Metagenome / Metatranscriptome Family F090753

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090753
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	69 residues
Representative Sequence	MFGNVRQSSPFDGILIDDRNERPLTIALATIVVVWSIAFALTFASGHTGANSASWLSAPAAVTSSTGK
Number of Associated Samples	72
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.48 %
% of genes near scaffold ends (potentially truncated)	18.52 %
% of genes from short scaffolds (< 2000 bps)	87.04 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.926 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (24.074 % of family members)
Environment Ontology (ENVO)	Unclassified (28.704 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.037 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.25% β-sheet: 0.00% Coil/Unstructured: 68.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00334	NDK	16.67
PF04226	Transgly_assoc	5.56
PF05292	MCD	3.70
PF00211	Guanylate_cyc	1.85
PF14490	HHH_4	1.85
PF02798	GST_N	1.85
PF13538	UvrD_C_2	1.85
PF16864	Dimerisation2	1.85
PF14520	HHH_5	0.93
PF03795	YCII	0.93
PF12358	DUF3644	0.93
PF00043	GST_C	0.93
PF02826	2-Hacid_dh_C	0.93
PF08327	AHSA1	0.93
PF00872	Transposase_mut	0.93
PF00589	Phage_integrase	0.93
PF13181	TPR_8	0.93
PF02735	Ku	0.93
PF00797	Acetyltransf_2	0.93
PF13417	GST_N_3	0.93
PF01070	FMN_dh	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0105	Nucleoside diphosphate kinase	Nucleotide transport and metabolism [F]	16.67
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	5.56
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.85
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.93
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	0.93
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.93
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.93
COG2162	Arylamine N-acetyltransferase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
All Organisms	root	All Organisms	49.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
cellular organisms	root	All Organisms → cellular organisms	49.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	35.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	25.00 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
Kaistiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae	2.78 %
Roseiarcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae	2.78 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.78 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.85 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
Bauldia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia	2.78 %
Roseiarcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus	2.78 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.78 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.85 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.93 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
unclassified Bauldia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia	2.78 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	2.78 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.78 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.85 %
Hyphomicrobium nitrativorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium nitrativorans	0.93 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.93 %
Bauldia sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia → Bauldia sp.	2.78 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	2.78 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.78 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.85 %
Hyphomicrobium nitrativorans NL23	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium nitrativorans → Hyphomicrobium nitrativorans NL23	0.93 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003219\|JGI26341J46601_10029687	All Organisms → cellular organisms → Bacteria → Proteobacteria	1779	Open in IMG/M
3300003219\|JGI26341J46601_10030112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1764	Open in IMG/M
3300003352\|JGI26345J50200_1019928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	699	Open in IMG/M
3300003368\|JGI26340J50214_10114149	Not Available	687	Open in IMG/M
3300004080\|Ga0062385_10871852	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300004091\|Ga0062387_100891204	Not Available	672	Open in IMG/M
3300004635\|Ga0062388_101192014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	753	Open in IMG/M
3300005712\|Ga0070764_10572928	Not Available	686	Open in IMG/M
3300006052\|Ga0075029_100022994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3500	Open in IMG/M
3300006052\|Ga0075029_100252815	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300006052\|Ga0075029_100278015	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300006059\|Ga0075017_100154771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1634	Open in IMG/M
3300006059\|Ga0075017_100686663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia → Bauldia sp.	787	Open in IMG/M
3300006059\|Ga0075017_101052194	Not Available	635	Open in IMG/M
3300006059\|Ga0075017_101610331	Not Available	513	Open in IMG/M
3300006174\|Ga0075014_100153767	Not Available	1126	Open in IMG/M
3300009520\|Ga0116214_1324644	Not Available	593	Open in IMG/M
3300009520\|Ga0116214_1377014	Not Available	552	Open in IMG/M
3300009521\|Ga0116222_1526171	Not Available	518	Open in IMG/M
3300009522\|Ga0116218_1118895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1202	Open in IMG/M
3300009523\|Ga0116221_1253869	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300009524\|Ga0116225_1531710	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300009665\|Ga0116135_1054618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1392	Open in IMG/M
3300009683\|Ga0116224_10485203	Not Available	589	Open in IMG/M
3300009698\|Ga0116216_10671605	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300009824\|Ga0116219_10404681	Not Available	761	Open in IMG/M
3300009824\|Ga0116219_10632147	Not Available	587	Open in IMG/M
3300010339\|Ga0074046_10120309	All Organisms → cellular organisms → Bacteria	1686	Open in IMG/M
3300010339\|Ga0074046_10174299	Not Available	1363	Open in IMG/M
3300010339\|Ga0074046_10559405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	679	Open in IMG/M
3300010339\|Ga0074046_10730295	Not Available	581	Open in IMG/M
3300010339\|Ga0074046_10760990	Not Available	567	Open in IMG/M
3300010341\|Ga0074045_10483733	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300010343\|Ga0074044_10096343	All Organisms → cellular organisms → Bacteria	1993	Open in IMG/M
3300010343\|Ga0074044_10312981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1032	Open in IMG/M
3300010343\|Ga0074044_10530080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	769	Open in IMG/M
3300010379\|Ga0136449_100411973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium nitrativorans → Hyphomicrobium nitrativorans NL23	2392	Open in IMG/M
3300010379\|Ga0136449_100816343	All Organisms → cellular organisms → Bacteria	1537	Open in IMG/M
3300010379\|Ga0136449_100974175	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300010379\|Ga0136449_101785894	Not Available	921	Open in IMG/M
3300010379\|Ga0136449_101946684	Not Available	871	Open in IMG/M
3300010379\|Ga0136449_102806559	Not Available	687	Open in IMG/M
3300010379\|Ga0136449_103020286	Not Available	656	Open in IMG/M
3300014164\|Ga0181532_10534966	Not Available	640	Open in IMG/M
3300014168\|Ga0181534_10507493	Not Available	683	Open in IMG/M
3300014201\|Ga0181537_10306312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1091	Open in IMG/M
3300014489\|Ga0182018_10767648	Not Available	500	Open in IMG/M
3300014654\|Ga0181525_10751527	Not Available	549	Open in IMG/M
3300017822\|Ga0187802_10235974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	706	Open in IMG/M
3300017942\|Ga0187808_10339295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	681	Open in IMG/M
3300017943\|Ga0187819_10666947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia → Bauldia sp.	587	Open in IMG/M
3300017943\|Ga0187819_10747434	Not Available	550	Open in IMG/M
3300017946\|Ga0187879_10015982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4692	Open in IMG/M
3300017946\|Ga0187879_10699638	Not Available	564	Open in IMG/M
3300017946\|Ga0187879_10815333	Not Available	521	Open in IMG/M
3300017955\|Ga0187817_10348783	Not Available	944	Open in IMG/M
3300017955\|Ga0187817_10398494	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300017995\|Ga0187816_10309017	Not Available	694	Open in IMG/M
3300018013\|Ga0187873_1148070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	898	Open in IMG/M
3300018019\|Ga0187874_10225904	Not Available	773	Open in IMG/M
3300018025\|Ga0187885_10044852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2299	Open in IMG/M
3300018033\|Ga0187867_10117195	Not Available	1544	Open in IMG/M
3300018038\|Ga0187855_10030841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3431	Open in IMG/M
3300018038\|Ga0187855_10064015	Not Available	2261	Open in IMG/M
3300018038\|Ga0187855_10378971	Not Available	825	Open in IMG/M
3300018040\|Ga0187862_10150721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1567	Open in IMG/M
3300018043\|Ga0187887_10536326	Not Available	690	Open in IMG/M
3300021403\|Ga0210397_10367500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia → Bauldia sp.	1070	Open in IMG/M
3300021405\|Ga0210387_10980764	Not Available	741	Open in IMG/M
3300021444\|Ga0213878_10040246	Not Available	1799	Open in IMG/M
3300022521\|Ga0224541_1008815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1086	Open in IMG/M
3300022522\|Ga0242659_1139138	Not Available	508	Open in IMG/M
3300022527\|Ga0242664_1108308	Not Available	578	Open in IMG/M
3300022533\|Ga0242662_10205868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	621	Open in IMG/M
3300022533\|Ga0242662_10340970	Not Available	509	Open in IMG/M
3300027567\|Ga0209115_1002142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3673	Open in IMG/M
3300027625\|Ga0208044_1116600	Not Available	765	Open in IMG/M
3300027692\|Ga0209530_1041188	Not Available	1363	Open in IMG/M
3300027698\|Ga0209446_1132047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	644	Open in IMG/M
3300027701\|Ga0209447_10107602	Not Available	766	Open in IMG/M
3300027737\|Ga0209038_10101747	Not Available	868	Open in IMG/M
3300027812\|Ga0209656_10051049	Not Available	2335	Open in IMG/M
3300027812\|Ga0209656_10095833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1567	Open in IMG/M
3300027812\|Ga0209656_10384318	Not Available	632	Open in IMG/M
3300027824\|Ga0209040_10094495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1703	Open in IMG/M
3300027824\|Ga0209040_10122615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1439	Open in IMG/M
3300027825\|Ga0209039_10085610	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300027825\|Ga0209039_10197120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	820	Open in IMG/M
3300027854\|Ga0209517_10644023	Not Available	554	Open in IMG/M
3300027898\|Ga0209067_10179863	Not Available	1131	Open in IMG/M
3300027908\|Ga0209006_11408337	Not Available	533	Open in IMG/M
3300027911\|Ga0209698_10091463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2560	Open in IMG/M
3300027915\|Ga0209069_10911720	Not Available	533	Open in IMG/M
3300028789\|Ga0302232_10417691	Not Available	659	Open in IMG/M
3300029882\|Ga0311368_10089734	Not Available	2654	Open in IMG/M
3300030494\|Ga0310037_10007935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	5177	Open in IMG/M
3300030740\|Ga0265460_12102305	Not Available	591	Open in IMG/M
3300030878\|Ga0265770_1090933	Not Available	609	Open in IMG/M
3300030888\|Ga0265769_106583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	734	Open in IMG/M
3300031708\|Ga0310686_104272575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1784	Open in IMG/M
3300032160\|Ga0311301_10137212	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4502	Open in IMG/M
3300032160\|Ga0311301_10229934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3104	Open in IMG/M
3300032160\|Ga0311301_10563938	All Organisms → cellular organisms → Bacteria	1658	Open in IMG/M
3300032160\|Ga0311301_10738502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1371	Open in IMG/M
3300032160\|Ga0311301_11577672	Not Available	801	Open in IMG/M
3300032160\|Ga0311301_12309832	Not Available	611	Open in IMG/M
3300032898\|Ga0335072_11289710	Not Available	641	Open in IMG/M
3300033134\|Ga0335073_10000188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	75676	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.85%
Aquatic	Environmental → Aquatic	48.15%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.07%
Freshwater	Environmental → Aquatic → Freshwater	37.96%
Sediment	Environmental → Aquatic → Sediment	10.19%
Peat	Environmental → Terrestrial → Peat	2.78%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	37.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.26%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.19%
Loam	Environmental → Terrestrial → Soil → Loam	3.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.78%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	30.56%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.19%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.19%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	24.07%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	15.74%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	11.11%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	10.19%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	8.33%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.48%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.85%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.93%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.93%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003352	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300022521	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030878	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030888	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26341J46601_100296873	3300003219	Bog Forest Soil	MFGNIRQFSPFDGILIDDRNERPLTVALATIIMVWSFAFAVTFVSGDTGGNSESWLSGAAAVTSSTG
JGI26341J46601_100301123	3300003219	Bog Forest Soil	MFKTVKQSSPFDGILIDDRNERPLTVALATIVMVWSFAFALTFASGHAGGNSASWLSGPAAVVSSTAK*
JGI26345J50200_10199283	3300003352	Bog Forest Soil	QSSPFDGVLIDDRNERPLTIAFATIVVVWSIVFALTFASGHARAPSMNWAGGTAALTSSTVK*
JGI26340J50214_101141491	3300003368	Bog Forest Soil	MFGNIRQFSPFDGILIDDRNERPLTVALATIIMVWSFAFAVTFVSGDTGGNSESWLSGAAAVTSSTGK*
Ga0062385_108718522	3300004080	Bog Forest Soil	LYVMNRRPEHGLGGSSGDAVMFKTVKQSSPFDGILIDDRNERPLTVALATIVMVWSFAFALTFASGHAGGNSASWLSGPAAVVSSTAK*
Ga0062387_1008912041	3300004091	Bog Forest Soil	MFSNLRQSSPFDGILIDDRNERPLTVALATILVVWSLAFALTFASGHTANSGSWLGGAAAVTSSTGK*
Ga0062388_1011920142	3300004635	Bog Forest Soil	SSPFDGILIDDRNERPLTVALATIVMVWSFAFALTFASGHAGGNSASWLSGPAAVVSSTAK*
Ga0070764_105729282	3300005712	Soil	MFGNVRQSSPFDGVLIDDRNERPLTIAFATIVVVWSIVFALTFASGHAPAPSMNFAGGAAALMSSTVK*
Ga0075029_1000229943	3300006052	Watersheds	MFSNLSQSSPFDGILIDDRNERPLRVALATILVVWSLAFALTFASGHTGANTVSWLSGAAAVTSSTSK*
Ga0075029_1002528152	3300006052	Watersheds	SSSFDGIVIDDRNERPLTIALATIVMVWLFAFALTFASGHAGPNAASWLGGAAAVTSSTAN*
Ga0075029_1002780152	3300006052	Watersheds	MFNIRQSSSFDGIVIDDRNERPLTIALATIVMVWSFAFALTFASGHARAPSVSWLGAAAAVMSSTVK*
Ga0075017_1001547712	3300006059	Watersheds	MFSNLSQSSPFDGILIDDRNERPLKVALATILVVWSLAFALTFASGHTGANTVSWLSGAAAVTSSTSK*
Ga0075017_1006866631	3300006059	Watersheds	MFNIRQSSSFDGIVIDDRNERPLTIALATIVVVWSFAFALTFASGHARAPSVSWLGAAAAVMSSTVK*
Ga0075017_1010521941	3300006059	Watersheds	MFNTVRQSSSFDGIVIDDRNERPLTIALATIVMVWLFAFALTFASGHAGPNGASWLGGAAAVTSSTTN*
Ga0075017_1016103311	3300006059	Watersheds	MFSNLRQSSPFDGILIDDRNERPLTVALATILVVWSLAFAFTFASGHTANSGSWLSGAAAVTSSTGK*
Ga0075014_1001537673	3300006174	Watersheds	MFSNLRQSSPFDGILIDDRNERPLTVALATILVVWSLAFALTFTSGHTGANSVSWLGAPAAVASSTGK*
Ga0116214_13246441	3300009520	Peatlands Soil	MMFVNVRQSSAFDGILIDDRNERPLTVALATIIIVWSFAFALTFASGHTGAKSASWLCAPAAVTSSTGK*
Ga0116214_13770142	3300009520	Peatlands Soil	MFNTVRHSSSFDGIVIDDRNERPLSIALETIIMVWAFAFALTFASGHTGANSASWLSGAAAVT
Ga0116222_15261712	3300009521	Peatlands Soil	MYDNVRQSSPFDGILIDDRNERPLTVALATIIIVWSFAFALTFASGHTGAKSASWLCAPAAVTSSTGK*
Ga0116218_11188952	3300009522	Peatlands Soil	MNRRPEHGLGGSSGDAAMFKTVKQSSPFDGILIDDRNERPLTVALATIVMVWSFAFALTFASGHAGGNSASWLSGPAAVVSSTAK*
Ga0116221_12538691	3300009523	Peatlands Soil	MGRHTERDEAVRAETSAMYDNVSQSSPFDGILIDDRNERPLTVALATIIIVWSFAFALTFASGHTGAKSASWLCAPAAVTSSTGK*
Ga0116225_15317102	3300009524	Peatlands Soil	VRQSSPFDGILIDDRNERPLTIALATIVMVWSFAFALTLASGHTGANSASWLGAPAAVTSSACK*
Ga0116135_10546182	3300009665	Peatland	MFGNVRQSSPFDGVLIDDRNERPLTIAFATIVVVWSIVFALTFASGHARAPSMNWAGGAAALMSSTVK*
Ga0116224_104852031	3300009683	Peatlands Soil	MFSNLRQSSPFDGILIDDRNERPLTVALATIVMVWSFAFALTFASGHAGGNSASWLSGPAAVVSSTAK*
Ga0116216_106716051	3300009698	Peatlands Soil	MFNTVRHSSSFDGIVIDDRNERPLSIALATIIMVWAFAFALTFASGHTGANSASWLSGAAAVTSSTGK*
Ga0116219_104046811	3300009824	Peatlands Soil	MFRNLRQSSPFDGILIDDRNERPLAVALATILVVWSLAFALTFASGHTGANSASWLGAPAAVTSSTGK*
Ga0116219_106321472	3300009824	Peatlands Soil	MMFVNVRQSSAFDGILIDDRNERPLTIALTTIVMVWSFAFALTLASGYAGANSASWLGAPAAVTSSAGK*
Ga0074046_101203091	3300010339	Bog Forest Soil	MNRRPEHGLGGSSGDAVMFKTVKQSSPFDGILIDDRNERPLTVALATIVMVWSFAFALTFASGHAGGNSASWLSGPAAVVSSTAK*
Ga0074046_101742992	3300010339	Bog Forest Soil	MFAKHANSFDGVLIDDRNERPLTIALATIVMVWSMAFALTFASGHLSARSAVSFDSAAAVTSSTAK*
Ga0074046_105594051	3300010339	Bog Forest Soil	MRRFKRGCGDVRGNIRQSSPFDGILIDDRNERPLTVALATIIMVWSFAFAVTFVSGDTGGNSESWLSGAAAVTSSTGK*
Ga0074046_107302951	3300010339	Bog Forest Soil	MFAKHANSFDGVLIDDRNERPLTIALATIVMVWSMAFALTFASGHLSARSALSFDSAAAVTSWTAK*
Ga0074046_107609901	3300010339	Bog Forest Soil	MFNTVRHSSSFDGIVIDDRNERPLTIALATIIMVWAFAFALTFASGHTGANSASWLSGAAAVTSSTGK*
Ga0074045_104837331	3300010341	Bog Forest Soil	MFGNVRQSSPFDGIMIDDRNERPLTVALATIIVVWSLAFALTFASGHTGANSASWLSGAAAVTLSGK*
Ga0074044_100963433	3300010343	Bog Forest Soil	MNRRPEHGLGGSSGDAVMFKTVKQSSPFDGILIDDHNERPLTVALATIVMVWSFAFALTFASGHAGGNSASWLSGPAAVVSSTAK*
Ga0074044_103129811	3300010343	Bog Forest Soil	MFGNVRQSSPFDGVLIDDRNERPLTIAFATIVVVWSIVFALTFASGHARALSMNWAGGTAALTSSTVK*
Ga0074044_105300802	3300010343	Bog Forest Soil	MYGNVKPAKPIDEALIDDRNERPLTIALAAIVAVWSIVFALTFASGHAGPHSAFSAGGAAAVMSSMDK*
Ga0136449_1004119731	3300010379	Peatlands Soil	MMFDNVRQSSSFDGILIDDRNERPLTVALVTIIMVWSIAFALTFASGHTGANSAAWLGAPAAVTSSAGK*
Ga0136449_1008163431	3300010379	Peatlands Soil	MFGNVRQSSPFDGIMIDDRNELPLTVALATIIVVWSLAFALTFASGHTGANSASWLSGAAAVTLSGK*
Ga0136449_1009741752	3300010379	Peatlands Soil	MFGKVRQSSPFDGILIDERNERPLTVALATIIMVWSFAFALTFASGHTGANSASWLGAPAPVTSSTGK*
Ga0136449_1017858942	3300010379	Peatlands Soil	MFGNVRQSSPFDGILIDDRNERPLAVALATIVMVWSFAFALTLASGHTSANSASWPGAPAAVMTP*
Ga0136449_1019466841	3300010379	Peatlands Soil	MMFVNVRQSSAFDGILIDDRNERPLTIALTTIVMVWSFAFALTLASGYAGANSASWLGAPAAVTSSTGK*
Ga0136449_1028065591	3300010379	Peatlands Soil	MMFGNVRQSSPFDGILIDDRNERPLTIALATIVMVWSFAFALTLASGHTGANSASWLGAPAAVTSSTGK
Ga0136449_1030202861	3300010379	Peatlands Soil	RHPQRDEGSSGDAVMFSNLSQSSPFDGILIDDRNERPLKVALATILVVWSLAFALTFASGQTGANTVSWLSGAAAVTSSTSK*
Ga0181532_105349661	3300014164	Bog	MFRNLRQSSPFDGILIDDRNERPLTVALATIIIVWSFAFALTFASGHTGAKSASWLGAPAAVTSSTGK*
Ga0181534_105074931	3300014168	Bog	MFGNVRQSSPFDGVLIDERNERPLTIAFATIVVVWSIVFALTFASGHARAPSMNFAGGAAALMSSTVK*
Ga0181537_103063123	3300014201	Bog	MFGNVRQSSPFDGVLIDDRNERPLTIAFATIVVVWSIVFALTFASGHAPAPSMNFAGGAAALMSSTVQ*
Ga0182018_107676482	3300014489	Palsa	MFNVRQSSSFDGIVIDDRNERPLTIALATIVMVWSFAFALTFASGHARAPSTSWLGAAAAVMSSTSK*
Ga0181525_107515271	3300014654	Bog	APILKVDEPAQTRSGGSSGDGFMFGNVRQSSPFDGVLIDERNERPLTIAFATIVVVWSIVFALTFASGHARAPSMNWAGGAAALMSSTVQ*
Ga0187802_102359742	3300017822	Freshwater Sediment	MYGNVKPAKPIDEALIDDRNERPLTIALAAIVAVWSIVFALTFASGHAGPHSAFSAGGVAAVMSSMDK
Ga0187808_103392952	3300017942	Freshwater Sediment	MYGNVKHAKPIDEALIDDRNERPLTIALAAIVAVWSIVFALTFASGHAGPHSAFSAGGAAAVMSSMDK
Ga0187819_106669471	3300017943	Freshwater Sediment	MFKTVKQSSPFDGILIDDRNERPLTVALATIIMVWSFAFALTFASSHAGANTASWLGGPAAVMPSTVK
Ga0187819_107474341	3300017943	Freshwater Sediment	MFGNVRQSSPFDGILIDERNERPLTVALATIIMVWSFAFALTFASGHTGANLASWLSGAAAVTSSDK
Ga0187879_100159824	3300017946	Peatland	MFGNVRQSSPFDGVLIDDRNERPLTIAFATIVVVWSIVFALTFASGHARAPSMNWAGGAAALMSSTVK
Ga0187879_106996382	3300017946	Peatland	MFGNVRQSSPFDGILIDDRNERPLTIALATIVVVWSIAFALTFASGHTGANSASWLSAPAAVTSSTGK
Ga0187879_108153331	3300017946	Peatland	MFNTVRQSSSFDGIVIDDRNERPLTIALATIVMVWLFAFALTFASGHAGPNGASWLGGAAAVTSSDK
Ga0187817_103487831	3300017955	Freshwater Sediment	MRWGGSSEDEAMFGNVRQSSPFDGILIDDRNERPLTVALATIVMVWSFAFALTFASGHTGAKSASWLGAPAAVTSSTGK
Ga0187817_103984941	3300017955	Freshwater Sediment	MFNTVRHSSSFDGIVIDDRNERPLTIALATIIMVWAFAFALTFASGHTGANSASWLSGAAAVTSSTGK
Ga0187816_103090172	3300017995	Freshwater Sediment	MFGKVRQSSPFDGILIDERNERPLTVALATIIMVWSFAFALTFASGHIGANSASWLSGAAAVTSSTGK
Ga0187873_11480702	3300018013	Peatland	MFDNVRQPSPFDGILIDERNERPLTIAFATIVVVWSIVFALTFASGHARAPSMNWAGGTAALMSSTVK
Ga0187874_102259041	3300018019	Peatland	MFGNVRQSSPFDGVLIDDRNERPLTIAFATIVVVWSIVFALTFASGHARAPSMNWAGGTAALMSSTVK
Ga0187885_100448524	3300018025	Peatland	MFGNVRQSSPFDGVLIDDRNERPLTIAFATIVVVWSIVFALTFASGHARAPSLNWAGGTAALMSSTVK
Ga0187867_101171952	3300018033	Peatland	MFDNVRQPSPFDGILIDERNERPLTIAFATIVVVWSIVFALTFASGHARAPSLNWAGGTAALMSSTVK
Ga0187855_100308411	3300018038	Peatland	MFGNVRQSSPFDGILIDERNERPLTIAFATIVVVWSIVFALTFASGHARAPSMNWAGGTAALMSSTVK
Ga0187855_100640151	3300018038	Peatland	MFGNVRQSSPFDGVLIDDRNERPLTIAFATIIVVWSIVFALTFASSQAGAPSLHWAGGAASLISSTAR
Ga0187855_103789711	3300018038	Peatland	MFGNVRQSSPFDGILIDDRNERPLTIALATIVVVWSIAFALTFASGHTGANSASWLGAPATVTSSTGK
Ga0187862_101507213	3300018040	Peatland	MFGNVRQSSPFDGILIDERNERPLMIAFATIVVVWSIVFALTFASGHARAPSLNWAGGTAALMSSTVK
Ga0187887_105363261	3300018043	Peatland	MFGNVRQSSPFDGILIDERNERPLTIAFATIVVVWSIVFALTFASGHARAPSMNWAGGAAALMSSTVK
Ga0210397_103675002	3300021403	Soil	MFNVRQSSSFDGIVIDDRNERPLTIALATIVMVWSFAFALTFASGHARAPSASWLGAAAAVMSSTVK
Ga0210387_109807641	3300021405	Soil	RPFDGIVIDDRNERPLTIALATIVVVWSFAFALTFASGHARAPSTSWLGAAAAVMSSTVK
Ga0213878_100402462	3300021444	Bulk Soil	MFKTFRQSSPFDGIVIDDRNERPLTVALATIVMVWSFAFALTFASGEARAPAASWLGAAAAVMSVR
Ga0224541_10088152	3300022521	Soil	MFGNVRQSSPFDGVLIDDRNERPLTIAFATIIVVWSIVFALTFASGHARAPSMNWAGGTAALMSSTVK
Ga0242659_11391381	3300022522	Soil	MFNVRQSSSFDGIVIDDRNERPLTTALATIVVVWSFAFALTFASGHARAPSTSWLGAAAAVMSSTVK
Ga0242664_11083082	3300022527	Soil	MFNVRQSSSFDGIVIDDRNERPLTIALATIVVVWSFAFALTFASGHARAPSTSWLGAAAAVMSSTVK
Ga0242662_102058682	3300022533	Soil	MFGNLRQSSPFDGVLIDARNERPLTIALATIVAVWSIVFALTFASGQARLHSTNWQGDAAALISSTAR
Ga0242662_103409701	3300022533	Soil	MFNFRQSSSFDGIVIDDRNERPLTIALATIVMVWSFAFALTFASGHARAPSASWLGAAAAVMSSTVK
Ga0209115_10021425	3300027567	Forest Soil	MFGNVRQSSPFDGVLIDERNERPLTIAFATIVVVWSIVFALTFASGHARAPSMNWAGGTAALMSSSVK
Ga0208044_11166001	3300027625	Peatlands Soil	MYDNVRQSSPFDGILIDDRNERPLTVALATIIIVWSFAFALTFASGHTGAKSASWLCAPAAVTSSTGK
Ga0209530_10411882	3300027692	Forest Soil	MFGRQSSPFDGILIDDRNDRPLTVALATIVMVWLFAFALTLASGHIGVNSGSWLGAPAAVTSPTGK
Ga0209446_11320471	3300027698	Bog Forest Soil	SLYVMNRRPEHGLGGSSGDAVMFKTVKQSSPFDGILIDDRNERPLTVALATIVMVWSFAFALTFASGHAGGNSASWLSGPAAVVSSTAK
Ga0209447_101076022	3300027701	Bog Forest Soil	MFGNVRQSSPFDGVLIDDRNERPLTIAFATIVVVWSIVFALTFASGHARAPSMNWAGGTAASPVHRRRAGVTG
Ga0209038_101017471	3300027737	Bog Forest Soil	MFGNVRQSSPFDGVLIDDRNERPLTIAFATIVVVWSIVFALTFASGHARAPSMNWAGGTAALTSSTVK
Ga0209656_100510492	3300027812	Bog Forest Soil	MFSNLRQSSPFDGILIDDRNERPLTVALATILVVWSLAFALTFASGHAGAKSASWLSGAAAVTSSTGK
Ga0209656_100958332	3300027812	Bog Forest Soil	MFGNIRQFSPFDGILIDDRNERPLTVALATIIMVWSFAFAVTFVSGDTGGNSESWLSGAAAVTSSTGK
Ga0209656_103843181	3300027812	Bog Forest Soil	MFAKHANSFDGVLIDDRNERPLTIALATIVMVWSMAFALTFASGHLSARSALSFDSAAAVMSSTAK
Ga0209040_100944953	3300027824	Bog Forest Soil	MFKTVRQSSPFDGFVIDDRNERPLTVALATIVMVWSFAFALTFVSGHAGAPHASWLGGPAAVISSTAK
Ga0209040_101226151	3300027824	Bog Forest Soil	MFAKHANSFDGVLIDDRNERPLTIALATIVMVWSMAFALTFASGHLSARSALSFDSAAAITSSTAK
Ga0209039_100856101	3300027825	Bog Forest Soil	MRWGGSSEDEAMFGNVRQSSPFDGILIDDRNERPLTVALATIVMVWSFAFALTLASGYAGANSASWLGAPAAVTSSTGK
Ga0209039_101971201	3300027825	Bog Forest Soil	AAMFGNIRQFSPFDGILIDDRNERPLTVALATIIMVWSFAFAVTFVSGDTGGNSESWLSGAAAVTSSTGK
Ga0209517_106440231	3300027854	Peatlands Soil	MFGNVRQSSPFDGIMIDDRNERPLTVALATIIVVWSLAFALTFASGHTGENSASWLSGAAAVTLSGK
Ga0209067_101798632	3300027898	Watersheds	MFSNLSQSSPFDGILIDDRNERPLRVALATILVVWSLAFALTFASGHTGANTVSWLSGAAAVTSSTS
Ga0209006_114083371	3300027908	Forest Soil	MSGNVREYSPFGGVLIDDRNERPLMVGLTTIVMVWSFAFALTVASGHIGVNSASWLGAPAAVTSSTGK
Ga0209698_100914633	3300027911	Watersheds	MFSNLSQSSPFDGILIDDRNERPLRVALATILVVWSLAFALTFASGHTGANTVSWLSGAAAVTSSTSK
Ga0209069_109117201	3300027915	Watersheds	MFNTVRQSSSFDGIVIDDRNERPLTIALATIVMVWLFAFALTFASGHTGPNGASWLGGAAAVTSSTTN
Ga0302232_104176911	3300028789	Palsa	MFGNVRQSSPFDGVLIDDRNERPLTIAFATIIVVWSIVFALTFASGHARAPSMNWAGGTAALTSSTVK
Ga0311368_100897341	3300029882	Palsa	MFGNVRQSSPFDGVLIDDRNERPLTIAFATIIVVWSIVFALTFASGHARAPSMNWAGGTA
Ga0310037_100079353	3300030494	Peatlands Soil	MFKTVKQSSPFDGILIDDRNERPLTVALATIVMVWSFAFALTFASGHAGGNSASWLSGPAAVVSSTAK
Ga0265460_121023051	3300030740	Soil	GDAAMFNVRQSSSFDGIVIDDRNERPLTIALATIVVVWSFAFALTFASGHARAPSTSWLGAAAAVMSSTVK
Ga0265770_10909332	3300030878	Soil	MFGNVRQSSPFDGVLIDERNERPLTIAFATIVVVWSIVFALTFASGHASASSMNLAGGTAALTSSTGK
Ga0265769_1065831	3300030888	Soil	TRSGGSSGDGFMFGNVRQSSPFDGVLIDDRNERPLTIAFATIVVVWSIVFALTFASGHARAPSMNWAGGTAALMSSTVK
Ga0310686_1042725754	3300031708	Soil	FMFGNVRQSSPFDGVLIDDRNERPLTIAFATIVVVWSIVFALTFASGHARAPSMNWAGGTAALMSSTVK
Ga0311301_101372122	3300032160	Peatlands Soil	MFRNLRQSSPFDGILIDDRNERPLAVALATILVVWSLAFALTFASGHTGANSASWLGAPAAVTSSTGK
Ga0311301_102299343	3300032160	Peatlands Soil	MFNTVRHSSSFDGIVIDDRNERPLSIALATIIMVWAFAFALTFASGHTGANSASWLSGAAAVTSSTGK
Ga0311301_105639382	3300032160	Peatlands Soil	MFGNVRQSSPFDGIMIDDRNELPLTVALATIIVVWSLAFALTFASGHTGANSASWLSGAAAVTLSGK
Ga0311301_107385022	3300032160	Peatlands Soil	MFSNLRQSSPFDGILIDDRNERPLTVALATILVVWSLAFALTFASGHTGANSGSWLSGAAAVTSSTGK
Ga0311301_115776721	3300032160	Peatlands Soil	MFSNLSQSSPFDGILIDDRNERPLKVALATILVVWSLAFALTFASGQTGANTVSWLSGAAAVTSSTSK
Ga0311301_123098321	3300032160	Peatlands Soil	MMFVNVRQSSAFDGILIDDRNERPLTIALTTIVMVWSFAFALTLASGYAGANSASWLGAPAAVTSSTGK
Ga0335072_112897102	3300032898	Soil	MFSSLSQSSPFDGILIDGRNERPLKVPLATILVVWSLAFALTFASGHTGANTASWLSGAAAVTSSTSK
Ga0335073_1000018837	3300033134	Soil	VMFSSLSQSSPFDGILIDGRNERPLKVPLATILVVWSLAFALTFASGHTGANTASWLSGAAAVTSSTSK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090753

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences