NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F090465

Metagenome / Metatranscriptome Family F090465

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090465
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 40 residues
Representative Sequence MSSKITNQLVLDCIKQMREKTKERKFKQTVELQVALKDYDP
Number of Associated Samples 93
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Eukaryota
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 93.52 %
% of genes from short scaffolds (< 2000 bps) 100.00 %
Associated GOLD sequencing projects 90
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Eukaryota (98.148 % of family members)
NCBI Taxonomy ID 2759
Taxonomy All Organisms → cellular organisms → Eukaryota

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(35.185 % of family members)
Environment Ontology (ENVO) Unclassified
(42.593 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(66.667 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.
1B570J40625_1010939211
2Ga0007754_14029233
3Ga0007748_101115444
4Ga0007752_100409561
5Ga0007758_100334011
6Ga0075487_14422351
7Ga0075513_13045672
8Ga0075488_16255711
9Ga0099654_105517311
10Ga0114341_102430662
11Ga0104258_10420531
12Ga0115007_102635101
13Ga0115099_101260422
14Ga0115103_11692881
15Ga0115100_109394812
16Ga0115104_110152942
17Ga0129322_10818582
18Ga0129323_10868992
19Ga0138316_112738633
20Ga0138316_112953641
21Ga0138326_113678071
22Ga0129349_13447972
23Ga0157544_10970972
24Ga0157599_10823252
25Ga0138272_11002901
26Ga0138270_10539622
27Ga0138269_12966061
28Ga0129337_12218961
29Ga0129332_10678522
30Ga0129338_13114691
31Ga0170791_131272931
32Ga0170791_163025683
33Ga0188862_10113583
34Ga0192974_10326621
35Ga0192978_10371801
36Ga0192978_10460541
37Ga0193030_101252431
38Ga0193569_101712051
39Ga0193516_101022412
40Ga0193516_101710151
41Ga0192981_101625641
42Ga0192972_10431562
43Ga0188870_100784223
44Ga0188870_100932753
45Ga0206687_14005331
46Ga0206688_100389401
47Ga0206688_101013961
48Ga0206692_13275362
49Ga0206692_17070711
50Ga0206693_16181031
51Ga0206689_103677043
52Ga0194117_104931082
53Ga0063107_1000831
54Ga0063132_1053351
55Ga0063113_1186851
56Ga0063125_10073581
57Ga0063125_10150411
58Ga0063105_10013691
59Ga0063089_10220621
60Ga0063144_11528011
61Ga0063086_10178991
62Ga0063087_10456641
63Ga0063100_10012601
64Ga0063104_10011031
65Ga0063869_10347591
66Ga0063103_10044251
67Ga0063103_10966901
68Ga0063134_11768011
69Ga0063102_10145841
70Ga0063094_10008731
71Ga0063755_10822221
72Ga0228694_1153991
73Ga0228681_10164751
74Ga0228684_10559511
75Ga0247591_10717232
76Ga0247594_10410072
77Ga0247600_10335681
78Ga0247588_11004301
79Ga0247603_10345941
80Ga0247599_11235661
81Ga0247571_10668542
82Ga0247571_11585342
83Ga0247592_10752991
84Ga0247605_10789041
85Ga0209499_11443081
86Ga0247582_10865261
87Ga0256413_11727772
88Ga0304731_116719712
89Ga0307401_101743732
90Ga0307401_101823441
91Ga0307401_102516241
92Ga0307398_102767511
93Ga0307399_102581831
94Ga0307388_106883981
95Ga0307386_105028891
96Ga0307381_101163171
97Ga0307397_101790682
98Ga0307383_101838113
99Ga0307383_102811121
100Ga0307383_104151881
101Ga0307395_101700881
102Ga0307395_103718561
103Ga0314779_10124723
104Ga0314689_104698382
105Ga0314680_103432402
106Ga0314685_104994611
107Ga0314686_103658381
108Ga0314701_103282451
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 43.48%    β-sheet: 0.00%    Coil/Unstructured: 56.52%
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Variant

510152025303540MSSKITNQLVLDCIKQMREKTKERKFKQTVELQVALKDYDPSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
99.1%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Freshwater
Freshwater Lake
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater Lake
Freshwater
Lake
Sediment
Marine
Seawater
Seawater
Aqueous
Seawater
Marine
Ocean Water
6.5%3.7%35.2%4.6%6.5%8.3%13.9%12.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
B570J40625_10109392113300002835FreshwaterMTSKITNQLVLDSIKQMREKTKERKFKQTVELQVALKDYDP*
Ga0007754_140292333300004764Freshwater LakeHLIMASKINNALVLSCVKEMREKSKARKFQQTVELQVALKDYDP*
Ga0007748_1011154443300004769Freshwater LakeTHLIMASKINNALVLQCVKEMREKSKARKFQQTVELQVALKDYDP*
Ga0007752_1004095613300004789Freshwater LakeMASKINNALVLQCVKEMREKSKARKFQQTVELQVALKDYDP*
Ga0007758_1003340113300004790Freshwater LakeSKINNALVLQCVKEMREKSKARKFQQTVELQVALKDYDP*
Ga0075487_144223513300006356AqueousMSSKITNAQTLECIKQMKDNTKERKFKQTVELQVGIKDYDP*
Ga0075513_130456723300006379AqueousTNAQTLECIKQMKDNTKERKFKQTVELQVGIKDYDP*
Ga0075488_162557113300006397AqueousKVMSSKITNAQTLECIKQMKDNTKERKFKQTVELQVGIKDYDP*
Ga0099654_1055173113300006415LakeKTHLIMASKINNALVLSCVKEMREKSKARKFQQTVELQVALKDYDP*
Ga0114341_1024306623300008108Freshwater, PlanktonMSSKITNQLVLDCIKQMRENTKERKFKQTVELQVALKDYDP*
Ga0104258_104205313300008993Ocean WaterKITNALVLECIKEMKKGSKDRKFTQTVELQVGLKDYDP*
Ga0115007_1026351013300009441MarineMSSKITNALVLECITTMREGAKKRKFTQTVELQVGIKDYDP*
Ga0115099_1012604223300009543MarineSKITNAFTLECIDKMRKDTKERKFRQTVELQVAIKDYDP*
Ga0115103_116928813300009599MarineRAMTSKITNAHTLECIAKMREGTKARKFTQTAELQVAIKDYDP*
Ga0115100_1093948123300009608MarineLRAMTSKITNAHTLECIAKMREGTKARKFTQTAELQVAIKDYDP*
Ga0115104_1101529423300009677MarineAGVLDNIATLRETHKARKFKQTVELQVGIKDYDP*
Ga0129322_108185823300010306AqueousFRMSKITNALVLSCIKEMREKSKERKFMQTVELQVALKDYDP*
Ga0129323_108689923300010404AqueousKITNALVLSCIKEMREKSKERKFMQTVELQVALKDYDP*
Ga0138316_1127386333300010981MarineSKITNALVLECIDDMRKKTKERKFAQTVELQVALKDYDP*
Ga0138316_1129536413300010981MarineALVLECIKKMREGTKKRGFTQTVELQVALKDYDP*
Ga0138326_1136780713300010985MarineTNALVLECIDDMRKKTKERKFAQTVELQVALKDYDP*
Ga0129349_134479723300012518AqueousSKITNALVLDSIKEMREKSKKERKFQETVELQIALKDYDP*
Ga0157544_109709723300012713FreshwaterTNQLVLDSIKQMREKTKERKFKQTVELQVALKDYDP*
Ga0157599_108232523300012715FreshwaterKITNQLVLDCIKQMRENTKERKFKQTVELQVALKDYDP*
Ga0138272_110029013300012756Freshwater LakeHKVMSSKINNALVLNCIKEMRENSKARKFKQTVELQVSLKDYDP*
Ga0138270_105396223300012771Freshwater LakeKINNALVLNCIKEMRENSKARKFKQTVELQVSLKDYDP*
Ga0138269_129660613300012778Freshwater LakeLIMASKINNALVLSCVKEMREKSKARKFQQTVELQVALKDYDP*
Ga0129337_122189613300012968AqueousMQSKISNALVLQCIKEMREKSKKRKFTQTVELQIALKDYDP*
Ga0129332_106785223300012969AqueousFRMSKITNALVISCIKEMREKSKERKFMQTVELQVALKDYDP*
Ga0129338_131146913300012970AqueousITNQLVLDCIKQMREKTKERKFKQTVELQVALKDYDP*
Ga0170791_1312729313300013295FreshwaterKINNALVLQCVKEMREKSKARKFQQTVELQVALKDYDP*
Ga0170791_1630256833300013295FreshwaterMASKINNALVLSCVKEMREKSKARKFQQTVELQVALKDYDP*
Ga0188862_101135833300018622Freshwater LakeMSKITNAQTLECIKEMKDKTKERKFKQTVELQVGIKDYDP
Ga0192974_103266213300018739MarineMTTQKITNQLVLDCIGEMRGKTKERKFLQTVELQVALKDYDP
Ga0192978_103718013300018871MarineIQMTSKITNALVMECIKKMKEGTKKRNFTQTIELQVALKDYDP
Ga0192978_104605413300018871MarineSSKITNALVLECIADMKDGCKKRKFTQTVELQVGIKDYDP
Ga0193030_1012524313300018989MarineHGIFILNMSSKITNALVLDCIKEMREGAKKRKAGIVQTIELQVALKDYDP
Ga0193569_1017120513300019017MarineMTSKITNQLVLDCISEMKGKSKERKFMQTVELQVALKDYDP
Ga0193516_1010224123300019031MarineMSSKITAALLKECIEEMRQKTKDRKFKQTVELQVALKDYDP
Ga0193516_1017101513300019031MarineHGDLLFDIKLRMTSKISNDLVRECIADMREKTKERKFKQTVELQVALKDYDP
Ga0192981_1016256413300019048MarineMGINNLNRMSSKITNALVLECIADMKDGCKKRKFTQTVELQVGIKDYDP
Ga0192972_104315623300019108MarineQKITNQLVLDCIGEMRGKTKERKFLQTVELQVALKDYDP
Ga0188870_1007842233300019149Freshwater LakeKVMSKITNAQTLECIKEMKDKTKERKFKQTVELQVGIKDYDP
Ga0188870_1009327533300019149Freshwater LakeRMSSKITNAQILDAIKAIKEGKKKRGFTETFELQVGLKDYDP
Ga0206687_140053313300021169SeawaterAMSSKITNAFTLECIDKMRKDTKERKFRQTVELQVAIKDYDP
Ga0206688_1003894013300021345SeawaterSKITNALVLDCIKRMRDGTKKRGFTQTVELQVALKDYDP
Ga0206688_1010139613300021345SeawaterMSSKITNAFTLECIDKMRKDTKERKFRQTVELQVAIKDYDP
Ga0206692_132753623300021350SeawaterFFKAMSSKITNAFTLECIDKMRKDTKERKFRQTVELQVAIKDYDP
Ga0206692_170707113300021350SeawaterRMSKITNQLALDCIKTMKDKTKERKFKQTVELQVGIKDYDP
Ga0206693_161810313300021353SeawaterKITNALVLECIKKMKEGTKKRNFTQTVELQVALKDYDP
Ga0206689_1036770433300021359SeawaterSSKITNALVLDCIKRMRDGTKKRGFTQTVELQVALKDYDP
Ga0194117_1049310823300021424Freshwater LakeMSSKITNQLVLDCIKQMREKTKERKFKQTVELQVALKDYDP
Ga0063107_10008313300021869MarineMSSKITNALVLECITTMREGAKKRKFTQTVELQVGIKDYDP
Ga0063132_10533513300021872MarineSKITNALVLECIKQMREGAKKRKFTQTVELQVGIKDYDP
Ga0063113_11868513300021879MarineMSSKITNALVLECIKDMRAGTKDRKFAQTVELQVALKDYDP
Ga0063125_100735813300021885MarineSKITNAGVLDCIKNMREKTKARKFKQTVELQVGIKDYDP
Ga0063125_101504113300021885MarineQMSSKITNKIVLEAIENMKEATKKRKFTQTVELQVAIKDYDP
Ga0063105_100136913300021887MarineSSKITNAIVLECIKTMRDGAKKRKFTQTVELQVGIKDYDP
Ga0063089_102206213300021889MarineAMSSKITNALVLDCIKTMREGAKKRKFTQTVELQVGIKDYDP
Ga0063144_115280113300021899MarineKITAALLKECIEEMRTKTKDRKFKQTVELQVALKDYDP
Ga0063086_101789913300021902MarineSKITNTLVLECVKTMREGAKKRKFTQTVELQVGIKDYDP
Ga0063087_104566413300021906MarineSKITNALVLDCIKTMREGAKKRKFTQTVELQVGIKDYDP
Ga0063100_100126013300021910MarineDMSSKITNAIVLECIKTMRDGAKKRKFTQTVELQVGIKDYDP
Ga0063104_100110313300021913MarineKDMSSKITNAIVLECIKTMRDGAKKRKFTQTVELQVGIKDYDP
Ga0063869_103475913300021922MarineKITNALVLESIKDMREGSKVRKFTQTVELQVALKDYDP
Ga0063103_100442513300021927MarineMSSKITNQLVLDCIKTMREGAKKRKFTQTVELQVGIKDYDP
Ga0063103_109669013300021927MarineSSKISNNLVLECITQMREGTKKRNFTQTVELQVAIKDYDP
Ga0063134_117680113300021928MarineNALVLDCIKEMREGAKKRKAGIVQTIELQVALKDYDP
Ga0063102_101458413300021941MarineSSKITNQLVLDCIKTMREGAKKRKFTQTVELQVGIKDYDP
Ga0063094_100087313300021943MarineSSKITNALVLECITTMREGAKKRKFTQTVELQVGIKDYDP
Ga0063755_108222213300021954MarineITNALVLDCIKTMREGAKKRKFTQTVELQVGIKDYDP
Ga0228694_11539913300023567SeawaterMSSKITNTGVVENIKNMREKSKARKFKQTVELQVGIKDYDP
Ga0228681_101647513300023683SeawaterKMSKISNALVLECIADMREKSKERKFKQTVELQVSLKDYDP
Ga0228684_105595113300023704SeawaterNALVLDCIKEMREKSKKERKFKETVELQIALKDYDP
Ga0247591_107172323300026434SeawaterKITNALVLDCIKEMREKSKKERKFKETVELQIALKDYDP
Ga0247594_104100723300026448SeawaterSSKITNTGVVENIKNMREKSKARKFKQTVELQVGIKDYDP
Ga0247600_103356813300026461SeawaterISNALVLECIADMREKSKERKFKQTVELQVSLKDYDP
Ga0247588_110043013300026465SeawaterTNSHTLECIAQMRERTKERKFRQTVELQVAIKDYDP
Ga0247603_103459413300026468SeawaterKISNALVLECIADMREKSKERKFKQTVELQVSLKDYDP
Ga0247599_112356613300026470SeawaterITNALVLDCIKEMREKSKKERKFKETVELQIALKDYDP
Ga0247571_106685423300026495SeawaterMSSKITNSHTLECIAQMRERTKERKFRQTVELQVAIKDYDP
Ga0247571_115853423300026495SeawaterDKMSKISNALVLECIADMREKSKERKFKQTVELQVSLKDYDP
Ga0247592_107529913300026500SeawaterMSSKIANSHTLECIAQMRERTKERKFRQTVELQVAIKDYDP
Ga0247605_107890413300026503SeawaterSMSSKITNSHTLECIAQMRERTKERKFRQTVELQVAIKDYDP
Ga0209499_114430813300027712Freshwater LakeMASKINNALVLSCVKEMREKSKARKFQQTVELQVALKDYDP
Ga0247582_108652613300028109SeawaterESMSSKITNSHTLECIAQMRERTKERKFRQTVELQVAIKDYDP
Ga0256413_117277723300028282SeawaterSSKITNTHTLQCIEAMRKKTKERKFKQTIELQVGIKDYDP
Ga0304731_1167197123300028575MarineSKITNALVLECIDDMRKKTKERKFAQTVELQVALKDYDP
Ga0307401_1017437323300030670MarineTSKITNALVMECIKKMKEGTKKRNFTQTIELQVALKDYDP
Ga0307401_1018234413300030670MarineNMTTQKITNQLVLDCIGEMRGKTKERKFLQTVELQVALKDYDP
Ga0307401_1025162413300030670MarineKITNALVLECIADMKDGCKKRKFTQTVELQVGIKDYDP
Ga0307398_1027675113300030699MarineGMSSKITNALVLECIKKMKEGTKKRNFTQTVELQVALKDYDP
Ga0307399_1025818313300030702MarineRMSSKITNALVLECIADMKDGCKKRKFTQTVELQVGIKDYDP
Ga0307388_1068839813300031522MarineTQKITNQLVLDCIGEMRGKTKERKFLQTVELQVALKDYDP
Ga0307386_1050288913300031710MarineVMSSKITNTQTLDCITAMRKKTKERKFKQTVELQVGIKDYDP
Ga0307381_1011631713300031725MarineKITNQLVLDSIADMRGKTKERKFLQTVELQVALKDYDP
Ga0307397_1017906823300031734MarineFCFKIQMTSKITNALVMECIKKMKEGTKKRNFTQTIELQVALKDYDP
Ga0307383_1018381133300031739MarineTTQKITNQLVLDSIADMRGKTKERKFLQTVELQVALKDYDP
Ga0307383_1028111213300031739MarineKITNTQTLDCITAMRKKTKERKFKQTVELQVGIKDYDP
Ga0307383_1041518813300031739MarineMSSKITNKIVLEAIESMKEATKKRKFTQTVELQVAIKDYDP
Ga0307395_1017008813300031742MarineMTSKITNALVMECIKKMKEGTKKRNFTQTIELQVALKDYDP
Ga0307395_1037185613300031742MarineSKITNALVLECIADMKDGCKKRKFTQTVELQVGIKDYDP
Ga0314779_101247233300032150SedimentATSSKITNAQVLECIKEMREGTKARKFQQTVELQISLKDYDP
Ga0314689_1046983823300032518SeawaterSKITNSQTLECIKEMKDKTKERKFKQTVELQVGIKDYDP
Ga0314680_1034324023300032521SeawaterVMSKITNSQTLECIKEMKDKTKERKFKQTVELQVGIKDYDP
Ga0314685_1049946113300032651SeawaterKVMSKITNSQTLECIKEMKDKTKERKFKQTVELQVGIKDYDP
Ga0314686_1036583813300032714SeawaterNSQTLECIKEMKDKTKERKFKQTVELQVGIKDYDP
Ga0314701_1032824513300032746SeawaterMSKITNSQTLECIKEMKDKTKERKFKQTVELQVGIKDYDP


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