ga0318534_100009481	3300031544	Soil	FLATIADATPFNGGYVVGKVLERPDPAALDDSLARRLWDESARLVRP
Ga0318555_105979992	3300031640	Soil	AETSLFLATVPDPTPFHGGYVIGKSLARPDPEALNRGLARRLWEESARLVEL
Ga0318574_102436961	3300031680	Soil	TLFLATIADATPFNGGYVVGKVRERPDPAALDDSLARRLWDESARLVGP
Ga0310686_1022066163	3300031708	Soil	ATVPDPAPFHGGYVVGRALERPDPVALDDELARRLWEESARLVGM
Ga0306917_111536222	3300031719	Soil	LFLATVCDPTPFHGGYVIGKSLARPDPAALDRSLARGLWDESARLVRL
Ga0318502_102232053	3300031747	Soil	AEKGAETTLFLATIADATPFNGGYVVGKVRERPDPAALDDSLARRLWDESARLVAP
Ga0318502_108405771	3300031747	Soil	VVLATIADATPFNGGYVVGKVRERPDPAALDDRLARRLWDESGRLVGP
Ga0307475_100206051	3300031754	Hardwood Forest Soil	ATVHDPTPFQGGYVIGKSLARPDPTALDSGLARRLWEESTRLVGL
Ga0318537_101937901	3300031763	Soil	AETTLFLATIADATPFNGGYVVGKVRERPDPAALDDSLARRLWDESARLVGP
Ga0318554_104981081	3300031765	Soil	LFLATVPDPTPFNRGYVIGKSLARPDPAALDSSLGRHLWNESARLVGL
Ga0318521_104502411	3300031770	Soil	FMMSAEKGAETSLFLATVPDPTPFHRGYVIGKSLARPDPMALDSNLAHSLWEESARLAGL
Ga0318508_10396583	3300031780	Soil	SMYLATVPDPTPFQGGYVVRKMPACPDRAALDNDLARSLWGESARLVGL
Ga0318547_105470972	3300031781	Soil	TVPDPTPFNGGYVIGKSLARPDFAALDSSLGRHLWNESARLVGL
Ga0318547_105471441	3300031781	Soil	AETSLFLATVPDPTPFHGGYVIGKSLVRPDPEALDRSLARRLWEESARLVEL
Ga0318552_102707041	3300031782	Soil	PDPTPFNGGYVIGKSLARPDFAALDSSLGRHLWNESARLVGL
Ga0318529_102217331	3300031792	Soil	VPDPTPFNRGYVIGQSLARPDPAALDSSLGRHLWNESARLVGL
Ga0318503_100751241	3300031794	Soil	GTETTLFLATIADASPFNGGYVVSKVLECPDLAALDDSLARRLWDESARLVRP
Ga0318497_106076021	3300031805	Soil	VFLATVPDPKPFHGGYVIRKALTQPDPAALDSGLGRRLWDESARLAGL
Ga0318517_101968841	3300031835	Soil	AHKGAETTLFLATIADATPFNGGYVVGKVRERPDPAALDDSLARRLWDESARLVGP
Ga0318511_103777381	3300031845	Soil	LFLATIADATPFNGGYVVGKVRERPDPAALDDSLARRLWDESARLVGP
Ga0318527_104662622	3300031859	Soil	LFLATVPDPTPFHRGYVIGKSLARPDPMALDSNLAHSLWEESARLAGL
Ga0318544_101486411	3300031880	Soil	VQGAETPVFLATVADPTPFHGGYVVRKTLTQPGSPALDSRLARRLWDESTRLVEI
Ga0306925_1000454812	3300031890	Soil	AETTLFLATIADATPFNGGYVVGKVLERPDPAALDDSLARRLWDESARLVRP
Ga0318536_104892933	3300031893	Soil	ATVPDPTPFHGGYVIGKSLAHPDPTALDGGLARRLWQESARLAGL
Ga0318522_103018671	3300031894	Soil	LATIADATPFNGGYVVGKVRERPDPAALDDRLARRLWDESGRLVGP
Ga0306921_107742642	3300031912	Soil	FLATVPDPEPFHGGYVIGKSLTQPDPMALNRKLARGLWEESARLTGM
Ga0306921_109208262	3300031912	Soil	VFLATVADPTPFHGGYVVRKTLTQPGSPALDSRLARRLWDESARLVEI
Ga0306921_121042401	3300031912	Soil	LFLATVPDPKPFHGGYVIGKSLARPDPAALDSDKARGLWEESARLAEL
Ga0306921_125561361	3300031912	Soil	AEKGAETSLFLATVPDPTPFHRGYVIGKSLARPDPIALDSGLALRLWEESARLAGL
Ga0310916_108802791	3300031942	Soil	LFLATVPDPTPFHRGYVIGKSLARPDTIALDSGLALRLWEESARLAGL
Ga0310913_100148421	3300031945	Soil	ETTLFLATIADAPPFNGGYVVSKVLERPDPAALDDSLARRLWDESARLVRP
Ga0310913_104787851	3300031945	Soil	IADATPFNGGYVVGKVRERPDPAALDDSLARRLWDESARLVAP
Ga0310910_104893941	3300031946	Soil	TVPDPTPFHRGYVIGKSLARPDTIALDSGLALRLWEESARLAGL
Ga0310910_113576161	3300031946	Soil	EKGAETTLFLATIADATPFNGGYVVDKLRERPDPATLDDSPARRLWDESARLVGP
Ga0310909_105485662	3300031947	Soil	TTLFLATIADATPFNGGYVVGKVRERPDPAALDDSLARRLWDESARLVGR
Ga0310909_108874631	3300031947	Soil	GAETSLFLATVPDPAPFDGGYVVGKTLARPDPAALDTGLARRLWDESARMVGL
Ga0306926_113804252	3300031954	Soil	VPDPKPFHGGYVIGKSLVRPDPAALDSNLARSLWEESARLAKL
Ga0306926_116951851	3300031954	Soil	ATTPDPPPFHRGYVIGKSLVRPDPAALDSNLARSLWNESARLVGL
Ga0306926_129541811	3300031954	Soil	LATIADATPFNGGYVVGKVRERPDPAALDDSLARRLWDESARLVAP
Ga0318530_104956591	3300031959	Soil	VPDPTPFHRGYVIGKSLARPDPIALDSGLALRLWEESARLAGL
Ga0306922_102407123	3300032001	Soil	TIADATPFSGGYVVGKVRERPDPAALDDSLARRLWDESARLVGP
Ga0318507_103372611	3300032025	Soil	AETSLFLATVPDPTPFNRGYVIGKSLARPDPAALDSSLGRHLWNESARLVGL
Ga0310911_109298971	3300032035	Soil	IADATPFNGGYVVGKVRERPDPAALDDRLARRLWDESGRLVGP
Ga0318545_101807511	3300032042	Soil	ATVPDPTPFNRGYVIGKSLARPDPAALDSSLGRHLWNESARLVGL
Ga0318533_103504931	3300032059	Soil	SLFLATVPDPTPFHRGYVIGKSLAQPDLTALDSGLAFRLWEESARLAGL
Ga0306924_115822791	3300032076	Soil	FLATIADAPPFNGGYVVSKVLERPDPAALDDSLARRLWDESARLVRP
Ga0306924_117954312	3300032076	Soil	ETPVFLATVADPAPFHGGYVIRRTLAQPDPAALDSGLARRLWEESAKLVGI
Ga0307471_1005467371	3300032180	Hardwood Forest Soil	EGAKTSLFLATVSDPQPFHGGYVVGKTLARADPAALDGSVARRLWDESTRLTGL
Ga0306920_1008849632	3300032261	Soil	LFLATIADATPFNGGYVVGKVRERPDPAALDDRLARRLWDESGRLVGP
Ga0306920_1011846662	3300032261	Soil	SLFLATVPDPSPFHGGYVIGKSLVRPDPAALDRSLARRLWEESARLVGL
Ga0310914_100360684	3300033289	Soil	GAETTLFWATIADATPFNGGYVVSKVLERPDPAALDDSLARRLWDESARLVRP
Ga0310914_105993231	3300033289	Soil	KGAATTLFLATIADATPFNGGYVVGKVRERPDPAALDDSLARRLWDESARLVGP
Ga0310914_112698992	3300033289	Soil	TTLFLATIADATPFSGGYVVSKVLERPDPAALDDSLARRLWDESARLVGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090152

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences