Metagenome / Metatranscriptome Family F090752

Basic Information
Family ID	F090752
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	42 residues
Representative Sequence	VWDGMDGPIVERENVALDSQFAVHRYLRLAEKTAVGFHWDW
Number of Associated Samples	101
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	3.70 %
% of genes near scaffold ends (potentially truncated)	97.22 %
% of genes from short scaffolds (< 2000 bps)	90.74 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (51.852 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.778 % of family members)
Environment Ontology (ENVO)	Unclassified (27.778 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.02% β-sheet: 0.00% Coil/Unstructured: 60.98%
Feature Viewer

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Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00480	ROK	31.48
PF12802	MarR_2	9.26
PF13538	UvrD_C_2	1.85
PF09848	DUF2075	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	62.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
All Organisms	root	All Organisms	48.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
cellular organisms	root	All Organisms → cellular organisms	48.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	48.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	48.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	39.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.78 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003368\|JGI26340J50214_10006594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3750	Open in IMG/M
3300003505\|JGIcombinedJ51221_10321980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	629	Open in IMG/M
3300005178\|Ga0066688_10783216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	598	Open in IMG/M
3300005332\|Ga0066388_104453348	Not Available	714	Open in IMG/M
3300005347\|Ga0070668_100281671	Not Available	1389	Open in IMG/M
3300005468\|Ga0070707_100689283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	984	Open in IMG/M
3300005529\|Ga0070741_10807931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	818	Open in IMG/M
3300005535\|Ga0070684_100153425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2087	Open in IMG/M
3300005540\|Ga0066697_10760156	Not Available	528	Open in IMG/M
3300005560\|Ga0066670_10753749	Not Available	590	Open in IMG/M
3300005566\|Ga0066693_10217399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	749	Open in IMG/M
3300006032\|Ga0066696_10311131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1024	Open in IMG/M
3300006052\|Ga0075029_100897324	Not Available	608	Open in IMG/M
3300006162\|Ga0075030_100731420	Not Available	783	Open in IMG/M
3300006174\|Ga0075014_100160503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1105	Open in IMG/M
3300006175\|Ga0070712_100335889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1232	Open in IMG/M
3300006176\|Ga0070765_102318888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	500	Open in IMG/M
3300006755\|Ga0079222_11003150	Not Available	718	Open in IMG/M
3300006806\|Ga0079220_10156159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1265	Open in IMG/M
3300006893\|Ga0073928_10506036	Not Available	865	Open in IMG/M
3300006904\|Ga0075424_101970295	Not Available	617	Open in IMG/M
3300006954\|Ga0079219_12024205	Not Available	548	Open in IMG/M
3300009012\|Ga0066710_100603920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1665	Open in IMG/M
3300009545\|Ga0105237_10445606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1301	Open in IMG/M
3300009698\|Ga0116216_10632704	Not Available	644	Open in IMG/M
3300009792\|Ga0126374_11153638	Not Available	618	Open in IMG/M
3300009824\|Ga0116219_10140837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1398	Open in IMG/M
3300010303\|Ga0134082_10237554	Not Available	753	Open in IMG/M
3300010359\|Ga0126376_12916855	Not Available	528	Open in IMG/M
3300010876\|Ga0126361_10076282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2222	Open in IMG/M
3300010880\|Ga0126350_10316768	Not Available	714	Open in IMG/M
3300012201\|Ga0137365_10285363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1225	Open in IMG/M
3300012206\|Ga0137380_10648482	Not Available	920	Open in IMG/M
3300012491\|Ga0157329_1001296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1240	Open in IMG/M
3300012507\|Ga0157342_1003497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1347	Open in IMG/M
3300012683\|Ga0137398_10640682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	736	Open in IMG/M
3300012988\|Ga0164306_10170073	Not Available	1504	Open in IMG/M
3300012988\|Ga0164306_11741220	Not Available	541	Open in IMG/M
3300013307\|Ga0157372_11923598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	680	Open in IMG/M
3300014150\|Ga0134081_10401967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	514	Open in IMG/M
3300014157\|Ga0134078_10189025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	833	Open in IMG/M
3300014200\|Ga0181526_11088377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	502	Open in IMG/M
3300014487\|Ga0182000_10062859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1148	Open in IMG/M
3300016294\|Ga0182041_10948728	Not Available	775	Open in IMG/M
3300016294\|Ga0182041_11961898	Not Available	545	Open in IMG/M
3300016319\|Ga0182033_11196563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	681	Open in IMG/M
3300016422\|Ga0182039_11338272	Not Available	649	Open in IMG/M
3300016445\|Ga0182038_10101962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2088	Open in IMG/M
3300017972\|Ga0187781_10891723	Not Available	648	Open in IMG/M
3300017974\|Ga0187777_10095332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1950	Open in IMG/M
3300018037\|Ga0187883_10648903	Not Available	549	Open in IMG/M
3300018043\|Ga0187887_10376443	Not Available	838	Open in IMG/M
3300018089\|Ga0187774_10273075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	970	Open in IMG/M
3300020582\|Ga0210395_11371842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	516	Open in IMG/M
3300021170\|Ga0210400_11053480	Not Available	660	Open in IMG/M
3300021401\|Ga0210393_10660198	Not Available	853	Open in IMG/M
3300021404\|Ga0210389_10293096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1275	Open in IMG/M
3300021432\|Ga0210384_10731574	Not Available	884	Open in IMG/M
3300021477\|Ga0210398_10032969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4329	Open in IMG/M
3300022756\|Ga0222622_10623357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	780	Open in IMG/M
3300024279\|Ga0247692_1013518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1252	Open in IMG/M
3300025923\|Ga0207681_10123760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1901	Open in IMG/M
3300026325\|Ga0209152_10377421	Not Available	550	Open in IMG/M
3300027172\|Ga0208098_1000238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2790	Open in IMG/M
3300027330\|Ga0207777_1042328	Not Available	817	Open in IMG/M
3300027567\|Ga0209115_1129589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	569	Open in IMG/M
3300027854\|Ga0209517_10614324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	573	Open in IMG/M
3300027882\|Ga0209590_10369605	Not Available	925	Open in IMG/M
3300028781\|Ga0302223_10312439	Not Available	520	Open in IMG/M
3300028782\|Ga0307306_10080831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	847	Open in IMG/M
3300028828\|Ga0307312_11178711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	506	Open in IMG/M
3300028906\|Ga0308309_11417028	Not Available	595	Open in IMG/M
3300029943\|Ga0311340_11056292	Not Available	663	Open in IMG/M
3300030057\|Ga0302176_10188516	Not Available	821	Open in IMG/M
3300030524\|Ga0311357_11032009	Not Available	721	Open in IMG/M
3300030677\|Ga0302317_10419001	Not Available	589	Open in IMG/M
3300030738\|Ga0265462_11165945	Not Available	683	Open in IMG/M
3300031234\|Ga0302325_10385696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2195	Open in IMG/M
3300031545\|Ga0318541_10343306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	834	Open in IMG/M
3300031616\|Ga0307508_10848284	Not Available	535	Open in IMG/M
3300031668\|Ga0318542_10307818	Not Available	811	Open in IMG/M
3300031681\|Ga0318572_10594412	Not Available	659	Open in IMG/M
3300031708\|Ga0310686_118017965	Not Available	902	Open in IMG/M
3300031723\|Ga0318493_10641350	Not Available	593	Open in IMG/M
3300031793\|Ga0318548_10342919	Not Available	733	Open in IMG/M
3300031793\|Ga0318548_10452825	Not Available	628	Open in IMG/M
3300031799\|Ga0318565_10199372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	973	Open in IMG/M
3300031819\|Ga0318568_10570412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	705	Open in IMG/M
3300031820\|Ga0307473_11124774	Not Available	580	Open in IMG/M
3300031831\|Ga0318564_10444259	Not Available	565	Open in IMG/M
3300031833\|Ga0310917_10291345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1103	Open in IMG/M
3300031833\|Ga0310917_10728662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	671	Open in IMG/M
3300031859\|Ga0318527_10473436	Not Available	534	Open in IMG/M
3300031879\|Ga0306919_10360057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1112	Open in IMG/M
3300031954\|Ga0306926_11385944	Not Available	816	Open in IMG/M
3300032008\|Ga0318562_10691188	Not Available	587	Open in IMG/M
3300032008\|Ga0318562_10704823	Not Available	580	Open in IMG/M
3300032035\|Ga0310911_10269393	Not Available	977	Open in IMG/M
3300032039\|Ga0318559_10236125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	844	Open in IMG/M
3300032043\|Ga0318556_10491512	Not Available	642	Open in IMG/M
3300032060\|Ga0318505_10014205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2961	Open in IMG/M
3300032060\|Ga0318505_10161602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1041	Open in IMG/M
3300032066\|Ga0318514_10496578	Not Available	649	Open in IMG/M
3300032066\|Ga0318514_10527973	Not Available	628	Open in IMG/M
3300032067\|Ga0318524_10564518	Not Available	598	Open in IMG/M
3300032076\|Ga0306924_10509186	Not Available	1370	Open in IMG/M
3300032892\|Ga0335081_10059421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5933	Open in IMG/M
3300033158\|Ga0335077_10205831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2209	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.59%
Host-Associated	Host-Associated	7.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.26%
Aquatic	Environmental → Aquatic	8.33%
Plants	Host-Associated → Plants	7.41%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.70%
Peat	Environmental → Terrestrial → Peat	5.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.63%
Freshwater	Environmental → Aquatic → Freshwater	3.70%
Sediment	Environmental → Aquatic → Sediment	3.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.85%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.81%
Loam	Environmental → Terrestrial → Soil → Loam	9.26%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.56%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.63%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.78%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.85%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	36.11%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.44%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.56%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.63%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.70%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.85%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.56%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.63%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.70%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.78%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.78%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.78%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.85%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.85%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.93%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012491	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610	Host-Associated	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024279	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300027172	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038 (SPAdes)	Environmental	Open in IMG/M
3300027330	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028781	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030677	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26340J50214_100065943	3300003368	Bog Forest Soil	AVWDGMDGPIVERESVTLDSQFAVHRYLRLAEKTTAGFHWDW*
JGIcombinedJ51221_103219802	3300003505	Forest Soil	DGMDGPIVEREPVGLDSQFAVHRYLRLAEQTAVGFHWDW*
Ga0066688_107832162	3300005178	Soil	VEWAVWDGLDGPIVERERVALDYQFAVHRYLRLAEKTAVGFHWDW*
Ga0066388_1044533482	3300005332	Tropical Forest Soil	WAVWDGMDGPIVERENVVLDSQFAVHRYLRLAEKTVIGFHWDW*
Ga0070668_1002816711	3300005347	Switchgrass Rhizosphere	KLPGNVVWAVWDGMDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW*
Ga0070707_1006892832	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	GNVVWAVWDGMDGPIIERESVALDSQFAVHRYLRLAEQTVVGFHWDW*
Ga0070741_108079312	3300005529	Surface Soil	DGMEGPIVDAQPVTLDSQHAVHRYLRLAERTVAGFHWEW*
Ga0070684_1001534253	3300005535	Corn Rhizosphere	WAVWDGMDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW*
Ga0066697_107601562	3300005540	Soil	PGKLPGNVVWAIWDGMDGPIIERESVALDSQFAVHRYLRLAEKTVVGFHWDW*
Ga0066670_107537492	3300005560	Soil	FHPGKLPGNVVWAIWDGMDGPIIERESVALDSQFAVHRYLRLAEKTVVGFHWDW*
Ga0066693_102173991	3300005566	Soil	WDGMDGPIIERESVALDSQFAVHRYLRLAEKTVVGFHWDW*
Ga0066696_103111312	3300006032	Soil	VWAIWDGMDGPIIERESVALDSQFAVHRYLRLAEKTVVGFHWDW*
Ga0075029_1008973241	3300006052	Watersheds	VVWAVWDGMDGPIVERERVALDSQFAVHRYLRLAEKTTVGFHWDW*
Ga0075030_1007314201	3300006162	Watersheds	VWDGMDGPIVERESVALDSQFAAHRYLRLAEKTTVGFHWDW*
Ga0075014_1001605032	3300006174	Watersheds	WAVWDGMDGPIIERENVALDSQFAVHRYLRLAEKTVVGFHWDW*
Ga0070712_1003358892	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	DGMDGPIIERENVALDSQFAVHRYLRLAETTVVGFHWDW*
Ga0070765_1023188881	3300006176	Soil	AVWDGMDGPIVERQPVVLDSQFAVHRYLRLAEKTVAGFHWDW*
Ga0079222_110031502	3300006755	Agricultural Soil	WAVWDGMDGPIIERENVALDSQFAVHRYLRLAETTVVGFHWDW*
Ga0079220_101561591	3300006806	Agricultural Soil	GPIAESERVTLDSQFAVHRYLRLAEKTTVGFHWDW*
Ga0073928_105060362	3300006893	Iron-Sulfur Acid Spring	WAVWDGLDGPIVNREDVTLDSQFAVHRYLRLAEKTAVGFHWDW*
Ga0075424_1019702951	3300006904	Populus Rhizosphere	KLPGNVVWAVWDGMDGPIIERESVVLDSQFAVHRYLRLAETTVVGFHWDW*
Ga0079219_120242051	3300006954	Agricultural Soil	PIAESEHVTLDSQFAVHRYLRLAEQTTVGFHWDW*
Ga0066710_1006039203	3300009012	Grasslands Soil	WDGMDGPIIERENVALDSQFAVHRYLRLAETTVVGFHWDW
Ga0105237_104456062	3300009545	Corn Rhizosphere	GMDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW*
Ga0116216_106327041	3300009698	Peatlands Soil	LPAKVEWAVWDGMDGPIVERESVTLDSQFAVHRYLRLAEKTTVGFHWDW*
Ga0126374_111536381	3300009792	Tropical Forest Soil	PASCRAPSWAVWDGMDGPIIERESVALDSQFAVHRYLRLAENTAVGFHWDW*
Ga0116219_101408372	3300009824	Peatlands Soil	DKLPSNVEWAVWDGLEGAIVERESVALDTQFAVHRYLRLAEKTAVGFHWDW*
Ga0134082_102375541	3300010303	Grasslands Soil	PIIERESVALDSQFAVHRYLRLAEKTVVGFHWDW*
Ga0126376_129168552	3300010359	Tropical Forest Soil	VWDGMDGPIIERENVALDSQFAVHRYLRLAEKTAVGFHWDW*
Ga0126361_100762821	3300010876	Boreal Forest Soil	MDGPIVKRESVTLDSQFAVHRYLRLAEKTTVGFHWDWSH*
Ga0126350_103167682	3300010880	Boreal Forest Soil	PVNVVWAVWDGLDGPIVNREDVTLDSQFAVHRYLRLAEKTAVGFHWDW*
Ga0137365_102853631	3300012201	Vadose Zone Soil	FHPGKLPGNVVWAIWDGMDGPIIERESVALDSQFAVHRYLRLAEKTAVGFHWDW*
Ga0137380_106484823	3300012206	Vadose Zone Soil	DGMDGPIAEREHVTLDSQFAVHRYLRLAEKTAVGFHWDW*
Ga0157329_10012961	3300012491	Arabidopsis Rhizosphere	NVVWAVWDGMDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW*
Ga0157342_10034971	3300012507	Arabidopsis Rhizosphere	MDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW*
Ga0137398_106406821	3300012683	Vadose Zone Soil	GIDGPIAESERVTLDSQFAVHRYLRLAEQTTVGFHWDW*
Ga0164306_101700731	3300012988	Soil	KLPGSVVWAVWDGMDSPINEREHVALDSQFAVHRYLRLAETTVVGFHWDW*
Ga0164306_117412202	3300012988	Soil	WDGMDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW*
Ga0157372_119235981	3300013307	Corn Rhizosphere	GPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW*
Ga0134081_104019671	3300014150	Grasslands Soil	PIIERESVVLDSQFAVHRYLRLAETTVVGFHWDW*
Ga0134078_101890251	3300014157	Grasslands Soil	LPDSVVWAVWDGMDGPIIDREQVALDSQFAVHRYLRLAETTVVGFHWDW*
Ga0181526_110883772	3300014200	Bog	MDGPIVERESVTLDSQFAVHRYLRLAEKTTVGFHWDW*
Ga0182000_100628591	3300014487	Soil	PIIERESVALDSQFAVHRYLRLAETTVVGFHWDW*
Ga0182041_109487282	3300016294	Soil	VWAIWDGMDGPIVERERVTLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0182041_119618981	3300016294	Soil	NVEWAVWDGLDGPIVEREPVVLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0182033_111965632	3300016319	Soil	VAVWDGMDGPIIERESVTLDTQFAVHRYLRLAEKTAVGFHWDW
Ga0182039_113382722	3300016422	Soil	LPRNVVWAVWDGMDGPIVERERVTLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0182038_101019621	3300016445	Soil	GPIVEREPVALDSQFAVHRYLRLAERTAVGFHWDW
Ga0187781_108917231	3300017972	Tropical Peatland	NVVWAVWDGMDGPIVEQEKVSLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0187777_100953323	3300017974	Tropical Peatland	PSDVVWAVWDGMDGPIVEREHVSLDRQFAVHRYLRLAEKTTVGFHWDW
Ga0187883_106489033	3300018037	Peatland	DGMDGPIAESEQVTLDRQFAVHRYLRLAEQTTVGFHWNW
Ga0187887_103764432	3300018043	Peatland	DGPIVEREPVELDSQFAVHRYLRLAEKTTVGFHWDW
Ga0187774_102730752	3300018089	Tropical Peatland	VWDGMDGPIVERENVALDSQFAVHRYLRLAERTVVGFHWDW
Ga0210395_113718422	3300020582	Soil	WAVWDGMQGDVADDQEVVLDSQHSVHKYLRLAERTVVGYHWEW
Ga0210400_110534802	3300021170	Soil	VWDGLEGPIVEREPVALDTQFAVHRYLRLAEQTAVGFHWDW
Ga0210393_106601981	3300021401	Soil	GMEGPIVERESVALDSQFAVHRYLRLAEKTTVGFHWDW
Ga0210389_102930962	3300021404	Soil	LPAQVVWAVWDGLDGPIVDREDVTLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0210384_107315741	3300021432	Soil	WDGMDGPIIERESVALDSQFAVHRYLRLAEQTVVGFHWDW
Ga0210398_100329694	3300021477	Soil	LPAKVVWAVWDGLDGPIVDREDVTLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0222622_106233572	3300022756	Groundwater Sediment	NVVWAVWDGMDGPIIERESVVLDSQFAVHRYLRLAETTVVGFHWDW
Ga0247692_10135181	3300024279	Soil	DGMDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW
Ga0207681_101237601	3300025923	Switchgrass Rhizosphere	GNVVWAVWDGMDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW
Ga0209152_103774212	3300026325	Soil	DGPIIERESVALDSQFAVHRYLRLAEKTVVGFHWDW
Ga0208098_10002383	3300027172	Forest Soil	GLDGPIVEREPVALDSQFAVHRYLRLAEQTAVGFHWDW
Ga0207777_10423282	3300027330	Tropical Forest Soil	DGLDGPIVQREPVVLDSQFAVHRYLRLAEKTTAGFHWDW
Ga0209115_11295892	3300027567	Forest Soil	GPIVEREPVALDSQFAVHRYLRLAEQTAVGFHWDW
Ga0209517_106143241	3300027854	Peatlands Soil	VWAVWDGMDGPIVERESVALDSQFAVHRYLRLAEKTTVGFHWDW
Ga0209590_103696051	3300027882	Vadose Zone Soil	VWDGMDGPIVERERVALDSQFAVHRYLRLAEKTAVGFHWDW
Ga0302223_103124391	3300028781	Palsa	DGLDGPIVEREHVALDSQFAVHRYLRLAEKTAAGFHWDW
Ga0307306_100808311	3300028782	Soil	VWDGMDGPIVERESVALDSQFAVHRYLRLAETTVVGFHWDW
Ga0307312_111787111	3300028828	Soil	PGNGVWAVWDGMDGPIIERESVALDSQFAVHRYLRLAETTVVGFHWDW
Ga0308309_114170282	3300028906	Soil	GPIVEREHVALDSQFAVHRYLRLAEKTAAGFHWDW
Ga0311340_110562921	3300029943	Palsa	SIVWAVWDGLDGPIVEREPAILDSQFAVHRYLRLAEQTAVGFHWDW
Ga0302176_101885161	3300030057	Palsa	LPGNVVWAVWDGMDGPIVEREPVVLDSQFAVHRYLRLAEKTVAGFHWDW
Ga0311357_110320091	3300030524	Palsa	VVWAVWDGMDGPIVEREPVVLDSQFAVHRYLRLAEKTVAGFHWDW
Ga0302317_104190012	3300030677	Palsa	WDGMDGPIVEREPVVLDSQFAVHRYLRLAEKTAVGSHWDW
Ga0265462_111659453	3300030738	Soil	DVVWAVWDGMDGPIVDRESVGLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0302325_103856963	3300031234	Palsa	DGLDGPIVEREPAVLDSQFAVHRYLRLAEQTAVGFHWDW
Ga0318541_103433061	3300031545	Soil	DGPIVERENVALDSQFAVHRYLRLAEKTVVGFHWDW
Ga0307508_108482842	3300031616	Ectomycorrhiza	WAVWDGIDGPIAESERVTLDSQFAVHRYLRLAEQTTVGFHWDW
Ga0318542_103078182	3300031668	Soil	WDGMDGPIVERENVALDSQFAVHRYLRLAEKTAVGFHWDW
Ga0318572_105944122	3300031681	Soil	VWDGLDGPIVEREPVVLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0310686_1180179651	3300031708	Soil	EWAVWDGLDGPIVEREPVALDSQFAVHRYLRLAEHTAAGFHWDW
Ga0318493_106413502	3300031723	Soil	PSSVVWAVWDGMDGPIVERENVALDSQFAVHRYLRLAEKTVVGFHWDW
Ga0318548_103429191	3300031793	Soil	KLPGSVVWAVWDGMDGPIIERENVSLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0318548_104528251	3300031793	Soil	VVWAVWDGMDGPIVEREPVTLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0318565_101993721	3300031799	Soil	LPGSVVWAVWDGMDGPIVERENVALDSQFAVHRYLRLAEKTVVGFHWDW
Ga0318568_105704122	3300031819	Soil	VWDGLDGPIVQREPVALDSQFAVHRYLRLAEKTAVGFHWDW
Ga0307473_111247741	3300031820	Hardwood Forest Soil	AVWDGMDGPIVEREDVALDSQFAVHRYLRLAETTVVGFHWDW
Ga0318564_104442591	3300031831	Soil	VPGNVEWAIWDGLDGPIVERERVDLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0310917_102913451	3300031833	Soil	KLPGSVVWAVWDGMDGPIVERENVALDSQFAVHRYLRLAEKTVVGFHWDW
Ga0310917_107286621	3300031833	Soil	LDGPIVEREPVALDSQFAVHRYLRLAEKTAVGFHWDW
Ga0318527_104734362	3300031859	Soil	LDGPIVEREPVVLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0306919_103600571	3300031879	Soil	EGSIVEREPVALDSQFAVHRYLRLAEKTAVGFHWDW
Ga0306926_113859441	3300031954	Soil	MDGPIVERENVALDSQFAVHRYLRLAEKTVVGFHWDW
Ga0318562_106911881	3300032008	Soil	VWDGLDGPIVQREPVVLDSQFAVHRYLRLAEQTAVGFHWDW
Ga0318562_107048231	3300032008	Soil	GSVVWAVWDGMDGPIVERENVALDSQFAVHRYLRLAEKTVVGFHWDW
Ga0310911_102693932	3300032035	Soil	LPSNVVWAVWDGMDGPIIERENVSLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0318559_102361251	3300032039	Soil	WAVWDGLDGPIVQREPVALDSQFAVHRYLRLAEKTAVGFHWDW
Ga0318556_104915122	3300032043	Soil	GMDGPIVEREPVTLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0318505_100142053	3300032060	Soil	VWDGLDGPIVEREPVALDSQFAVHRYLRLAERTAVGFHWDW
Ga0318505_101616022	3300032060	Soil	DGMDGPIVERENVALDSQFAVHRYLRLAEKTVVGFHWDW
Ga0318514_104965782	3300032066	Soil	VDWAVWDGLDGPIVEREPVVLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0318514_105279732	3300032066	Soil	VWDGMDGPIVERENVALDSQFAVHRYLRLAEKTAVGFHWDW
Ga0318524_105645182	3300032067	Soil	GMDGPIIERESVMLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0306924_105091862	3300032076	Soil	EWAVWDGLDGPIVERETVALDSQFAVHRYLRLAEKTAVGFHWDW
Ga0335081_100594216	3300032892	Soil	MDGPIVEREPVTLDSQFAVHRYLRLAEKTAVGFHWDW
Ga0335077_102058311	3300033158	Soil	WAVWDGMDGPIVERENVALDSQFAVHRYLRLAEKTVVGFHWDW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090752

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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