Metagenome / Metatranscriptome Family F090642

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090642
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	108 residues
Representative Sequence	QDPVALRMFGLILMATSVTRTAIWVYATRSPSVVHEPIDRASFWSGLALSVFPLVIYVAAFAIAGVSAGASLAVYASAPVLYFITITLLRRLAPRGSAERQFT
Number of Associated Samples	92
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	2.86 %
% of genes near scaffold ends (potentially truncated)	87.04 %
% of genes from short scaffolds (< 2000 bps)	91.67 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.481 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.037 % of family members)
Environment Ontology (ENVO)	Unclassified (49.074 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (40.741 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 79.61% β-sheet: 0.00% Coil/Unstructured: 20.39%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF07883	Cupin_2	3.70
PF00582	Usp	1.85
PF12710	HAD	1.85
PF12900	Pyridox_ox_2	0.93
PF01580	FtsK_SpoIIIE	0.93
PF00501	AMP-binding	0.93
PF04075	F420H2_quin_red	0.93
PF11139	SfLAP	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	Cell cycle control, cell division, chromosome partitioning [D]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.48 %
All Organisms	root	All Organisms	43.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.48 %
cellular organisms	root	All Organisms → cellular organisms	43.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.48 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.48 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	43.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.48 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	43.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.48 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	32.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.48 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.85 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.93 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.93 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.48 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.93 %
Gordoniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.93 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.48 %
Nonomuraea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea	0.93 %
Gordonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Gordonia	0.93 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.48 %
Nonomuraea zeae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea zeae	0.93 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.93 %
Gordonia rhizosphera	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Gordonia → Gordonia rhizosphera	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005335\|Ga0070666_10481778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	898	Open in IMG/M
3300005456\|Ga0070678_101093826	Not Available	736	Open in IMG/M
3300005471\|Ga0070698_101863521	Not Available	554	Open in IMG/M
3300005615\|Ga0070702_101009796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Gordonia → Gordonia rhizosphera	659	Open in IMG/M
3300005921\|Ga0070766_10639372	Not Available	717	Open in IMG/M
3300006176\|Ga0070765_101396323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	660	Open in IMG/M
3300006871\|Ga0075434_100551384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1172	Open in IMG/M
3300009672\|Ga0116215_1108114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1245	Open in IMG/M
3300010046\|Ga0126384_10378664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1188	Open in IMG/M
3300010048\|Ga0126373_10806647	Not Available	1000	Open in IMG/M
3300010048\|Ga0126373_11207817	Not Available	822	Open in IMG/M
3300010359\|Ga0126376_10834020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	904	Open in IMG/M
3300010376\|Ga0126381_100527714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1669	Open in IMG/M
3300010397\|Ga0134124_11408419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	723	Open in IMG/M
3300010398\|Ga0126383_12704151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	579	Open in IMG/M
3300012971\|Ga0126369_12588024	Not Available	592	Open in IMG/M
3300013307\|Ga0157372_10954263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	994	Open in IMG/M
3300013308\|Ga0157375_10369637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea zeae	1600	Open in IMG/M
3300014969\|Ga0157376_11941660	Not Available	626	Open in IMG/M
3300016270\|Ga0182036_10289188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1242	Open in IMG/M
3300016270\|Ga0182036_11553123	Not Available	556	Open in IMG/M
3300016341\|Ga0182035_10875946	Not Available	791	Open in IMG/M
3300016371\|Ga0182034_10909490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	757	Open in IMG/M
3300016371\|Ga0182034_10996317	Not Available	723	Open in IMG/M
3300016422\|Ga0182039_11364019	Not Available	643	Open in IMG/M
3300016422\|Ga0182039_11928300	Not Available	543	Open in IMG/M
3300017821\|Ga0187812_1029507	Not Available	1875	Open in IMG/M
3300017821\|Ga0187812_1032372	Not Available	1787	Open in IMG/M
3300017924\|Ga0187820_1052106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1108	Open in IMG/M
3300017928\|Ga0187806_1228328	Not Available	639	Open in IMG/M
3300017932\|Ga0187814_10359115	Not Available	563	Open in IMG/M
3300017933\|Ga0187801_10466705	Not Available	531	Open in IMG/M
3300017933\|Ga0187801_10485884	Not Available	521	Open in IMG/M
3300017937\|Ga0187809_10099293	Not Available	975	Open in IMG/M
3300017937\|Ga0187809_10397006	Not Available	525	Open in IMG/M
3300017937\|Ga0187809_10407073	Not Available	519	Open in IMG/M
3300017939\|Ga0187775_10506335	Not Available	516	Open in IMG/M
3300017942\|Ga0187808_10274721	Not Available	756	Open in IMG/M
3300017943\|Ga0187819_10645071	Not Available	599	Open in IMG/M
3300017948\|Ga0187847_10241313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	984	Open in IMG/M
3300017955\|Ga0187817_10065786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2250	Open in IMG/M
3300017955\|Ga0187817_10530956	Not Available	751	Open in IMG/M
3300017973\|Ga0187780_10611386	Not Available	783	Open in IMG/M
3300017993\|Ga0187823_10103362	Not Available	855	Open in IMG/M
3300017999\|Ga0187767_10178638	Not Available	656	Open in IMG/M
3300018001\|Ga0187815_10469733	Not Available	538	Open in IMG/M
3300018044\|Ga0187890_10219074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1076	Open in IMG/M
3300018060\|Ga0187765_11346180	Not Available	508	Open in IMG/M
3300018086\|Ga0187769_10451092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	969	Open in IMG/M
3300021181\|Ga0210388_10706815	Not Available	877	Open in IMG/M
3300025903\|Ga0207680_10898635	Not Available	635	Open in IMG/M
3300026489\|Ga0257160_1106507	Not Available	506	Open in IMG/M
3300027889\|Ga0209380_10812423	Not Available	529	Open in IMG/M
3300030706\|Ga0310039_10216214	Not Available	749	Open in IMG/M
3300030763\|Ga0265763_1028196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	626	Open in IMG/M
3300031545\|Ga0318541_10492949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	686	Open in IMG/M
3300031546\|Ga0318538_10638986	Not Available	577	Open in IMG/M
3300031546\|Ga0318538_10645464	Not Available	574	Open in IMG/M
3300031549\|Ga0318571_10101339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	943	Open in IMG/M
3300031561\|Ga0318528_10625638	Not Available	577	Open in IMG/M
3300031564\|Ga0318573_10675164	Not Available	555	Open in IMG/M
3300031682\|Ga0318560_10022132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2922	Open in IMG/M
3300031719\|Ga0306917_10621893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	849	Open in IMG/M
3300031723\|Ga0318493_10085930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1558	Open in IMG/M
3300031748\|Ga0318492_10103010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1404	Open in IMG/M
3300031751\|Ga0318494_10252980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1011	Open in IMG/M
3300031751\|Ga0318494_10669681	Not Available	607	Open in IMG/M
3300031751\|Ga0318494_10708579	Not Available	589	Open in IMG/M
3300031763\|Ga0318537_10323542	Not Available	570	Open in IMG/M
3300031764\|Ga0318535_10308614	Not Available	708	Open in IMG/M
3300031765\|Ga0318554_10325476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	874	Open in IMG/M
3300031768\|Ga0318509_10287564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	919	Open in IMG/M
3300031769\|Ga0318526_10128122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1026	Open in IMG/M
3300031771\|Ga0318546_10254176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1210	Open in IMG/M
3300031771\|Ga0318546_11047316	Not Available	574	Open in IMG/M
3300031779\|Ga0318566_10608954	Not Available	531	Open in IMG/M
3300031781\|Ga0318547_11009767	Not Available	520	Open in IMG/M
3300031795\|Ga0318557_10051076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1739	Open in IMG/M
3300031799\|Ga0318565_10003166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5961	Open in IMG/M
3300031819\|Ga0318568_10056369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2280	Open in IMG/M
3300031823\|Ga0307478_10963219	Not Available	713	Open in IMG/M
3300031831\|Ga0318564_10526252	Not Available	512	Open in IMG/M
3300031833\|Ga0310917_10479138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	847	Open in IMG/M
3300031833\|Ga0310917_11049582	Not Available	545	Open in IMG/M
3300031846\|Ga0318512_10126115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1221	Open in IMG/M
3300031846\|Ga0318512_10189101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1004	Open in IMG/M
3300031879\|Ga0306919_10960824	Not Available	654	Open in IMG/M
3300031890\|Ga0306925_10407982	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1456	Open in IMG/M
3300031893\|Ga0318536_10288185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	833	Open in IMG/M
3300031897\|Ga0318520_11068331	Not Available	511	Open in IMG/M
3300031910\|Ga0306923_11522101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	699	Open in IMG/M
3300031912\|Ga0306921_10724045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1142	Open in IMG/M
3300031946\|Ga0310910_11202776	Not Available	588	Open in IMG/M
3300031947\|Ga0310909_10985853	Not Available	689	Open in IMG/M
3300032001\|Ga0306922_11932996	Not Available	577	Open in IMG/M
3300032009\|Ga0318563_10612049	Not Available	587	Open in IMG/M
3300032063\|Ga0318504_10095354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1326	Open in IMG/M
3300032094\|Ga0318540_10420146	Not Available	646	Open in IMG/M
3300032160\|Ga0311301_11910819	Not Available	699	Open in IMG/M
3300032261\|Ga0306920_103440106	Not Available	587	Open in IMG/M
3300032770\|Ga0335085_10162902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2780	Open in IMG/M
3300032782\|Ga0335082_10076516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3375	Open in IMG/M
3300032783\|Ga0335079_10820216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	962	Open in IMG/M
3300032805\|Ga0335078_11030009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	971	Open in IMG/M
3300033290\|Ga0318519_10159554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1265	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.52%
Host-Associated	Host-Associated	6.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.85%
Aquatic	Environmental → Aquatic	16.67%
Plants	Host-Associated → Plants	6.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.85%
Freshwater	Environmental → Aquatic → Freshwater	16.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.56%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.33%
Loam	Environmental → Terrestrial → Soil → Loam	4.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.85%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	51.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	14.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.04%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.04%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	14.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.48%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.63%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.78%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300030763	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070666_104817782	3300005335	Switchgrass Rhizosphere	FGLILMGTSVARTVIWAYAAQKPALVHEPLDRASFWSGLALSVFPVVVYVVAFAIARVSPQASLAVYASAPVLYFIAITLLRWLAPRGSAERQFT*
Ga0070678_1010938261	3300005456	Miscanthus Rhizosphere	RLFGLILMGTSVARTVIWAYAAQKPALVHEPLDRASFWSGLALSVFPVVVYVVAFAIARVSPQASLAVYASAPVLYFIAITLLRWLAPRGSAERQFT*
Ga0070698_1018635211	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	RYSEDPLALRLFGLILMATSVTRTAIWAYATQRRSLVHEPLDRASIWSGLALSVFPLLVYIAAFAIAAVSPQASLAVYASAPVLYFITITLLRWLAPRGSAERQFT*
Ga0070702_1010097961	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	RLFGLILIGTSVARTVIWAYAAQKPTLVHEPLDRASFWSGLALSVFPVVVYVVAFAIARVSPQASLAVYASAPVLYFIAITLLRWLAPRGSAERQFT*
Ga0070766_106393722	3300005921	Soil	GSALLSRYYEDPLALRLFGLILIGMSVARTAIWAYATLRPSLIHEPLDRASIWSGLALSVFPVAVYIIAFAIAGVSSQASLAVYASGPVLYFIAITLLRLLAPRGSAERQFT*
Ga0070765_1013963231	3300006176	Soil	LIGMSVARTAISAYATLRPSLIHEPLDRASIWSGLALSVFPVAVYIIAFAIAGVSSQASLAVYASGPVLYFIAITLLRLLAPRGSAERQFT*
Ga0075434_1005513841	3300006871	Populus Rhizosphere	LLTLFAVCLLPFGSALLSRYYEDPLALRLFGLILMGTSVARTVIWAYAAQKPALVHEPLDRASFWSGLALSVFPVVVYVVAFAIARVSPQASLAVYASAPVLYFIAITLLRWLAPRGSAERQFT*
Ga0116215_11081142	3300009672	Peatlands Soil	MFTNLLTLFTVCLLPFGSSLLSRHYEDPLALRLFGLILMGTSLARTVIWVYAAQKPSLVHEPLDRASFWSGLALSVFPVVVYVVAFVIARVSPQASLAVYASAPVLYFIAITLLRWLAPRGSAERQFT*
Ga0126384_103786643	3300010046	Tropical Forest Soil	ALLSRYHQDPLALRMFGLILMATSLTRTAIWVYATRRPSVVHEPIDRASFWSGLALSVFPLVIYVAAFAIAGVSTGASLAIYASAPVLYFITITLLRWLAPQGSEERQFT*
Ga0126373_108066471	3300010048	Tropical Forest Soil	LLTLFAACLLPFGSALLSRYHQDPLALRMFGLILIATSVTRTAIWVYATRSPSVVHEPIDRASYWSGLALSVFPLVIYVVAFAIAGVSTGASLAVYASAPVLYFITITVLRRLAPRGSAERQFT*
Ga0126373_112078172	3300010048	Tropical Forest Soil	ACLLPFGSALLSRYHQDPLALRMFGLILMATSLARTAIWVYATRRPSVVHEPIDRASFWSGLALSGFPLAIYVVAFAVAGVSTGASLAVYASAPVLYFIWITLLRWLAPRGSAERQFT*
Ga0126376_108340202	3300010359	Tropical Forest Soil	AACLLPFGSALLSRYHQDPLALRMFGLILMATSLTRTAIWVYATRRPSVVHDPIDRASYWSGLALSVFPLVIYAAAFAIAGASTGASLAVYASAPVLYFITITLLRWLGPQGSEERQFT*
Ga0126381_1005277141	3300010376	Tropical Forest Soil	HQDPLALRMFGLILMATSVTRTAIWVYATRRPSVVHEPIDRASYWSGLALSVFPLVIYVVAFAIAGVSTGASLAVYASAPVLYFITISLLRWLAPQGSEERQFT*
Ga0134124_114084192	3300010397	Terrestrial Soil	LALRLFGLILMGTSVARTVIWAYAAQKPALVHEPLDRASFWSGLALSVFPVVVYVVAFAIARVSPQASLAVYASAPVLYFIAITLLRWLAPRGSAERQFT*
Ga0126383_127041512	3300010398	Tropical Forest Soil	TSVARTAMWAYATHRPELIHEPLDRASIRSGLALSAFPVVVYLIAFAVARVSPQASLAVYASGPVLYFIAITLLHWLAPRGSAERQFT*
Ga0126369_125880241	3300012971	Tropical Forest Soil	LSRYYQDPLALRMFGLILMATSVTRTAIWVYATRRPSVVHDPIDRASYWSGLALSVFPQVIYAVAFAIAGVSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT*
Ga0157372_109542631	3300013307	Corn Rhizosphere	FGSALLSRYYEDPLALRLFGLILMGTSVARTVIWAYAAQKPTLVHEPLDRASFWSGLALSVFPVVVYVVAFAIARVSPQASLAVYASAPVLYFIAITLLRWLAPRGSAERQFT*
Ga0157375_103696372	3300013308	Miscanthus Rhizosphere	FAVCLLPFGSALLSRYYEDPLALRLFGLILIGTSVARTVIWAYAAQKPTLVHEPLDRASFWSGLALSVFPVVVYVVAFAIARVSPQASLAVYASAPVLYFIAITLLRWLAPRGSAERQFT
Ga0157376_119416601	3300014969	Miscanthus Rhizosphere	LPFGSALLSRYYEDPLALRLFGLILIGTSVARTVIWAYAAQKPTLVHEPLDRASFWSGLALSVFPVVVYVVAFAIARVSPQASLAVYASAPVLYFIAITLLRWLAPRGSAERQFT*
Ga0182036_102891883	3300016270	Soil	FAACLLPFGSALLSRYHQDPLALRMLGLILMATSVTRTAIWVYATRRPSVVHDAIDRASYWSGLALSVFPLVIYAAAFAIAGVSTGASLAVYASAPVLYFITITLLRRLAPRGSAERQFT
Ga0182036_115531231	3300016270	Soil	PFGSALLSRYHQDPVALRMFGLILMATSLTRTAIWVYATRRPSVVHEPVDRASFWSGLALSVFPLAIYAAAFAVAGTSAGASLAVYASAPVLYFITITLLRRLAPRGSAERQFT
Ga0182035_108759461	3300016341	Soil	EDPLALRMFGLILIGTSVARTIIWAYATQRPELIHEPLDRASIRSGLALSVFPVVVYLIAFAVAGVSPQASLAVYASGPVLYFIAITLLHWLAPHGSAERQFT
Ga0182034_104975041	3300016371	Soil	RTAIWVYATRRPSVVHDAIDRASYWSGLALSVFPLVIYAAAFAIAGTSTGASLAVYASAPVLYFLTITLLRWLGPQGSEERQFT
Ga0182034_109094902	3300016371	Soil	CLLPFGAGLLSRYHQDPLALRMFGLILMATSLTRTIIWLYATLRPSVVHDPIDRASFWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0182034_109963172	3300016371	Soil	WLNLLTLFAACLLPFGSALLSSYHTDPLALRMFGLILMATSLTRTAIWAYALRRPSVVHDPIDRASFWSGLALSAFPLVIYAAAFAIAGVSTGASLAVYAAAPVLYFITITLLRRLAPRGSAERQFT
Ga0182039_113640192	3300016422	Soil	HRDLFTLISDTDRGIIWLNLLTLFAACLLPFGSALLSRYHDQDPLALRMFGLILMATSVTRTAIWAYALRRPSVVHEPIDRASFWSGLALSAFPLVIYAVAFAIAGVSTGASLAVYAAAPVLYFITITLLRRLAPRGSEERQFT
Ga0182039_119283002	3300016422	Soil	RMFGLILMATSLTRTAIWVYATRRPSVVHDPIDRASYWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0187812_10295073	3300017821	Freshwater Sediment	ALLSRYYEDPLALRLFGLILMATSVTRTAIWAYATQRQSLVHEPLDRASIRSGLALSVFPLLVYIAAFAIAAVSPRASLAVYASAPVLYFITITLLRWLAPRGSAERQFT
Ga0187812_10323721	3300017821	Freshwater Sediment	VCLLPFGSALLSRYYEDPLALRLFGLILMATSVTRTAIWAYATQRPSLVHEPLDRASIRSGLALSVFPLLVYLAAFAIAAASPPASLAVYASAPVLYFIAITLLRWLAPRGSAERQFT
Ga0187820_10521062	3300017924	Freshwater Sediment	YYEDPLALRLFGLILMATSVTRTAIWAYATQRPSLVHEPLDRASIRSGLALSVFPVLVYIAAFAIAAVSPRASLAVYASAPVLYFITVTLLRWLAPRGSAERQFT
Ga0187806_12283281	3300017928	Freshwater Sediment	ALLSRYYEDPLALRLFGLILIGTSIARTAIWAYATQRPSLIHEPLDRASIRSGLALSVFPVAVYIIAFAIAGVSSQASLAVYASGPVLYFIAITLLHLVAPRGSAERQFT
Ga0187814_103591151	3300017932	Freshwater Sediment	LFAVCLLPFGSALLSRYYEDPLALRLFGLILIGTSIARTAIWAYATQRPSLIHEPLDRASIRSGLALSVFPVAVYIIAFAIAGVSSQASLAVYASGPVLYFIAITLLHLVAPRGSAERQF
Ga0187801_104667051	3300017933	Freshwater Sediment	LSRCYEDPLALRLFGLILMATSVTRTAIWAYATQRPSLVHEPLDRASIRSGLALSVFPLLVYLAAFAIAAASPPASLAVYASAPILYFIAITLLRWLAPRGSAERQFT
Ga0187801_104858841	3300017933	Freshwater Sediment	NLLTLFAVCLLPFGSALLSRYYEDPLALRIFGLILMGTSITRTAIWAYATQRPSLIHEPLDRASIRSGLALSVFPVVIYIIAFVIAGVSPQASLAVYASGPVLYFIAITLLHLVAPRGSAERQFT
Ga0187809_100992932	3300017937	Freshwater Sediment	SALLSRYYEDPLALRLFGLILMATSVTRTAIWAYATQRQSLVHEPLDRASIRSGLALSVFPLLVYIAAFAIAAVSPRASLAVYASAPVLYFITITLLRWLAPRGSAERQFT
Ga0187809_103970062	3300017937	Freshwater Sediment	LPFGSALLSRYYEDPLALRLFGLILMATSVTRTAIWAYATQRPSLVHEPLDRASIRSGLALSVFPLLVYLAAFAIAAASPPASLAVYASAPVLYFIAITLLRWLAPRGSAERQFT
Ga0187809_104070731	3300017937	Freshwater Sediment	YEDPLALRVFGLVLMGTAVARTLIWAYATHRPSLIHEPLDRASIRSGLALSVFPVAVYVVAFVIAGVSPRASLAVYASGPVLYFIAITLLHVLAPRGSAERQFT
Ga0187775_105063352	3300017939	Tropical Peatland	LRMFGLILMATSLTRTAIWIYATRSPSVVHEPIDRASFWSGLALSVFPLVIYAAAFAIAGVSTGASLAVYASAPVLYFITITLLRRLAPRGSAERQFT
Ga0187808_102747213	3300017942	Freshwater Sediment	FGSALLSRYYEDPLALRLFGLILMATSVTRTAIWAYATQRPSLVHEPLDRASIRSGLALSVFPVLVYIAAFAIAAVSPRASLAVYASAPVLYFITVTLLRWLAPRGSAERQFT
Ga0187819_106450712	3300017943	Freshwater Sediment	LLPFGSALLSRYYEDPLALRVFGLILMGTAVARTAIWAYATRRPSLIHELLDRASIRSGLALSVFPVAVYIIAFAIAGVSSQASLAVYASGPVLYFIAITLLHLVAPRGSAERQFT
Ga0187847_102413131	3300017948	Peatland	PLALRLFGLILMATSVTRTAIWAYATQRPSLVHEPLDRASIRSGLALSVFPLLVYIAAFAIAAVSPRASLAVYASAPVLYFITITLLRWLAPRGSAERQFT
Ga0187817_100657863	3300017955	Freshwater Sediment	LSRYYEDPLALRLFGLILMATSVTRTAIWAYATQRQSLVHEPLDRASIRSGLALSVFPLLVYIAAFAIAAVSPRASLAVYASAPVLYFITITLLRWLAPRGSAERQFT
Ga0187817_105309561	3300017955	Freshwater Sediment	VTRTAIWAYATQRQSLVHEPLDRASIRSGLALSVFPLLVYLAAFAIAAASPPASLAVYASAPVLYFIAITLLRWLAPRGSAERQFT
Ga0187780_106113861	3300017973	Tropical Peatland	VCLLPFGFALLSRYHQDPLALRMFGLILMTTSLTRTAIWVYATRSPAVVHESIDRASFWSGLALSIFPLAIYVAAFAIAGVSTGASLAVYASAPVLYFITITLLRRLAPGGSAERQFT
Ga0187823_101033621	3300017993	Freshwater Sediment	LSRYYEDPLALRVFGLILMATSVTRTAIWAYATQRPSLVHEPLDRASIRSGLALSVFPLLVYIAAFAIAAVSPQVSLAVYASAPVLYFIAITLLRWLAPRGSAERQFT
Ga0187767_101786381	3300017999	Tropical Peatland	LRMFGLILMATSLTRTAIWVYATRSPSVVHEPIDRGSFWSGLALSVIPLAIYAAAFAIAGVSTGLSLAVYASAPVLYFITITLLRRLAPRGSAERQFT
Ga0187815_104697331	3300018001	Freshwater Sediment	IARTAIWAYATQRPSLIHEPLDRASIRSGLALSVFPVAVYIIAFAIAGVSSQASLAVYASGPVLYFIAITLLHLVAPRGSAERQFT
Ga0187890_102190742	3300018044	Peatland	EDPLALRLFGLILMATSVTRTAIWAYATQRPSLVHEPLDRASIRSGLALSVFPLLVYIAAFAIAAVSPRASLAVYASAPVLYFITITLLRWLAPRGSAERQFT
Ga0187765_113461802	3300018060	Tropical Peatland	MFGLILMATSVTGTAIWVYATRSPSVVHEPIDRASFWSGLALSVFPLVIYAAAFAIAGVSAGASLAVYALAPVLYFITITLLRRLAPRGSAERQFT
Ga0187769_104510921	3300018086	Tropical Peatland	MFGLILMATSLTRTAIWVYATRRPSVVHEPIDRASFWSGLALSVFPLVIYVAAFAVAGVSTGASLAVYASAPVLYFITITLLRRLAPRGSAERQFT
Ga0210388_107068151	3300021181	Soil	VCLLPFGSALLSRYYEDPLALRLFGLILIGMSVARTAIWAYATLRPSLIHEPLDRASIWSGLALSVFPVAVYIIAFAIAGVSSQASLAVYASGPVLYFIAITLLRLLAPRGSAERQFT
Ga0207680_108986351	3300025903	Switchgrass Rhizosphere	LRLFGLILMGTSVARTVIWAYAAQKPALVHEPLDRASFWSGLALSVFPVVVYVVAFAIARVSPQASLAVYASAPVLYFIAITLLRWLAPRGSAERQFT
Ga0257160_11065072	3300026489	Soil	SALLSRYYEDPVALRLFGLILIGTSVARTAIWAYATRRPSLIHEPLDRASIWSGLALSVFPVAVYIIAFAIAGVSSQASLVVYASGPVLYFIAITLLRLLAPRGSAERQFT
Ga0209380_108124231	3300027889	Soil	SSSRRWLNLLVLFAVCLLPFGSALLSRYYEDPLALRLFGLILIGMSVARTAIWAYATLRPSLIHEPLDRASIWSGLALSVFPVAVYIIAFAIAGVSSQASLAVYASGPVLYFIAITLLRLLAPRGSAERQFT
Ga0209415_108904261	3300027905	Peatlands Soil	RTAIWAYATRRPSLVHEPLDRASIRSGLALSVFPLLIYIAAFAIAAVSPRASLAAYASAPVLYFITITLLRWLAPRGSAERQFT
Ga0310039_102162142	3300030706	Peatlands Soil	FGLILMATSVARTVIWAYAAQKPSLVHEPLDRASFWSGLALSVFPVVVYVVAFAIARVSPQASLAVYASAPLLYFIAITLLRWLAPRGSAERQFT
Ga0265763_10281961	3300030763	Soil	GTSVARTAIWAYATLRPSLIHESLDRASIWSGLALSVFPVAVYIIAFAIAGVSSPASLAVYASGPVLYFIAITLLRLLAPRGSAERQFT
Ga0318541_104929492	3300031545	Soil	FGLILIGTSVARTIIWAYATQRPELIHEPLDRASIRSGLALSVFPVVVYLIAFAVAGVSPQASLAVYASGPVLYFIAITLLHWLAPHGSAERQFT
Ga0318538_106389861	3300031546	Soil	LNLLTLFAACLLPFGSALLSRYHQDPVALRMFGLILMATSLTRTAIWVYATRRPSVVHEPVDRASFWSGLALSVFPLAIYAAAFAVAGTSAGASLAVYASAPVLYFITITLLRRLAPRGSAERQFT
Ga0318538_106454642	3300031546	Soil	RMFGLILMATFLARTAIWVYATRRPSVVHDPIDRASFWSGLALSVFPLVIYAAAFAIAGVSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0318571_101013391	3300031549	Soil	YHQDPLALRMFGLILMATSVTRTAIWVYATRSPSVVHEPIDRASFWSGLALSVFPLGIYAAAFAVAGVSTGASLAVYASAPVLYFITITLLRWLAPRGSAERQFT
Ga0318528_106256382	3300031561	Soil	HQDPLALRMFGLILMATSVTRTAIWVYATRSPSVVHEPIDRASFWSGLALSVFPLGIYAAAFAVAGVSTGASLAVYASAPVLYFITITLLRWLAPRGSAERQFT
Ga0318573_106751641	3300031564	Soil	LSRYHQDPLALRMFGLILMATSLTRTIIWLYATLRPSVVHDPIDRASFWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0318560_100221325	3300031682	Soil	YGLILMATSLTRTIIWLYATLRPSVVHDPIDRASFWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0306917_106218932	3300031719	Soil	LFAACLLPFGSALLSRYHQDPVALRMFGLILMATSLTRTAIWVYATRRPSVVHEPVDRASFWSGLALSVFPLAIYAAAFAVAGTSAGASLAVYASAPVLYFITITLLRRLAPRGSAERQF
Ga0318493_100859303	3300031723	Soil	CLLPFGSALLSRYHQDPVALRMFGLILMATSLTRTAIWVYATRRPSVVHDPIDRASYWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0318492_101030101	3300031748	Soil	LSHFHQDPVALRMFGLILMATSLTRTAIWVYATRRPSVVHDPIDRASYWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0318494_102529801	3300031751	Soil	FAACLLPFGSALLSRYHQDPVALRMFGLILMATSLTRTAIWVYATRRPSVVHEPVDRASFWSGLALSVFPLAIYAAAFAVAGTSAGASLAVYASAPVLYFITITLLRRLAPRGSAERQFT
Ga0318494_106696812	3300031751	Soil	LILMATSLTRTAIWVYATRRPSVVHEPVDRASFWSGLALSIFPLAIYVAAFAVAGTSAGASLAVYASAPVLYFITITLLRWLAPRGSAERQFT
Ga0318494_107085792	3300031751	Soil	LSRYHQDPLALRMFGLILMATFLARTAIWVYATRRPSVVHDPIDRASFWSGLALSVFPLVIYAAAFAIAGVSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0318537_103235421	3300031763	Soil	GHRDLFTLISDTDRGIIWLNLLTLFAACLLPFGSALLSRYHQDPVALRMFGLILMATSLTRTAIWVYATRRPSVVHEPVDRASFWSGLALSIFPLAIYVAAFAVAGTSAGASLAVYASAPVLYFITITLLRWLAPRGSAERQFT
Ga0318535_103086142	3300031764	Soil	HFHQDPVALRMFGLILMATSLTRTAIWVYATRRPSVVHDPIDRASYWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0318554_103254761	3300031765	Soil	FGAGLLSRYHQDPLALRMFGLILMATSLTRTIIWLYATLRPSVVHDPLDRASFWSGLALSGFPLVIYAVAFAIAGVSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0318509_102875641	3300031768	Soil	FGLILMATSLTRTAIWVYATRRPSVVHEPVDRASFWSGLALSIFPLAIYVAAFAVAGTSAGASLAVYASAPVLYFITITLLRWLAPRGSAERQFT
Ga0318526_101281222	3300031769	Soil	NLLTLFAACLLPFGSALLSRYHQDPVALRMFGLILMATSLTRTAIWVYATRRPSVVHEPVDRASFWSGLALSVFPLAIYAAAFAVAGTSAGASLAVYASAPVLYFITITLLRRLAPRGSAERQFT
Ga0318546_102541762	3300031771	Soil	LSSYHQDVVALHMFGLILMATSLTRTIIWLYATLRPSVVHDPIDRASFWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0318546_110473161	3300031771	Soil	LSHYYEDPLALRMFGLILIGTSVARTIIWAYATQRPELIHEPLDRASIRSGLALSVFPVVVYLIAFAVAGVSPQASLAVYASGPVLYFIAITLLHWLAPHGSAERQFT
Ga0318566_106089542	3300031779	Soil	YHQDPVALRMFGLILMATSLTRTAIWVYATRRPSVVHEPVDRASFWSGLALSIFPLAIYVAAFAVAGTSAGASLAVYASAPVLYFITITLLRWLAPRGSAERQFT
Ga0318547_110097671	3300031781	Soil	TLFAACLLPFGAGLLSRYHQDPLALRMFGLILMATSLTRTIIWLYATLRPSVVHDPIDRASFWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0318557_100510761	3300031795	Soil	ALRMFGLILMATSLTRTAIWVYATRRPSVVHDPIDRASYWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0318565_100031669	3300031799	Soil	LFAACLLPFGSALLSHFHQDPVALRMFGLILMATSLTRTAIWVYATRRPSVVHDPIDRASYWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQF
Ga0318568_100563691	3300031819	Soil	TLFAACLLPFGSALLSRYHQDPLALRMFGLILMATSVTRTAIWVYATRSPSVVHEPIDRASFWSGLALSVFPLGIYAAAFAVAGVSTGASLAVYASAPVLYFITITLLRWLAPRGSAERQFT
Ga0307478_109632191	3300031823	Hardwood Forest Soil	SALLSRHYEDPLALRLFGLILMATSVTRTAIWAYATQRPSLVHEPLNRASIRSGLALSVFPLLVYLAAFAIAAASPRASLAVYASAPVLYFIAITLLRWLAPRGSAERQFT
Ga0318564_105262521	3300031831	Soil	RMFGLILMATSLTRTAIWVYATRRPSVVHEPLDRASFWSGLALSIFPLVIYAAAFAVAGTSTGASLAVYASAPVLYFITITLLRRLAPRGSAERQFT
Ga0310917_104791382	3300031833	Soil	ILMATSVTRTAIWVYATRRPSVMHEPLDRASFWSGLALSVFPLVIYVVAFAVAGVSAGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0310917_110495822	3300031833	Soil	LNLLTLFAACLLPFGSALLSHFHQDPVALRMFGLILMATSLTRTAIWVYATRRPSVVHDPIDRASYWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0318512_101261152	3300031846	Soil	HQDPVALRMFGLILMATSLTRTAIWVYATRRPSVVHEPVDRASFWSGLALSVFPLAIYAAAFAVAGTSAGASLAVYASAPVLYFITITLLRRLAPRGSAERQFT
Ga0318512_101891011	3300031846	Soil	ACLLPFGSALLSSYHQDVVALHMFGLILMATSLTRTIIWLYATLRPSVVHDPIDRASFWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0306919_109608241	3300031879	Soil	MFGLILMATSLTRTAIWVYATRRPSVVHEPLDRASFWSGLALSIFPLVIYAAAFAVAGTSTGASLAVYASAPVLYFITITLLRRLAPRGSAERQFT
Ga0306925_104079821	3300031890	Soil	LLTLFAACLLPFGSALLSHFHQDPVALRMFGLILMATSLTRTAIWVYATRRPSVVHDPIDRASYWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0318536_102881851	3300031893	Soil	ACLLPFGSALLSRYHQDPLALRMFGLILIATSLSRTIIWVYATRRPSVVHDPIDRPSYWSGLALSVFPLVIYAVAFALAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0318520_110683311	3300031897	Soil	QDPLALRMFGLILMATSLARTIIWLYATLRPSVVHDPLDRASFWSGLALSVFPLVIYAVAFAIAGVSTGASLAVYASAPVSYFITITLLRRLAPQGSEERQFT
Ga0306923_115221011	3300031910	Soil	GLILMATSVTRTAIWAYALRRPSVVHEPIDRASFWSGLALSAFPLVIYAVAFAIAGVSTGASLAVYAAAPVLYFITITLLRRLAPRGSEERQFT
Ga0306921_107240451	3300031912	Soil	LMATSLTRTIIWLYATLRPSVVHDPIDRASFWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0310910_112027762	3300031946	Soil	ALRMFGLILMATSLTRTAIWVYATRRPSVVHDPIDRASYWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYYITITLLRRLAPQGSEERQFT
Ga0310909_109858532	3300031947	Soil	TLFAACLLPFGSALLSRYHQDPVALRMFGLILMATSLTRTAIWVYATRRPSVVHEPLDRASFWSGLALSIFPLVIYVAAFAVAGVSTGASLAVYASAPVLYFITITLLRWLAPRGSAERQFT
Ga0306922_119329962	3300032001	Soil	WLNLLTLFAACLLPFGSALLSRYHQDPVALRMFGLILMATSVTRTAIWVYATRSPSVVHEPIDRASFWSGLALSVFPLVIYVAAFAIAGVSAGASLAVYASAPVLYFITITLLRRLAPRGSAERQFT
Ga0318563_106120491	3300032009	Soil	TSLTRTAIWVYATRRPSVVHEPVDRASFWSGLALSIFPLAIYVAAFAVAGTSAGASLAVYASAPVLYFITITLLRWLAPRGSAERQFT
Ga0310911_104958492	3300032035	Soil	RTIIWVYATRRPSVVHDPIDRPSYWSGLALSVFPLVIYAVAFALAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT
Ga0318504_100953541	3300032063	Soil	LTLFAACLLPFGSALLSRYHQDPLALRMFGLILMATSVTRTAIWVYATRSPSVVHEPIDRASFWSGLALSVFPLVIYVAAFAIAGVSAGASLAVYASAPVLYFITITLLRRLAPRGSAERQFT
Ga0318540_104201462	3300032094	Soil	QDPVALRMFGLILMATSVTRTAIWVYATRSPSVVHEPIDRASFWSGLALSVFPLVIYVAAFAIAGVSAGASLAVYASAPVLYFITITLLRRLAPRGSAERQFT
Ga0311301_119108191	3300032160	Peatlands Soil	LLTLFAVCLLPFGSALLSRYYEDPLALRVFGLILMATSVTRTAIWAYATRRPSLVHEPLDRASIRSGLALSVFPVLVYIAAFAIAAVSPRASLAAYASAPVLYFITITLLRWLAPRGSAERQFT
Ga0306920_1034401061	3300032261	Soil	LPFGSALLSRYHQDPVALRMFGLILMATSVTRTAIWVYATRSPSVVHEPIDRASFWSGLALSVFPLVIYAVAFAVAGVSAGACLAVYALAPVLYFITITLLRWLAPRGSAERQFT
Ga0335085_101629024	3300032770	Soil	MFGLILMGTSVARTVIWAYARRRPELIHEPLDPASTRSGLALSVFPVVVYLIAFAVARVSAQASLAVYALGPVMYFIAITLLHWLAPRRSAERQFT
Ga0335082_100765163	3300032782	Soil	MFGLILMGTSVARTVIWAYARRRPELIHEPLDPASTRSGLALSVFPVVVYLIAFAVGGVSPQASLAVCASGPVMYFIVITLLHWLAPRGSAERQFT
Ga0335079_108202162	3300032783	Soil	MFGLILMATSVTRTAIWAYAARRPSVVHEPIDRASFWSGLALSAFPLAIYVVAFAVAGVSTGASLAVYASAPVLYFIWITLLRWLAPRGSAERQFT
Ga0335078_110300092	3300032805	Soil	DPLALRMFGLILIATSLSRTIIWVYATRRPSVVHDPIDRASYWSGLALSVFPLVIYVVAFAVAGTSTGASLAVYASAPVLYFITITLLRRIAPRGSEERQFT
Ga0318519_101595542	3300033290	Soil	TLFAACLLPFGSALLSRYHQDPVALRMFGLILMATSLTRTAIWVYATRRPSVVHDPIDRASYWSGLALSVFPLVIYAVAFAIAGTSTGASLAVYASAPVLYFITITLLRRLAPQGSEERQFT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090642

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences