NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F090449

Metagenome / Metatranscriptome Family F090449

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F090449
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 90 residues
Representative Sequence MTNFLHWRKMTWALVLWSGYVATWAVITGSGPAIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDWRVVNFHRNHRGTEPSA
Number of Associated Samples 96
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 80.56 %
% of genes near scaffold ends (potentially truncated) 31.48 %
% of genes from short scaffolds (< 2000 bps) 87.96 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (60.185 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil
(17.593 % of family members)
Environment Ontology (ENVO) Unclassified
(37.037 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(47.222 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 54.62%    β-sheet: 0.00%    Coil/Unstructured: 45.38%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF13439Glyco_transf_4 4.63
PF12876Cellulase-like 2.78
PF04041Glyco_hydro_130 1.85
PF13091PLDc_2 1.85
PF06966DUF1295 1.85
PF02449Glyco_hydro_42 0.93
PF02899Phage_int_SAM_1 0.93
PF00166Cpn10 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG2020Protein-S-isoprenylcysteine O-methyltransferase Ste14Posttranslational modification, protein turnover, chaperones [O] 1.85
COG2152Predicted glycosyl hydrolase, GH43/DUF377 familyCarbohydrate transport and metabolism [G] 1.85
COG3752Steroid 5-alpha reductase family enzymeGeneral function prediction only [R] 1.85
COG0234Co-chaperonin GroES (HSP10)Posttranslational modification, protein turnover, chaperones [O] 0.93
COG1874Beta-galactosidase GanACarbohydrate transport and metabolism [G] 0.93
COG4973Site-specific recombinase XerCReplication, recombination and repair [L] 0.93
COG4974Site-specific recombinase XerDReplication, recombination and repair [L] 0.93

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A60.19 %
All OrganismsrootAll Organisms39.81 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000956|JGI10216J12902_100248868All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium1870Open in IMG/M
3300000956|JGI10216J12902_111673886All Organisms → cellular organisms → Bacteria841Open in IMG/M
3300003993|Ga0055468_10063405Not Available971Open in IMG/M
3300003996|Ga0055467_10051013All Organisms → cellular organisms → Bacteria1069Open in IMG/M
3300003996|Ga0055467_10155831Not Available686Open in IMG/M
3300003998|Ga0055472_10092968Not Available835Open in IMG/M
3300004013|Ga0055465_10241727Not Available606Open in IMG/M
3300004114|Ga0062593_100362812Not Available1273Open in IMG/M
3300004463|Ga0063356_102274006Not Available827Open in IMG/M
3300004479|Ga0062595_101416699Not Available634Open in IMG/M
3300005330|Ga0070690_101320342Not Available578Open in IMG/M
3300005337|Ga0070682_100611385Not Available862Open in IMG/M
3300005340|Ga0070689_100141130All Organisms → cellular organisms → Bacteria1938Open in IMG/M
3300005354|Ga0070675_100859955All Organisms → cellular organisms → Bacteria → Proteobacteria830Open in IMG/M
3300005364|Ga0070673_100055421All Organisms → cellular organisms → Bacteria3123Open in IMG/M
3300005365|Ga0070688_101482825Not Available551Open in IMG/M
3300005441|Ga0070700_100077297All Organisms → cellular organisms → Bacteria2140Open in IMG/M
3300005459|Ga0068867_100165949All Organisms → cellular organisms → Bacteria1745Open in IMG/M
3300005718|Ga0068866_10519273All Organisms → cellular organisms → Bacteria791Open in IMG/M
3300005840|Ga0068870_11261668Not Available537Open in IMG/M
3300005842|Ga0068858_100090612All Organisms → cellular organisms → Bacteria2846Open in IMG/M
3300005843|Ga0068860_102764155Not Available509Open in IMG/M
3300006058|Ga0075432_10486886Not Available547Open in IMG/M
3300006358|Ga0068871_101278194Not Available690Open in IMG/M
3300006580|Ga0074049_11753323Not Available672Open in IMG/M
3300006581|Ga0074048_11885257Not Available840Open in IMG/M
3300006844|Ga0075428_102711269All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → unclassified Micromonospora → Micromonospora sp. ATCC 39149505Open in IMG/M
3300006876|Ga0079217_10206391Not Available1009Open in IMG/M
3300006881|Ga0068865_100386462Not Available1143Open in IMG/M
3300007004|Ga0079218_10175523Not Available1601Open in IMG/M
3300009098|Ga0105245_10168352Not Available2085Open in IMG/M
3300009148|Ga0105243_10033987All Organisms → cellular organisms → Bacteria3945Open in IMG/M
3300009148|Ga0105243_11152252Not Available786Open in IMG/M
3300009156|Ga0111538_11177436All Organisms → cellular organisms → Bacteria969Open in IMG/M
3300009177|Ga0105248_10621695All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1219Open in IMG/M
3300009609|Ga0105347_1333999Not Available643Open in IMG/M
3300010401|Ga0134121_12485343Not Available560Open in IMG/M
3300010403|Ga0134123_11633730Not Available693Open in IMG/M
3300010403|Ga0134123_13035172Not Available538Open in IMG/M
3300012943|Ga0164241_10489203All Organisms → cellular organisms → Bacteria885Open in IMG/M
3300012958|Ga0164299_10388306All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium892Open in IMG/M
3300012960|Ga0164301_10197644All Organisms → cellular organisms → Bacteria1279Open in IMG/M
3300012961|Ga0164302_10759040Not Available727Open in IMG/M
3300012984|Ga0164309_10661969Not Available824Open in IMG/M
3300013308|Ga0157375_11129152Not Available918Open in IMG/M
3300014259|Ga0075311_1037467Not Available915Open in IMG/M
3300014270|Ga0075325_1035925All Organisms → cellular organisms → Bacteria1002Open in IMG/M
3300014270|Ga0075325_1234125Not Available504Open in IMG/M
3300014272|Ga0075327_1078252All Organisms → cellular organisms → Bacteria989Open in IMG/M
3300014310|Ga0075331_1095826Not Available690Open in IMG/M
3300014325|Ga0163163_10857385All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium972Open in IMG/M
3300014326|Ga0157380_10980638Not Available877Open in IMG/M
3300015371|Ga0132258_10843963All Organisms → cellular organisms → Bacteria2311Open in IMG/M
3300015371|Ga0132258_11530088All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium1685Open in IMG/M
3300015372|Ga0132256_100090994All Organisms → cellular organisms → Bacteria2948Open in IMG/M
3300015373|Ga0132257_100058813All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium4307Open in IMG/M
3300015374|Ga0132255_100072450All Organisms → cellular organisms → Bacteria4584Open in IMG/M
3300017789|Ga0136617_11303718Not Available544Open in IMG/M
3300017965|Ga0190266_10925944Not Available575Open in IMG/M
3300018073|Ga0184624_10081991All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1359Open in IMG/M
3300018469|Ga0190270_10269803All Organisms → cellular organisms → Bacteria1494Open in IMG/M
3300018476|Ga0190274_10182235All Organisms → cellular organisms → Bacteria1821Open in IMG/M
3300018481|Ga0190271_10147031All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2268Open in IMG/M
3300018481|Ga0190271_10554319Not Available1265Open in IMG/M
3300025791|Ga0210115_1121835Not Available514Open in IMG/M
3300025792|Ga0210143_1011830All Organisms → cellular organisms → Bacteria1558Open in IMG/M
3300025795|Ga0210114_1034415Not Available1060Open in IMG/M
3300025796|Ga0210113_1035409Not Available1014Open in IMG/M
3300025908|Ga0207643_10595567Not Available711Open in IMG/M
3300025918|Ga0207662_10455184All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium876Open in IMG/M
3300025921|Ga0207652_10355215Not Available1323Open in IMG/M
3300025923|Ga0207681_10157419All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1709Open in IMG/M
3300025935|Ga0207709_10172351Not Available1520Open in IMG/M
3300025936|Ga0207670_11356602Not Available603Open in IMG/M
3300025937|Ga0207669_11207053Not Available641Open in IMG/M
3300025938|Ga0207704_10232600All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium1372Open in IMG/M
3300025938|Ga0207704_10314407All Organisms → cellular organisms → Bacteria1205Open in IMG/M
3300025941|Ga0207711_10746147Not Available912Open in IMG/M
3300025945|Ga0207679_10260533All Organisms → cellular organisms → Bacteria1479Open in IMG/M
3300026035|Ga0207703_11603329Not Available626Open in IMG/M
3300026051|Ga0208911_1034150Not Available515Open in IMG/M
3300026078|Ga0207702_12280096Not Available529Open in IMG/M
3300026089|Ga0207648_10066374All Organisms → cellular organisms → Bacteria3147Open in IMG/M
3300027907|Ga0207428_10407957All Organisms → cellular organisms → Bacteria994Open in IMG/M
3300028379|Ga0268266_11680995Not Available610Open in IMG/M
3300028592|Ga0247822_10820951Not Available759Open in IMG/M
3300028812|Ga0247825_10701923Not Available728Open in IMG/M
3300028889|Ga0247827_10278947Not Available965Open in IMG/M
3300030336|Ga0247826_10812766Not Available733Open in IMG/M
3300030592|Ga0247612_1209797Not Available506Open in IMG/M
3300030635|Ga0247627_10279537Not Available550Open in IMG/M
3300031379|Ga0307434_1104447Not Available811Open in IMG/M
3300031455|Ga0307505_10144367All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1085Open in IMG/M
3300031547|Ga0310887_10607814Not Available671Open in IMG/M
3300031847|Ga0310907_10110364All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium1204Open in IMG/M
3300031847|Ga0310907_10770394Not Available537Open in IMG/M
3300031854|Ga0310904_10266337All Organisms → cellular organisms → Bacteria → Proteobacteria1069Open in IMG/M
3300031858|Ga0310892_10162235All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1309Open in IMG/M
3300031943|Ga0310885_10586842Not Available616Open in IMG/M
3300032003|Ga0310897_10369404Not Available672Open in IMG/M
3300032012|Ga0310902_10804548Not Available641Open in IMG/M
3300032013|Ga0310906_10444497Not Available866Open in IMG/M
3300032013|Ga0310906_10669727Not Available722Open in IMG/M
3300032013|Ga0310906_11331232Not Available525Open in IMG/M
3300032075|Ga0310890_11404203Not Available573Open in IMG/M
3300032075|Ga0310890_11426520Not Available569Open in IMG/M
3300033550|Ga0247829_10015868All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium4616Open in IMG/M
3300033551|Ga0247830_10086105All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2175Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil17.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.19%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands8.33%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere7.41%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands5.56%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere4.63%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere3.70%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere3.70%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.70%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.78%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.78%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.78%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.85%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.85%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.85%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.85%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand0.93%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh0.93%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.93%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.93%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.93%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.93%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.93%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300003993Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2EnvironmentalOpen in IMG/M
3300003996Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2EnvironmentalOpen in IMG/M
3300003998Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2EnvironmentalOpen in IMG/M
3300004013Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005365Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006580Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006581Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006876Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200EnvironmentalOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009609Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012943Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)EnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014259Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1EnvironmentalOpen in IMG/M
3300014270Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1EnvironmentalOpen in IMG/M
3300014272Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1EnvironmentalOpen in IMG/M
3300014310Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1EnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017789Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)EnvironmentalOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300025791Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025792Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025795Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025796Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026051Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028812Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48EnvironmentalOpen in IMG/M
3300028889Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2EnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300030592Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab1 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030635Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Bnb4 (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031379Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-220EnvironmentalOpen in IMG/M
3300031455Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_SEnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300032003Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1EnvironmentalOpen in IMG/M
3300032012Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_10024886823300000956SoilMTNFLHWRKMTWALVLWSGYVVAWMAIIGSGVAMAVLWWLAGMIVFSSLWLATQPLFQQGRGLAGFFVRPGWTDWRVVNLHRTHRARGPRRDPR*
JGI10216J12902_11167388613300000956SoilMTNFLHWRKMTWALVLWSGYIAIWTVVASSGPAIVTLWWLVGLVVLGPLWFATQPLFQHGRGLEGLFIWPSRTHWRVVNLHRPHRGTEPRRDAG*
Ga0055468_1006340513300003993Natural And Restored WetlandsFLHWRKMTWALVFWSGYVPTWAVITGSGPAIVALWWLVGMTVFGALWLATQPLFQKGRGLTGVFVRPGWTDWRVVNLHRTHRATEPRRDAS*
Ga0055467_1005101323300003996Natural And Restored WetlandsMTNFLHWRKMTWALVLWSGYVPTWAVITGSGPAIVTLWWLVGMIVFGALWLATQPLFQKGRGLTGYFVRPGWTDWRVVNLHRTHRATEPRRDAS*
Ga0055467_1015583123300003996Natural And Restored WetlandsMTNFLHWRKTTWALVLWSGYIATWTLITGPGPAMVALWWVAGMILLGSLLFATQPLFQQGPGLSGLFVWPGRTDWRAGNLRRSHRATERRDAG*
Ga0055472_1009296833300003998Natural And Restored WetlandsMTNFLHWRKMTWALVFWSGYVPTWAVITGSGPAIVALWWLVGMTVFGALWLATQPLFQKGRGLTGVFVRPGWTDWRVVNLHRTHRATEPRRDAS*
Ga0055465_1024172723300004013Natural And Restored WetlandsMTNFLHWRKMTWALVLWSGYVPTWAVITGSGPAIVTLWWLVGMIVFGALWLATQPLFQKGRGLTGYFVRPGWTDWRVVNLHRTHRATEPR
Ga0062593_10036281213300004114SoilTNFLHWRKMTRALVLWSGYIVAWMMITGSGPVIVTVWWLAGFVVLGPLWFATQPLFQQARGLNGLFIWPSWTHWRVVNLHRTPRGTEPRRDAS*
Ga0063356_10227400623300004463Arabidopsis Thaliana RhizosphereMTNFLHWRKMTWACALWTGYVPTWAVITGSGPATVTLWWLVGMMMLGAVWLATQPLFQKGRGLTGFFVRPCWTNWRVVNLHRTYGATELRRDEG*
Ga0062595_10141669913300004479SoilMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDWRVVNFHRNHRDME
Ga0070690_10132034223300005330Switchgrass RhizosphereMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRERGLSGFLARPGWTDWRVVNFHRNHRGTEPSA*
Ga0070682_10061138513300005337Corn RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDWRVVNFHRNHRGTEPSA*
Ga0070689_10014113033300005340Switchgrass RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITHSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDWRVVNFHRNHRGTEPSA*
Ga0070675_10085995533300005354Miscanthus RhizosphereGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDWRVVNFHRNHRGTEPSA*
Ga0070673_10005542143300005364Switchgrass RhizosphereVTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLWGFLARPGWTDWRVVNFHRNHRGTEPSA*
Ga0070688_10148282513300005365Switchgrass RhizosphereMTNFLHWRKMTWALVLWSGYVATWAAITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDWRVVNFHRNHRGTEPSA*
Ga0070700_10007729723300005441Corn, Switchgrass And Miscanthus RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDWRVVNFHRNHRGTEHSA*
Ga0068867_10016594923300005459Miscanthus RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRERGLSGFLARPGWTDWRVVNFHRNHRGTEPSA*
Ga0068866_1051927323300005718Miscanthus RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGTLWLGTQPLFKRGRGLSGFLVRPGWTDWRVVNFHRNHRG
Ga0068870_1126166823300005840Miscanthus RhizosphereWRKMTWALVLWSGYVATWAVITHSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDWRVVNFHRNHRGTEPSA*
Ga0068858_10009061243300005842Switchgrass RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITDSGRTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPRWTDWRVVHFHRNHRGTEPSA*
Ga0068860_10276415513300005843Switchgrass RhizosphereTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDWRVVNFHRNHRGTEPSA*
Ga0075432_1048688613300006058Populus RhizosphereMILQMTNFLHWRKMTRALVLWSGYIVAWMMITGSGPVIVTVWWLAGFVVLGPLWFATQPLFQQARGLNGLFIWPSWTHWRVVNLHRTPRGTEPRRDAS*
Ga0068871_10127819413300006358Miscanthus RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPRWTDWRVVNFHRNHRGTEPSA*
Ga0074049_1175332313300006580SoilMTNFLHWRKMTWALVLWSGYVATWAVITDSGPAIVTLWWLAGMILFGALWLGTQPLFQRGRDLSGFLVRPGWTDWRVVNFHRNHRGTEPSA*
Ga0074048_1188525723300006581SoilMTNFLHWRKMTWALVLWSGYVTTWAVITDSGPAIVTLWWLAGMILFGALWLGTQPLFQRGRDLSGFLVRPGWTDWRVVNFHRNHRGTEPSA*
Ga0075428_10271126913300006844Populus RhizosphereMTKFLHWRKMTWAFGLWTVYIATWTALSGAGPAMVALWWLAGMALLGALWFATQPLFQKGRGSNGLFVWPGWTDWR
Ga0079217_1020639123300006876Agricultural SoilMTKFLHWRKMTWALVLWSGYVATWTVITGSGPAIVTLWWLVGMTVLGSLWLATQPLFQQGRGLNGFFVWPDRTDWRVVNLHRTHRASEPRRDAG*
Ga0068865_10038646243300006881Miscanthus RhizosphereMTNFLHWRKMTWALVLWSGYVVAWMAIIGSGVAMAVLWWLAGMIVFSSLWLATQPLFQQGRGLAGFFVRPGWTHWRVVDLHRTHRPRGPRRDPR*
Ga0079218_1017552333300007004Agricultural SoilMTKFLHWRKMTWALVLWSGYVATWTVITGSGPAIVTLWWLLGMTLLGSLWLATQPLFQQGRGLNGFFVWPDRTDWRVVNLHRTHRASEPRRDAG*
Ga0105245_1016835243300009098Miscanthus RhizosphereMTKFLHWRKMTWAFGLWTVYIATWTALSGAGPAMVALWWLAGMALLGALWFATQPLFQKGRGSNGLFVWPGWTDWRVVNLHRVHD
Ga0105243_1003398733300009148Miscanthus RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITGSGPAIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDWRVVNFHRNHRGTEPSA*
Ga0105243_1115225213300009148Miscanthus RhizosphereMTNFLPWRKMTWALVLWSGYVVAWMAIIGSGVAMAVLWWLAGTIVFSSLWLATQPLFQQGRGLAGFFVRPGRTNWRVVNLHRTHRARGP
Ga0111538_1117743613300009156Populus RhizosphereMILQMTNFLHWRKMTRALVLWSGYIVAWMMITGSGPVIVTVWWLAGFVVLGPLWFATQPLFQQARGLNGLFIWPSWTHWRVVNLH
Ga0105248_1062169523300009177Switchgrass RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITHSGPTIVTLWWLAGMILFGTLWLGTQPLFKRGRGLSGFLVRPGWTDWRVVNFHRNHRGTEPSA*
Ga0105347_133399913300009609SoilMTSFLHWRKMTWAIVLWSGYVPTWAMITGSGPAMVTLWWLVGMTVLGSLWLATQPLFQKGRGLAGVFVRPGWSNWRVVNLHRTHPARELRRDAS*
Ga0134121_1248534313300010401Terrestrial SoilMTNFLHWRKMTWALVLWSGYVATWAVITGSGPAIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLDRPRWTDWRVVNFHRNHRGTEPS
Ga0134123_1163373013300010403Terrestrial SoilMTNFLHWRKMTWALVLWSGYVVAWMAIIGSGVAMAILWWLAGMIVFSSLWLATQPLFQQGRGLTGFFVRPGWTHWRVVDLHRTHRPRGPRRDPR*
Ga0134123_1303517213300010403Terrestrial SoilMTKFLHWRKMTWAFGLWTVYIATWTALSGAGPAMVALWWLAGMALLGALWFATQPLFQKGRGSNGLFVWPGWTDWRVVNLHRVHDARDPRHGV
Ga0164241_1048920323300012943SoilMTNFFHWRKMTWVLVLWSGYIAVWTVIAGSGPVSVAVWWLAGYVLLGPLWFATQPLFQQGRGVRGLFVWPGWTHWRVVNLHRAHGDMEPRRDAG*
Ga0164299_1038830623300012958SoilMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDLRVINFHRNHRG
Ga0164301_1019764413300012960SoilMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGTLWLGTQPLFQRGRGLRGFLVRPGWTDWRVV
Ga0164302_1075904013300012961SoilMTNFLHWRKMTWALVLWSGYVATWAVITDSGPALVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDWRVVNFHRNHRGTEPSA*
Ga0164309_1066196913300012984SoilMTNFLHWRKMTWALVLWSGYVATWAVITDSGPAIVALWWLAGMILFGTLWLGTQPLFQRRRGLRGFLVRPGWTDWRVVNFHRNHRGTEPSA*
Ga0157375_1112915213300013308Miscanthus RhizosphereRSREPVRRFDRQLGCPVEKRRPAMTNFLHWRKMTWALVLWSGYVATWAVITHSGPTIVTLWWLAGMILFGTLWLGTQPLFKRGRGLSGFLVRPGWTDWRVVNFHRDHRGTEPPA*
Ga0075311_103746723300014259Natural And Restored WetlandsMTNFLHWRKMTWALVLWSGYVPTWAVITGSGPAIVTLWWLVGMTVFGALWLATQPLFQKGRGLTGYFVRPGWTDWRVVNLHRTHRATEPRRDAS*
Ga0075325_103592523300014270Natural And Restored WetlandsMTNFLHWRKMTWAFVLWSGYVPTWAVMTASGPAIVTLWWLVGMIVFGALWLATQPLFQKGRGLTGYFVRPGRTNWRVVNLHRTHRATEPRRDAS*
Ga0075325_123412513300014270Natural And Restored WetlandsQMTNFLHWRKMTWAFVLWSGYVPTWAVITGSGPAIVALWWLVGMTVFGALWLATQPLFQKGRGLTGVFVRPGWTDWRVVNLHRTHRATESRRDAS*
Ga0075327_107825233300014272Natural And Restored WetlandsMTNFLHWRKMTWALVLWSGYVPTWAMVTGSGPAMVTLWWLVGVIVLGSLWLATQPLFQKGRGMTGVFVRPDWTNWRVVNLHRTHR
Ga0075331_109582623300014310Natural And Restored WetlandsMTNFLHWRKMTWALVLWSGYVPTWAVITGSGPAIVALWWLVGMTVFGALWLATQPLFQKGRGLTGVFVRPGWTDWRVVNLHRTHGATEPLHDAS*
Ga0163163_1085738523300014325Switchgrass RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARTRWTDWRVVNFHRNHRGTEPSA*
Ga0157380_1098063813300014326Switchgrass RhizosphereMTWALVLWSGYVVAWMAIIGSGVAMAVLWWLAGMIVFSSLWLATQPLFQQGRGLAGFFVRPGWTHWRVVDLHRTHRPRGPRRDPR*
Ga0132258_1084396323300015371Arabidopsis RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPRWTDWRVVHFHRNHRGTEPSA*
Ga0132258_1153008823300015371Arabidopsis RhizosphereMTNFLHWRKMTWALVLWSGYVVAWMAIIGSGVAMAVLWWLAGMIVFSSLWLATQPLFQQGRGLTGFFVRPDRTHWRVVNLHRTHRVRGPRS*
Ga0132256_10009099433300015372Arabidopsis RhizosphereMTNFLHWRKMTWALVLWSGYVATWAAITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARRPGWTDWRVVNFHRNHRGTEPSA*
Ga0132257_10005881323300015373Arabidopsis RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARRPGWTDWRVVNFHRSHRGTEPSA*
Ga0132255_10007245053300015374Arabidopsis RhizosphereMTNFLHWRKMTWALVLWSGYVATWAAITDSGPTIVTLWWLAGMILFGALWLGTRPPFQRGRGLSGFLARRPGWTDWRVVNFHRSHRGTEPSA*
Ga0136617_1130371823300017789Polar Desert SandRQITCALMLWSGYVATWSVITGSGPEMVTLWWLVGMTVLGSLWLATQPLFQRGRGLDGFFVWPDRANVRVVKRRRNHRETEPRRDAD
Ga0190266_1092594413300017965SoilKMTWGVVLWCGYVPTWAVITGSGPAMVTLWWLVGMTVLGSLWLATQPLFQKGRGLTGIFVRPGRTNWRFINLHRTYPARELGDAG
Ga0184624_1008199123300018073Groundwater SedimentMTSFLHWRKMTWAVVLWSGYVPTWAVITGSGPAMVTLWWLVGMTALGSLWLATQPLFQKGRGLTGIFVRPGRTNWRFVNLHRTYPARELRRDAG
Ga0190270_1026980333300018469SoilMTSFLHWRKMTWAVVLWSGYVPTWAVITGSGPAMLTLWWLVGMTVLGSLWLATQPLFQKGRGLTGFFVRPGWTNWRVVNLHRTHPARELRRDAG
Ga0190274_1018223523300018476SoilMTGFLHWRKMTWALVLWSGYVPTWALLTDSGPAMVTLWWLVGVTVFCSLWLATQPLFQKGRGLTGFFVRPGWTNWRVVNLHRTYPARELRRDAG
Ga0190271_1014703143300018481SoilMTGFLHWRKMTWALVLWSGYVPTWAVITGSGPAMVTLWWLVGMTVLGSLWLATQPLFQKGRGLTGFFVRPGWTNWRVVNLHRTHPARELRRDAG
Ga0190271_1055431913300018481SoilMTNFLHWRKMTWALVLWSGYVATWTVITGSGPAIVTLWWLVGMTVLGSLWLATQPLFQQGRGLNGFFVWPDRTDWRVVNLHRTHRASEPRRDAS
Ga0210115_112183523300025791Natural And Restored WetlandsMTNFLHWRKMTWALVLWSGYVPTWAVITGSGPAIVTLWWLVGMIVFGALWLATQPLFQKGRGLTGYFVRPGWTDWRVVNLHRTHRATEPRRDAS
Ga0210143_101183023300025792Natural And Restored WetlandsMTNFLHWRKTTWALVLWSGYIATWTLITGPGPAMVALWWVAGMILLGSLLFATQPLFQQGPGLSGLFVWPGRTDWRAGNLRRSHRATERRDAG
Ga0210114_103441533300025795Natural And Restored WetlandsWRKMTWALVLWSGYVPTWAVITGSGPAIVTLWWLVGMIVFGALWLGTQPLFQKGRGLTGYFVRPGWTDWRVVNLHRTHRATEPRRDAS
Ga0210113_103540913300025796Natural And Restored WetlandsFLHWRKMTWALVFWSGYVPTWAVITGSGPAIVALWWLVGMTVFGALWLATQPLFQKGRGLTGVFVRPGWTDWRVVNLHRTHRATEPRRDAS
Ga0207643_1059556713300025908Miscanthus RhizosphereMTNVLRWRKTTWVLLLWGGYVPTWAVITGSGPAIVTLWWLAGMILFGALWLGTQPLLQRGRDLSGFLVRPGWTDWRVVNFHRNHRGTEPSA
Ga0207662_1045518423300025918Switchgrass RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALLLGTQPPFQRGRGLSGFLARPRWTDWRVVNFHRNHRGTEPSA
Ga0207652_1035521523300025921Corn RhizosphereMTKFLHWRKMTWALVLWSGYVATWAAITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPRWTDWRVVNFHRNHRGTEPSA
Ga0207681_1015741923300025923Switchgrass RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDWRVVNFHRNHRGTEPSA
Ga0207709_1017235133300025935Miscanthus RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITGSGPAIVTLWWLAGMILFGALWLGTQPPFQRGRGLWGFLARPGWTDWRVVNFHRNHRGTEPSA
Ga0207670_1135660223300025936Switchgrass RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITHSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDWRVVNFHRNHRGTEPSA
Ga0207669_1120705313300025937Miscanthus RhizosphereMTNFLHWRKMTWALVLWSGYVVAWMAIIGSGVVMAVLWWLAGMIVFSSLWLATQPLFQQGRGLAGFFVRPGRTHWRVLNLHRTHRAREPRRDPR
Ga0207704_1023260023300025938Miscanthus RhizosphereMTNFLHWRKMTWALVLWSGYVVAWMAIIGSGVAMAVLWWLAGMIVFSSLWLATQPLFQQGRGLAGFFVRPGWTHWRVVDLHRTHRPRGPRRDPR
Ga0207704_1031440723300025938Miscanthus RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGVSGFLARPGWTDWRVVNFHRNHRGTEPSA
Ga0207711_1074614723300025941Switchgrass RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITHSGPTIVTLWWLAGMILFGTLWLGTQPLFKRGRGLSGFLVRPGWTDWRVVNFHRNHRGTEPSA
Ga0207679_1026053323300025945Corn RhizosphereMTNFVHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDWRVVNFHRNHRGTEPSA
Ga0207703_1160332923300026035Switchgrass RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITDSGRTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPRWTDWRVVHFHRNHRGTEPSA
Ga0208911_103415013300026051Natural And Restored WetlandsMTNFLHWRKMTWAFVLWSGYVPTWAVITGSGPAIVALWWLVGMTVFGALWLATQPLFQKGRGLTGVFVRPGWTDWRVVNLHRTHRATEPRRDAS
Ga0207702_1228009623300026078Corn RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDWRVVNFHR
Ga0207648_1006637433300026089Miscanthus RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRERGLSGFLARPGWTDWRVVNFHRNHRGTEPSA
Ga0207428_1040795723300027907Populus RhizosphereMILQMTNFLHWRKMTRALVLWSGYIVAWMMITGSGPVIVTVWWLAGFVVLGPLWFATQPLFQQARGLNGLFIWPSWTHWRVVNLHRTPRGTEPRRDAS
Ga0268266_1168099513300028379Switchgrass RhizosphereMTNFLHWRKMTWALVLWSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPRWTDWRVVNFHRNHRGTEPSA
Ga0247822_1082095123300028592SoilVTNFLHWRKMTWALVLWSGYVVAWMAIIGSGVAMAVLWWLAGTIVFSSLWLATQPLFQQGRGLAGFFVRPGRTHWRVLNLHRTHRAREPRRDPR
Ga0247825_1070192323300028812SoilMTNFLHWRKMTWACALWTGYVPTWAVITGSGPATVTLWWLVGMMMLGAVWLATQPLFQKGRGLTGFFVRPCWTNWRVVNLHRTYGATELRRDEG
Ga0247827_1027894723300028889SoilVTNFLHWRKMTWALVLWSGYVVAWMAIIGSGVAMAVLWWLAGTIVFSSLWLATQPLFQQGRGLAGFFVRPGWTHWRVLNLHRTHRAREPRRDPR
Ga0247826_1081276633300030336SoilMTNFLHWRKMTWALVLWSGYVVAWMAIIGSGVAMAVLWWLAGTIVFSSLWLATQPLFQQGRGLAGFFVRPGRTHWRVLNLHRTHRAREPRRDPR
Ga0247612_120979713300030592SoilHWRKMTWVLVLWCGYVATWTVMTGSGPAIVTLWWLVGMIVLGSLWLATQPLFQQGRGLNGFFVWPGRTNWRVVNLHRTHRATESRRDAG
Ga0247627_1027953723300030635SoilVTNVLHWRKMTWVLVLWCGYVATWTVMTGSGPAIVTLWWLVGMIVLGSLWLATQPLFQQGRGLNGFFVWPGRPNWRVVNLHRTHRATESRRDAG
Ga0307434_110444723300031379Salt MarshMTNFLQWRKMTWALVLWSGYVAIWTVITGARPAMVALWWFAGMIVVGSVWLATQPLFQQGRILSGFFVWPGWGDWRVVNLHRTHRAAEPRRDAG
Ga0307505_1014436713300031455SoilCALVLWSGYVGTWAVITDPGPATVTLWWLAGTTFFGALWLGTQPLFKRGPGLYGFFVRPGWTTWRLRSHRLIEGRPDAR
Ga0310887_1060781413300031547SoilVTNFLHWRKMTWALVLWSGYVVAWMAIIGSGVAMAVLWWLAGTIVFSSLWLATQPLFQQGRGLAGFFVRPGRTHWRV
Ga0310907_1011036423300031847SoilMTNFLHWRKMTWALVLWSGYVVAWMAIIGSGVAMAVLWWLAGTIVFSSLWLATQPLFQQGRGLAGFFVRPGWTDWRVVNLHRTHRARGPRRDPR
Ga0310907_1077039423300031847SoilMTNFLHWRKMTWALVLWSGYVATWAAITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTD
Ga0310904_1026633733300031854SoilMTKFLHWRKMTWAFGLWTVYIATWTALSGAGPAMVALWWLAGMALLGALWFATQPLFQKGRGSNGLFVWPGWTDWRVVNLHRVHDARDPRH
Ga0310892_1016223513300031858SoilMTNFLHWRKMTWALVLWSGYVVAWMAIIGSGVAMAVLWWLAGMIVFSSLWLATQPLFQQGRGLAGFFVRPGWTHWRVVDLHRTHRARGPRRDPR
Ga0310885_1058684223300031943SoilMSNFLRWRKMTWAFVLWSGYIATWAVIAGSGPANVTLWWLVGMTVLGSLWLATQPAFQKGRGLTGFFVRPGWTNWRVVNLHRTHRAVEPRR
Ga0310897_1036940413300032003SoilMTNFLHWRKMTWALVLWSGYVVAWMAIIGSGVAMAVLWWLAGMIVFSSLWLATQPLFQQGRGLTGFFVRPDRTHWRVVNLHR
Ga0310902_1080454813300032012SoilSGYVATWAVITDSGPTIVTLWWLAGMILFGALWLGTQPPFQRGRGLSGFLARPGWTDWRVVNFHRNHRGTEPSA
Ga0310906_1044449723300032013SoilMTSFLHWRKMTWVLVLWVGYVVTWAVITGSGPAIVTLWWLVGMIVLGSLWLATQPLFQKGRGLTGFFVRPGRTNWRVVNLHRTHAATEPRPDAG
Ga0310906_1066972713300032013SoilMTWALVLWSGYVVAWMAIIGSGVAMAVLWWLAGMIVFSSLWLATQPLFQQGRGLAGFFVRPGRTHWRVVDLHRTHRPREPRRDPR
Ga0310906_1133123213300032013SoilMSNVLHWRKMTWALVLWSGYVPTWAVIAGSGPAMVTLWWLVGMTVLGSLWLATQPLFQKGRGLTGFFVRPGWTNWRVVNLHRTHRAVEPRRDAG
Ga0310890_1140420323300032075SoilMSNFLRWRKMTWAFVLWSGYIATWAVIAGSGPANVTLWWLVGMTVLGSLWLATQPAFQKGRGLTGFFVRPGWTNWRIVNLHRT
Ga0310890_1142652013300032075SoilMTNFLHWRKMTWALVLWSGYVVAWMAIIGSGVAMAVLWWLAGMIVFSSLWLATQPLFQQGRGLAGFFVRPGRTHWRVLNLHRTHRAREPRRDPR
Ga0247829_1001586813300033550SoilMSNFLRWRKMTWAFVLWSGYIATWAVIAGSGPANVTLWWLVGMTVLGSLWLATQPAFQKGRGLTGFFVRPGWTNWRVVNLHRTHRAVEPRRDAG
Ga0247830_1008610543300033551SoilMTWALVLWSGYVVAWMAIIGSGVAMAVLWWLAGTIVFSSLWLATQPLFQQGRGLAGFFVRPGRTHWRVLNLHRTHRAREPRRDPR

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.